Citrus Sinensis ID: 001045
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1176 | 2.2.26 [Sep-21-2011] | |||||||
| Q42572 | 790 | DNA ligase 1 OS=Arabidops | no | no | 0.396 | 0.589 | 0.384 | 1e-99 | |
| P37913 | 916 | DNA ligase 1 OS=Mus muscu | yes | no | 0.406 | 0.521 | 0.390 | 6e-98 | |
| P18858 | 919 | DNA ligase 1 OS=Homo sapi | yes | no | 0.403 | 0.515 | 0.387 | 2e-97 | |
| Q9JHY8 | 918 | DNA ligase 1 OS=Rattus no | yes | no | 0.417 | 0.534 | 0.376 | 1e-95 | |
| P51892 | 1070 | DNA ligase 1 OS=Xenopus l | N/A | no | 0.390 | 0.428 | 0.376 | 3e-94 | |
| Q869E1 | 1192 | DNA ligase 1 OS=Dictyoste | yes | no | 0.393 | 0.388 | 0.379 | 2e-92 | |
| Q9W1H4 | 747 | DNA ligase 1 OS=Drosophil | yes | no | 0.391 | 0.615 | 0.349 | 8e-86 | |
| P12000 | 768 | DNA ligase 1 OS=Schizosac | yes | no | 0.377 | 0.578 | 0.374 | 2e-80 | |
| Q27474 | 773 | DNA ligase 1 OS=Caenorhab | yes | no | 0.377 | 0.574 | 0.347 | 7e-77 | |
| Q9C1W9 | 774 | DNA ligase 3 OS=Schizosac | no | no | 0.378 | 0.574 | 0.342 | 1e-75 |
| >sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/486 (38%), Positives = 288/486 (59%), Gaps = 20/486 (4%)
Query: 691 LVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSP 750
L+ P +DP + +CW G+ P++ +A FDL+ E G+I +LCNM R+++A +P
Sbjct: 153 LLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTP 212
Query: 751 DDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQ 810
+D++ VYL N+IA HE +EL IG S + AI EA G ++ LGDLG VA+
Sbjct: 213 EDLVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAK 272
Query: 811 ECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVR 870
R TQ ++ P PL + V+ +I+ ++G S +KK+ + L+ + + E +L R
Sbjct: 273 GSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTR 332
Query: 871 TLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPS 930
L LR+G +T+L AL QA V N H N K L+ + + + +LP
Sbjct: 333 LLQAKLRLGFSGQTVLAALGQAAVYNE----EHSKPPPNTKSPLEEAAKIVKQVFTVLPV 388
Query: 931 LDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQ 990
D+++P+L++ G+ T + GVPI PMLAK T GV ++L FQ+ FTCEYKYDG+
Sbjct: 389 YDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGE 448
Query: 991 RAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCK 1050
RAQIH + DGT I+SRN + T ++PD+ ++ KP+ +FILD EVVA DR+ K
Sbjct: 449 RAQIHFMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKK-K 507
Query: 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110
I+ FQ LS+R R + + +KV +C+F FD+++ NG+QL+ L+ RR+ L + F
Sbjct: 508 ILPFQILSTRARKN----VNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESF- 562
Query: 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPS 1170
+E GYFQ+A +T ++D+ +I FL+ ++ CEG+I+K+LD DA Y P+
Sbjct: 563 EEDPGYFQFATAVT--------SNDI--DEIQKFLDASVDVGCEGLIIKTLDSDATYEPA 612
Query: 1171 KRSDSW 1176
KRS++W
Sbjct: 613 KRSNNW 618
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Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1 |
| >sp|P37913|DNLI1_MOUSE DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 291/502 (57%), Gaps = 24/502 (4%)
Query: 683 SKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF 742
+K +DP + Y PIE ACW GQ P++ +ARTF+ +E ++K + L N+
Sbjct: 255 TKGTLDPANYNPSKNNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 314
Query: 743 RSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRL 802
RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G IR
Sbjct: 315 RSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEK 374
Query: 803 GDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE 862
GD+G VA+ R TQ L+ PPPPL I V++ C I+ TGS S A+K +I L +CR
Sbjct: 375 GDVGLVAENSRSTQRLMLPPPPLTISGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRH 434
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMN-SSLEF------SHEGKM-ENLKEKL 914
E +++ R+L LR+G +++L ALAQAV + EF + +GK E K L
Sbjct: 435 SEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWL 494
Query: 915 QSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLK 974
+ + + +P LD +IP L+ G+ + PGVP+KPMLA T GV +VLK
Sbjct: 495 EEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLK 554
Query: 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTF 1034
F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +F
Sbjct: 555 RFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSF 614
Query: 1035 ILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLL 1094
ILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+
Sbjct: 615 ILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLV 669
Query: 1095 GYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCE 1154
L +RR+ L++ F E G F + + T D +I FLE+++ SCE
Sbjct: 670 RQPLSRRRQLLRENFV-ETEGEFVFTTSLD--------TKDT--EQIAEFLEQSVKDSCE 718
Query: 1155 GIIVKSLDVDAGYSPSKRSDSW 1176
G++VK+LDVDA Y +KRS +W
Sbjct: 719 GLMVKTLDVDATYEIAKRSHNW 740
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DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P18858|DNLI1_HUMAN DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/498 (38%), Positives = 291/498 (58%), Gaps = 24/498 (4%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ L+ PPPPL V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMN-SSLEF------SHEGK-MENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + +P LD +IP L+ G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F E G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFV-ETEGEFVFATSLD--------TKDI--EQIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
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DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 297/523 (56%), Gaps = 32/523 (6%)
Query: 666 IVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLV 725
+ +E Q +D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +
Sbjct: 240 VKTEVKQEESDTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKI 299
Query: 726 EAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIE 785
E ++K + L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+
Sbjct: 300 EEVSARLKMVETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVA 359
Query: 786 EACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGS 845
+A G IR GD+G VA+ R TQ L+ P PPL + V++ C I+ TGS S
Sbjct: 360 QATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPSPPLTVSGVFTKFCDIARLTGSAS 419
Query: 846 TARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA------------V 893
A+K +I L +CR E +F+ R+L LR+G +++L ALAQA V
Sbjct: 420 MAKKMDIIKGLFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAGSLTPPGQEFPTV 479
Query: 894 VMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMV 953
V+++ + E + L+E+ L E +P LD +IP L+ G+ +
Sbjct: 480 VVDAGKGKTAEARKMWLEEQGMILKQTFCE----VPDLDRIIPVLLEHGLESLPEHCKLS 535
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
PGVP+KPMLA T GV +VLK F+ FTCEYKY GQRAQIH L G V+IFSRN ++ +
Sbjct: 536 PGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQRAQIHVLEGGEVKIFSRNQEDNS 595
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
++PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R D+
Sbjct: 596 GKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SE 650
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
++V +C++ FD+++ NGE L L +RR+ L++ F E G F +A + T
Sbjct: 651 IQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFV-ETEGEFVFATSLD--------T 701
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D+ +I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 702 KDI--EQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 742
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DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 185/491 (37%), Positives = 283/491 (57%), Gaps = 32/491 (6%)
Query: 698 KYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAV 757
KY PI+ ACW +GQ PY+ +ARTF+ +E E ++K + L N RS++AL+P+D+LP +
Sbjct: 425 KYHPIDDACWCNGQKVPYLAVARTFERIEEESARLKNVETLSNFLRSVIALTPEDLLPCI 484
Query: 758 YLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA 817
YLC N++ +E +EL IG +++ A+ +A G KI+ GDLG VA+ R Q
Sbjct: 485 YLCLNRLGPAYEGLELGIGETILMKAVAQATGRQLEKIKAEAQEKGDLGLVAESSRSNQR 544
Query: 818 LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR 877
+ PP L+ V+ L I+ TG+ S +K +I L +CR E +++ R+L LR
Sbjct: 545 TMFTPPKLMASGVFGKLKDIARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLGGKLR 604
Query: 878 IGAMMRTILPALAQAV------------VMNSSLEFSHEGKMENLKEKLQSLSAAAVEAY 925
IG +++L ++AQAV VM++ S + + ++EK L E
Sbjct: 605 IGLAEQSVLSSIAQAVCLTPPGRDAPPTVMDAGKGMSADARKSWIEEKAMILKQTFCE-- 662
Query: 926 NILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEY 985
LP+ D +IP L+ GI + PG+P+KPMLA T G+ +VLK F AFTCEY
Sbjct: 663 --LPNYDAIIPILLEHGIDDLPKHCRLTPGIPLKPMLAHPTKGIGEVLKRFDEAAFTCEY 720
Query: 986 KYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDR 1045
KYDG+RAQIH L +G V ++SRN + T+++PD+IS I + K + + ILD E VA D
Sbjct: 721 KYDGERAQIHILENGEVHVYSRNQENNTTKYPDIISRIPKIKKESVKSCILDTEAVAGDA 780
Query: 1046 KNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYL 1105
+ +I FQ L++R+R D+ +KV +CV+ FD+++ NGE L+ +RR+ L
Sbjct: 781 EKK-QIQPFQVLTTRKRKDVDA----SEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLL 835
Query: 1106 KDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDA 1165
+D F E G F +A M D +I+ FL++++ SCEG++VK+L+ DA
Sbjct: 836 RDSFL-ETEGQFMFATYMDKSNTD----------EISEFLDQSIKDSCEGLMVKTLEQDA 884
Query: 1166 GYSPSKRSDSW 1176
Y +KRS +W
Sbjct: 885 TYEIAKRSHNW 895
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DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 185/488 (37%), Positives = 297/488 (60%), Gaps = 25/488 (5%)
Query: 698 KYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAV 757
KY PIE A W G+ PY+ LA+TF+++E+ ++ + L N+FRS++ LSP D++ +
Sbjct: 547 KYRPIEDAQWKKGEAVPYMVLAKTFEMMESTSSRLIIIEHLANLFRSIMLLSPKDLVMTI 606
Query: 758 YLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA 817
YL NKI ++++ EL IG ++ ++ E+ G + I+ +GDLG +AQ R TQ
Sbjct: 607 YLSINKIGPSYQSKELGIGEHVLIKSLAESTGRSVDVIKQELTEVGDLGIIAQNSRSTQT 666
Query: 818 LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR 877
L+ P PL I+ V+ +I+ +G+G +KK LI L+ SC++ E +++R+L LR
Sbjct: 667 LMGKPTPLTIQSVFKTFQQIADLSGTGGQQKKKDLIKKLLVSCKDCETLYIIRSLQGKLR 726
Query: 878 IGAMMRTILPALAQAVVMNSSLEFS--------HEGKMENLKEKLQSLSAAAVEAYNILP 929
IG R++L ALA++V++ ++ S + K E +E+ Q++ + AY+ LP
Sbjct: 727 IGLAERSVLMALAKSVLVTPPIDGSGQQIFDIRKQMKQEEFEERYQNVVSKVTRAYSQLP 786
Query: 930 SLDLLIPSLMN-KGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYD 988
+ DL +P L+ GI ST S+ G+P+KPMLA+ T G+ Q+L F + FTCE+KYD
Sbjct: 787 NYDLFVPHLIAVNGIDNILSTCSLKVGIPVKPMLAQPTTGISQMLDRFSDMEFTCEFKYD 846
Query: 989 GQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNG 1048
G+RAQIH+L DGT I++RN ++ T ++PD+++ + +F P +FILD E VA D
Sbjct: 847 GERAQIHRLPDGTTHIYTRNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATK 906
Query: 1049 CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
KI+SFQ LS+R R + + +KV +CVF FD+++ NG+ L+ L +RR++L +
Sbjct: 907 -KILSFQVLSTRARKS----VQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVEN 961
Query: 1109 FYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYS 1168
F G F +AK + SDV + I ++LEEA+ +CEG++VK+L + Y
Sbjct: 962 FIASD-GVFAFAKYSNI--------SDV--NDIQSYLEEAVEGNCEGLMVKTLKEKSIYE 1010
Query: 1169 PSKRSDSW 1176
PS+RS +W
Sbjct: 1011 PSRRSYNW 1018
|
DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 288/481 (59%), Gaps = 21/481 (4%)
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPA 756
+ Y P+++A W + PY+ LARTF ++E +G++K + L N F S++ +SP+D++P+
Sbjct: 109 DSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTLSNFFCSVMLVSPEDLVPS 168
Query: 757 VYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ 816
VYL N++A +E +EL + + + AI +A G N + I+ GDLG VA++ R +Q
Sbjct: 169 VYLSINQLAPAYEGLELGVAETTLMKAICKATGRNLAHIKSQTQLTGDLGIVAEQSRVSQ 228
Query: 817 ALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL 876
++ P PL ++DV+ L +I+ +G K L+ N+ +CR E +F +R+L+ L
Sbjct: 229 RMMFQPAPLNVRDVFRKLREIAKLSGQS----KMDLVYNMFVACRSSEARFFIRSLIGKL 284
Query: 877 RIGAMMRTILPALAQAVVMNSSLEFSHEGKMENL-KEKLQSLSAAAVEAYNILPSLDLLI 935
RIG +++L ALA +V + ++ K+ ++ K+++ + AY P+ D++I
Sbjct: 285 RIGIAEQSLLTALAIGLVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIII 344
Query: 936 PSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIH 995
P+++ I M PG+P++PMLA+ T GV +V + F TCE+KYDG+RAQIH
Sbjct: 345 PAILKYDIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIH 404
Query: 996 KLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQ 1055
+ G + IFSRN + T+++PDLI+ K ++I+D+E+VA D + +I+ FQ
Sbjct: 405 RNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIVAWDVERK-QILPFQ 463
Query: 1056 ELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115
LS+R+R D I+ +KV +CV++FD+++ NG L+ L +RRK L + F E G
Sbjct: 464 VLSTRKRKNVD----IEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHF-QEVEG 518
Query: 1116 YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDS 1175
+++A + T+D+ ++ FLEE++ +CEG++VK+LD +A Y +KRS +
Sbjct: 519 EWKFATALD--------TNDI--DEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRN 568
Query: 1176 W 1176
W
Sbjct: 569 W 569
|
DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 259/465 (55%), Gaps = 21/465 (4%)
Query: 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIE 772
A + + + F +E +++ + ++ F +L P D+L VYL NK+ ++ +E
Sbjct: 147 ATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYLSINKLGPDYSGLE 206
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYS 832
L IG S++ AI E+ G +I+ ++++GDLG VAQ RQ Q + P L I ++
Sbjct: 207 LGIGESIIMKAIGESTGQTLQQIKLSFHKVGDLGLVAQTSRQNQPTMFKPAALTIPFLFD 266
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L KI+ +G+ S RK +I L+ SC E K+L+R L LR+ +TIL ALA A
Sbjct: 267 SLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALANA 326
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+ + + ++ E Q L + Y LPS DL++P L+ G+G T +
Sbjct: 327 TAQYHADKNGEKLSQQDRIEGEQILR----DVYCQLPSYDLIVPHLIEHGLGTLRETCKL 382
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PG+P KPMLAK T + +VL F AFTCEYKYDG+RAQ+H DG +FSRN +
Sbjct: 383 TPGIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENM 442
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
+ R+PD+ ++++ KP A +FILD E V DR KI+ FQ+L++R+R KD + I
Sbjct: 443 SVRYPDISVSVSKWKKPDARSFILDCEAVGWDRDEN-KILPFQKLATRKR--KD--VKIG 497
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+KV C+F FDI++ NG+ LL L +RRK L +F G F +AK
Sbjct: 498 DIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMF-QPSTGDFTFAKH---------- 546
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
+ S+ I FLEE++ SCEG++VK L+ D+ Y PSKRS W
Sbjct: 547 SDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHW 591
|
DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q27474|DNLI1_CAEEL DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 263/475 (55%), Gaps = 31/475 (6%)
Query: 707 WSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIAS 766
W+ G PY A T + +E GK K + L F +L SPDD+ VY+ N++
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGK-KKVDELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 767 NHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLL 826
++E +EL + + + A+ +A G KI++ GDLG VAQ+ R Q +LA P L
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+ V++ L +I+ +G+ + +K I L+ +C+ E +FLVR L +RIG +++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 887 PALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE----AYNILPSLDLLIPSLMNKG 942
AL A ++ + G +KL SL A V+ AY P+ + LI + +G
Sbjct: 192 SALGHAFTLSKITDQKVRG------DKLDSLKDANVKRVKTAYCECPNYNRLIEVALTEG 245
Query: 943 IGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTV 1002
+ + PG+P+KPMLA T G+ ++++ F+N+ TCE+KYDG+R QIHK DG +
Sbjct: 246 VEALVEKCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQI 305
Query: 1003 RIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRER 1062
I+SRN + T+++PD+I I+ +FI+DAEVVAID I+ FQ LS+R+R
Sbjct: 306 FIYSRNQENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAID--EAGLILPFQVLSTRKR 363
Query: 1063 GGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM-GYFQYAK 1121
+K + VF+FD+++ NGE L+ LR+RR+ L+ F +K+ G F +A
Sbjct: 364 KNATDDNGVK-----VVVFLFDLLYFNGEPLVRKPLRKRRELLRTNF--KKIDGSFYFAT 416
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ D +IN+F +EA+ + CEG+++K+LD +A Y S+RS SW
Sbjct: 417 SVDTNDTD----------EINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSW 461
|
DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9C1W9|DNLI3_SCHPO DNA ligase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=adl1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 270/467 (57%), Gaps = 22/467 (4%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
Y LA TF L+ + + +I+ +++L N +LL PD ++ V+LCTN IA N L
Sbjct: 162 YSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLIATVWLCTNSIAPNFYGKNLG 221
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSML 834
+G ++ + A++E CG S +++++N+ GD GDVA E + + L+ P PL IK VYS L
Sbjct: 222 VGPAMYSKALKEVCGITASALKNLWNKYGDPGDVAFEAKVSVRTLSRPEPLTIKKVYSTL 281
Query: 835 CKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVV 894
KI+ G+G+ RK L L+ S +E++++ R++++NLRIGA+ T+L +L++A
Sbjct: 282 LKIADSNGNGAQNRKLELTKFLLISSNAEEVRYIGRSIMQNLRIGAVQNTMLASLSKAFF 341
Query: 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVP 954
+ + ++L+++ + +++ +P ++L+ +L+ +GI +S+ P
Sbjct: 342 IFDNQNEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIENLKDNMSIRP 401
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G+P+KPML IT + +L+ + F+CE+KYDGQRAQIH G ++IFSR+ +E T
Sbjct: 402 GIPVKPMLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQIHCDRLGNIKIFSRHLEEITG 461
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
RFPD+I + K + FI++ E+VAID+ NG +I+ FQ+LS+RER +T+ +
Sbjct: 462 RFPDVIEVAQLALKHSCD-FIIEGELVAIDKSNG-QILDFQKLSTRERKK----VTVADI 515
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
+D+CVFVFDIMF +G+ L L +RR+ + F + FQ+ + + +
Sbjct: 516 TIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHF-NLIPNRFQFVSSLETNEEQS---- 570
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLD-----VDAGYSPSKRSDSW 1176
I F A+ + CEG++VK L+ + Y P KR + W
Sbjct: 571 ------IQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGW 611
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1176 | ||||||
| 359488141 | 1449 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.799 | 0.643 | 0.0 | |
| 296087222 | 1390 | unnamed protein product [Vitis vinifera] | 0.968 | 0.819 | 0.641 | 0.0 | |
| 356567248 | 1402 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.822 | 0.616 | 0.0 | |
| 255574286 | 1360 | DNA ligase I, putative [Ricinus communis | 0.922 | 0.797 | 0.617 | 0.0 | |
| 357508239 | 1498 | DNA ligase [Medicago truncatula] gi|3554 | 0.948 | 0.744 | 0.590 | 0.0 | |
| 297838379 | 1413 | ATP dependent DNA ligase family protein | 0.979 | 0.815 | 0.564 | 0.0 | |
| 334183682 | 1396 | DNA ligase 6 [Arabidopsis thaliana] gi|3 | 0.974 | 0.820 | 0.571 | 0.0 | |
| 12597768 | 1417 | DNA ligase I, putative [Arabidopsis thal | 0.974 | 0.808 | 0.569 | 0.0 | |
| 222619063 | 1455 | hypothetical protein OsJ_03041 [Oryza sa | 0.965 | 0.780 | 0.509 | 0.0 | |
| 357130735 | 1365 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.794 | 0.489 | 0.0 |
| >gi|359488141|ref|XP_002266168.2| PREDICTED: uncharacterized protein LOC100266816 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1598 bits (4139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 808/1255 (64%), Positives = 964/1255 (76%), Gaps = 96/1255 (7%)
Query: 6 SDKNLTLDSTHLFLSTQSS----------PPDSLIF-------PPIPRTFPPSKHVPNTR 48
S + +TLDS HLFL++ S PP SL F PPIP FP SK +P +R
Sbjct: 40 SSETMTLDSAHLFLNSHKSLSQHQSPQPPPPPSLSFLSNHSPLPPIPTNFPQSKLIPKSR 99
Query: 49 FLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIY 108
F++D FR + D+SV+YFLSHFHSDHY+GLSP WS GIIFCS T+RLL ++L ++ F+Y
Sbjct: 100 FVVDGFRCSGDYSVTYFLSHFHSDHYSGLSPKWSNGIIFCSNTTARLLVEVLGVSSLFVY 159
Query: 109 PLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPV 168
PL + PVLIDGCEV L+ ANHCPGAVQFLFKVPG +G FERYVHTGDFRFC++M L+P
Sbjct: 160 PLAVSQPVLIDGCEVALLDANHCPGAVQFLFKVPGVDGRFERYVHTGDFRFCESMKLEPC 219
Query: 169 MNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV 228
+ EF G +AVFLDTTYCNPKF+FP Q+ESV+Y+V + R+G E N+GL K VLFLVATYV
Sbjct: 220 LGEFVGSEAVFLDTTYCNPKFVFPSQDESVDYIVEAIERIGLE-NKGLMKSVLFLVATYV 278
Query: 229 IGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWN------ 282
IGKE+IL+EI ++ K+ VD RKM VLRVLGY D GVFTEDES++DVHVVGWN
Sbjct: 279 IGKERILLEISRRRNCKIHVDGRKMSVLRVLGYEDGGVFTEDESKSDVHVVGWNVLGETW 338
Query: 283 -----------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNY 331
EIM+ERGY KVVGFVPTGWTYEVKRNKFA+R+KD+FEIHLVPYSEHSNY
Sbjct: 339 PYFRPNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRNKFAMRTKDSFEIHLVPYSEHSNY 398
Query: 332 DELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTS 391
DELREYVKFL+PKRVIPTVG+DIEKLDSKHAN MRK+FAGLVDEMA K EFL GF RG
Sbjct: 399 DELREYVKFLRPKRVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFLKGFQRGCL 458
Query: 392 EIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDD 451
E DENVE + N+ L E V K K E + S L SSS ++E GS+D T L+D
Sbjct: 459 EADENVENNTRTVLNKELDAEKHVTFSKRKTKESTESGFLAVSSSSMQEPGSRDSTLLND 518
Query: 452 EETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQEYKLPTIKH 511
+ +E+++QE+R+CLP WVTQNQ+LDL+S S N+++AVSNFYE ET+ EQ I H
Sbjct: 519 KGSEEVIQELRDCLPIWVTQNQMLDLLSCSDGNVIEAVSNFYERETEFREQ-----VIGH 573
Query: 512 ----------SIKSTLSPSKRKKTVTNNPKK----------------------------- 532
S+K ++S SK +V ++P+K
Sbjct: 574 TNSVCTSQTSSLKDSVSLSKLG-SVGSSPQKMEDIHGSQSYSLLNIRSSMKSSSLSSGKR 632
Query: 533 ----------KGKVPSKMESSGAKQPTITSFFNKLLPNMSQ-GDVVESKSEECPKDENPL 581
KGKV SK ES G+KQ TIT FF+K+ N SQ GD + SE+ +EN
Sbjct: 633 KKNLDKKSIKKGKVGSKPESGGSKQSTITRFFSKIASNDSQSGDGI---SEQLSDNENSF 689
Query: 582 QSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVN 641
S AI +Y E+++QF+KI+N +ES + Y +++L+KTKG+++MALD+YY EG+ G+
Sbjct: 690 PSEAITSYEEQVEQFIKIVNVDESSRYYVSSILKKTKGDINMALDIYYSKPEGNLGENEE 749
Query: 642 RLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDP 701
RL S S+Q + C + CSS LEK VSE+ + + + S++ + TLVSLP EKY P
Sbjct: 750 RLVVSSKSIQPECCIQSCSSELEKKVSEK-ESGNIVEAKGLSRDTIAATLVSLPLEKYSP 808
Query: 702 IEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCT 761
IEHACW GQPAPY+HLARTFDLVE E+GKIKA SMLCNMFRSLLALSP+DV+PAVYLCT
Sbjct: 809 IEHACWKLGQPAPYLHLARTFDLVEGEKGKIKAASMLCNMFRSLLALSPEDVIPAVYLCT 868
Query: 762 NKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAP 821
NKIA++HEN+ELNIGGS+VTSA+EEACGT+RSKIR MYN LGDLGDVAQ CRQTQ+ LAP
Sbjct: 869 NKIAADHENMELNIGGSIVTSAMEEACGTSRSKIRAMYNSLGDLGDVAQVCRQTQSFLAP 928
Query: 822 PPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAM 881
P PLLIKDV+SML ISVQTGSGS RKKSLI+NLM SCREKE+KFLVRTLVRNLRIGAM
Sbjct: 929 PSPLLIKDVFSMLRNISVQTGSGSIVRKKSLILNLMRSCREKEIKFLVRTLVRNLRIGAM 988
Query: 882 MRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNK 941
MRT+LPALAQAVV++SS F H+G EN+KEKLQ LSAA VEAYNILP+LDLLIPSL++K
Sbjct: 989 MRTVLPALAQAVVLHSSPNFYHKGTTENIKEKLQCLSAAVVEAYNILPNLDLLIPSLLDK 1048
Query: 942 GIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT 1001
GIGFS+S+LSMVPG+PIKPMLAKITNGVPQ LKLFQNKAFTCEYKYDGQRAQIHKLVDG+
Sbjct: 1049 GIGFSSSSLSMVPGIPIKPMLAKITNGVPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGS 1108
Query: 1002 VRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRE 1061
VRIFSRNGDETTSRFPDL+S++ E CKP A TFILDAEVVAIDRKNG K+MSFQELSSRE
Sbjct: 1109 VRIFSRNGDETTSRFPDLVSVVRESCKPDALTFILDAEVVAIDRKNGSKLMSFQELSSRE 1168
Query: 1062 RGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAK 1121
RG KDS+IT+ S+KVDICVFVFDIMFANG+QLL LRQRRKYLKDLF ++K+GYF+YA+
Sbjct: 1169 RGSKDSLITLDSIKVDICVFVFDIMFANGKQLLDIPLRQRRKYLKDLFNNQKLGYFEYAE 1228
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
E TVE DD T++ +L+KIN FLEEA SSCEGI++KSLD+DAGYSPSKR+D+W
Sbjct: 1229 ETTVEADDAS-TNEATLTKINLFLEEAFRSSCEGIMIKSLDIDAGYSPSKRTDTW 1282
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087222|emb|CBI33596.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1582 bits (4095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 802/1251 (64%), Positives = 955/1251 (76%), Gaps = 112/1251 (8%)
Query: 10 LTLDSTHLFLSTQSS----------PPDSLIF-------PPIPRTFPPSKHVPNTRFLID 52
+TLDS HLFL++ S PP SL F PPIP FP SK +P +RF++D
Sbjct: 1 MTLDSAHLFLNSHKSLSQHQSPQPPPPPSLSFLSNHSPLPPIPTNFPQSKLIPKSRFVVD 60
Query: 53 AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPI 112
FR + D+SV+YFLSHFHSDHY+GLSP WS GIIFCS T+RLL ++L ++ F+YPL +
Sbjct: 61 GFRCSGDYSVTYFLSHFHSDHYSGLSPKWSNGIIFCSNTTARLLVEVLGVSSLFVYPLAV 120
Query: 113 KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEF 172
PVLIDGCEV L+ ANHCPGAVQFLFKVPG +G FERYVHTGDFRFC++M L+P + EF
Sbjct: 121 SQPVLIDGCEVALLDANHCPGAVQFLFKVPGVDGRFERYVHTGDFRFCESMKLEPCLGEF 180
Query: 173 AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232
G +AVFLDTTYCNPKF+FP Q+ESV+Y+V + R+G E N+GL K VLFLVATYVIGKE
Sbjct: 181 VGSEAVFLDTTYCNPKFVFPSQDESVDYIVEAIERIGLE-NKGLMKSVLFLVATYVIGKE 239
Query: 233 KILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWN---------- 282
+IL+EI ++ K+ VD RKM VLRVLGY D GVFTEDES++DVHVVGWN
Sbjct: 240 RILLEISRRRNCKIHVDGRKMSVLRVLGYEDGGVFTEDESKSDVHVVGWNVLGETWPYFR 299
Query: 283 -------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELR 335
EIM+ERGY KVVGFVPTGWTYEVKRNKFA+R+KD+FEIHLVPYSEHSNYDELR
Sbjct: 300 PNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRNKFAMRTKDSFEIHLVPYSEHSNYDELR 359
Query: 336 EYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDE 395
EYVKFL+PKRVIPTVG+DIEKLDSKHAN MRK+FAGLVDEMA K EFL GF RG E DE
Sbjct: 360 EYVKFLRPKRVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFLKGFQRGCLEADE 419
Query: 396 NVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETE 455
N V K K E + S L SSS ++E GS+D T L+D+ +E
Sbjct: 420 N----------------KHVTFSKRKTKESTESGFLAVSSSSMQEPGSRDSTLLNDKGSE 463
Query: 456 KMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQEYKLPTIKH---- 511
+++QE+R+CLP WVTQNQ+LDL+S S N+++AVSNFYE ET+ EQ I H
Sbjct: 464 EVIQELRDCLPIWVTQNQMLDLLSCSDGNVIEAVSNFYERETEFREQ-----VIGHTNSV 518
Query: 512 ------SIKSTLSPSKRKKTVTNNPKK--------------------------------- 532
S+K ++S SK +V ++P+K
Sbjct: 519 CTSQTSSLKDSVSLSKLG-SVGSSPQKMEDIHGSQSYSLLNIRSSMKSSSLSSGKRKKNL 577
Query: 533 ------KGKVPSKMESSGAKQPTITSFFNKLLPNMSQ-GDVVESKSEECPKDENPLQSNA 585
KGKV SK ES G+KQ TIT FF+K+ N SQ GD + SE+ +EN S A
Sbjct: 578 DKKSIKKGKVGSKPESGGSKQSTITRFFSKIASNDSQSGDGI---SEQLSDNENSFPSEA 634
Query: 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEF 645
I +Y E+++QF+KI+N +ES + Y +++L+KTKG+++MALD+YY EG+ G+ RL
Sbjct: 635 ITSYEEQVEQFIKIVNVDESSRYYVSSILKKTKGDINMALDIYYSKPEGNLGENEERLVV 694
Query: 646 SKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHA 705
S S+Q + C + CSS LEK VSE+ + + + S++ + TLVSLP EKY PIEHA
Sbjct: 695 SSKSIQPECCIQSCSSELEKKVSEK-ESGNIVEAKGLSRDTIAATLVSLPLEKYSPIEHA 753
Query: 706 CWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIA 765
CW GQPAPY+HLARTFDLVE E+GKIKA SMLCNMFRSLLALSP+DV+PAVYLCTNKIA
Sbjct: 754 CWKLGQPAPYLHLARTFDLVEGEKGKIKAASMLCNMFRSLLALSPEDVIPAVYLCTNKIA 813
Query: 766 SNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPL 825
++HEN+ELNIGGS+VTSA+EEACGT+RSKIR MYN LGDLGDVAQ CRQTQ+ LAPP PL
Sbjct: 814 ADHENMELNIGGSIVTSAMEEACGTSRSKIRAMYNSLGDLGDVAQVCRQTQSFLAPPSPL 873
Query: 826 LIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
LIKDV+SML ISVQTGSGS RKKSLI+NLM SCREKE+KFLVRTLVRNLRIGAMMRT+
Sbjct: 874 LIKDVFSMLRNISVQTGSGSIVRKKSLILNLMRSCREKEIKFLVRTLVRNLRIGAMMRTV 933
Query: 886 LPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGF 945
LPALAQAVV++SS F H+G EN+KEKLQ LSAA VEAYNILP+LDLLIPSL++KGIGF
Sbjct: 934 LPALAQAVVLHSSPNFYHKGTTENIKEKLQCLSAAVVEAYNILPNLDLLIPSLLDKGIGF 993
Query: 946 SASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIF 1005
S+S+LSMVPG+PIKPMLAKITNGVPQ LKLFQNKAFTCEYKYDGQRAQIHKLVDG+VRIF
Sbjct: 994 SSSSLSMVPGIPIKPMLAKITNGVPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVRIF 1053
Query: 1006 SRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGK 1065
SRNGDETTSRFPDL+S++ E CKP A TFILDAEVVAIDRKNG K+MSFQELSSRERG K
Sbjct: 1054 SRNGDETTSRFPDLVSVVRESCKPDALTFILDAEVVAIDRKNGSKLMSFQELSSRERGSK 1113
Query: 1066 DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTV 1125
DS+IT+ S+KVDICVFVFDIMFANG+QLL LRQRRKYLKDLF ++K+GYF+YA+E TV
Sbjct: 1114 DSLITLDSIKVDICVFVFDIMFANGKQLLDIPLRQRRKYLKDLFNNQKLGYFEYAEETTV 1173
Query: 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
E DD T++ +L+KIN FLEEA SSCEGI++KSLD+DAGYSPSKR+D+W
Sbjct: 1174 EADDAS-TNEATLTKINLFLEEAFRSSCEGIMIKSLDIDAGYSPSKRTDTW 1223
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567248|ref|XP_003551833.1| PREDICTED: uncharacterized protein LOC100807673 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1507 bits (3902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/1244 (61%), Positives = 932/1244 (74%), Gaps = 91/1244 (7%)
Query: 11 TLDSTHLFLST----QSSPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADFSVSYFL 66
TLDST L+L+ QS P + PP+P + P SK +P+TRFL+DAFR+A S SYFL
Sbjct: 5 TLDSTKLYLTALKTLQSEAPPTPSLPPLPSSIPHSKLIPHTRFLVDAFRHAGPHSHSYFL 64
Query: 67 SHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLV 126
SHFHSDHY+GLSPSWS+G+IFCS T+ LL +IL+I FI PLP++ P+ IDG V L+
Sbjct: 65 SHFHSDHYSGLSPSWSRGVIFCSHTTAALLRRILHIPAAFIVPLPLRQPLRIDGAHVTLL 124
Query: 127 GANHCPGAVQFLFKVP--GRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184
ANHCPGAVQFLF VP + RYVHTGDFRFC +M+ +P + F G DAVFLDTTY
Sbjct: 125 DANHCPGAVQFLFSVPRATADAAALRYVHTGDFRFCNSMVSEPALAPFVGADAVFLDTTY 184
Query: 185 CNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGR 244
CNPKF+FP QEES++YV +VV V E +VLFLVATYVIGKEKIL+E+ ++ R
Sbjct: 185 CNPKFVFPSQEESIDYVASVVESVERECEHNSSDKVLFLVATYVIGKEKILLELARRFKR 244
Query: 245 KVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWN-----------------EIMVE 287
K+ VD+RKMEVLRVLGYG++G FTED E+++HVVGWN E+M E
Sbjct: 245 KIHVDARKMEVLRVLGYGENGEFTEDGKESNIHVVGWNLLGETWPYFRPNFVRMKEVMAE 304
Query: 288 RG--YDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKR 345
RG Y KVVGFVPTGWTYEVKRN+FAV+SKD F+IHLVPYSEHSNYDELREYVKFLKPKR
Sbjct: 305 RGGSYSKVVGFVPTGWTYEVKRNRFAVKSKDLFKIHLVPYSEHSNYDELREYVKFLKPKR 364
Query: 346 VIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDEN-------VE 398
V+PTVG+D+EK DSKHA+KMRKYFA LVDE A+K++FL GF R E E V
Sbjct: 365 VVPTVGLDVEKSDSKHADKMRKYFARLVDETANKQDFLRGFLRDPGEKGEAGFKAEKVVS 424
Query: 399 EGAGSGSNEGLSKEGEVKS-KKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKM 457
+ G G + +E E+ + KKT+ + + SS +EE ++D T L+DEE EK+
Sbjct: 425 DALGPGQD---MEEEEINALKKTEGDMGIGPVVAVGLSSFMEETYAQDPTLLNDEEKEKI 481
Query: 458 VQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQ--------------- 502
+QE+ CLPTWVT+NQ+LDLIS SG N+++AVSNFYE ET+ +EQ
Sbjct: 482 IQELTFCLPTWVTRNQLLDLISISGSNVIEAVSNFYERETEFHEQVISCQTPVSTSKCCS 541
Query: 503 ---------------------------EYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGK 535
+ KL ++H++ S +SP+KRK++ + KK K
Sbjct: 542 LNGMDSLAKPCLNTNNTGKNIDIFPSQDSKLTNLRHTVPSPISPAKRKRSTDSKQNKKAK 601
Query: 536 VPSKMESSGAKQPTITSFFNKLLPNM---SQGDVVESKSEECPKDENPLQSNAIKTYGEE 592
V +K E SG+KQ TIT FF+K++P M +Q D E K ++ K E+ L ++ + Y +E
Sbjct: 602 VKAKSEPSGSKQATITRFFSKVIPEMPGGTQSDNSEPKLDQSSKVEDLLPTDDGQMYKDE 661
Query: 593 IDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQS 652
IDQF++IING ESLK YA T++EKTKG+++ ALD+YY N E K + SVQ
Sbjct: 662 IDQFMQIINGTESLKKYAITIIEKTKGDINKALDIYYGNSENLGEKQI--------SVQV 713
Query: 653 DSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQP 712
+S K ++K SEEL+ + D+ Q+ K+ +D T +SLPPEKY+P EHACW GQP
Sbjct: 714 ES--KIDRPVVKKHASEELRIVPDIFDQKVLKDNVDATHLSLPPEKYNPKEHACWKDGQP 771
Query: 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIE 772
APY+H+ARTF+L+E E+G+IKA S+LCNMFRSLLALSP DVLPAVYLCTNKIA++HEN E
Sbjct: 772 APYLHIARTFNLLEGEKGRIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKE 831
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYS 832
LNIGGSLVT+A+EEACGTNR KIR+M+N+ GDLGDVAQECRQTQ LLAPP PLLIKDV+S
Sbjct: 832 LNIGGSLVTAALEEACGTNRLKIREMFNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFS 891
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L KISVQTGS ST+RKK +IV+LM SCREKEMKFLVRTLVRNLRIGAM+RT+LPALA A
Sbjct: 892 ALQKISVQTGSRSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHA 951
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
V MNS EG EN+KEKLQ LS A VEAYNILP+LDL++PSLMNKGI FS S+LSM
Sbjct: 952 VAMNSCPTLHQEGTAENIKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSM 1011
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
VPG+PIKPMLAKITNG+PQ LKLF+NKAFTCEYKYDGQRAQIHKLVDG++R+FSRNGDE+
Sbjct: 1012 VPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDES 1071
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
TSRFPDLI II E KP A TFI+DAE+V IDRKNG +IMSFQELSSR RGGKD+++T +
Sbjct: 1072 TSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKDTLVTSE 1131
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
S+KVDIC+FVFDIMFANGEQLLG+ LR RRKYLKDLFYDEK GYF+YAKE TVE DD CL
Sbjct: 1132 SIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVEADDACL 1191
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
T + +L+KIN FLE+AL SSCEGI+VK+LDVDAGYSPSKRSD W
Sbjct: 1192 TCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKW 1235
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574286|ref|XP_002528057.1| DNA ligase I, putative [Ricinus communis] gi|223532518|gb|EEF34307.1| DNA ligase I, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1487 bits (3850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1195 (61%), Positives = 911/1195 (76%), Gaps = 110/1195 (9%)
Query: 42 KHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
KH+P TRFLIDAFR++ + +YFL+HFHSDHY+GLS +WS+G+IFCS+IT+ L+++ILN
Sbjct: 49 KHIPKTRFLIDAFRFSTA-AAAYFLTHFHSDHYSGLSSNWSQGMIFCSQITANLVTRILN 107
Query: 102 INPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161
+ +F+YPLP+ V+IDG E+ L+ ANHCPGAVQ LFKV +G FE YVHTGDFR+ +
Sbjct: 108 VPSQFVYPLPLNDTVIIDGSEITLIDANHCPGAVQLLFKVRS-SGTFEMYVHTGDFRYSR 166
Query: 162 TMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVL 221
M ++ +F GCDAVFLDTTYCNPKF+FP Q+ES++YVV+V+ R+GG+ + + KRVL
Sbjct: 167 EMKEVGILRDFVGCDAVFLDTTYCNPKFVFPKQQESIDYVVSVIERIGGDF-QAMSKRVL 225
Query: 222 FLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGW 281
FLVATYV+GKE+ILIEI K+C RKV VD RKMEVLRVLGYG+SGVFTEDE ++DVHVVGW
Sbjct: 226 FLVATYVVGKERILIEIAKRCRRKVHVDRRKMEVLRVLGYGESGVFTEDEGQSDVHVVGW 285
Query: 282 N-----------------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVP 324
N EIMVERGY ++VGFVPTGWTYEVK NKF+VRSKD+FEIHLVP
Sbjct: 286 NVLGETWPYFRPNFANMKEIMVERGYSRIVGFVPTGWTYEVKHNKFSVRSKDSFEIHLVP 345
Query: 325 YSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLM 384
YSEHSNYDELREYVKFL+PKRVIPTVG+DIE LDSKHA KM+K+FAGLVDEMA+KK+FLM
Sbjct: 346 YSEHSNYDELREYVKFLRPKRVIPTVGVDIENLDSKHAVKMQKHFAGLVDEMANKKQFLM 405
Query: 385 GFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSK 444
FHR +SE DE VE N+GL +E + S++L+SSS L+E GS+
Sbjct: 406 VFHRESSESDEKVEMDDVPDLNKGLVQEKK------------DPSVVLNSSSTLQEPGSQ 453
Query: 445 DVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQEY 504
++T ++DEETEKM+QE+ +CLP+WVT++Q+L LI SS ++VDAVSNF+EHET+ ++Q +
Sbjct: 454 NLTTINDEETEKMMQELSDCLPSWVTRDQMLHLIGSSRGSLVDAVSNFHEHETEFHQQVF 513
Query: 505 KLPT-------------------------------------------IKHSIKSTLSPSK 521
T +K SIKS +SP K
Sbjct: 514 ACGTAISSSQTGSIHESESHSKPILIKRSQESLSTPSSQNYKSSKSNVKPSIKSGMSPGK 573
Query: 522 RKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPL 581
+K+ P KK K SK+ES G KQPTITSFF+KL+P++SQG +V+ E+CP DENPL
Sbjct: 574 KKRIAEIMPSKKVKTKSKLESGGRKQPTITSFFSKLVPDVSQGSMVKLNPEKCPVDENPL 633
Query: 582 QSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVN 641
++ ++Y +EIDQF++II+GNE+ +GYAAT+LE+TKG+++ ALD++Y N EG+ G+ +
Sbjct: 634 PNDDTQSYTKEIDQFIRIIDGNEASRGYAATILERTKGDINKALDMHYGNPEGNSGEGIE 693
Query: 642 RLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDP 701
RL S V+ +CSS+ +K E +H+ D+S+QR + + V+LP E+Y+P
Sbjct: 694 RLVASGDLVEPQYHTNECSSSQDKTKLVEEEHMVDLSMQRSLTQNLALAHVALPTEEYNP 753
Query: 702 IEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCT 761
I+HACW G+PAPYIHLARTFDLVEAE+GKIKA S++CNMFR
Sbjct: 754 IQHACWRVGEPAPYIHLARTFDLVEAEKGKIKATSIMCNMFR------------------ 795
Query: 762 NKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAP 821
SLVTSAIEEACGTNRSKIRDMYN LGDLGDVAQ RQTQ LLAP
Sbjct: 796 ----------------SLVTSAIEEACGTNRSKIRDMYNSLGDLGDVAQVFRQTQTLLAP 839
Query: 822 PPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAM 881
PP LL+KDV+ +L KISVQTG+GST RKKSLIVNLM SCREKEMKF+VRTLVRNLRIGA+
Sbjct: 840 PPHLLVKDVFCVLRKISVQTGAGSTVRKKSLIVNLMRSCREKEMKFIVRTLVRNLRIGAV 899
Query: 882 MRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNK 941
M+T+LPALAQAV M+S ++ S E K E+LKEKLQ LSAA +EAYNILP+LDLLIPSL++K
Sbjct: 900 MKTVLPALAQAVAMHSLVK-SSEQKAESLKEKLQYLSAAVIEAYNILPNLDLLIPSLISK 958
Query: 942 GIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT 1001
GI FS+S+LSMVPGVPIKPMLAKITNGV QVLKLFQ+KAFTCEYKYDGQRAQIHKL +G+
Sbjct: 959 GIDFSSSSLSMVPGVPIKPMLAKITNGVSQVLKLFQDKAFTCEYKYDGQRAQIHKLPNGS 1018
Query: 1002 VRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRE 1061
+R+FSRNGDETTSRFPDLI+II E CKP A TFI+DAEVVA+DRKNG K+M+FQELSSRE
Sbjct: 1019 IRVFSRNGDETTSRFPDLINIIEESCKPTAVTFIVDAEVVAVDRKNGHKLMAFQELSSRE 1078
Query: 1062 RGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAK 1121
RG KDS IT+ +KV ICVFVFD+MFANGEQLL LRQRRKYLKDLF DE+ GYF+YAK
Sbjct: 1079 RGSKDSSITLNKIKVQICVFVFDVMFANGEQLLELPLRQRRKYLKDLFGDERKGYFEYAK 1138
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
E TVE D LT+D++ +KIN+FLE AL SSCEGI+VK+LD A YSPSKR+D+W
Sbjct: 1139 ETTVEACDASLTNDITETKINSFLENALRSSCEGIMVKTLDDHAEYSPSKRTDTW 1193
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508239|ref|XP_003624408.1| DNA ligase [Medicago truncatula] gi|355499423|gb|AES80626.1| DNA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/1255 (59%), Positives = 891/1255 (70%), Gaps = 140/1255 (11%)
Query: 38 FPPSKHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLS 97
P SK +PNTRFLID+FR+ S +YFLSHFHSDHY+ LS SWS GIIFCS ITS LL
Sbjct: 43 IPHSKLIPNTRFLIDSFRHTTPSSFTYFLSHFHSDHYSPLSSSWSHGIIFCSPITSHLLI 102
Query: 98 QILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDF 157
IL+I F++PL + V+IDG V L+ ANHCPGAVQFLFKV RYVHTGDF
Sbjct: 103 NILHIPSPFVHPLSLNQSVVIDGSVVTLIDANHCPGAVQFLFKVNETES--PRYVHTGDF 160
Query: 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQ 217
RF + MLL + EF G DAVFLDTTYC+PKF+FP Q ESV+Y+V+VV GE
Sbjct: 161 RFNREMLLDLNLGEFIGADAVFLDTTYCHPKFVFPTQNESVDYIVDVVKECDGE------ 214
Query: 218 KRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVH 277
VLFLVATYV+GKEKIL+EI ++CG+KVCVD +KMEVLR LGYG+SG FTED E++VH
Sbjct: 215 -NVLFLVATYVVGKEKILLEIARRCGKKVCVDGKKMEVLRALGYGESGEFTEDRLESNVH 273
Query: 278 VVGWN-----------------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEI 320
VVGWN EIMVERGY KVVGFVPTGWTYEVKR+KF VR KD+ +I
Sbjct: 274 VVGWNVLGETWPYFRPNFVRMKEIMVERGYSKVVGFVPTGWTYEVKRDKFKVREKDSCKI 333
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKK 380
HLVPYSEHSNY+ELREYV+FLKPK+V+PTVG+D+EK DSKH +KMRKYFAGLVDE A+K
Sbjct: 334 HLVPYSEHSNYEELREYVRFLKPKKVVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKH 393
Query: 381 EFLMGFHR---GTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSR 437
EFL GF + G S + V + G+ + G S E EVK + + + SS
Sbjct: 394 EFLKGFKQCDSGRSGFE--VGKDVGNDTEPGHSVEKEVKPSDVGGDKSIDQDVAMSLSSC 451
Query: 438 LEEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHET 497
+ E +D T L+DEE EK+VQE+ CLPTWVT++Q+LDLIS SG N+V+AVSNF+E ET
Sbjct: 452 MGETCIEDPTLLNDEEKEKVVQELSCCLPTWVTRSQMLDLISISGSNVVEAVSNFFERET 511
Query: 498 QLYEQ----EYKLPTIKHSIKSTLSP-----------------SKRKKTVTNNPKKKGKV 536
+ +EQ + +PT + + SP SK TN+ KK +
Sbjct: 512 EFHEQVNSSQTPVPTHRSCSSNDTSPLSKSNLKSFSSNDASPFSKSNLNNTNSTTKKLDL 571
Query: 537 --------------------PSK------------------MESSGAKQPTITSFFNKLL 558
PSK ESSG+KQ TIT FF K +
Sbjct: 572 FRSQESKLTNLRKALSNQISPSKRKKGSESKSNKKVKVKAKSESSGSKQATITKFFGKAM 631
Query: 559 PNM---SQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLE 615
P M +Q D SK E P+ E + ++A Y +EIDQF++IING+ESLK A T++E
Sbjct: 632 PVMPGDTQSDQFGSKPGESPEVEELVPTDAGNMYKQEIDQFMQIINGDESLKKQAITIIE 691
Query: 616 KTKGNVSMALDLYYDN--QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALE-KIVSEELQ 672
+ KG+++ ALD+YY N G+R + SVQ + C D LE K VS+EL
Sbjct: 692 EAKGDINKALDIYYSNSCNLGER----------EISVQGE-CKVD--RPLEKKYVSKELN 738
Query: 673 HITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKI 732
I D+S+ R ++ +D T VSLP +KY+P EHACW GQPAPY+HLARTF L+E E+GKI
Sbjct: 739 VIPDISMHRVLRDNVDATHVSLPSDKYNPKEHACWRDGQPAPYLHLARTFSLLEDEKGKI 798
Query: 733 KAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-----------------ELNI 775
KA S+LCNMFRSLL LSP+DVLPAVYLCTNKIA++HEN+ ELNI
Sbjct: 799 KATSILCNMFRSLLVLSPEDVLPAVYLCTNKIAADHENVVGLLCTNKDPCDMPLMQELNI 858
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLC 835
GGSLVT+A+EEACGTNR KI++MYN+LGDLGDVAQECRQTQ LLAPP PLLIKD+YS L
Sbjct: 859 GGSLVTTALEEACGTNRLKIKEMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALR 918
Query: 836 KISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM 895
KISVQTG+GST RKK +I++LM SCREKEMKFLVRTLVRNLRIGAM+RT+LPALA AVVM
Sbjct: 919 KISVQTGNGSTLRKKGIILHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVM 978
Query: 896 NSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPG 955
NS EG ENLK LQ LS A VEAYNILP+LD+++P+LMNKGI FS S+LSMVPG
Sbjct: 979 NSRPTVYEEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPTLMNKGIEFSVSSLSMVPG 1038
Query: 956 VPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR 1015
+PIKPMLAKITNG+PQ LKLFQNKAFTCEYKYDGQRAQIHKLVDG+V +FSRNGDE+TSR
Sbjct: 1039 IPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVLVFSRNGDESTSR 1098
Query: 1016 FPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVK 1075
FPDL+ +I E CKP A TFI+DAEVV IDRKNGC+IMSFQELSSR RGGKD+++T +S+K
Sbjct: 1099 FPDLVDMIKESCKPVASTFIIDAEVVGIDRKNGCRIMSFQELSSRGRGGKDTLVTKESIK 1158
Query: 1076 VDICVFVFDIMFANGEQL---LGYTLR--------QRRKY---LKDLFYDEKMGYFQYAK 1121
V IC+FVFDIMFANGE L L Y L+ + + Y LK LFYDE+ GYF+YAK
Sbjct: 1159 VGICIFVFDIMFANGEHLADPLKYCLQVTGFPSPPKTKVYASDLKALFYDERPGYFEYAK 1218
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
E ++E DD CLT + +L++IN FLE+ALHSSCEGI+VK+LD+DAGYSPSKRSD W
Sbjct: 1219 ETSIEADDACLTCEATLTRINAFLEDALHSSCEGIMVKTLDIDAGYSPSKRSDKW 1273
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838379|ref|XP_002887071.1| ATP dependent DNA ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297332912|gb|EFH63330.1| ATP dependent DNA ligase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1332 bits (3447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1243 (56%), Positives = 886/1243 (71%), Gaps = 91/1243 (7%)
Query: 8 KNLTLDSTHLF---LSTQSSPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYA--ADFSV 62
+ L LD+T L+ +S+ S+ P + P SK +P T F++D FR+ + SV
Sbjct: 21 ETLNLDTTELYSSAISSVSTQSPPPKPPFSSLSIPQSKRIPKTNFIVDLFRFPQHSSTSV 80
Query: 63 SYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCE 122
++FLSHFHSDHY+GLS +WSKGIIFCS T+RL+ +IL + +F++ LP+ V+IDG E
Sbjct: 81 AFFLSHFHSDHYSGLSSTWSKGIIFCSHKTARLVEEILQVPSQFVFALPMNQMVMIDGSE 140
Query: 123 VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182
VVL+ ANHCPGAVQFLFKV NGGFERYVHTGDFRFC M ++ F GCD VFLDT
Sbjct: 141 VVLIEANHCPGAVQFLFKVKLENGGFERYVHTGDFRFCDEMRFDSFLSGFIGCDGVFLDT 200
Query: 183 TYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKC 242
TYCNPKF+FP QEESV YVV+V++++ GE E +K+VLFLVATYVIGKEKIL+EI ++C
Sbjct: 201 TYCNPKFVFPTQEESVGYVVSVIDKIDGECVE-TKKKVLFLVATYVIGKEKILVEIARRC 259
Query: 243 GRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGW-----------------NEIM 285
RK+ VD RKM +L +LG G+SG+FTED +E+DVHVVGW NEIM
Sbjct: 260 KRKIVVDLRKMSILGILGCGESGMFTEDVNESDVHVVGWNVLGETWPYFRPNFVKMNEIM 319
Query: 286 VERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKR 345
VE+GYDKVVGFVPTGWTYEVKRNKFAVR KD+ EIHLVPYSEHSNYDELREY+KFLKPKR
Sbjct: 320 VEKGYDKVVGFVPTGWTYEVKRNKFAVRFKDSMEIHLVPYSEHSNYDELREYIKFLKPKR 379
Query: 346 VIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSGS 405
VIPTVG+DIEKLDSK NKM+K+F+GLVDEMA+KK+FL+GF+ + + +E + SG
Sbjct: 380 VIPTVGVDIEKLDSKEVNKMQKHFSGLVDEMANKKDFLLGFYCQSYQKNEKNDVDVVSGL 439
Query: 406 NEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKMVQEIRNCL 465
E + + + A ED ++ L + + D TE+++ E+R+ L
Sbjct: 440 AEVYAGDDK------NACEDGGDNVPSSRGPLLHD----TAPSSDSSVTERLLVELRDSL 489
Query: 466 PTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE---------------------- 503
P WVT+ Q+L+LI N V+ VSNFYE E +LY+Q
Sbjct: 490 PAWVTEEQMLNLIKKHAGNPVEIVSNFYECEAELYKQSSLPTLSLENQPVLFDDDVTDLQ 549
Query: 504 -----------------YKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAK 546
+ LP + K T+SP KR K+ + KK K K +
Sbjct: 550 PNPVKSTCPDVQAVQEGFDLPKKMNLTKGTISPGKRGKSSGSKSNKKAKKDPKSRPVSPR 609
Query: 547 QPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESL 606
QPTI FFNK+L + S V S++EEC D+ + ++A + Y E DQF+ I+NG+ESL
Sbjct: 610 QPTIFKFFNKVLDSGSNSVGVGSETEECNTDKKMVHNDATEAYKEVTDQFIDIVNGSESL 669
Query: 607 KGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKI 666
+ YAA+++++ KG+++ AL++YY N G S S+Q C + CSS K
Sbjct: 670 RDYAASIIDEAKGDINRALNIYYSNPIPGEGG------LSSKSIQFSHCPEACSSQEGKK 723
Query: 667 VSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVE 726
SE+ H ++ VQ ++E++D VSLPPE+Y P EHACW GQPAPYIHL RTF VE
Sbjct: 724 ASEKSGHAVNICVQSSAEEIVDKNYVSLPPEQYKPKEHACWRDGQPAPYIHLVRTFASVE 783
Query: 727 AERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEE 786
+E+GKIKAMSMLCNMFRSLLALSP+DVLPAVYLCTNKI+++HENI+LNIGGSL++SA+EE
Sbjct: 784 SEKGKIKAMSMLCNMFRSLLALSPEDVLPAVYLCTNKISADHENIDLNIGGSLISSALEE 843
Query: 787 ACGTNRSKIRDMYNRLGDL------------GDVAQECRQTQALLAPPPPLLIKDVYSML 834
ACG +R +RDMYN GDL GDVAQ CRQTQ LL PPPPLLI+DV+S L
Sbjct: 844 ACGISRPTVRDMYNSTGDLGKEKSIPSQLTYGDVAQLCRQTQKLLVPPPPLLIRDVFSTL 903
Query: 835 CKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVV 894
KISVQ+G+GST +KK+LIV LM SCREKE+KFLVRTLVRNLRIGAM+RT+LPAL +A+V
Sbjct: 904 RKISVQSGTGSTRQKKNLIVKLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALGRAIV 963
Query: 895 MNSSLEFSHEGKMEN-LKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMV 953
MNS ++ EN +EKL+ +SAA VEAYNILPSLD+++PSLM+K I FS STLSMV
Sbjct: 964 MNSFWSCHNKELSENCFREKLEGVSAAVVEAYNILPSLDVVVPSLMDKDIEFSTSTLSMV 1023
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
PG+PIKPMLAKI GV + +LFQ+KAFTCEYKYDGQRAQIHKL+DGTVRIFSRNGDETT
Sbjct: 1024 PGIPIKPMLAKIAKGVEEFFELFQDKAFTCEYKYDGQRAQIHKLLDGTVRIFSRNGDETT 1083
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
+RFPDL+ +I +F P A TF+LDAEVVAIDRKNG K MSFQELS+RERG KD+++T +S
Sbjct: 1084 ARFPDLVDVIKQFSCPVAETFMLDAEVVAIDRKNGSKFMSFQELSTRERGSKDALVTTES 1143
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
+KV++CVFVFDIMF NGEQLL LR+RR+ LK++F + + GY +YAKE+TVE ++ L
Sbjct: 1144 IKVEVCVFVFDIMFGNGEQLLALPLRERRRRLKEVFPEIRPGYLEYAKEITVEAEEASLN 1203
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ +LS+IN FL EA SSCEGI+VKSLD+DAGY P+KR DSW
Sbjct: 1204 NQDTLSRINAFLGEAFQSSCEGIMVKSLDIDAGYFPTKRYDSW 1246
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183682|ref|NP_176845.2| DNA ligase 6 [Arabidopsis thaliana] gi|332196428|gb|AEE34549.1| DNA ligase 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1232 (57%), Positives = 875/1232 (71%), Gaps = 86/1232 (6%)
Query: 8 KNLTLDSTHLFLSTQSSPPDSLIFP-PIPRT----FPPSKHVPNTRFLIDAFRYA-ADFS 61
+ L L++T L+ S SS S FP P P + P SK +PNT F++D FR S
Sbjct: 21 ETLNLNTTKLYSSAISSI--SPQFPSPKPTSSCPSIPNSKRIPNTNFIVDLFRLPHQSSS 78
Query: 62 VSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGC 121
V++FLSHFHSDHY+GLS SWSKGII+CS T+RL+++IL + +F++ LP+ V IDG
Sbjct: 79 VAFFLSHFHSDHYSGLSSSWSKGIIYCSHKTARLVAEILQVPSQFVFALPMNQMVKIDGS 138
Query: 122 EVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLD 181
EVVL+ ANHCPGAVQFLFKV + GFE+YVHTGDFRFC M P +N F GCD VFLD
Sbjct: 139 EVVLIEANHCPGAVQFLFKVKLESSGFEKYVHTGDFRFCDEMRFDPFLNGFVGCDGVFLD 198
Query: 182 TTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKK 241
TTYCNPKF+FP QEESV YVV+V++++ E +VLFLVATYV+GKEKIL+EI ++
Sbjct: 199 TTYCNPKFVFPSQEESVGYVVSVIDKISEE-------KVLFLVATYVVGKEKILVEIARR 251
Query: 242 CGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWN-----------------EI 284
C RK+ VD+RKM +L VLG G+ G+FTEDE+E+DVHVVGWN EI
Sbjct: 252 CKRKIVVDARKMSMLSVLGCGEEGMFTEDENESDVHVVGWNVLGETWPYFRPNFVKMNEI 311
Query: 285 MVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPK 344
MVE+GYDKVVGFVPTGWTYEVKRNKFAVR KD+ EIHLVPYSEHSNYDELRE++KFLKPK
Sbjct: 312 MVEKGYDKVVGFVPTGWTYEVKRNKFAVRFKDSMEIHLVPYSEHSNYDELREFIKFLKPK 371
Query: 345 RVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSG 404
RVIPTVG+DIEK D K NKM+K+F+GLVDEMA+KK+FL+GF+R + + +E + S
Sbjct: 372 RVIPTVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDFLLGFYRQSYQKNEKSDVDVVSH 431
Query: 405 SNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKMVQEIRNC 464
S E +E + A ED ++ L D T D +++ ++R+
Sbjct: 432 SAEVYEEE------EKNACEDGGENVPSSRGPILH-----DTTPSSDS---RLLIKLRDS 477
Query: 465 LPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE--------------------- 503
LP WVT+ Q+LDLI N VD VSNFYE+E +LY+Q
Sbjct: 478 LPAWVTEEQMLDLIKKHAGNPVDIVSNFYEYEAELYKQASLPTPSLNNQAVLFDDDVTDL 537
Query: 504 ------------------YKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGA 545
+ LP + K T+SP KR K+ + KK K K + G
Sbjct: 538 QPNPVKGICPDVQAIQKGFDLPRKMNLTKGTISPGKRGKSSGSKSNKKAKKDPKSKPVGP 597
Query: 546 KQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNES 605
QPT+ FFNK+L S V S++EEC D+ + +A + Y E DQF+ I+NG+ES
Sbjct: 598 GQPTLFKFFNKVLDGGSNSVSVGSETEECNTDKKMVHIDASEAYKEVTDQFIDIVNGSES 657
Query: 606 LKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEK 665
L+ YAA+++++ KG++S AL++YY G S ++Q C++ CSS +K
Sbjct: 658 LRDYAASIIDEAKGDISRALNIYYSKPREIPGDHAGERGLSSKTIQYPKCSEACSSQEDK 717
Query: 666 IVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLV 725
SE H ++ VQ ++E +D VSLPPEKY P EHACW GQPAPYIHL RTF V
Sbjct: 718 KASENSGHAVNICVQTSAEESVDKNYVSLPPEKYQPKEHACWREGQPAPYIHLVRTFASV 777
Query: 726 EAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIE 785
E+E+GKIKAMSMLCNMFRSL ALSP+DVLPAVYLCTNKIA++HENIELNIGGSL++SA+E
Sbjct: 778 ESEKGKIKAMSMLCNMFRSLFALSPEDVLPAVYLCTNKIAADHENIELNIGGSLISSALE 837
Query: 786 EACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGS 845
EACG +RS +RDMYN LGDLGDVAQ CRQTQ LL PPPPLL++DV+S L KISVQTG+GS
Sbjct: 838 EACGISRSTVRDMYNSLGDLGDVAQLCRQTQKLLVPPPPLLVRDVFSTLRKISVQTGTGS 897
Query: 846 TARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSL-EFSHE 904
T KK+LIV LM SCREKE+KFLVRTL RNLRIGAM+RT+LPAL +A+VMNS + + E
Sbjct: 898 TRLKKNLIVKLMRSCREKEIKFLVRTLARNLRIGAMLRTVLPALGRAIVMNSFWNDHNKE 957
Query: 905 GKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAK 964
+EKL+ +SAA VEAYNILPSLD+++PSLM+K I FS STLSMVPG+PIKPMLAK
Sbjct: 958 LSESCFREKLEGVSAAVVEAYNILPSLDVVVPSLMDKDIEFSTSTLSMVPGIPIKPMLAK 1017
Query: 965 ITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIIN 1024
I GV + L Q KAFTCEYKYDGQRAQIHKL+DGTV IFSRNGDETTSRFPDL+ +I
Sbjct: 1018 IAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLDGTVCIFSRNGDETTSRFPDLVDVIK 1077
Query: 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
+F PAA TF+LDAEVVA DR NG K+MSFQELS+RERG KD++IT +S+KV++CVFVFD
Sbjct: 1078 QFSCPAAETFMLDAEVVATDRINGNKLMSFQELSTRERGSKDALITTESIKVEVCVFVFD 1137
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNF 1144
IMF NGEQLL LR+RR+ LK++F + + GY +YAKE+TV ++ L + +LS+IN F
Sbjct: 1138 IMFVNGEQLLALPLRERRRRLKEVFPETRPGYLEYAKEITVGAEEASLNNHDTLSRINAF 1197
Query: 1145 LEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
LEEA SSCEGI+VKSLDV+AGY P+KRSDSW
Sbjct: 1198 LEEAFQSSCEGIMVKSLDVNAGYCPTKRSDSW 1229
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12597768|gb|AAG60081.1|AC013288_15 DNA ligase I, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1320 bits (3416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1236 (56%), Positives = 875/1236 (70%), Gaps = 90/1236 (7%)
Query: 8 KNLTLDSTHLFLSTQSSPPDSLIFP-PIPRT----FPPSKHVPNTRFLIDAFRYA-ADFS 61
+ L L++T L+ S SS S FP P P + P SK +PNT F++D FR S
Sbjct: 21 ETLNLNTTKLYSSAISSI--SPQFPSPKPTSSCPSIPNSKRIPNTNFIVDLFRLPHQSSS 78
Query: 62 VSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGC 121
V++FLSHFHSDHY+GLS SWSKGII+CS T+RL+++IL + +F++ LP+ V IDG
Sbjct: 79 VAFFLSHFHSDHYSGLSSSWSKGIIYCSHKTARLVAEILQVPSQFVFALPMNQMVKIDGS 138
Query: 122 EVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLD 181
EVVL+ ANHCPGAVQFLFKV + GFE+YVHTGDFRFC M P +N F GCD VFLD
Sbjct: 139 EVVLIEANHCPGAVQFLFKVKLESSGFEKYVHTGDFRFCDEMRFDPFLNGFVGCDGVFLD 198
Query: 182 TTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKK 241
TTYCNPKF+FP QEESV YVV+V++++ E +VLFLVATYV+GKEKIL+EI ++
Sbjct: 199 TTYCNPKFVFPSQEESVGYVVSVIDKISEE-------KVLFLVATYVVGKEKILVEIARR 251
Query: 242 CGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWN-----------------EI 284
C RK+ VD+RKM +L VLG G+ G+FTEDE+E+DVHVVGWN EI
Sbjct: 252 CKRKIVVDARKMSMLSVLGCGEEGMFTEDENESDVHVVGWNVLGETWPYFRPNFVKMNEI 311
Query: 285 MVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPK 344
MVE+GYDKVVGFVPTGWTYEVKRNKFAVR KD+ EIHLVPYSEHSNYDELRE++KFLKPK
Sbjct: 312 MVEKGYDKVVGFVPTGWTYEVKRNKFAVRFKDSMEIHLVPYSEHSNYDELREFIKFLKPK 371
Query: 345 RVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSG 404
RVIPTVG+DIEK D K NKM+K+F+GLVDEMA+KK+FL+GF+R + + +E + S
Sbjct: 372 RVIPTVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDFLLGFYRQSYQKNEKSDVDVVSH 431
Query: 405 SNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKMVQEIRNC 464
S E +E + A ED ++ L D T D +++ ++R+
Sbjct: 432 SAEVYEEE------EKNACEDGGENVPSSRGPILH-----DTTPSSDS---RLLIKLRDS 477
Query: 465 LPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE--------------------- 503
LP WVT+ Q+LDLI N VD VSNFYE+E +LY+Q
Sbjct: 478 LPAWVTEEQMLDLIKKHAGNPVDIVSNFYEYEAELYKQASLPTPSLNNQAVLFDDDVTDL 537
Query: 504 ------------------YKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGA 545
+ LP + K T+SP KR K+ + KK K K + G
Sbjct: 538 QPNPVKGICPDVQAIQKGFDLPRKMNLTKGTISPGKRGKSSGSKSNKKAKKDPKSKPVGP 597
Query: 546 KQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNES 605
QPT+ FFNK+L S V S++EEC D+ + +A + Y E DQF+ I+NG+ES
Sbjct: 598 GQPTLFKFFNKVLDGGSNSVSVGSETEECNTDKKMVHIDASEAYKEVTDQFIDIVNGSES 657
Query: 606 LKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEK 665
L+ YAA+++++ KG++S AL++YY G S ++Q C++ CSS +K
Sbjct: 658 LRDYAASIIDEAKGDISRALNIYYSKPREIPGDHAGERGLSSKTIQYPKCSEACSSQEDK 717
Query: 666 IVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLV 725
SE H ++ VQ ++E +D VSLPPEKY P EHACW GQPAPYIHL RTF V
Sbjct: 718 KASENSGHAVNICVQTSAEESVDKNYVSLPPEKYQPKEHACWREGQPAPYIHLVRTFASV 777
Query: 726 EAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIE 785
E+E+GKIKAMSMLCNMFRSL ALSP+DVLPAVYLCTNKIA++HENIELNIGGSL++SA+E
Sbjct: 778 ESEKGKIKAMSMLCNMFRSLFALSPEDVLPAVYLCTNKIAADHENIELNIGGSLISSALE 837
Query: 786 EACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGS 845
EACG +RS +RDMYN LGDLGDVAQ CRQTQ LL PPPPLL++DV+S L KISVQTG+GS
Sbjct: 838 EACGISRSTVRDMYNSLGDLGDVAQLCRQTQKLLVPPPPLLVRDVFSTLRKISVQTGTGS 897
Query: 846 TARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSL-EFSHE 904
T KK+LIV LM SCREKE+KFLVRTL RNLRIGAM+RT+LPAL +A+VMNS + + E
Sbjct: 898 TRLKKNLIVKLMRSCREKEIKFLVRTLARNLRIGAMLRTVLPALGRAIVMNSFWNDHNKE 957
Query: 905 GKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAK 964
+EKL+ +SAA VEAYNILPSLD+++PSLM+K I FS STLSMVPG+PIKPMLAK
Sbjct: 958 LSESCFREKLEGVSAAVVEAYNILPSLDVVVPSLMDKDIEFSTSTLSMVPGIPIKPMLAK 1017
Query: 965 ITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIIN 1024
I GV + L Q KAFTCEYKYDGQRAQIHKL+DGTV IFSRNGDETTSRFPDL+ +I
Sbjct: 1018 IAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLDGTVCIFSRNGDETTSRFPDLVDVIK 1077
Query: 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
+F PAA TF+LDAEVVA DR NG K+MSFQELS+RERG KD++IT +S+KV++CVFVFD
Sbjct: 1078 QFSCPAAETFMLDAEVVATDRINGNKLMSFQELSTRERGSKDALITTESIKVEVCVFVFD 1137
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE----GDDNCLTSDVSLSK 1140
IMF NGEQLL LR+RR+ LK++F + + GY +YAKE+TV ++ L + +LS+
Sbjct: 1138 IMFVNGEQLLALPLRERRRRLKEVFPETRPGYLEYAKEITVSATVGAEEASLNNHDTLSR 1197
Query: 1141 INNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
IN FLEEA SSCEGI+VKSLDV+AGY P+KRSDSW
Sbjct: 1198 INAFLEEAFQSSCEGIMVKSLDVNAGYCPTKRSDSW 1233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619063|gb|EEE55195.1| hypothetical protein OsJ_03041 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/1253 (50%), Positives = 836/1253 (66%), Gaps = 118/1253 (9%)
Query: 3 SHPSDKNLTLDSTHLFLST-------QSSPPDSLI---FPPIPRTFPPSKHVPNTRFLID 52
S P K+L++ ++ LFLS+ S PP + P+P + PP+ +P +RFL+D
Sbjct: 6 SSPDSKSLSVATSTLFLSSLASLPSPHSEPPSASAASPLSPVPASVPPTALIPGSRFLVD 65
Query: 53 AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPI 112
AFR+A DF+ SYFLSHFHSDHYTGL PSW +G++FCS +T+RLL +L++ P+ + L
Sbjct: 66 AFRHAGDFTASYFLSHFHSDHYTGLGPSWRRGLVFCSPLTARLLVSVLSVPPQLVVVLDA 125
Query: 113 KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEF 172
+ V +DG VV V ANHCPGAVQFLF+ G N ERYVHTGDFRF ++M+ +P + EF
Sbjct: 126 GVRVTVDGWCVVAVDANHCPGAVQFLFRSSGPNA--ERYVHTGDFRFSQSMITEPNLLEF 183
Query: 173 AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232
G DAVFLDTTYCNPKF FP Q+ES+EYVVN + RV E + +RVL L+ATYV+GKE
Sbjct: 184 IGADAVFLDTTYCNPKFTFPPQKESLEYVVNSIKRVKEE-SRASGERVLCLIATYVVGKE 242
Query: 233 KILIEIFKKCGRKVCVDSRKMEVLRVLGYG-DSGVFTEDESETDVHVVGWN--------- 282
+IL+E+ ++CG K+ VDSRKME+L +LG G + GVFTED + TDVHV GWN
Sbjct: 243 RILLEVARRCGCKIHVDSRKMEILTLLGIGGEDGVFTEDAAATDVHVTGWNILGETWPYF 302
Query: 283 --------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDEL 334
EIMVERGY+K VGFVPTGW YE K+ FAVR+KD+ EIHLVPYSEHS+Y+EL
Sbjct: 303 RPNFVKMKEIMVERGYNKAVGFVPTGWMYETKKEGFAVRTKDSLEIHLVPYSEHSSYNEL 362
Query: 335 REYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEID 394
R+YVKFL PKRVIPTVG+D KLDSK A ++K+FAGLVDE A+K+EFLM FHR +
Sbjct: 363 RDYVKFLHPKRVIPTVGLDGGKLDSKEAFALQKHFAGLVDETANKQEFLMAFHRSSRNAT 422
Query: 395 ENVEEGAGSGSNEGLSK-EGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEE 453
E+ GLS+ EGEV ++ + LL +S E S ++
Sbjct: 423 LGPEDAV-----TGLSQQEGEV--------QELEEATLLPASLAFERSDS-----FQEKI 464
Query: 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYE------------ 501
T +M +E+ + LP+WV+Q+ ILDL+ SG ++V A ++F+E E +E
Sbjct: 465 TVEMKKELSDFLPSWVSQDLILDLLIKSGGDVVQAATDFFEKERDFFEEANVYNSETPKS 524
Query: 502 -----------------QEYKLPTIK---HS----------IKSTLSPSKRKK--TVTNN 529
QE L + K HS +KS LS +RK+ +
Sbjct: 525 EIDLSSDHGSSADASSQQEVPLFSQKPMDHSSKLLNLNAMRMKSNLSKRERKRGSNSADK 584
Query: 530 PKKKGKVPS---KMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKD--ENPLQ-S 583
PKKKG+ + ESSG KQ TIT++F + + S+ D + + + ++ N Q +
Sbjct: 585 PKKKGRSTAFKPLTESSGRKQSTITNYFARTMLAASKSDTSDKVTVDANQNNVRNDDQFT 644
Query: 584 NAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRL 643
+++ + + Q L+I++G S + A +LLEK KG+V++A+D++Y + + N +
Sbjct: 645 EVVESEKQSVSQLLQIVDGGMS-RESAISLLEKAKGDVNVAVDIFYSKTD-NSNVLENDM 702
Query: 644 EFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIE 703
+ +++ +K S+ L + SE + ++ VQ + D +SLP EKY PIE
Sbjct: 703 NIVTQNTENEMTDKSSSTGLLRNSSEATPKMPNLCVQSYVAQ-ADSVCISLPIEKYLPIE 761
Query: 704 HACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNK 763
HACW++GQPAPY+HLARTFDLVE E+GKIK +MLCNMFRSLLALSPDDVLPAVYLCTNK
Sbjct: 762 HACWTAGQPAPYLHLARTFDLVEREKGKIKTTAMLCNMFRSLLALSPDDVLPAVYLCTNK 821
Query: 764 IASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPP 823
I+ +HENIE A G++RSKI +MY GDLGDVAQECRQ Q LLAPP
Sbjct: 822 ISPDHENIE--------------ALGSSRSKIHEMYKTFGDLGDVAQECRQNQMLLAPPR 867
Query: 824 PLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMR 883
PL I+DV+S L K+S GSGST R+K L+++L+ SCRE EMKFLVRTLVRNLRIG MM+
Sbjct: 868 PLSIRDVFSTLRKLSGIAGSGSTGRRKILVLHLIRSCREMEMKFLVRTLVRNLRIGVMMK 927
Query: 884 TILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGI 943
TILPALA AVV++ S +E +K +LQ LS EAYN++P+LDLLIPSL+ +
Sbjct: 928 TILPALAHAVVIDGKYSNSPVLSLEGIKPQLQELSTEVAEAYNVIPNLDLLIPSLLREDT 987
Query: 944 GFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003
FSAS+L+M+ G PI PMLA+ITNG+ Q LKLF +AFTCEYKYDGQRAQIH+ DG+V+
Sbjct: 988 AFSASSLAMITGTPIPPMLARITNGLTQSLKLFNGRAFTCEYKYDGQRAQIHRSNDGSVQ 1047
Query: 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
IFSR E+TSRFPDL+ +I E C +FILDAEVV IDRK G K+MSFQELSSRERG
Sbjct: 1048 IFSRQMKESTSRFPDLVGMIKELCSIEVSSFILDAEVVGIDRKKGNKLMSFQELSSRERG 1107
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEM 1123
K S I I+++KVDICVFVFDIMF NG+ LL +LRQRRKY+ DLF EK G+F+ A+++
Sbjct: 1108 SKHSSIAIQNIKVDICVFVFDIMFCNGQSLLNCSLRQRRKYIHDLF-QEKPGHFELAQQL 1166
Query: 1124 TVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
TVE D+ + + +L ++N F + A SSCEGI++K LDVDAGYS SKR DSW
Sbjct: 1167 TVEADEASVDNSTTLERMNTFFKMACQSSCEGIMLKILDVDAGYSASKRCDSW 1219
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357130735|ref|XP_003567002.1| PREDICTED: uncharacterized protein LOC100835014 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1212 (48%), Positives = 794/1212 (65%), Gaps = 128/1212 (10%)
Query: 32 PPIPRTFPPSKHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEI 91
PP+P T P + +PN+ FL+DAFR+A DFSV+YFLSHFHSDHY GL PSW +G++FCS
Sbjct: 43 PPVPATVPSTALIPNSSFLVDAFRHAGDFSVAYFLSHFHSDHYAGLGPSWRRGLVFCSAP 102
Query: 92 TSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERY 151
T+RLL+ +L++ + I + I + +DG VV V ANHCPGAVQFLF PG N +RY
Sbjct: 103 TARLLASVLSVPSELIVSIDIGARITVDGWGVVAVDANHCPGAVQFLFTSPGPNT--KRY 160
Query: 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGE 211
VHTGDFR+ +M P + EF G DAVFLDTTYCNPKF FP QEESVEYVVN + +V E
Sbjct: 161 VHTGDFRYTDSMRSDPNLLEFVGADAVFLDTTYCNPKFTFPSQEESVEYVVNTIKQVKEE 220
Query: 212 LNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYG-DSGVFTED 270
+E +RVLFL+ATYV+GKEKIL+E+ ++CG + VDSRKM++L LG+G + GVFTED
Sbjct: 221 -SEAAGERVLFLIATYVVGKEKILLEVARRCGCMIHVDSRKMKILTGLGFGGEKGVFTED 279
Query: 271 ESETDVHVVGWN-----------------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVR 313
+ +DVHV GWN EIM+ERGY K V FVPTGW YE K+ FAVR
Sbjct: 280 AAASDVHVTGWNILGETWPYFRPNFVKMKEIMMERGYTKAVSFVPTGWMYETKKEGFAVR 339
Query: 314 SKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLV 373
KD+ +IHLVPYSEHS+YDELREYVKFL PK+VIPTVG+D KLD K A ++K+FAGLV
Sbjct: 340 VKDSLKIHLVPYSEHSSYDELREYVKFLHPKQVIPTVGVDGGKLDGKEAIALKKHFAGLV 399
Query: 374 DEMASKKEFLMGFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLD 433
DE A+K EFL FH + N E+ K + + E+ +S ++
Sbjct: 400 DETANKHEFLSVFHPRSICATLNHEDVLA-------------KCLRDQDGEEFASLPEIN 446
Query: 434 SSSRLEEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFY 493
++S L + + +T E+M +E+ + LP+WV+Q+QIL L+ SG ++V + S+F+
Sbjct: 447 NASELSDSSNIKIT-------EEMKKELSDFLPSWVSQDQILGLLMRSGGDVVQSASDFF 499
Query: 494 EHETQLYE-----------------------------QEYKLPTIKHSIKST----LSP- 519
E E +E QE L + K ST L+P
Sbjct: 500 ERERDFFEEANVSNNEMSKSGGIHTSDHGPSADVSSQQEVTLFSEKPMEPSTKLVNLTPV 559
Query: 520 ----------SKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVES 569
KR + N KKKG+ + ES G KQPTIT++F + + S+ +
Sbjct: 560 RMNSNLPKKERKRVSSTANKSKKKGRSAASTESGGRKQPTITNYFGRAMAAASKSETANK 619
Query: 570 KS----EECPKDENPLQ-SNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMA 624
+ E + EN Q ++ +KT+ + I+Q L+I++G+ S + A +LLEKTKG+V++A
Sbjct: 620 VTVDPYENIGEKENDTQLTDIVKTHEQGINQLLQIVDGSMSRES-AISLLEKTKGDVNVA 678
Query: 625 LDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSK 684
+D++Y + + VN + Q++ +K+ +S + + S+ + ++ VQ S
Sbjct: 679 VDMFYSKIQNN-NVPVNDKSIVPQNTQNEIIDKNSNSDIIQSSSQATPKMQNLYVQT-SL 736
Query: 685 ELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRS 744
D +SLP EKY PIEHACW++GQPAPY+HLARTFDLVE E+GKIK+ +MLCNMFRS
Sbjct: 737 AQADSMNISLPVEKYLPIEHACWTTGQPAPYLHLARTFDLVEREKGKIKSTAMLCNMFRS 796
Query: 745 LLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGD 804
L + SA+ E+ GT+RSKI +MY GD
Sbjct: 797 L----------------------------------IISALVESLGTSRSKIHEMYKTHGD 822
Query: 805 LGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKE 864
LGDVAQECRQ Q LLAPP PL I+DVYS L K+S +G GS R+K L+++L+ SCRE E
Sbjct: 823 LGDVAQECRQNQTLLAPPRPLSIRDVYSTLRKLSAISGGGSAGRRKILVLHLIRSCREME 882
Query: 865 MKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEA 924
MKFLVRTL RNLRIGAMM+TILPALA AVV++ + +E +K +LQ LS+ EA
Sbjct: 883 MKFLVRTLARNLRIGAMMKTILPALAHAVVLDGKCAKNTVVSLEGIKSELQGLSSEVTEA 942
Query: 925 YNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCE 984
YN++P++DLL+PSL+ +G F+AS+L+M+PG PI PMLA+ITNG+ Q LKLF +AFTCE
Sbjct: 943 YNVIPNMDLLVPSLLREGTTFAASSLAMLPGTPIPPMLARITNGLTQALKLFDGRAFTCE 1002
Query: 985 YKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAID 1044
YKYDGQRAQIH+L G+V+IFSR ++TSRFPDL+++I E C P +F+LDAEVV ID
Sbjct: 1003 YKYDGQRAQIHRLTGGSVQIFSRQMKDSTSRFPDLVNMIKELCSPEVASFVLDAEVVGID 1062
Query: 1045 RKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKY 1104
R G K+MSFQELSSRERG K S ITI+++KVDICVFVFDIMF NGE+LL Y LRQRR Y
Sbjct: 1063 RNKGNKLMSFQELSSRERGSKHSSITIQNIKVDICVFVFDIMFCNGERLLDYPLRQRRNY 1122
Query: 1105 LKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVD 1164
+ D ++ EK G+F+ A+++ VE ++ + + +L ++++F E+A SSCEGI++K+LDVD
Sbjct: 1123 IHD-YFQEKPGHFELAQQLIVEKNEASVDNSSTLHRMSSFFEKACQSSCEGIMLKTLDVD 1181
Query: 1165 AGYSPSKRSDSW 1176
AGYS SKR DSW
Sbjct: 1182 AGYSASKRCDSW 1193
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1176 | ||||||
| UNIPROTKB|A8J921 | 1384 | CHLREDRAFT_176829 "Predicted p | 0.221 | 0.188 | 0.316 | 6.7e-97 | |
| UNIPROTKB|F1M624 | 912 | Lig1 "DNA ligase" [Rattus norv | 0.556 | 0.718 | 0.316 | 2e-81 | |
| UNIPROTKB|F1M8E6 | 913 | Lig1 "DNA ligase" [Rattus norv | 0.556 | 0.717 | 0.316 | 2e-81 | |
| MGI|MGI:101789 | 916 | Lig1 "ligase I, DNA, ATP-depen | 0.492 | 0.632 | 0.340 | 1.8e-80 | |
| UNIPROTKB|F6URE1 | 911 | LIG1 "DNA ligase" [Canis lupus | 0.409 | 0.527 | 0.358 | 5.3e-80 | |
| RGD|621424 | 918 | Lig1 "ligase I, DNA, ATP-depen | 0.573 | 0.735 | 0.309 | 1e-79 | |
| UNIPROTKB|B4DTU4 | 888 | LIG1 "DNA ligase" [Homo sapien | 0.545 | 0.721 | 0.315 | 1.8e-79 | |
| UNIPROTKB|F5GZ28 | 851 | LIG1 "DNA ligase" [Homo sapien | 0.403 | 0.556 | 0.361 | 5.4e-79 | |
| UNIPROTKB|P18858 | 919 | LIG1 "DNA ligase 1" [Homo sapi | 0.403 | 0.515 | 0.361 | 5.4e-79 | |
| UNIPROTKB|Q2TB12 | 801 | LIG1 "DNA ligase" [Homo sapien | 0.403 | 0.591 | 0.361 | 5.4e-79 |
| UNIPROTKB|A8J921 CHLREDRAFT_176829 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 87/275 (31%), Positives = 152/275 (55%)
Query: 708 SSGQ-PAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPD---DVLPAVYLCTNK 763
+SG+ P PY+H+A + + ++ L NMFRS+LA + D D++ A+YL T +
Sbjct: 611 ASGRGPTPYLHVALCLSALSSTTKRLAISDALTNMFRSVLAAADDPGRDLVAALYLVTGR 670
Query: 764 IASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXX 823
IA ++ ELN+GG+ V+ A++ A G + ++++ +Y GDLGDVA CR+TQ
Sbjct: 671 IAPEYDKTELNVGGATVSGALQAATGASAARLKQLYREHGDLGDVAAACRRTQSTLRNPA 730
Query: 824 XXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMR 883
+ + L ++ G G AR++++++ L+ +CR+ E++FLVRTL+ NLR+GA R
Sbjct: 731 PLLCGRLLAALRDVAADKGQGVAARRQAVVLGLLRACRDVEVRFLVRTLISNLRVGANWR 790
Query: 884 TILPALAQAVVMN----SSLEFSHEGKMENLK------EKLQSLSAAAVEAYNXXXXXXX 933
++L L +AV+++ +++ + +G +L++ AA +EAY+
Sbjct: 791 SVLAPLGRAVLLHQRATAAVAAAADGSATTAAVQSPAPAELEAAGAAVLEAYHTCPNFEI 850
Query: 934 XXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNG 968
+ GI + + GVP+KPMLA G
Sbjct: 851 LVPVLLRHGIEGLRTRCGLTLGVPLKPMLANACAG 885
|
|
| UNIPROTKB|F1M624 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 218/689 (31%), Positives = 347/689 (50%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPN 560
E E + P ++ +S SK+ + + + PS M+ S + P + K LP
Sbjct: 69 EDEDEAPGTPQ-VQKPVSDSKQSSPPSPDSCPENSSPS-MDISPSGFPKRRTA-RKQLPK 125
Query: 561 MSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGN 620
+ D +E +E+ K + +T E + + ++ E ++ E T+
Sbjct: 126 RTIQDTLEEHNEDKDKAAKKRKKEDTQTPTESLTEAEEVKQKEEQVEDQPTVPPEPTESP 185
Query: 621 VSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEEL-QHIT 675
S+ L +N + G + K E SK + + + V E+ Q +
Sbjct: 186 ESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARGAKPLSSFFTPRKPAVKTEVKQEES 243
Query: 676 DMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAM 735
D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +E ++K +
Sbjct: 244 DTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMV 303
Query: 736 SMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795
L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G I
Sbjct: 304 ETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESI 363
Query: 796 RDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVN 855
R GD+G VA+ R TQ + V++ C I+ TGS S ++K +I
Sbjct: 364 RAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKG 423
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM- 907
L +CR E +F+ R+L LR+G +++L ALAQAV + EF + +GK
Sbjct: 424 LFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTA 483
Query: 908 ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITN 967
E K L+ + + + G+ + PGVP+KPMLA T
Sbjct: 484 EARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTR 543
Query: 968 GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027
GV +VLK F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ + ++PD+IS I +
Sbjct: 544 GVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIK 603
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMF 1087
P+ +FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++
Sbjct: 604 HPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIY 658
Query: 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE 1147
NGE L L +RR+ L++ F + + G F +A + T D+ +I FLE+
Sbjct: 659 LNGESLARQPLSRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQ 707
Query: 1148 ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 708 SVKDSCEGLMVKTLDVDATYEIAKRSHNW 736
|
|
| UNIPROTKB|F1M8E6 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 218/689 (31%), Positives = 347/689 (50%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPN 560
E E + P ++ +S SK+ + + + PS M+ S + P + K LP
Sbjct: 70 EDEDEAPGTPQ-VQKPVSDSKQSSPPSPDSCPENSSPS-MDISPSGFPKRRTA-RKQLPK 126
Query: 561 MSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGN 620
+ D +E +E+ K + +T E + + ++ E ++ E T+
Sbjct: 127 RTIQDTLEEHNEDKDKAAKKRKKEDTQTPTESLTEAEEVKQKEEQVEDQPTVPPEPTESP 186
Query: 621 VSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEEL-QHIT 675
S+ L +N + G + K E SK + + + V E+ Q +
Sbjct: 187 ESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARGAKPLSSFFTPRKPAVKTEVKQEES 244
Query: 676 DMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAM 735
D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +E ++K +
Sbjct: 245 DTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMV 304
Query: 736 SMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795
L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G I
Sbjct: 305 ETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESI 364
Query: 796 RDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVN 855
R GD+G VA+ R TQ + V++ C I+ TGS S ++K +I
Sbjct: 365 RAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKG 424
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM- 907
L +CR E +F+ R+L LR+G +++L ALAQAV + EF + +GK
Sbjct: 425 LFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTA 484
Query: 908 ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITN 967
E K L+ + + + G+ + PGVP+KPMLA T
Sbjct: 485 EARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTR 544
Query: 968 GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027
GV +VLK F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ + ++PD+IS I +
Sbjct: 545 GVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIK 604
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMF 1087
P+ +FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++
Sbjct: 605 HPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIY 659
Query: 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE 1147
NGE L L +RR+ L++ F + + G F +A + T D+ +I FLE+
Sbjct: 660 LNGESLARQPLSRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQ 708
Query: 1148 ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 709 SVKDSCEGLMVKTLDVDATYEIAKRSHNW 737
|
|
| MGI|MGI:101789 Lig1 "ligase I, DNA, ATP-dependent" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 210/616 (34%), Positives = 320/616 (51%)
Query: 570 KSEECPKDENPLQSNAIKTYGE-EIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLY 628
K EE PK E+ ++ IK E E DQ +I +E K + L KT+ +
Sbjct: 153 KEEETPK-ESLAEAEDIKQKEEKEGDQ---LIVPSEPTKSPESVTLTKTENIPVCKAGVK 208
Query: 629 YDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMD 688
QE ++ K R + SS + K + +E Q + + +K +D
Sbjct: 209 LKPQEEEQSKPPARGAKTLSSFFTP--RKPA------VKTEVKQEESGTLRKEETKGTLD 260
Query: 689 PTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLAL 748
P + Y PIE ACW GQ P++ +ARTF+ +E ++K + L N+ RS++AL
Sbjct: 261 PANYNPSKNNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVAL 320
Query: 749 SPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDV 808
SP D+LP +YL N++ + +EL +G ++ A+ +A G IR GD+G V
Sbjct: 321 SPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLV 380
Query: 809 AQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFL 868
A+ R TQ I V++ C I+ TGS S A+K +I L +CR E +++
Sbjct: 381 AENSRSTQRLMLPPPPLTISGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARYI 440
Query: 869 VRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAA 920
R+L LR+G +++L ALAQAV + EF + +GK E K L+
Sbjct: 441 ARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMI 500
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
+ + + G+ + PGVP+KPMLA T GV +VLK F+
Sbjct: 501 LKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVD 560
Query: 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEV 1040
FTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD E
Sbjct: 561 FTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEA 620
Query: 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQ 1100
VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L +
Sbjct: 621 VAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVRQPLSR 675
Query: 1101 RRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKS 1160
RR+ L++ F + + G F + + T D +I FLE+++ SCEG++VK+
Sbjct: 676 RRQLLRENFVETE-GEFVFTTSLD--------TKDTE--QIAEFLEQSVKDSCEGLMVKT 724
Query: 1161 LDVDAGYSPSKRSDSW 1176
LDVDA Y +KRS +W
Sbjct: 725 LDVDATYEIAKRSHNW 740
|
|
| UNIPROTKB|F6URE1 LIG1 "DNA ligase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 5.3e-80, Sum P(2) = 5.3e-80
Identities = 181/505 (35%), Positives = 275/505 (54%)
Query: 680 QRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLC 739
Q +K +DP + Y PI+ ACW GQ PY+ +ARTF+ +E +++ + L
Sbjct: 247 QEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLS 306
Query: 740 NMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMY 799
N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G ++
Sbjct: 307 NLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLDSVKAEA 366
Query: 800 NRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCS 859
GD+G VA+ R TQ V++ I+ GS STA+K +I L +
Sbjct: 367 AEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKIDVIKGLFVA 426
Query: 860 CREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEFS----HEGK---MENLK 911
CR E +F+ R L LR+G +++L ALAQAV + EF GK E K
Sbjct: 427 CRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGRTAEARK 486
Query: 912 EKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQ 971
L+ + + + G+ + PGVP+KPMLA T GV +
Sbjct: 487 TWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSE 546
Query: 972 VLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031
VLK F+ AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+
Sbjct: 547 VLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV 606
Query: 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGE 1091
+FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE
Sbjct: 607 TSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDAA----EIQVQVCLYAFDLIYLNGE 661
Query: 1092 QLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS 1151
L+ L +RR+ L++ F + + G F +A + + D +I FLE+++
Sbjct: 662 SLVREPLSRRRQLLRENFVETE-GEFVFATSLDTKDTD----------QIAEFLEQSVKD 710
Query: 1152 SCEGIIVKSLDVDAGYSPSKRSDSW 1176
SCEG++VK+LDVDA Y +KRS +W
Sbjct: 711 SCEGLMVKTLDVDATYEIAKRSHNW 735
|
|
| RGD|621424 Lig1 "ligase I, DNA, ATP-dependent" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 1.0e-79, P = 1.0e-79
Identities = 221/713 (30%), Positives = 348/713 (48%)
Query: 478 ISSSGRNIVDAVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVP 537
+ GR + +S+ E E + + S +S SP N+P
Sbjct: 54 VKRPGRKVAQVLSSEGEDEDEAPGTPQVQKPVSDSKQS--SPPSPDSCPENSPVFNCSPS 111
Query: 538 SKMESSG-AKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQF 596
+ SG K+ T K LP + D +E +E+ K + +T E + +
Sbjct: 112 MDISPSGFPKRRTA----RKQLPKRTIQDTLEEPNEDKAKAVKKRKKEDPQTPPESLTEA 167
Query: 597 LKIINGNESLKGYAATLLEKTKGNVSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQS 652
++ E ++ E T+ S+ L +N + G + K E SK +
Sbjct: 168 EEVNQKEEQVEDQPTVPPEPTESPESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARG 225
Query: 653 DSCNKDCSSALEKIVSEEL-QHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQ 711
+ + V E+ Q +D + +K DPT + Y PIE ACW GQ
Sbjct: 226 AKPLSSFFTPRKPAVKTEVKQEESDTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQ 285
Query: 712 PAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI 771
P++ +ARTF+ +E ++K + L N+ RS++ALSP D+LP +YL N++ + +
Sbjct: 286 KVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGL 345
Query: 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVY 831
EL +G ++ A+ +A G IR GD+G VA+ R TQ + V+
Sbjct: 346 ELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPSPPLTVSGVF 405
Query: 832 SMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQ 891
+ C I+ TGS S A+K +I L +CR E +F+ R+L LR+G +++L ALAQ
Sbjct: 406 TKFCDIARLTGSASMAKKMDIIKGLFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQ 465
Query: 892 AVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGI 943
A + EF + +GK E K L+ + + + G+
Sbjct: 466 AGSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGL 525
Query: 944 GFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003
+ PGVP+KPMLA T GV +VLK F+ FTCEYKY GQRAQIH L G V+
Sbjct: 526 ESLPEHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQRAQIHVLEGGEVK 585
Query: 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
IFSRN ++ + ++PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R
Sbjct: 586 IFSRNQEDNSGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRK 644
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEM 1123
D+ ++V +C++ FD+++ NGE L L +RR+ L++ F + + G F +A +
Sbjct: 645 EVDA----SEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETE-GEFVFATSL 699
Query: 1124 TVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
T D+ +I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 700 D--------TKDIE--QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 742
|
|
| UNIPROTKB|B4DTU4 LIG1 "DNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.8e-79, P = 1.8e-79
Identities = 213/675 (31%), Positives = 335/675 (49%)
Query: 515 STLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEEC 574
S +SP + + NN P M+SS + P + K LP + +V+E +SE+
Sbjct: 58 SQVSPPRPATSPENNASLSDTSP--MDSSPSGIPKRRTA-RKQLPKRTIQEVLEEQSEDE 114
Query: 575 PKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634
++ + +T E + + ++ E G T K S A E
Sbjct: 115 DREAKRKKEEEEETPKESLTE-AEVATEKEGEDGDQPTTPPKPL-KTSKAETPTESVSEP 172
Query: 635 DRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKE-----LMDP 689
+ E + + K SS + + + P KE +DP
Sbjct: 173 EVATKQELQEEEEQTKPPRRAPKTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGPLDP 232
Query: 690 TLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALS 749
+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++ALS
Sbjct: 233 SGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALS 292
Query: 750 PDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVA 809
P D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G VA
Sbjct: 293 PPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVA 352
Query: 810 QECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLV 869
+ R TQ V+S I+ TGS STA+K +I L +CR E +F+
Sbjct: 353 ENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIA 412
Query: 870 RTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAAA 921
R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 413 RSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMIL 472
Query: 922 VEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAF 981
+ + + G+ + PG+P+KPMLA T G+ +VLK F+ AF
Sbjct: 473 KQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAF 532
Query: 982 TCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVV 1041
TCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD E V
Sbjct: 533 TCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAV 592
Query: 1042 AIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQR 1101
A DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L +R
Sbjct: 593 AWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPLSRR 647
Query: 1102 RKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSL 1161
R+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++VK+L
Sbjct: 648 RQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMVKTL 696
Query: 1162 DVDAGYSPSKRSDSW 1176
DVDA Y +KRS +W
Sbjct: 697 DVDATYEIAKRSHNW 711
|
|
| UNIPROTKB|F5GZ28 LIG1 "DNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 193 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 252
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 253 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 312
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 313 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 372
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 373 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 432
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 433 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 492
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 493 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 552
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 553 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 607
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 608 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 656
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 657 KTLDVDATYEIAKRSHNW 674
|
|
| UNIPROTKB|P18858 LIG1 "DNA ligase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
|
|
| UNIPROTKB|Q2TB12 LIG1 "DNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.5.1.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1176 | |||
| PLN03113 | 744 | PLN03113, PLN03113, DNA ligase 1; Provisional | 1e-125 | |
| cd07900 | 219 | cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation | 7e-94 | |
| TIGR00574 | 514 | TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 | 6e-71 | |
| PRK01109 | 590 | PRK01109, PRK01109, ATP-dependent DNA ligase; Prov | 2e-69 | |
| pfam01068 | 195 | pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas | 2e-47 | |
| COG1793 | 444 | COG1793, CDC9, ATP-dependent DNA ligase [DNA repli | 3e-47 | |
| cd07901 | 207 | cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla | 1e-46 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 4e-45 | |
| cd07898 | 201 | cd07898, Adenylation_DNA_ligase, Adenylation domai | 2e-36 | |
| cd07906 | 190 | cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla | 9e-31 | |
| cd07903 | 225 | cd07903, Adenylation_DNA_ligase_IV, Adenylation do | 5e-30 | |
| PRK03180 | 508 | PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | 9e-29 | |
| pfam07522 | 107 | pfam07522, DRMBL, DNA repair metallo-beta-lactamas | 3e-24 | |
| cd07902 | 213 | cd07902, Adenylation_DNA_ligase_III, Adenylation d | 7e-20 | |
| TIGR02779 | 298 | TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l | 4e-19 | |
| PRK09632 | 764 | PRK09632, PRK09632, ATP-dependent DNA ligase; Revi | 2e-17 | |
| PRK05972 | 860 | PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | 3e-17 | |
| TIGR02776 | 552 | TIGR02776, NHEJ_ligase_prk, DNA ligase D | 4e-13 | |
| cd06846 | 182 | cd06846, Adenylation_DNA_ligase_like, Adenylation | 7e-13 | |
| cd07897 | 207 | cd07897, Adenylation_DNA_ligase_Bac1, Adenylation | 2e-12 | |
| PRK09633 | 610 | PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | 2e-12 | |
| PRK09247 | 539 | PRK09247, PRK09247, ATP-dependent DNA ligase; Vali | 4e-11 | |
| cd08039 | 235 | cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio | 8e-11 | |
| cd07905 | 194 | cd07905, Adenylation_DNA_ligase_LigC, Adenylation | 4e-10 | |
| PRK07636 | 275 | PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | 6e-10 | |
| TIGR04120 | 526 | TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent | 4e-09 | |
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 6e-09 | |
| pfam12706 | 197 | pfam12706, Lactamase_B_2, Beta-lactamase superfami | 2e-08 | |
| COG0595 | 555 | COG0595, COG0595, mRNA degradation ribonucleases J | 7e-06 | |
| PRK08224 | 350 | PRK08224, ligC, ATP-dependent DNA ligase; Reviewed | 8e-05 | |
| smart00849 | 177 | smart00849, Lactamase_B, Metallo-beta-lactamase su | 9e-05 | |
| COG1782 | 637 | COG1782, COG1782, Predicted metal-dependent RNase, | 3e-04 | |
| pfam07521 | 43 | pfam07521, RMMBL, RNA-metabolising metallo-beta-la | 4e-04 | |
| TIGR03675 | 630 | TIGR03675, arCOG00543, arCOG00543 universal archae | 6e-04 | |
| pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase sup | 0.002 |
| >gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional | Back alignment and domain information |
|---|
Score = 402 bits (1034), Expect = e-125
Identities = 192/501 (38%), Positives = 306/501 (61%), Gaps = 22/501 (4%)
Query: 678 SVQRPSKELMDPTLVSL--PPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAM 735
++ +P K+ M + L P +DP + A W G+ P++ +A FDL+ E G+I
Sbjct: 92 TLSKPKKDEMKSKIGLLKKKPNDFDPEKVAYWEKGERVPFLFVALAFDLISNETGRIVIT 151
Query: 736 SMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795
++CNM R+++A +P+D++ VYL N+IA HE +EL IG + + A+ EA G ++
Sbjct: 152 DIVCNMLRTVMATTPEDLVAVVYLLANRIAPAHEGVELGIGEATIIKALAEAFGRTEKQV 211
Query: 796 RDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVN 855
+ Y LGDLG VA+ R +Q+++ P PL + V++ +I+ ++G S +KK+ I
Sbjct: 212 KKQYKELGDLGLVAKASRSSQSMMRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKA 271
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQ 915
L+ + + E +L+R L LRIG +T+L AL QA V N H N++ L+
Sbjct: 272 LLVAATDCEPLYLIRLLQTKLRIGLAGQTLLAALGQAAVYNE----EHSTPPPNIQSPLE 327
Query: 916 SLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKL 975
+ + Y++LP D ++P+L++ G+ T S PGVP+ PMLAK T GV +++
Sbjct: 328 EAAKIVKQVYSVLPVYDKIVPALLSGGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVNK 387
Query: 976 FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFI 1035
FQ+ FTCEYKYDG+RAQIH L DG+V I+SRN + T ++PD++ I+ KP+ +FI
Sbjct: 388 FQDMEFTCEYKYDGERAQIHFLEDGSVEIYSRNAERNTGKYPDVVVAISRLKKPSVKSFI 447
Query: 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLG 1095
LD E+VA DR+ KI+ FQ LS+R R + + +KVD+C+F FD+++ NG+ L+
Sbjct: 448 LDCELVAYDREKK-KILPFQILSTRARKN----VVMSDIKVDVCIFAFDMLYLNGQPLIQ 502
Query: 1096 YTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEG 1155
L+ RR++L + F +E G+FQ+A +T ++D L +I FL+ A+ +SCEG
Sbjct: 503 EQLKIRREHLYESF-EEDPGFFQFATAIT--------SND--LEEIQKFLDAAVDASCEG 551
Query: 1156 IIVKSLDVDAGYSPSKRSDSW 1176
+I+K+L+ DA Y PSKRS++W
Sbjct: 552 LIIKTLNKDATYEPSKRSNNW 572
|
Length = 744 |
| >gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 7e-94
Identities = 110/228 (48%), Positives = 151/228 (66%), Gaps = 16/228 (7%)
Query: 949 TLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRN 1008
+ PG+P+KPMLAK T GV +VL F++K FTCEYKYDG+RAQIH L DG V+IFSRN
Sbjct: 1 HCKLTPGIPVKPMLAKPTKGVSEVLDRFEDKEFTCEYKYDGERAQIHLLEDGKVKIFSRN 60
Query: 1009 GDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSV 1068
+ T ++PD+++++ + KP+ +FILD+E+VA DR+ G KI+ FQ LS+R+R D
Sbjct: 61 LENNTEKYPDIVAVLPKSLKPSVKSFILDSEIVAYDRETG-KILPFQVLSTRKRKDVD-- 117
Query: 1069 ITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGD 1128
+KV +CVF FD+++ NGE LL LR+RR+ L LF E G FQ+A E
Sbjct: 118 --ANDIKVQVCVFAFDLLYLNGESLLKKPLRERRELLHSLF-KEVPGRFQFATSKDSE-- 172
Query: 1129 DNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+I FLEEA+ ++CEG++VK+LD DA Y PSKRS +W
Sbjct: 173 --------DTEEIQEFLEEAVKNNCEGLMVKTLDSDATYEPSKRSHNW 212
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. DNA ligase I is the main replicative ligase in eukaryotes. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 219 |
| >gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-71
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 45/408 (11%)
Query: 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLA-PPPPLLIKDV 830
E IG L+ AI G + +I + GDLG+V + Q + P PL +K+V
Sbjct: 1 EYGIGEKLLIKAISSILGIPKDEIEEKVLEDGDLGEVIEGLFSKQKQTSFFPAPLTVKEV 60
Query: 831 YSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALA 890
Y +L I+ +G GS +K L+ +L+ E K+L+R ++ +LRIG +TIL ALA
Sbjct: 61 YEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRIGIAEKTILDALA 120
Query: 891 QAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTL 950
+A +++ A+N+ L + L+ +G+ L
Sbjct: 121 KAF----------LLSPPDVE-----------RAFNLTNDLGKVAKILLEEGLRGLDKDL 159
Query: 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD 1010
S+ G+P KPMLA+ + + LK N F EYKYDG+R Q+HK +IFSR +
Sbjct: 160 SIQLGIPFKPMLAERAKSIEEALKKKGNG-FYVEYKYDGERVQVHK-DGDKFKIFSRRLE 217
Query: 1011 ETTSRFPD--LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSV 1068
T +P+ I F P + ILD E+VAID + G K + FQ L R+R
Sbjct: 218 NYTYAYPEIFTEFIKEAF--PGIKSCILDGEMVAIDPETG-KPLPFQTLLRRKR---KYD 271
Query: 1069 ITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGD 1128
I KV +C+FVFDI++ NGE L+ L +RR+ L+ + + A+ V
Sbjct: 272 IKAMEQKVPVCLFVFDILYLNGESLIDEPLIERREILESILKPIP-NRIEIAEMKIVSNV 330
Query: 1129 DNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ ++ FL EA+ CEG+++K D+ + Y P KR W
Sbjct: 331 E----------ELEKFLNEAISEGCEGLMLK--DLKSIYEPGKRGWLW 366
|
All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 514 |
| >gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 2e-69
Identities = 140/470 (29%), Positives = 228/470 (48%), Gaps = 52/470 (11%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLP-AVYLCTNKIASNHENIE 772
+ LA F+ +E + + +L ++ + +P +++ VYL K+ + +E
Sbjct: 2 EFSELAEYFERLEKTTSRTQLTKLLADLLKK----TPPEIIDKVVYLIQGKLWPDWLGLE 57
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC---RQTQALLAPPP--PLLI 827
L +G L+ AI A G + ++ ++Y + GDLG+VA+ ++ ++LLA PL +
Sbjct: 58 LGVGEKLLIKAISMATGISEKEVENLYKKTGDLGEVARRLKSKKKQKSLLAFFSKEPLTV 117
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
K+VY L KI++ TG GS K L+ L+ E K++ R + LR+G TIL
Sbjct: 118 KEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKYIARFVEGRLRLGVGDATILD 177
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE-AYNILPSLDLLIPSLMNKGIGFS 946
ALA A F E VE AYN+ L + L GI +
Sbjct: 178 ALAIA--------FGGAVARE------------LVERAYNLRADLGYIAKILAEGGIE-A 216
Query: 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFS 1006
+ G+PI+PMLA+ + ++LK +A EYKYDG+RAQIHK V+IFS
Sbjct: 217 LKKVKPQVGIPIRPMLAERLSSPKEILKKMGGEAL-VEYKYDGERAQIHKK-GDKVKIFS 274
Query: 1007 RNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKD 1066
R + T ++PD++ E K I++ E+VA+D + G ++ FQEL R+R
Sbjct: 275 RRLENITHQYPDVVEYAKEAIKA--EEAIVEGEIVAVDPETG-EMRPFQELMHRKR---K 328
Query: 1067 SVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126
I + + VF+FD+++ +GE L L +RRK L+++ ++ + A+
Sbjct: 329 YDIEEAIKEYPVNVFLFDLLYVDGEDLTDKPLPERRKKLEEIV--KENDKVKLAE----- 381
Query: 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+T DV ++ F A+ CEG++ KSL D+ Y R W
Sbjct: 382 ---RIITDDV--EELEKFFHRAIEEGCEGLMAKSLGKDSIYQAGARGWLW 426
|
Length = 590 |
| >gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-47
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 26/217 (11%)
Query: 960 PMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDL 1019
PMLAK + + K F AF E KYDG+R QIHK G V++ SRNG T+ +P+L
Sbjct: 1 PMLAKPFKSIEEA-KKFGGGAFIVEEKYDGERVQIHK-DGGEVKLLSRNGKPITATYPEL 58
Query: 1020 ISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDIC 1079
+ ++E P +FILD E+VA+D +I+ FQ L++R++ K K +C
Sbjct: 59 LEFLDEAFFPDVKSFILDGEIVAVDPTG--RILPFQTLTTRKKK--------KVKKEPLC 108
Query: 1080 VFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLS 1139
FVFD+++ +GE L L++RR+ L++ F + A+ T+E +D +
Sbjct: 109 FFVFDVLYLDGESLTDEPLKERRELLEEYFKIP--VRIEIAE--TIETND--------IE 156
Query: 1140 KINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ FLEEA+ EG++VK D D+ Y P KRS +W
Sbjct: 157 ELKEFLEEAIKEGLEGVVVK--DPDSPYEPGKRSSNW 191
|
This domain belongs to a more diverse superfamily, including pfam01331 and pfam01653. Length = 195 |
| >gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-47
Identities = 100/397 (25%), Positives = 156/397 (39%), Gaps = 90/397 (22%)
Query: 781 TSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQ 840
A+ E G +I + Y GDLG+ A LL ++ VY L K++ +
Sbjct: 1 RKAVSEEDG--EYEIFEGYIPQGDLGEGA-------VLLWD-----VEGVYLTLSKVAER 46
Query: 841 TGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLE 900
TG +E+ + L+ IG T+L ALA+AV
Sbjct: 47 TG------------------QERLLWL----LLDEADIGVSEGTVLDALAEAV------- 77
Query: 901 FSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKP 960
E+ IL +L +PG P+ P
Sbjct: 78 -----------ERAYLWHNDLGALAKILLTLGAEALDKATL-----------LPGRPLPP 115
Query: 961 MLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLI 1020
MLA + + + L + E K+DG R QIH G VR++SRNG++ T RFPD++
Sbjct: 116 MLAPMLASLEEALPRDGGD-WAYEEKFDGYRVQIHID-GGKVRLYSRNGEDWTGRFPDIL 173
Query: 1021 -SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDIC 1079
+ A FILD E+V +D + + FQ L R R D + + +
Sbjct: 174 EAAAEAL---PADDFILDGEIVVLDEE---GRLDFQALQQRLRRKYD--VAKLRRETPLV 225
Query: 1080 VFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLS 1139
+F FD+++ +GE L G L +RR L++L + + A+ + +
Sbjct: 226 LFAFDLLYLDGEDLRGLPLEERRALLEELV--KSSDKIEIAERIPFSDAEE--------- 274
Query: 1140 KINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
FLE A+ EG++ K D+ Y RS+ W
Sbjct: 275 -GEAFLEAAIELGLEGVVAKRP--DSPYRAGGRSNKW 308
|
Length = 444 |
| >gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 1e-46
Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 22/223 (9%)
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
G P++PMLA+ V + L +A EYKYDG R QIHK VRIFSR ++ T
Sbjct: 1 VGRPVRPMLAQRAPSVEEALIKEGGEAA-VEYKYDGIRVQIHK-DGDEVRIFSRRLEDIT 58
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
+ P+++ + E A ILD E VA D +G + + FQE R R K V
Sbjct: 59 NALPEVVEAVREL--VKAEDAILDGEAVAYD-PDG-RPLPFQETLRRFRR-KYDVEEAAE 113
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
++ + +F+FDI++ +GE LL L +RRK L+++ + A V D
Sbjct: 114 -EIPLTLFLFDILYLDGEDLLDLPLSERRKILEEIV--PETEAILLAP-RIVTDDPE--- 166
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ F EEAL + EG++VKSL D+ Y +R +W
Sbjct: 167 ------EAEEFFEEALEAGHEGVMVKSL--DSPYQAGRRGKNW 201
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 207 |
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-45
Identities = 67/179 (37%), Positives = 101/179 (56%), Gaps = 4/179 (2%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIEL 773
P+ LA F+ +EA +++ ++L N RS PDD+ P VYL + ++E EL
Sbjct: 2 PFAELAELFEKIEATSSRLEKTAILANFLRSA---RPDDLPPVVYLLLGLLFPDYEGREL 58
Query: 774 NIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ-ALLAPPPPLLIKDVYS 832
IG L+ AI EA G + I ++Y ++GDLG+VA+E + Q L PPPL +++VY
Sbjct: 59 GIGEKLLIKAISEATGLSEDSIEELYKKVGDLGEVAEELLKKQKQTLFKPPPLTVQEVYE 118
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQ 891
L KI+ +G GS K L+ L+ E K+L+R ++ LRIG +T+L ALA
Sbjct: 119 TLDKIAKLSGKGSQDEKIDLLKKLLSRATPLEAKYLIRLILGELRIGVGEKTVLDALAP 177
|
This region is found in many but not all ATP-dependent DNA ligase enzymes (EC:6.5.1.1). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I, and in Saccharomyces cerevisiae, this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In vaccinia virus this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation. Length = 177 |
| >gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-36
Identities = 74/219 (33%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP 1017
IKPMLA K + A E KYDG RAQ+HK G V IFSR+ ++ T +FP
Sbjct: 1 IKPMLAHPEESAEAA-KAKKPAAAWVEDKYDGIRAQVHK-DGGRVEIFSRSLEDITDQFP 58
Query: 1018 DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVD 1077
+L + K FILD E++A D G + F EL R G K + V
Sbjct: 59 ELAAAA----KALPHEFILDGEILAWDDNRG---LPFSELFKR-LGRKFRDKFLDE-DVP 109
Query: 1078 ICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVS 1137
+ + FD+++ NGE LL LR+RR+ L++LF E G + A + VE S
Sbjct: 110 VVLMAFDLLYLNGESLLDRPLRERRQLLEELF-VEIPGRIRIAPALPVE----------S 158
Query: 1138 LSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ A EG+++K D D+ Y P +R +W
Sbjct: 159 AEELEAAFARARARGNEGLMLK--DPDSPYEPGRRGLAW 195
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core unit contains six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 201 |
| >gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 9e-31
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP 1017
I+PMLA + + P + + E K+DG RA + G VR++SRNG + T+RFP
Sbjct: 1 IEPMLATLVDEPPD------GEDWLYEIKWDGYRALAR-VDGGRVRLYSRNGLDWTARFP 53
Query: 1018 DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVD 1077
+L + +LD E+V +D FQ L +R R + + V
Sbjct: 54 ELAEALAAL---PVRDAVLDGEIVVLDEG---GRPDFQALQNRLRLRRRL-----ARTVP 102
Query: 1078 ICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVS 1137
+ + FD+++ +GE L G L +R++ L++L + ++ EG
Sbjct: 103 VVYYAFDLLYLDGEDLRGLPLLERKELLEELL-PAGSPRLRVSE--HFEGGG-------- 151
Query: 1138 LSKINNFLEEALHSSC----EGIIVKSLDVDAGYSPSKRSDSW 1176
++C EGI+ K D+ Y +RS W
Sbjct: 152 --------AALFAAACELGLEGIVAKRA--DSPYRSGRRSRDW 184
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. LigD consists of a central ATP-dependent DNA ligase catalytic core unit fused to a C-terminal polymerase domain and an N-terminal 3'-phosphoesterase (PE) module. LigD catalyzes the end-healing and end-sealing steps during non-homologous end joining. Length = 190 |
| >gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-30
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
P +PMLA+ N +KL + K F E K DG+R Q+HK + FSRNG++ T
Sbjct: 8 LFSPFRPMLAERLNIGYVEIKLLKGKPFYIETKLDGERIQLHK-DGNEFKYFSRNGNDYT 66
Query: 1014 SRFPD------LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ L I+ P + ILD E+V D++ + F G
Sbjct: 67 YLYGASLTPGSLTPYIHLAFNPKVKSCILDGEMVVWDKETKR-FLPF--------GTLKD 117
Query: 1068 VITIKSVKVD---ICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMT 1124
V ++ V+ C VFDI++ NG+ L L +R+K L+ + G + K
Sbjct: 118 VAKLREVEDSDLQPCFVVFDILYLNGKSLTNLPLHERKKLLEKII-TPIPGRLEVVKRTE 176
Query: 1125 VEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ +I L EA+ + EGI+VK L D+ Y P KR W
Sbjct: 177 AS----------TKEEIEEALNEAIDNREEGIVVKDL--DSKYKPGKRGGGW 216
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligase in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent protein kinase. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 225 |
| >gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 9e-29
Identities = 104/383 (27%), Positives = 166/383 (43%), Gaps = 65/383 (16%)
Query: 806 GDVAQECRQT----QALLAPPPP-----LLIKDVYSMLCKISVQTGSGSTARKKSLIVNL 856
G++ Q R+ L + P P L + DV + L +I+ G+GS AR+ +L+ L
Sbjct: 47 GELRQ--RRIGVGWATLRSLPAPAAEPTLTVADVDAALSEIAAVAGAGSQARRAALLAAL 104
Query: 857 MCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQS 916
+ E E +FL R L LR GA+ + A+A+A
Sbjct: 105 FAAATEDEQRFLRRLLTGELRQGALDGVMADAVARAA----------------------G 142
Query: 917 LSAAAVE-AYNILPSLDLLIPSLMNKGI-GFSASTLSMVPGVPIKPMLAKITNGVPQVLK 974
+ AAAV A + L + + + G + L + G P++PMLA+ V + L
Sbjct: 143 VPAAAVRRAAMLAGDLPAVAAAALTGGAAALARFRLEV--GRPVRPMLAQTATSVAEALA 200
Query: 975 LFQNKAFTCEYKYDGQRAQIHKLVDG-TVRIFSRNGDETTSRFPDLISIINEFCKPAAGT 1033
A E K DG R Q+H+ DG VR+++R D+ T+R P+++ + P +
Sbjct: 201 RLGGPA-AVEAKLDGARVQVHR--DGDDVRVYTRTLDDITARLPEVVEAVRAL--PVR-S 254
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQL 1093
+LD E +A+ R +G + FQ +SR G+ + + F FD + +G L
Sbjct: 255 LVLDGEAIAL-RPDG-RPRPFQVTASRF--GRRVDVAAARATQPLSPFFFDALHLDGRDL 310
Query: 1094 LGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSC 1153
L L +R L L V +T+D + + FL AL +
Sbjct: 311 LDAPLSERLAALDALV----------PAAHRV---PRLVTADPAAAA--AFLAAALAAGH 355
Query: 1154 EGIIVKSLDVDAGYSPSKRSDSW 1176
EG++VKSL DA Y+ +R W
Sbjct: 356 EGVMVKSL--DAPYAAGRRGAGW 376
|
Length = 508 |
| >gnl|CDD|219448 pfam07522, DRMBL, DNA repair metallo-beta-lactamase | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 3e-24
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 264 SGVFTEDESETDVHVVGWNEIMVER----------GYDKVVGFVPTGWTYEVKRNKFAVR 313
V T D S T +HVV +I E +D V+ PTGWT+ + R
Sbjct: 4 LSVLTTDPSSTRIHVVPMGKIRYEALLSYLKAFKEHFDSVIAIRPTGWTFRPPKTNVLDR 63
Query: 314 ---SKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMD 353
S+ I+ VPYSEHS++ EL+++V FL+PK++IPTV +
Sbjct: 64 IKPSRGKITIYGVPYSEHSSFSELKDFVSFLRPKKIIPTVNVG 106
|
The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair. Length = 107 |
| >gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 7e-20
Identities = 68/224 (30%), Positives = 102/224 (45%), Gaps = 40/224 (17%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRN----GDET 1012
P+KPMLA+ V +K N E KYDG+R Q+HK D + FSR+
Sbjct: 13 PVKPMLAEACKSVEDAMKKCPN-GMYAEIKYDGERVQVHKQGD-NFKFFSRSLKPVLPHK 70
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG-KDSVITI 1071
+ F D I F P + ILD+EV+ +D K G K + F L ++ KD+ +
Sbjct: 71 VAHFKDYIP--KAF--PHGHSMILDSEVLLVDTKTG-KPLPFGTLGIHKKSAFKDANV-- 123
Query: 1072 KSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK---MGYFQYAKEMTVEGD 1128
C+FVFD ++ NGE L+ LR+RRK L+D + M K + D
Sbjct: 124 -------CLFVFDCLYYNGESLMDKPLRERRKILEDNMVEIPNRIM--LSEMKFVKKADD 174
Query: 1129 DNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+ + + V + EG+++K D+ + Y P KR
Sbjct: 175 LSAMIARV------------IKEGLEGLVLK--DLKSVYEPGKR 204
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nucleotide Base Excision Repair (BER). The mitochondrial form of DNA ligase III originates from the nucleolus and is involved in the mitochondrial DNA repair pathway. This isoform is expressed by a second start site on the DNA ligase III gene. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many active site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 213 |
| >gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 52/197 (26%), Positives = 77/197 (39%), Gaps = 39/197 (19%)
Query: 984 EYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC--KPAAGTFILDAEVV 1041
E KYDG R + G VR+ SRNG + T +FP L +LD E+V
Sbjct: 17 EVKYDGYRCLAR-IEGGKVRLISRNGHDWTEKFPIL-----AAALAALPILPAVLDGEIV 70
Query: 1042 AIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQR 1101
+D F L +R R G+D + FD+++ +GE L L +R
Sbjct: 71 VLDESG---RSDFSALQNRLRAGRDR---------PATYYAFDLLYLDGEDLRDLPLSER 118
Query: 1102 RKYLKDLF--YDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVK 1159
+K L++L + +Y+ +G LE A EG++ K
Sbjct: 119 KKLLEELLKAIKGPLAPDRYSVHFEGDGQA--------------LLEAACRLGLEGVVAK 164
Query: 1160 SLDVDAGYSPSKRSDSW 1176
D+ Y S RS W
Sbjct: 165 --RRDSPYR-SGRSADW 178
|
DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the ligase domain. Length = 298 |
| >gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-17
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 58/231 (25%)
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
+ PMLA T G LK AF E K+DG R + + G +R+ SR+G + T
Sbjct: 457 EADDLAPMLA--TAGTVAGLKA-SQWAF--EGKWDGYRL-LAEADHGALRLRSRSGRDVT 510
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
+ +P+L ++ + A +LD E+VA+D + SF L +R R
Sbjct: 511 AEYPELAALAEDL---ADHHVVLDGEIVALDDSG---VPSFGLLQNRGRD---------- 554
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTV----EGDD 1129
+ + FD+++ +G LL R RRK L+ L +TV GD
Sbjct: 555 --TRVEFWAFDLLYLDGRSLLRKPYRDRRKLLEALAPS--------GGSLTVPPLLPGD- 603
Query: 1130 NCLTSDVSLSKINNFLEEALHSS----CEGIIVKSLDVDAGYSPSKRSDSW 1176
EAL S EG++ K D + Y P +RS SW
Sbjct: 604 ---------------GAEALAYSRELGWEGVVAKRRD--STYQPGRRSSSW 637
|
Length = 764 |
| >gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-17
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 984 EYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAI 1043
E K+DG R + G VR+F+RNG + T++ P L P A LD E+V +
Sbjct: 254 EIKFDGYRILAR-IEGGEVRLFTRNGLDWTAKLPALAKAAAALGLPDA---WLDGEIVVL 309
Query: 1044 DRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRK 1103
D +G + FQ L + G+ D+ F FD+ F GE L L +RR
Sbjct: 310 DE-DG--VPDFQALQNAFDEGRTE---------DLVYFAFDLPFLGGEDLRELPLEERRA 357
Query: 1104 YLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDV 1163
L+ L + ++++ GD L A EG+I K
Sbjct: 358 RLRALLEAARSDRIRFSEHFDAGGDA--------------VLASACRLGLEGVIGKRA-- 401
Query: 1164 DAGYSPSKRSDSW 1176
D+ Y S RS+ W
Sbjct: 402 DSPYV-SGRSEDW 413
|
Length = 860 |
| >gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 34/172 (19%)
Query: 1006 SRNGDETTSRFPDLISIIN-EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG 1064
+RNG + T RFP+++ + PA +D E+V +D F L + G
Sbjct: 1 TRNGHDWTKRFPEIVKALALLKLLPA----WIDGEIVVLD--ERG-RADFAALQNALSAG 53
Query: 1065 KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMT 1124
+ + FD++F +GE L L +R+K LK L + +Y+
Sbjct: 54 ASR---------PLTYYAFDLLFLSGEDLRDLPLEERKKRLKQLLKAQDEPAIRYS--DH 102
Query: 1125 VEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
E D + L LE A EG++ K +D+ Y S RS W
Sbjct: 103 FESDGDAL------------LESACRLGLEGVVSK--RLDSPYR-SGRSKDW 139
|
Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by This model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This model models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku [DNA metabolism, DNA replication, recombination, and repair]. Length = 552 |
| >gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 41/213 (19%), Positives = 66/213 (30%), Gaps = 40/213 (18%)
Query: 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPD 1018
+L I + + + KYDG+RA I L +G V SR G E
Sbjct: 1 PQLLNPILEEALSEY--DEQDEYYVQEKYDGKRALIVAL-NGGVFAISRTGLEVPLPSIL 57
Query: 1019 LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDI 1078
+ FILD E+V +R +
Sbjct: 58 IPGRELL---TLKPGFILDGELVVENR--------------------------EVANPKP 88
Query: 1079 CVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSL 1138
+ FD++ +G L R YLK L ++ K + +E +
Sbjct: 89 TYYAFDVVPLSGVGLRDLPYSDRFAYLKSLL--KEFEGLDPVKLVPLE------NAPSYD 140
Query: 1139 SKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171
+++ LE+ EG++ K D P
Sbjct: 141 ETLDDLLEKLKKKGKEGLVFKHPDAPYKGRPGS 173
|
ATP-dependent polynucleotide ligases catalyze the phosphodiester bond formation of nicked nucleic acid substrates using ATP as a cofactor in a three step reaction mechanism. This family includes ATP-dependent DNA and RNA ligases. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent DNA ligases have a highly modular architecture, consisting of a unique arrangement of two or more discrete domains, including a DNA-binding domain, an adenylation or nucleotidyltransferase (NTase) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many active site residues. Together with the C-terminal OB-fold domain, it comprises a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core contains six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases including eukaryotic GRP-dependent mRNA-capping enzymes. The catalytic core contains both the active site as well as many DNA-binding residues. The RNA circularization protein from archaea and bacteria contains the minimal catalytic unit, the adenylation domain, but does not contain an OB-fold domain. This family also includes the m3G-cap binding domain of snurportin, a nuclear import adaptor that binds m3G-capped spliceosomal U small nucleoproteins (snRNPs), but doesn't have enzymatic activity. Length = 182 |
| >gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEV 1040
+ E+K+DG R Q+ + G V ++SR + T FP+L++ +LD E+
Sbjct: 26 WQAEWKWDGIRGQLIR-RGGEVFLWSRGEELITGSFPELLAAAEAL----PDGTVLDGEL 80
Query: 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV------KVDICVFVFDIMFANGEQLL 1094
+ + + F +L R + K+V + +D++ NGE L
Sbjct: 81 LVWRDG---RPLPFNDLQQR--------LGRKTVGKKLLAEAPAAFRAYDLLELNGEDLR 129
Query: 1095 GYTLRQRRKYLKDLFY 1110
LR+RR L+ L
Sbjct: 130 ALPLRERRARLEALLA 145
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenylation domain binds ATP and contains many of the active site residues. Length = 207 |
| >gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 32/226 (14%)
Query: 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPD 1018
KPM +T +P + E KYDG R + + + + + SRNG E T+ FP+
Sbjct: 2 KPMQPTLTTSIPI------GDEWRYEVKYDGFRC-LLIIDETGITLISRNGRELTNTFPE 54
Query: 1019 LISIINEFCKPAAGTF------ILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
+I EFC+ LD E+V + N + F+ + R R VI
Sbjct: 55 II----EFCESNFEHLKEELPLTLDGELVCL--VNPYR-SDFEHVQQRGRLKNTEVIAKS 107
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDD--N 1130
+ + FD++ GE L +R+K L L K+
Sbjct: 108 ANARPCQLLAFDLLELKGESLTSLPYLERKKQLDKLMKAAKL-----PASPDPYAKARIQ 162
Query: 1131 CLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ S + ++ EGI+ K + + +KRS W
Sbjct: 163 YIPSTTDFDALWEAVKRYDG---EGIVAK--KKTSKWLENKRSKDW 203
|
Length = 610 |
| >gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-11
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 984 EYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAI 1043
E+K+DG R Q+ + G VR++SR + T RFP+L +LD E++
Sbjct: 230 EWKWDGIRVQLVR-RGGEVRLWSRGEELITERFPELAEAAEAL----PDGTVLDGELLVW 284
Query: 1044 DRKNGCKIMSFQELSSRERGGKDSVITIKSV------KVDICVFVFDIMFANGEQLLGYT 1097
++G + F +L R I K+V + +D++ GE L
Sbjct: 285 RPEDG-RPQPFADLQQR--------IGRKTVGKKLLADYPAFLRAYDLLEDGGEDLRALP 335
Query: 1098 LRQRRKYLKDLF 1109
L +RR L+ L
Sbjct: 336 LAERRARLEALI 347
|
Length = 539 |
| >gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 973 LKLFQNKAFTCEYKYDGQRAQIHKLVD---GTVRIFSRNG-DETTSRFPDLISIINEF-- 1026
K+ ++ E KYDG+ QIH + +RIFS++G D T R + SII +
Sbjct: 16 CKMIGSRRMWVETKYDGEYCQIHIDLSKDSSPIRIFSKSGKDSTADRAG-VHSIIRKALR 74
Query: 1027 -----CKPAAGTFILDAEVVA-IDRKNGCKIMSFQELSSR-ERGGKDSVITIKSVKVD-- 1077
CK + IL+ E+V DR+ KI F ++ ER G S +
Sbjct: 75 IGKPGCKFSKNC-ILEGEMVVWSDRQG--KIDPFHKIRKHVERSGSFIGTDNDSPPHEYE 131
Query: 1078 --ICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
+ VF FD++ + E LL +RR L+ L
Sbjct: 132 HLMIVF-FDVLLLDDESLLSKPYSERRDLLESL 163
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core unit contains six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. This model characterizes the adenylation domain of this group of uncharacterized fungal proteins. It is not known whether these proteins also contain an OB-fold domain. Length = 235 |
| >gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP 1017
++PMLA+ + +P+ + E K+DG R + VR+ SR+G T FP
Sbjct: 1 VEPMLARAVDALPE------PGGWQYEPKWDGFRCLAFRD-GDEVRLQSRSGKPLTRYFP 53
Query: 1018 DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-----ERGGKDSVITIK 1072
+L++ G +LD E+V + R + F L R R + + T
Sbjct: 54 ELVAAARA--LLPPG-CVLDGELV-VWRGGR---LDFDALQQRIHPAASRVRRLAEETPA 106
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
S FD++ G L G LR+RR L+ L + + +
Sbjct: 107 S------FVAFDLLALGGRDLRGRPLRERRAALEALLA-------GWGPPLHLSP----A 149
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
T+D + ++ +LEE + EG++ K L D Y P +R
Sbjct: 150 TTDRAEAR--EWLEEFEGAGLEGVVAKRL--DGPYRPGER 185
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. Length = 194 |
| >gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP 1017
I PML + + P F ++ + E K+DG R I +G +R+++R+ +E T++FP
Sbjct: 3 ISPMLLE-SAKEP-----FNSENYITEPKFDGIRL-IASKNNGLIRLYTRHNNEVTAKFP 55
Query: 1018 DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVD 1077
+L+++ +LD E++ + F+ + R + K + K V
Sbjct: 56 ELLNL------DIPDGTVLDGELIVLGSTGA---PDFEAVMERFQSKK----STKIHPVV 102
Query: 1078 ICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVS 1137
C VFD+++ NG L L +R++ L L + + + G
Sbjct: 103 FC--VFDVLYINGVSLTALPLSERKEILASLLLPH--PNVKIIEGIEGHGTA-------- 150
Query: 1138 LSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ E EGI++K ++ Y +KRSD+W
Sbjct: 151 ------YFELVEERELEGIVIKK--ANSPYEINKRSDNW 181
|
Length = 275 |
| >gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 980 AFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAE 1039
+ E+K+DG R Q+ + G R++SR GD+ + FPDL+ + +LD E
Sbjct: 222 DYAAEWKWDGIRVQLVR-RGGGRRLYSRTGDDISDSFPDLLEALPF-------GGVLDGE 273
Query: 1040 VVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFV--FDIMFANGEQLLGYT 1097
++ ++ F +L ++R + +V K + D F+ +D++ +GE L
Sbjct: 274 LLVWREG---EVAPFADL--QQRLNRKTV-GKKLLA-DYPAFLRAYDLLEWDGEDLRALP 326
Query: 1098 LRQRRKYLKDLF 1109
+RR L+ L
Sbjct: 327 FAERRARLEALV 338
|
This model describes a family of ATP-dependent DNA ligases present in about 12 % of prokaryotic genomes. It occurs as part of a four-gene system with an exonuclease, a helicase and a phosphoesterase, with all four genes clustered or at least the first two and last two paired. This family resembles DNA ligase I (see TIGR00574 and pfam01068), and its presumed function may be in DNA repair, replication, or recombination. Length = 526 |
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-09
Identities = 70/355 (19%), Positives = 122/355 (34%), Gaps = 74/355 (20%)
Query: 64 YFLSHFHSDHYTGLSPSWSKGI---IFCSEITSRLLS--------------------QIL 100
L+H H DH L G ++ + T+ LL + +
Sbjct: 53 VLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDV 112
Query: 101 NINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160
P I PLP PV + G +V A H G+ L +V G R ++TGD +
Sbjct: 113 ERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDG-----GRILYTGDVKRR 167
Query: 161 KTMLLQPVMNEFAGC-DAVFLDTTYCNPKFLFP--LQEESVEYVVNVVNRVGGELNE--- 214
K LL E C D + +++TY + ++ +E V + R G L
Sbjct: 168 KDRLLNGA--ELPPCIDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFA 225
Query: 215 -GLQKRVLFLVATY-VIGKEKILIEIFKKCGRKVCVDSRKM-------EVLRV----LGY 261
G + +L ++ G I ++ +V + K ++L+V +
Sbjct: 226 LGRAQELLLILRELGFAGDYPIYVD---GPIARVALAYAKYPIGLDLPDLLKVAESRFRF 282
Query: 262 GDSGVFTEDESETDV-HVVGWNEIMVERG----YDKVVGFVPTGW--------------- 301
+S + E VV M++ G Y K + W
Sbjct: 283 VESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRV 342
Query: 302 --TYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDI 354
+ + K + + +S H++ DEL E++K + P +V+ G
Sbjct: 343 LLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPE 397
|
Length = 427 |
| >gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 41/169 (24%)
Query: 47 TRFLIDAFRYAADF------------SVSY-FLSHFHSDHYTGL-------SPSWSKGII 86
TR LID D + LSH H+DH GL + +
Sbjct: 1 TRILIDPGPGTRDLRQQPLAAPALLPRIDAVLLSHAHADHILGLLTLRELIKRLPKRLPV 60
Query: 87 FCSEITSRLLSQILNINPKFIYPLPIKIPVL-------IDGCEVVLVGANHCPGA----V 135
+ + L + I+I + + G + H G
Sbjct: 61 YGPPGVAEDLRAPIFGVLPLFPVFDIEIFEIDIGEDVEVGGLTITAFPVQHGSGRYLLRE 120
Query: 136 QFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184
F + PG+ + ++GD + ++ E G D + LD T+
Sbjct: 121 GFRIETPGK-----KIYYSGDTGYIP-----DLLAEIKGADLLILDATF 159
|
This family is part of the beta-lactamase superfamily and is related to pfam00753. Length = 197 |
| >gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 43/222 (19%)
Query: 65 FLSHFHSDHYTG---LSPSWSKGIIFCSEITSRLLSQILNINPKF-----IYPLPIKIPV 116
FL+H H DH L I+ S +T+ L+ + L + F ++ + +
Sbjct: 71 FLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEI 130
Query: 117 LIDGCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRF---------CKTMLLQ 166
EV H P ++ + K P N V+TGDF+F L
Sbjct: 131 KFGSFEVEFFPVTHSIPDSLGIVIKTPEGN-----IVYTGDFKFDPTPVDGEPTDLARLA 185
Query: 167 PVMNEFAGCDAVFLDTTYC-NPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVA 225
+ E G A+ D+T NP F E V + ++ + RV +V
Sbjct: 186 EIGKE--GVLALISDSTNAENPG--FTPSESEVGENLE-------DIIRNAKGRV--IVT 232
Query: 226 TYV--IGKEKILIEIFKKCGRKVCVDSRKMEVL----RVLGY 261
T+ I + + +I+ +K GRKV V R ME L R LGY
Sbjct: 233 TFASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGY 274
|
Length = 555 |
| >gnl|CDD|236191 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 8e-05
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 19/154 (12%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDG-TVRIFSRNGDETTSR 1015
P++PMLAK + +P ++ E K+DG R + + DG V + SRNG T
Sbjct: 8 PVEPMLAKSVDAIP------PGDGWSYEPKWDGFRCLVFR--DGDEVELGSRNGKPLTRY 59
Query: 1016 FPDLISIINEFCKPAAGTFILDAE-VVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
FP+L++ + +LD E VVA D + F+ L R S + +
Sbjct: 60 FPELVAALRAE---LPERCVLDGEIVVARDGG-----LDFEALQQRIHPA-ASRVRKLAE 110
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
+ FD++ L G +RR L+
Sbjct: 111 ETPASFVAFDLLALGDRDLTGRPFAERRAALEAA 144
|
Length = 350 |
| >gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 45 PNTRFLIDAFRYAADFSVSY-FLSHFHSDHYTGLSPSWSK--GI-IFCSEITSRLL--SQ 98
L+ + + L+H H DH GL P + G ++ E T+ LL
Sbjct: 19 GEAEDLLAELKKLGPKKIDAIILTHGHPDHIGGL-PELLEAPGAPVYAPEGTAELLKDLL 77
Query: 99 ILNINPKFIYPLPIKIPVLIDGCEVVLVG---------ANHCPGAVQFLFKVPGRNGGFE 149
L L DG + + +G H PG++
Sbjct: 78 ALLGELGAEAEPAPPDRTLKDG-DELDLGGGELEVIHTPGHTPGSIVLYLPE-------G 129
Query: 150 RYVHTGDFRF 159
+ + TGD F
Sbjct: 130 KILFTGDLLF 139
|
Apart from the beta-lactamases a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor. Length = 177 |
| >gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV--- 208
V+TGDF+F KT LL+P N+F + + +++TY + P +EE+ + ++ V+N
Sbjct: 348 VYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKR 407
Query: 209 GGEL 212
GG++
Sbjct: 408 GGKV 411
|
Length = 637 |
| >gnl|CDD|203663 pfam07521, RMMBL, RNA-metabolising metallo-beta-lactamase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 4e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 319 EIHLVPYSEHSNYDELREYVKFLKPKRVIPT 349
+ + +S H++ +EL E +K LKP++VI
Sbjct: 8 RVETLHFSGHADQEELLELLKLLKPEKVILV 38
|
The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism. Length = 43 |
| >gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208
V+TGDF++ KT LL P +N+F + + +++TY P +EE+ + ++ VVN
Sbjct: 342 VYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNET 398
|
This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782. Length = 630 |
| >gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 65 FLSHFHSDHYTG---LSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGC 121
L+H H+DH G L + ++ E + LL L+ + + V ++G
Sbjct: 47 ILTHAHADHIGGLPELKEATGAPVVAAPEDAAALLRLGLDDAELRKLVDVLPVDVDLEGG 106
Query: 122 EVVLVG-------ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159
+ +L G + G + +PG + + TGD F
Sbjct: 107 DGILGGGLLLFVTPHPGHGPGHVVVYLPG-----GKVLFTGDLLF 146
|
Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1176 | |||
| KOG0967 | 714 | consensus ATP-dependent DNA ligase I [Replication, | 100.0 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 100.0 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 100.0 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 100.0 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 100.0 | |
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 100.0 | |
| cd07900 | 219 | Adenylation_DNA_ligase_I_Euk Adenylation domain of | 100.0 | |
| COG1793 | 444 | CDC9 ATP-dependent DNA ligase [DNA replication, re | 100.0 | |
| PHA02587 | 488 | 30 DNA ligase; Provisional | 100.0 | |
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 100.0 | |
| cd07901 | 207 | Adenylation_DNA_ligase_Arch_LigB Adenylation domai | 100.0 | |
| cd07903 | 225 | Adenylation_DNA_ligase_IV Adenylation domain of DN | 100.0 | |
| cd07897 | 207 | Adenylation_DNA_ligase_Bac1 Adenylation domain of | 100.0 | |
| cd07902 | 213 | Adenylation_DNA_ligase_III Adenylation domain of D | 100.0 | |
| cd08039 | 235 | Adenylation_DNA_ligase_Fungal Adenylation domain o | 100.0 | |
| cd07898 | 201 | Adenylation_DNA_ligase Adenylation domain of ATP-d | 100.0 | |
| cd07905 | 194 | Adenylation_DNA_ligase_LigC Adenylation domain of | 100.0 | |
| PF01068 | 202 | DNA_ligase_A_M: ATP dependent DNA ligase domain; I | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| cd07906 | 190 | Adenylation_DNA_ligase_LigD_LigC Adenylation domai | 100.0 | |
| PRK08224 | 350 | ligC ATP-dependent DNA ligase; Reviewed | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| PRK07636 | 275 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09633 | 610 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09632 | 764 | ATP-dependent DNA ligase; Reviewed | 100.0 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 100.0 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 100.0 | |
| TIGR02779 | 298 | NHEJ_ligase_lig DNA polymerase LigD, ligase domain | 100.0 | |
| PRK05972 | 860 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 99.98 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 99.97 | |
| cd07896 | 174 | Adenylation_kDNA_ligase_like Adenylation domain of | 99.96 | |
| PHA00454 | 315 | ATP-dependent DNA ligase | 99.96 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 99.96 | |
| cd06846 | 182 | Adenylation_DNA_ligase_like Adenylation domain of | 99.95 | |
| PRK09125 | 282 | DNA ligase; Provisional | 99.95 | |
| cd07895 | 215 | Adenylation_mRNA_capping Adenylation domain of GTP | 99.91 | |
| TIGR02776 | 552 | NHEJ_ligase_prk DNA ligase D. Members of this prot | 99.89 | |
| KOG4437 | 482 | consensus ATP-dependent DNA ligase III [Replicatio | 99.81 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.78 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.77 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.75 | |
| cd07894 | 342 | Adenylation_RNA_ligase Adenylation domain of RNA c | 99.71 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 99.68 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.67 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 99.65 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 99.63 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 99.6 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 99.58 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 99.53 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.53 | |
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 99.51 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 99.4 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.39 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 99.29 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 99.21 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 99.17 | |
| PF07522 | 110 | DRMBL: DNA repair metallo-beta-lactamase; InterPro | 99.1 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 99.04 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 98.96 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 98.9 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 98.86 | |
| COG1423 | 382 | ATP-dependent DNA ligase, homolog of eukaryotic li | 98.85 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 98.79 | |
| PF01331 | 192 | mRNA_cap_enzyme: mRNA capping enzyme, catalytic do | 98.74 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 98.73 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 98.67 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 98.64 | |
| TIGR01209 | 374 | RNA ligase, Pab1020 family. Members of this family | 98.63 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 98.59 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 98.55 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 98.49 | |
| PF07521 | 43 | RMMBL: RNA-metabolising metallo-beta-lactamase; In | 98.39 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 98.36 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 98.36 | |
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 98.24 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 98.17 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 98.11 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 98.11 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 97.93 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 97.86 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 97.84 | |
| COG5226 | 404 | CEG1 mRNA capping enzyme, guanylyltransferase (alp | 97.76 | |
| cd00114 | 307 | LIGANc NAD+ dependent DNA ligase adenylation domai | 97.68 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 97.67 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 97.62 | |
| PF01653 | 315 | DNA_ligase_aden: NAD-dependent DNA ligase adenylat | 97.62 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 97.6 | |
| PRK08097 | 562 | ligB NAD-dependent DNA ligase LigB; Reviewed | 97.51 | |
| smart00532 | 441 | LIGANc Ligase N family. | 97.5 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 97.4 | |
| cd09232 | 186 | Snurportin-1_C C-terminal m3G cap-binding domain o | 97.19 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 97.08 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 97.04 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 96.95 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.85 | |
| PF09414 | 186 | RNA_ligase: RNA ligase; InterPro: IPR021122 This e | 96.44 | |
| TIGR02307 | 325 | RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t | 96.07 | |
| PF14555 | 43 | UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A | 95.99 | |
| KOG0814 | 237 | consensus Glyoxylase [General function prediction | 95.89 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 95.73 | |
| PF14597 | 199 | Lactamase_B_5: Metallo-beta-lactamase superfamily; | 94.36 | |
| PHA02142 | 366 | putative RNA ligase | 94.31 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 93.95 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 93.6 | |
| COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary | 93.59 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 93.07 | |
| KOG3798 | 343 | consensus Predicted Zn-dependent hydrolase (beta-l | 92.41 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 90.34 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 87.96 | |
| KOG3132 | 325 | consensus m3G-cap-specific nuclear import receptor | 84.98 | |
| KOG2386 | 393 | consensus mRNA capping enzyme, guanylyltransferase | 83.2 | |
| cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is | 82.72 | |
| KOG4736 | 302 | consensus Uncharacterized conserved protein [Funct | 82.1 | |
| TIGR02306 | 341 | RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me | 81.86 |
| >KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-106 Score=922.90 Aligned_cols=502 Identities=45% Similarity=0.793 Sum_probs=472.7
Q ss_pred ccCccccCccccccchhhhhhhhhhhccccccccccccccccCcccccCCCCCCCcccccccCCCCCcchHHHHHHHHHH
Q 001045 646 SKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLV 725 (1176)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i 725 (1176)
++...+...|...|++.+. .+++......+......+|..|+|..+|||+.|+.+||++||++|+.|
T Consensus 45 ~~~~~~v~~~~~~~~~~s~-------------~~s~~~~~~~~~~~~~~~~~~y~~~~~a~wk~~~~~py~~~a~tF~kI 111 (714)
T KOG0967|consen 45 TDTFEVVKDSTLGSSDSSI-------------TLSSNADSKSDSGLLKKSPEDYLPSENACWKDGSKVPYLELARTFEKI 111 (714)
T ss_pred ccceeeccccccCcccccc-------------cccccccccccccccCCCccccchhhhhhccccCcCcHHHHHHHHHHH
Confidence 4556666777777766553 556666666666667788999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCChHHHHHHHHhcCCh
Q 001045 726 EAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDL 805 (1176)
Q Consensus 726 ~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~~~i~~~~~~~GDl 805 (1176)
++|++|++++++|+|||+.+++++|+|++|+|||++|+|+|+|++.|||||+++|+|||++++|.+.+.++..|++.|||
T Consensus 112 e~~s~Rl~i~~il~n~f~~v~~~sP~dLlp~vYLsiN~l~P~yeGlELGvGes~l~KAi~EatGrt~~~vk~~~~~~GDL 191 (714)
T KOG0967|consen 112 EETSGRLEIIDILSNFLRSVLATSPDDLLPTVYLSINKLAPDYEGLELGVGESLLMKAIAEATGRTLSHVKNQYNKLGDL 191 (714)
T ss_pred HhhccceeHHHHHHHHHHHHHhcCchhhhhHHHHhhhccCccccCccccccHHHHHHHHHHHhCccHHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhccccCcchhhH
Q 001045 806 GDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885 (1176)
Q Consensus 806 G~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tv 885 (1176)
|+||+.++.+|++|++|+||||.+||..|++||..+|++|+.+|..+++.||.+|++.|+|||+|.|.++||||++++||
T Consensus 192 G~VA~~sR~sQ~~m~~P~pLtV~~VF~~Lr~IAk~sG~~S~~kK~~lik~Llvac~~~E~kyLiRsL~gkLRiGlaeqTv 271 (714)
T KOG0967|consen 192 GLVAQGSRSSQRMMFKPKPLTVRDVFSTLRKIAKESGKGSQNKKKDLIKALLVACRGIEAKYLIRSLEGKLRIGLAEQTV 271 (714)
T ss_pred HHHHhhcccccccccCCCCccHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHhcccccHHHHHHHHHhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCccccCcCCCCCccCCCCcc
Q 001045 886 LPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKI 965 (1176)
Q Consensus 886 l~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~ 965 (1176)
|.||++|+.++......+..+...+++.++.....++++|+++|||+.+++.|+++|++.+...|.++||+|++||||+|
T Consensus 272 L~AL~~A~~~~~~~~~~~~~~~d~~kd~le~~~~ivk~afcq~P~ydiivp~lL~~Gie~L~e~c~l~PGIPlKPMLAkp 351 (714)
T KOG0967|consen 272 LAALGQAFVLNDNNDEEKSKKPDSLKDPLEEAAQIVKQAFCQLPDYDIIVPALLEHGIENLPETCKLTPGIPLKPMLAKP 351 (714)
T ss_pred HHHHHHHHhccCchhhhccCCcchhhhhhHHHHHHHHHHHhcCCchhhhHHHHHHhhhhhccccCccCCCCCCcchhcCc
Confidence 99999999988654334555667789999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEec
Q 001045 966 TNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDR 1045 (1176)
Q Consensus 966 ~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~ 1045 (1176)
++++.+++++|++..|+|||||||||+|||+..+|.|.|||||+++.|.+||||...+..+.++.+.+||||||+||||+
T Consensus 352 TK~i~evl~rf~~~~FTCEyKYDGeRAQIH~~edG~v~IfSRN~E~~T~kYPDi~~~~~~~~kp~v~sFIlD~EvVA~Dr 431 (714)
T KOG0967|consen 352 TKGIQEVLERFQDKAFTCEYKYDGERAQIHKLEDGTVEIFSRNSENNTGKYPDIIEVISKLKKPSVKSFILDCEVVAWDR 431 (714)
T ss_pred chhHHHHHHHhhCceeEEEeecCceeeeeEEccCCcEEEEecccccccccCccHHHHHHHhhCCccceeEEeeeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEE
Q 001045 1046 KNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTV 1125 (1176)
Q Consensus 1046 ~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v 1125 (1176)
+.| +++|||.|++|.|+. +...++++.||+|+|||||+||++|+++||++||++|.+.| .+.+|+|+++....
T Consensus 432 ~~~-~IlpFQvLSTRkRk~----v~v~dikV~Vcvf~FDily~ng~~Li~~pL~eRR~~l~e~f-~e~~g~f~fat~~~- 504 (714)
T KOG0967|consen 432 EKG-KILPFQVLSTRKRKN----VDVNDIKVKVCVFVFDILYLNGESLIQEPLRERRELLHESF-KEIPGEFQFATSLD- 504 (714)
T ss_pred cCC-ccCchhhhhhhhccc----cchhhceEEEEEEEEeeeeeCChhhhhhhHHHHHHHHHhhc-ccCCCceeEeeeec-
Confidence 986 999999999999884 44678899999999999999999999999999999999999 78899999999876
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1126 ~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+++.++|++||+++++.+|||+|||.+|.++.|+|.|||++|
T Consensus 505 ---------tn~~~eiq~Fl~~sv~~~cEGlMvKtLd~~atYep~kRs~~W 546 (714)
T KOG0967|consen 505 ---------TNDIDEIQEFLEESVQNSCEGLMVKTLDTNATYEPSKRSNNW 546 (714)
T ss_pred ---------cCCHHHHHHHHHHhhccCcceeEEEeeccccccCchhhccch
Confidence 368999999999999999999999999999999999999999
|
|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-90 Score=845.24 Aligned_cols=464 Identities=40% Similarity=0.749 Sum_probs=425.1
Q ss_pred cCCCCCCCcccccccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccc
Q 001045 693 SLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIE 772 (1176)
Q Consensus 693 ~~~~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~e 772 (1176)
...+..|+|..+++|..|.+|||.+||++|++|+.|++|++|+++|+|||+.++..+|+|+.+++||++|+|+|+|++.|
T Consensus 109 ~~~~~~~~~~~~~~w~~~~~~~f~~l~~~~~~Ie~tt~rlek~~~L~~~~r~~~~~~p~dl~~~vyL~~~~l~P~~e~~e 188 (744)
T PLN03113 109 KKKPNDFDPEKVAYWEKGERVPFLFVALAFDLISNETGRIVITDIVCNMLRTVMATTPEDLVAVVYLLANRIAPAHEGVE 188 (744)
T ss_pred cCCccccCcchhhcccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCCccccCcc
Confidence 34577899999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHH
Q 001045 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSL 852 (1176)
Q Consensus 773 lgige~~L~kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~i 852 (1176)
||||+++|+|+|++++|++.+.+++.|++.||||+||+.++++|.+++.+++|||.+||+.|.+||..+|++|+.+|..+
T Consensus 189 lgige~~L~kai~e~~g~~~~~ik~~y~~~GDlG~vA~~~~~~q~~~~~~~~LTi~~V~~~L~~IA~~~G~~sq~~K~~~ 268 (744)
T PLN03113 189 LGIGEATIIKALAEAFGRTEKQVKKQYKELGDLGLVAKASRSSQSMMRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNR 268 (744)
T ss_pred cCcCHHHHHHHHHHHHCcCHHHHHHHHHHhCCHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhhhCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999888887778999999999999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChH
Q 001045 853 IVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLD 932 (1176)
Q Consensus 853 l~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~ 932 (1176)
|..||..|++.|+|||+|+|+++||||++++||+.|||+||..+.... .........|++....++++|+.+|||+
T Consensus 269 i~~Ll~~~~~~E~k~liR~l~g~LRIGv~e~tVl~ALa~a~~~~~~~~----~~~~~~~~~l~~~~~~v~~a~~~~p~~~ 344 (744)
T PLN03113 269 IKALLVAATDCEPLYLIRLLQTKLRIGLAGQTLLAALGQAAVYNEEHS----TPPPNIQSPLEEAAKIVKQVYSVLPVYD 344 (744)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccccccccHHHHHHHHHHHhccccccc----ccccccchhhHHHHHHHHHHhccCCCHH
Confidence 999999999999999999999999999999999999999997654211 1112234456777788999999999999
Q ss_pred HHHHHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccC
Q 001045 933 LLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012 (1176)
Q Consensus 933 ~v~~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~ 1012 (1176)
.|++.|+..|+..+...|.++||+||+||||++++++++++++|++.+|+||+||||+|||||+..+|.|++||||++|+
T Consensus 345 ~i~~~ll~~g~~~l~~~~~i~~g~Pi~PMLA~~~~~~~eil~~~~g~~~~~E~KyDGeR~QiH~~~~g~v~lfSRn~ed~ 424 (744)
T PLN03113 345 KIVPALLSGGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHFLEDGSVEIYSRNAERN 424 (744)
T ss_pred HHHHHHHhCCcccccccccccCCCCCCCccCCCCCChHHHhhccCCCCEEEEEeeccceEEEEEecCCEEEEEeCCCCcc
Confidence 99999999998777788999999999999999999999999999999999999999999999985578999999999999
Q ss_pred CCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcc
Q 001045 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQ 1092 (1176)
Q Consensus 1013 T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~ 1092 (1176)
|.+|||++..+..++.+.+.+||||||+|+||+.++ +++|||.|++|.|+.. .....++|+||++|||||+||++
T Consensus 425 T~~fPel~~~~~~~~~~~~~~~ILDGEiVa~d~~~~-~~lpFq~Lq~R~rk~~----~~~~~~~pv~~~aFDlLylnG~~ 499 (744)
T PLN03113 425 TGKYPDVVVAISRLKKPSVKSFILDCELVAYDREKK-KILPFQILSTRARKNV----VMSDIKVDVCIFAFDMLYLNGQP 499 (744)
T ss_pred cccchhHHHHHHHhccccCCCEEEEeEEEEEECCCC-CcCCHHHHHhhhcccc----chhccccceEEEEEeccccCccC
Confidence 999999999998876566789999999999998764 8999999999977532 23345689999999999999999
Q ss_pred cccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCC
Q 001045 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172 (1176)
Q Consensus 1093 Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkR 1172 (1176)
|+++||.+||++|+++| .+.++++++++.... ++.++++++|+++++.|+||||+|+++.+|+|+||+|
T Consensus 500 L~~~PL~eRR~~L~~~~-~~~~~~i~~~~~~~~----------~~~ee~~~~~~~ai~~g~EGlmvK~l~~dS~Y~pGkR 568 (744)
T PLN03113 500 LIQEQLKIRREHLYESF-EEDPGFFQFATAITS----------NDLEEIQKFLDAAVDASCEGLIIKTLNKDATYEPSKR 568 (744)
T ss_pred hhcCCHHHHHHHHHHHh-ccCCCcEEEeeeecc----------CCHHHHHHHHHHHHHcCCceEEEeccCCCCCccCCCC
Confidence 99999999999999999 566788999988753 5789999999999999999999999866699999999
Q ss_pred CCCC
Q 001045 1173 SDSW 1176 (1176)
Q Consensus 1173 s~~W 1176 (1176)
+.+|
T Consensus 569 s~~W 572 (744)
T PLN03113 569 SNNW 572 (744)
T ss_pred CCCe
Confidence 9999
|
|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=733.38 Aligned_cols=421 Identities=31% Similarity=0.514 Sum_probs=380.8
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCCh
Q 001045 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNR 792 (1176)
Q Consensus 713 ~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~ 792 (1176)
|||..||.+|++|++|++|++|+++|+|||+.+ +|+++.+++||++|+++|+|++++||||+++|.++|++++|++.
T Consensus 1 m~f~~l~~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~l~~~~~~p~~~~~~~gi~~~~l~k~i~~~~g~~~ 77 (590)
T PRK01109 1 MEFSELAEYFERLEKTTSRTQLTKLLADLLKKT---PPEIIDKVVYLIQGKLWPDWLGLELGVGEKLLIKAISMATGISE 77 (590)
T ss_pred CcHHHHHHHHHHHHhhhchHHHHHHHHHHHHhC---CHHhhhhhHHHHhCCcCccccCcccCcCHHHHHHHHHHHHCcCH
Confidence 689999999999999999999999999999996 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcc--c---cCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHH
Q 001045 793 SKIRDMYNRLGDLGDVAQECRQTQA--L---LAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867 (1176)
Q Consensus 793 ~~i~~~~~~~GDlG~va~~~~~~q~--~---l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~ 867 (1176)
+.++++|++.||+|++|+.+++.+. + +..+++||+.+|++.|++||+.+|.+|+..|..+|..||.+|++.|++|
T Consensus 78 ~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~~~~~~~lti~eV~~~L~~Ia~~sg~~s~~~k~~iL~~Ll~~~~~~E~k~ 157 (590)
T PRK01109 78 KEVENLYKKTGDLGEVARRLKSKKKQKSLLAFFSKEPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKY 157 (590)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcccccccccCCCCCcCHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999987543 2 2457889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCc
Q 001045 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947 (1176)
Q Consensus 868 LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~ 947 (1176)
|+|+|+++||||+++++|+.|||+||+... .++.++++|+.+||++.|+..+..+|++. .
T Consensus 158 iirli~g~lriGv~e~~il~ALa~A~~~~~-------------------~~~~ve~~y~~~~Dlg~va~~l~~~g~~~-~ 217 (590)
T PRK01109 158 IARFVEGRLRLGVGDATILDALAIAFGGAV-------------------ARELVERAYNLRADLGYIAKILAEGGIEA-L 217 (590)
T ss_pred HHHHHhhhhhcCccHHHHHHHHHHHHhccc-------------------chHHHHHHHHhCCCHHHHHHHHHhcchhh-h
Confidence 999999999999999999999999986211 24789999999999999999999888743 3
Q ss_pred cccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhc
Q 001045 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027 (1176)
Q Consensus 948 ~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~ 1027 (1176)
..+.++||+|++||||+++++++++++++++ .|++|+||||+|||+|++ ++.|++||||++|+|..||+|++.+...+
T Consensus 218 ~~~~i~~~~Pv~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~-~~~v~l~SR~~~d~T~~~pel~~~~~~~~ 295 (590)
T PRK01109 218 KKVKPQVGIPIRPMLAERLSSPKEILKKMGG-EALVEYKYDGERAQIHKK-GDKVKIFSRRLENITHQYPDVVEYAKEAI 295 (590)
T ss_pred ccCcccCCCCCCcccCCccCCHHHHHHHcCC-CeEEEecCCceEEEEEEc-CCEEEEEeCCchhhccccchHHHHHHHhc
Confidence 6799999999999999999999999999864 689999999999999994 89999999999999999999999988754
Q ss_pred CCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHH
Q 001045 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKD 1107 (1176)
Q Consensus 1028 ~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~ 1107 (1176)
...+||||||||+||+++| +++|||.|++|.|+. .+......+|+||++|||||+||++|+++||.+||++|++
T Consensus 296 --~~~~~ILDGElv~~d~~~g-~~~~F~~l~~R~r~~---~~~~~~~~~p~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~ 369 (590)
T PRK01109 296 --KAEEAIVEGEIVAVDPETG-EMRPFQELMHRKRKY---DIEEAIKEYPVNVFLFDLLYVDGEDLTDKPLPERRKKLEE 369 (590)
T ss_pred --CccceEEeeeEEEEECCCC-cccChHHHhhccccc---chhhhcccCceEEEEEEEEEECCcchhhCcHHHHHHHHHH
Confidence 3579999999999997665 789999999994432 1222335678999999999999999999999999999999
Q ss_pred hhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1108 LFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1108 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
++ .+. +.+.++++..+ ++.++++++|++++++|+||||+|+++.+|+|+||+|+.+|
T Consensus 370 ~~-~~~-~~~~~~~~~~~----------~~~~~~~~~~~~a~~~g~EGiv~K~~~~ds~Y~~g~Rs~~W 426 (590)
T PRK01109 370 IV-KEN-DKVKLAERIIT----------DDVEELEKFFHRAIEEGCEGLMAKSLGKDSIYQAGARGWLW 426 (590)
T ss_pred hc-CCC-CceEEeeeEec----------CCHHHHHHHHHHHHHcCCceEEEecCCCCCCcCCCCCCccH
Confidence 99 443 45888887753 57899999999999999999999999434999999999999
|
|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=640.19 Aligned_cols=396 Identities=20% Similarity=0.262 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCChHHH
Q 001045 716 IHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795 (1176)
Q Consensus 716 ~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~~~i 795 (1176)
..||++|++|++|++|++|+++|++||+++ +|+|+.+++||++|.+++ +||++++|.+++++++|++++.+
T Consensus 2 ~~fa~~~~~i~~t~~~~ek~~~l~~~~~~~---~~~d~~~~~~ll~g~~~~------~~i~~~~l~k~~~~~~g~~~~~~ 72 (539)
T PRK09247 2 KAFAELLDRLDLTTSTNAKLALLADYFRSA---PDPDRAWALALLTGGLPR------RLVKTRLLRELAAERADLPPWLF 72 (539)
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCccc------CCCCHHHHHHHHHHHHCcCHHHH
Confidence 579999999999999999999999999997 788999999999999984 79999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhhccc--cCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHh
Q 001045 796 RDMYNRLGDLGDVAQECRQTQAL--LAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLV 873 (1176)
Q Consensus 796 ~~~~~~~GDlG~va~~~~~~q~~--l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIl 873 (1176)
++.|++.||+|++|+.+++.+.. .+.+.++||.+|+..|.+|+.. .|...|.+||.+|++.|++||+|+|+
T Consensus 73 ~~~~~~~GDlg~~~~~~~~~~~~~~~~~~~~~tv~~v~~~l~~~~~~-------~k~~~l~~ll~~~~~~e~~~i~rli~ 145 (539)
T PRK09247 73 EESYDYVGDLAETIALLLPAPSDEASDLPLAPWLEEVLLPLRGLGRE-------ELRAALADLWDRLDEDGRFALNKLIT 145 (539)
T ss_pred HHHHHhcCCHHHHHHHhcccccccccCCCccccHHHHHHHHHhhhHH-------HHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 99999999999999999654322 2234679999999999999753 36788999999999999999999999
Q ss_pred hccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHhccccCCCccccC
Q 001045 874 RNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNI--LPSLDLLIPSLMNKGIGFSASTLS 951 (1176)
Q Consensus 874 k~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~--~pdl~~v~~~L~~~g~~~~~~~~~ 951 (1176)
++||||+++++|+.|||+||..+. +.+.++|+. .|+++.+...+.. |. ..+.
T Consensus 146 g~lRiG~~~~~v~~ala~a~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~-~~----~~~~ 199 (539)
T PRK09247 146 GGFRVGVSARLVTRALAELGGVDE---------------------ARIAQRLMGLWPPYADLFAWLIGP-EE----DPLP 199 (539)
T ss_pred CccccchhHHHHHHHHHHHhCCCH---------------------HHHHHHHhCCCCCcHHHHHHHhhC-Cc----cccC
Confidence 999999999999999999996542 577888988 7888887755543 44 5788
Q ss_pred cCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCC
Q 001045 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 952 l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
++||+|++||||+++++..+. .+...+|++|+||||+|||+|+ .++.|++|||||+++|..||++.+.+... +
T Consensus 200 ~~~~~P~~pMLA~~~~~~~~~--~~~~~~~~~E~K~DG~R~qih~-~~~~v~lfSR~g~d~t~~fPei~~~~~~l----~ 272 (539)
T PRK09247 200 ADPGQPYPFFLAHPLEDEDLT--LGDPADWQAEWKWDGIRVQLVR-RGGEVRLWSRGEELITERFPELAEAAEAL----P 272 (539)
T ss_pred CCCCCcCCCeeCCcCCCchhh--hcCCCcEEEEEeEcceEEEEEE-eCCEEEEEeCCCccchhhhHHHHHHHHhC----C
Confidence 999999999999999887653 3344689999999999999999 58899999999999999999999987652 3
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
.+||||||+|+||++++ .++|||.|++|.+++... .......|+||++|||||+||++|+++||.+||++|++++ .
T Consensus 273 ~~~ILDGElv~~~~~~~-~~~~F~~l~~R~~rk~~~--~~~~~~~pv~~~vFDiL~l~g~~l~~~Pl~eRr~~L~~~~-~ 348 (539)
T PRK09247 273 DGTVLDGELLVWRPEDG-RPQPFADLQQRIGRKTVG--KKLLADYPAFLRAYDLLEDGGEDLRALPLAERRARLEALI-A 348 (539)
T ss_pred CCEEEEeEEEEEECCCC-CcCCHHHHHHHhcccccc--hhhhhcCCeEEEEEEeeeeCCcchhhCCHHHHHHHHHHHh-c
Confidence 68999999999997664 789999999995432221 1122357899999999999999999999999999999999 4
Q ss_pred cC-CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1112 EK-MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1112 ~~-~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+. ++++.+++...+ .+.++++++|++++++|+||||+|+++ |+|+||+|+..|
T Consensus 349 ~~~~~~i~~~~~~~~----------~~~~e~~~~~~~a~~~g~EGlm~K~~~--s~Y~~Grr~~~W 402 (539)
T PRK09247 349 RLPDPRLDLSPLVPF----------SDWDELAALRAAARERGVEGLMLKRRD--SPYLVGRKKGPW 402 (539)
T ss_pred ccCCCeEEecCceec----------CCHHHHHHHHHHHHHCCCceEEEecCC--CCcCCCCCcchh
Confidence 43 458888887763 578999999999999999999999998 999999999988
|
|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-68 Score=638.26 Aligned_cols=376 Identities=27% Similarity=0.433 Sum_probs=332.0
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCCh
Q 001045 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNR 792 (1176)
Q Consensus 713 ~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~ 792 (1176)
|+|..||++|++|+.|++|++|+++|++||+.+ +|+|+.+++||++|+++ ++++|++++.+.++++.
T Consensus 1 m~f~~~~~~~~~l~~tt~r~~k~~~l~~~~~~~---~~~d~~~~~~~~~g~~~----~~~l~~~~~~v~~~~~~------ 67 (508)
T PRK03180 1 MLLADVAATSAAVAATSSRLAKVARLAELLRRA---DPAEVAIVVAWLSGELR----QRRIGVGWATLRSLPAP------ 67 (508)
T ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCCC----CCccCccHHHHHhcccc------
Confidence 689999999999999999999999999999997 78999999999999997 46899998777776432
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHH
Q 001045 793 SKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTL 872 (1176)
Q Consensus 793 ~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiI 872 (1176)
..+++|||.+||+.|++||..+|.+|+..|..+|..||.+|++.|+|||+|+|
T Consensus 68 ---------------------------~~~~~ltl~~V~~~l~~ia~~~g~~s~~~k~~~l~~ll~~~~~~E~~~l~r~i 120 (508)
T PRK03180 68 ---------------------------AAEPTLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAATEDEQRFLRRLL 120 (508)
T ss_pred ---------------------------cCCCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11367999999999999999999999999999999999999999999999999
Q ss_pred hhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCccccCc
Q 001045 873 VRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952 (1176)
Q Consensus 873 lk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~~~~~l 952 (1176)
+++||||+++++|+.|||+||..+. ++++++|+.|+|++.+++.++..|... ...|.+
T Consensus 121 ~~~lRiGv~~~~v~~Ala~a~~~~~---------------------~~v~~a~~~~~dl~~v~~~~l~~~~~~-~~~~~i 178 (508)
T PRK03180 121 TGELRQGALDGVMADAVARAAGVPA---------------------AAVRRAAMLAGDLPAVAAAALTGGAAA-LARFRL 178 (508)
T ss_pred hCCCcccccHHHHHHHHHHHhCCCH---------------------HHHHHHHHHcCCHHHHHHHHHhcCccc-cccCCC
Confidence 9999999999999999999996543 689999999999999999988877643 478999
Q ss_pred CCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCC
Q 001045 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG 1032 (1176)
Q Consensus 953 ~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~ 1032 (1176)
+||+|++||||++++++++++++++ .+|++|+||||+|||+|+ .+++|++||||++++|..||++.+.+... ..+
T Consensus 179 ~~~~P~~PMLA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~-~~~~v~l~SR~~~d~T~~fPei~~~~~~~---~~~ 253 (508)
T PRK03180 179 EVGRPVRPMLAQTATSVAEALARLG-GPAAVEAKLDGARVQVHR-DGDDVRVYTRTLDDITARLPEVVEAVRAL---PVR 253 (508)
T ss_pred CCCCCCCCccCCcCCChHHHHHHhC-CCeEEEEEEceeEEEEEE-ECCEEEEEeCCCCcchhhhHHHHHHHHhC---CCc
Confidence 9999999999999999988888885 589999999999999999 58899999999999999999999887763 357
Q ss_pred CeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc
Q 001045 1033 TFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE 1112 (1176)
Q Consensus 1033 ~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~ 1112 (1176)
+||||||||+||+ +| +++|||.+++|.++... +......+|++|++|||||+||++|+++||.+||++|++++ .+
T Consensus 254 ~~ILDGElv~~d~-~g-~~~~F~~l~~R~~~k~~--~~~~~~~~pv~~~~FDlL~l~G~dl~~~pl~eRr~~L~~~~-~~ 328 (508)
T PRK03180 254 SLVLDGEAIALRP-DG-RPRPFQVTASRFGRRVD--VAAARATQPLSPFFFDALHLDGRDLLDAPLSERLAALDALV-PA 328 (508)
T ss_pred ceeecceEEEECC-CC-CcCCHHHHHHHhccccc--hhhhcccCceEEEEEeehhcCCcchhcCCHHHHHHHHHHhh-cc
Confidence 9999999999997 34 78999999999654322 22233468999999999999999999999999999999999 32
Q ss_pred CCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1113 KMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1113 ~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
. ..++... ..+.++++++|++++++|+||||+|+++ |+|+||+|+.+|
T Consensus 329 ~----~~~~~~~----------~~~~~~~~~~~~~a~~~g~EGlm~K~~d--s~Y~~GrR~~~W 376 (508)
T PRK03180 329 A----HRVPRLV----------TADPAAAAAFLAAALAAGHEGVMVKSLD--APYAAGRRGAGW 376 (508)
T ss_pred c----cccccee----------cCCHHHHHHHHHHHHHcCCceEEEeCCC--CCcCCCCCCCCc
Confidence 1 1122222 3568999999999999999999999998 999999999998
|
|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=622.11 Aligned_cols=364 Identities=35% Similarity=0.571 Sum_probs=330.7
Q ss_pred ccccchhhHHHHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhcc-ccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHH
Q 001045 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA-LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKK 850 (1176)
Q Consensus 772 elgige~~L~kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~-~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~ 850 (1176)
+||||+++|.|++++++|++.+.+++.|.+.||+|++++.+++.+. ....+.+|||.+|++.|++||+.+|.+|+.+|.
T Consensus 1 ~~gi~~~~l~k~~~~~~~~~~~~~~~~~~~~gd~g~~~~~~~~~~~~~~~~~~~lti~eV~~~L~~ia~~~g~~s~~~k~ 80 (514)
T TIGR00574 1 EYGIGEKLLIKAISKALGIPKDEIEEKVKEDGDLGEVIEGLFSKQKQTSFFSAPLTVKEVYETLKNIAETSGEGSQDKKI 80 (514)
T ss_pred CCCCcHHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHhccccccccCCCCcCHHHHHHHHHHHHHhhCCCcHHHHH
Confidence 6999999999999999999999999999999999999999987655 445678999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 001045 851 SLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPS 930 (1176)
Q Consensus 851 ~il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pd 930 (1176)
.+|..||++|++.|+|||+|+|+++||||+++++|+.||+.++..+ |+++.++|+.|||
T Consensus 81 ~~l~~ll~~~~~~e~k~l~r~i~~~lriG~~~~~il~al~~~~~~~---------------------~~~~~~~~~~~~d 139 (514)
T TIGR00574 81 KLLKSLLKRASPLEAKYLIRTILGDLRIGIAEKTILDALAKAFLLS---------------------HPDVERAFNLTND 139 (514)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhcccCccHHHHHHHHHHHhccc---------------------hHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999988643 4789999999999
Q ss_pred hHHHHHHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCc
Q 001045 931 LDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD 1010 (1176)
Q Consensus 931 l~~v~~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~ 1010 (1176)
++.||+.|.++|.+.....+.++||+|++||||+++++++++++++++ +|++|+||||+|||+|+ .+++|++|||||+
T Consensus 140 l~~v~~~l~~~~~~~~~~~~~i~~~~p~~PMLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~-~~~~v~l~SR~g~ 217 (514)
T TIGR00574 140 LGKVAKILLEPGLRGLDKDLSIQLGIPFKPMLAERAKSIEEALKKKGN-KFYVEYKYDGERVQIHK-DGDKFKIFSRRLE 217 (514)
T ss_pred HHHHHHHHHhcChhhhcccceeecCCcCccccCCccCCHHHHHHHhCC-ceEEEEeecceEEEEEE-cCCEEEEEcCCCc
Confidence 999999999988866656789999999999999999999988888764 89999999999999999 5889999999999
Q ss_pred cCCCCchhH-HHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC
Q 001045 1011 ETTSRFPDL-ISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN 1089 (1176)
Q Consensus 1011 d~T~~ypdl-~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln 1089 (1176)
++|..||++ .+.+...+. ...+||||||||+||.++| +++||+.|++|.++ . ++.......++||++|||||+|
T Consensus 218 ~~t~~~pei~~~~~~~~~~-~~~~~ILDGElv~~d~~~g-~~~~F~~l~~r~~~-~--~~~~~~~~~~~~~~vFDiL~l~ 292 (514)
T TIGR00574 218 NYTYAYPEIFTEFIKEAFP-GIKSCILDGEMVAIDPETG-KILPFQTLLRRKRR-Y--DIDSMEKKVPVCLFVFDILYLN 292 (514)
T ss_pred ccccccchhHHHHHHHhcC-ccceeeecceEEEEEcCCC-CCcCcHhHHhhhhh-c--cccccccccceEEEEEEEEEEC
Confidence 999999999 887877653 3578999999999998775 78999999999764 1 1222334678999999999999
Q ss_pred CcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCccc
Q 001045 1090 GEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSP 1169 (1176)
Q Consensus 1090 G~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~p 1169 (1176)
|++++++||.+||++|++++ .+.++.+.+++.+.+ ++.+++.++|++++++|+||||+|+++ |+|+|
T Consensus 293 g~~l~~~pl~eRr~~L~~~~-~~~~~~i~~~~~~~~----------~~~e~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~ 359 (514)
T TIGR00574 293 GESLIDEPLIERREILESIL-KPIPNRIEIAEMKIT----------SNVEELEKFLNEAISEGCEGLMLKDLK--SIYEP 359 (514)
T ss_pred CcchhcCcHHHHHHHHHHhc-cCCCCcEEEEEEEec----------CCHHHHHHHHHHHHHcCCceEEEecCC--CcccC
Confidence 99999999999999999999 666788999998764 478999999999999999999999998 99999
Q ss_pred CCCCCCC
Q 001045 1170 SKRSDSW 1176 (1176)
Q Consensus 1170 GkRs~~W 1176 (1176)
|+|+.+|
T Consensus 360 G~Rs~~W 366 (514)
T TIGR00574 360 GKRGWLW 366 (514)
T ss_pred CCCCCcc
Confidence 9999999
|
All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=567.88 Aligned_cols=413 Identities=24% Similarity=0.387 Sum_probs=359.7
Q ss_pred CCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccc--ccccchhhHHHHHHHHh
Q 001045 711 QPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI--ELNIGGSLVTSAIEEAC 788 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~--elgige~~L~kal~~~~ 788 (1176)
.|+-|+.+|++|+.|+.|...+.|++.+..++.+. ..|-+.++.+|.+++++.|.+|+. .|||++..|++.+++++
T Consensus 3 ~~~~F~~~~~~f~~i~~t~~~~~k~~~~~k~~~s~--~~~~e~~sd~y~~lRL~lp~lDReR~~Yglket~La~l~i~~l 80 (881)
T KOG0966|consen 3 SPQNFSEVVDFFNKIRRTSNVKSKQAKFRKNFESW--CRPCEVGSDMYVALRLILPDLDRERGSYGLKETVLARLYIRAL 80 (881)
T ss_pred CccccchHHHHHHHHHHhhhhHhHHHHHhhccccc--cccccCCcchhhhhhhcccchhhcccccCchHHHHHHHHHHHh
Confidence 47889999999999999999999999999999886 356677888899999999999974 99999999999999999
Q ss_pred CCChHHH---H-HHHH----hcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhc
Q 001045 789 GTNRSKI---R-DMYN----RLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSC 860 (1176)
Q Consensus 789 g~~~~~i---~-~~~~----~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~ 860 (1176)
+++++.- + ..|+ ..||++.+++.+.+.+.....++.|||++||+.||.||..... ..++...|..|.++|
T Consensus 81 ~lprds~Da~rL~nwr~~~~~~Gdfs~i~~~vl~~R~~~~~s~alTi~evN~lLD~LA~~~~~--~~~~~~~l~~lv~~~ 158 (881)
T KOG0966|consen 81 HLPRDSADAVRLKNWRASTGARGDFSLILYEVLQRRCENPSSGALTIKEVNDLLDSLASGPSE--DGKKFKKLSQLVEQC 158 (881)
T ss_pred cCCCCcHHHHHHHhhccCCCcCccHHHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHcCCchh--hhhhhHHHHHHHHhC
Confidence 9987432 2 1254 2489999999998876554444559999999999999964432 223337899999999
Q ss_pred chhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 861 REKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 861 ~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
++.|+|||+|+|+|++.+|+++++|+.. |||+|.+.|++|.||+.||+.|.+
T Consensus 159 S~~ElkWliriiLK~lklG~se~~Il~v----------------------------fHPdA~dl~~vtsDLk~Vc~~L~D 210 (881)
T KOG0966|consen 159 SPLELKWLIRIILKNLKLGASEKKILSV----------------------------FHPDAQDLYNVTSDLKAVCKKLYD 210 (881)
T ss_pred CHHHHHHHHHHHHHhhhcCCccchhhhh----------------------------cCccHHHHHHHhhhHHHHHHHhcC
Confidence 9999999999999999999999999875 679999999999999999999999
Q ss_pred cccCCCccccCcCCCCCccCCCCcccCChh-HHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchh-
Q 001045 941 KGIGFSASTLSMVPGVPIKPMLAKITNGVP-QVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPD- 1018 (1176)
Q Consensus 941 ~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~-~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypd- 1018 (1176)
+..........+.+|..++||||+..+... +++++|++++|++|+|+||||+|+|+ .+|.+++|||||.|+|..|..
T Consensus 211 p~~~l~~~~~~i~lfsa~~PqLa~~~~~~~~~~~e~m~~~~f~lEtK~DGERiQlHk-~g~~~~yfSRNg~dyT~~yg~s 289 (881)
T KOG0966|consen 211 PSVGLKELDEDIELFSAFRPQLAQKQKLGDWAIIEKMGGQDFYLETKFDGERIQLHK-DGGEYKYFSRNGNDYTYEYGAS 289 (881)
T ss_pred CccCccccccceeehhhcCHHHHhhhccchHHHHHHhcCCceEEEeeccCceEEEEe-cCCEEEEEecCCcchhhhcCcc
Confidence 887655555569999999999999887655 78899999999999999999999999 599999999999999987743
Q ss_pred -----HHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCccc
Q 001045 1019 -----LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQL 1093 (1176)
Q Consensus 1019 -----l~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~L 1093 (1176)
+...|+.+|...+.+||||||||+||+.+ .+++||+..+...+.... ....++||++|||||+||++|
T Consensus 290 ~~~g~lt~~i~~~f~~~v~~cILDGEMm~wD~~~-~~f~~~G~~~dik~~~~~------~~~~qp~yvvfDLLylNgksL 362 (881)
T KOG0966|consen 290 YAHGTLTQRIHGAFNKEVESCILDGEMMTWDTKT-KRFCPFGSNSDIKELSSR------DGSQQPCYVVFDLLYLNGKSL 362 (881)
T ss_pred cccccccHHHHhhhhhcchheEecceEEEeecch-hhhccCCchhhHHHhhcc------ccCCCceEEEeeeeeecCccc
Confidence 67788888877899999999999999998 599999998865443221 234579999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCC
Q 001045 1094 LGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRS 1173 (1176)
Q Consensus 1094 l~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs 1173 (1176)
.+.||.+|++.|++++ .+.+++++++++..+ .+.++|+++|++|++.|.||||+|.++ |.|.||.|+
T Consensus 363 ~~~~l~qR~e~L~~v~-~p~~~~iei~~~~~~----------~~~edi~~~f~~ai~~~~EGIVlK~~~--S~Y~pg~R~ 429 (881)
T KOG0966|consen 363 FGAPLHQRLEILKKVI-VPKSGRIEIVRSEVG----------STKEDIEQFFEEAIDNGEEGIVLKKPD--SSYVPGQRS 429 (881)
T ss_pred CCccHHHHHHHHHhcc-cCCCCeeEEeehhhc----------ccHHHHHHHHHHHHhcCCCceEEeccC--cccCccccC
Confidence 9999999999999999 788899999988764 578999999999999999999999998 999999999
Q ss_pred CCC
Q 001045 1174 DSW 1176 (1176)
Q Consensus 1174 ~~W 1176 (1176)
++|
T Consensus 430 ~gW 432 (881)
T KOG0966|consen 430 NGW 432 (881)
T ss_pred CCc
Confidence 999
|
|
| >cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=399.03 Aligned_cols=211 Identities=52% Similarity=0.934 Sum_probs=189.4
Q ss_pred cCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCC
Q 001045 950 LSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKP 1029 (1176)
Q Consensus 950 ~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~ 1029 (1176)
+.++||+|++||||+++.+++++++.+++.+|++|+||||+|||+|+..+|.|++|||||+++|..||+|++.+...+.+
T Consensus 2 ~~~~~~~pi~PMLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~~~h~~~~~~v~l~SR~g~~~t~~~pel~~~~~~~~~~ 81 (219)
T cd07900 2 CKLTPGIPVKPMLAKPTKGVSEVLDRFEDKEFTCEYKYDGERAQIHLLEDGKVKIFSRNLENNTEKYPDIVAVLPKSLKP 81 (219)
T ss_pred ceeecCCccccccCCccCCHHHHHHHhCCCeEEEEEeecceEEEEEEcCCCeEEEECCCCccccchhhHHHHHHHHHhcc
Confidence 57899999999999999999999999998899999999999999999645899999999999999999999999988766
Q ss_pred CCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhh
Q 001045 1030 AAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLF 1109 (1176)
Q Consensus 1030 ~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~ 1109 (1176)
.+.+||||||||+||..+| .+.||+.|++|.++.... .....+++|++|||||+||++|+++||.+||++|++++
T Consensus 82 ~~~~~iLDGElv~~~~~~g-~~~~F~~l~~r~~~~~~~----~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~ 156 (219)
T cd07900 82 SVKSFILDSEIVAYDRETG-KILPFQVLSTRKRKDVDA----NDIKVQVCVFAFDLLYLNGESLLKKPLRERRELLHSLF 156 (219)
T ss_pred cCccEEEeeEEEEEEcCCC-CCcChHHHhhhccccccc----ccCcccEEEEEEEEEEECCchhhcCCHHHHHHHHHHhc
Confidence 6789999999999998765 688999999997654321 23467899999999999999999999999999999999
Q ss_pred cccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1110 YDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1110 ~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+.++++.++++..+ ++.++++++|++++++|+||||+|+++++|+|.||+||.+|
T Consensus 157 -~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGiv~K~~~~~s~Y~~g~Rs~~W 212 (219)
T cd07900 157 -KEVPGRFQFATSKDS----------EDTEEIQEFLEEAVKNNCEGLMVKTLDSDATYEPSKRSHNW 212 (219)
T ss_pred -CCCCCeEEEEEEEec----------CCHHHHHHHHHHHHHcCCceEEEecCCCCCccCCCCcCCCc
Confidence 566788999988764 57899999999999999999999998755899999999998
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo |
| >COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=416.67 Aligned_cols=307 Identities=33% Similarity=0.520 Sum_probs=261.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcc
Q 001045 782 SAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCR 861 (1176)
Q Consensus 782 kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~ 861 (1176)
+++....| ...+.+.|...||+|.++..++. +.+|+..|.+++...| +. .++..|+..++
T Consensus 2 ~av~~~~~--~~~~~~~~~~~Gdlg~~~~~~~~------------v~~v~~~~~~~~~~~g---~~---~~~~~L~~~~~ 61 (444)
T COG1793 2 KAVSEEDG--EYEIFEGYIPQGDLGEGAVLLWD------------VEGVYLTLSKVAERTG---QE---RLLWLLLDEAD 61 (444)
T ss_pred cchhhhcc--chhhhhcccccCccchhheeeee------------cccchhhHHHHHhhcC---ch---hHHHHHHHhcc
Confidence 35556666 56677889999999999988775 8999999999999988 22 78888888888
Q ss_pred hhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhcc
Q 001045 862 EKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNK 941 (1176)
Q Consensus 862 ~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~ 941 (1176)
+|+++++++.||+.| ++++|+.+||+..++..++..
T Consensus 62 ----------------~gv~~~~~~~ala~~----------------------------~~~~~~~~~d~g~~a~~~~~~ 97 (444)
T COG1793 62 ----------------IGVSEGTVLDALAEA----------------------------VERAYLWHNDLGALAKILLTL 97 (444)
T ss_pred ----------------cchhhHHHHHHHHHH----------------------------hhhhhccCCCchhhhhhhhhc
Confidence 999999999999853 578999999999999998887
Q ss_pred ccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHH
Q 001045 942 GIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLIS 1021 (1176)
Q Consensus 942 g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~ 1021 (1176)
+.... ..+.+.+|.|++|||+.....+.+...+..+ .|++|+||||+|+|+|+ .++.|++|||||+|+|.+||++..
T Consensus 98 ~~~~~-~~~~~~~~~p~~~~la~~~~~~~~~~~~~~~-~w~~E~K~DG~R~q~h~-~~~~vrl~SR~g~d~T~~fP~~~~ 174 (444)
T COG1793 98 GAEAL-DKATLLPGRPLPPMLAPMLASLEEALPRDGG-DWAYEEKFDGYRVQIHI-DGGKVRLYSRNGEDWTGRFPDILE 174 (444)
T ss_pred ccccc-cccccccCCccchhhccccccccccCCCCCC-CEEEEEeeceEEEEEEE-cCCEEEEEeCCCccchhhChHHHH
Confidence 76544 6677899999999999998887776666543 49999999999999999 588999999999999999998766
Q ss_pred HHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHH
Q 001045 1022 IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQR 1101 (1176)
Q Consensus 1022 ~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eR 1101 (1176)
.+...+ ...++|||||+|++|++ .+.|||.|++|.+.+.+ +.......+++|++|||||+||++|+++||.+|
T Consensus 175 ~~~~~l--~~~~~iiDGE~V~~~~~---~~~~F~~Lq~r~~~k~~--v~~~~~~~~~~~~aFDlL~~dG~dL~~~pl~eR 247 (444)
T COG1793 175 AAAEAL--PADDFILDGEIVVLDEE---GRLDFQALQQRLRRKYD--VAKLRRETPLVLFAFDLLYLDGEDLRGLPLEER 247 (444)
T ss_pred HHHhcC--CCCceEEeeeEEEECCC---CCCCHHHHHHHhhhccc--hhhhccCCceEEEEEEEEeECCcccccCchHHH
Confidence 666543 55699999999999974 57899999999876543 455567889999999999999999999999999
Q ss_pred HHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1102 RKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1102 r~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
|++|++++ ... +++.+++.+.+ .+.++++.+|+.+++.|+||||+|..+ |+|+||+|+++|
T Consensus 248 r~~Le~lv-~~~-~~~~~~~~i~~----------~~~~~~~~~~~~a~~~g~EGvv~K~~d--s~Y~~g~R~~~W 308 (444)
T COG1793 248 RALLEELV-KSS-DKIEIAERIPF----------SDAEEGEAFLEAAIELGLEGVVAKRPD--SPYRAGGRSNKW 308 (444)
T ss_pred HHHHHHHh-ccc-cccccccceec----------cChhhHHHHHHHHHhcCceEEEEeCCC--CCcCCCCCCCcc
Confidence 99999999 332 55666666654 467899999999999999999999887 999999999999
|
|
| >PHA02587 30 DNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=407.48 Aligned_cols=328 Identities=19% Similarity=0.248 Sum_probs=244.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCChHHHHHH
Q 001045 719 ARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDM 798 (1176)
Q Consensus 719 ~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~~~i~~~ 798 (1176)
=+++++|++|.++++|.++|.+. . +.+.+...++|+.+.+. .|||+ .
T Consensus 3 ~~il~~~~~~~~~~~k~~il~~~-~-----~n~~l~~~~~~~~~~~~------~~~~~---------------~------ 49 (488)
T PHA02587 3 LDILNELASTDSTKEKEAILKEN-K-----DNELLKEVFRLTYNKQI------NFGIK---------------K------ 49 (488)
T ss_pred HHHHHHHHhccCcchHHHHHHhc-c-----cChHHHHHHHHHhCcce------eEeee---------------E------
Confidence 36789999999999999999765 1 33445555566544432 23322 0
Q ss_pred HHhcCChHHHHHHHHhhccccCCCCCCcHHH-HHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhccc
Q 001045 799 YNRLGDLGDVAQECRQTQALLAPPPPLLIKD-VYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR 877 (1176)
Q Consensus 799 ~~~~GDlG~va~~~~~~q~~l~~~~~LTi~e-V~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LR 877 (1176)
|.+.| ..-..+.++++.+ +...+.++|+..-.+ ......|..+|.+|++.|++||+|+|+++||
T Consensus 50 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~l~~ll~~~~~~e~~~l~rli~~~lr 114 (488)
T PHA02587 50 WPKPG-------------HVEGSDGMLSLEDLLDFLEFDLATRKLTG--NAAIEELAQILSSMNEDDAEVLRRVLMRDLE 114 (488)
T ss_pred cCCCc-------------cccCCCCceeHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhCCHHHHHHHHHHHhcccC
Confidence 11111 0011235577777 555666888765554 3446889999999999999999999999999
Q ss_pred cCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCccccCcCCCCC
Q 001045 878 IGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVP 957 (1176)
Q Consensus 878 iG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~~~~~l~~g~P 957 (1176)
||+++++|+.||+ +++|
T Consensus 115 iGvs~~~i~~~~~---------------------------------------------------------------~~~P 131 (488)
T PHA02587 115 CGASEKIANKVWK---------------------------------------------------------------GLIP 131 (488)
T ss_pred CCccHHHHHHHhc---------------------------------------------------------------CCcc
Confidence 9999999987641 1589
Q ss_pred ccC-CCCcccCChhHHHHh-ccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcC---CCCC
Q 001045 958 IKP-MLAKITNGVPQVLKL-FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCK---PAAG 1032 (1176)
Q Consensus 958 i~P-MLA~~~~~~~~~~~~-~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~---~~~~ 1032 (1176)
++| |||++... +.+++ ++ .+|++|+||||+|||+|+ .++.|++|||||++++. ||+|.+.+..... ..+.
T Consensus 132 ~~p~mLA~~~~~--~~~~~~~~-~~~~~E~K~DG~R~q~h~-~~~~v~l~SR~g~~~~~-~p~i~~~l~~~~~~~~~~~~ 206 (488)
T PHA02587 132 EQPQMLASSFSE--KLIKKNIK-FPAYAQLKADGARCFADI-DADGIEIRSRNGNEYLG-LDLLKEELKKMTAEARQRPG 206 (488)
T ss_pred CCCCccCCCCCH--HHHHhhcc-CcEEEEEccCceEEEEEE-eCCEEEEEecCCccccC-ChhHHHHHHHHhhhhcccCC
Confidence 987 99998543 45655 54 489999999999999999 48999999999999974 8999988876532 1247
Q ss_pred CeEEEEEEEEEecCCCCcccCh-------------HHHhhhhcCCCCchhhh-----cccccceEEEEEEeeeeC---Cc
Q 001045 1033 TFILDAEVVAIDRKNGCKIMSF-------------QELSSRERGGKDSVITI-----KSVKVDICVFVFDIMFAN---GE 1091 (1176)
Q Consensus 1033 ~~ILDGElVa~d~~~g~~~~pF-------------q~L~~R~r~~~~~~i~~-----~~~~~~v~~~vFDiL~ln---G~ 1091 (1176)
+||||||+|+||..++ .+.+| |.++.|.++..-..... .....+++|++||||+++ |.
T Consensus 207 ~~VLDGElv~~~~~~~-~~~~~~f~~~~~~~~~f~q~l~~R~~~~~i~~~~l~~~~~~~~~~pv~~~vFDiL~ld~y~~~ 285 (488)
T PHA02587 207 GVVIDGELVYVEVETK-KPNGLSFLFDDSKAKEFVGVVADRATGNGIVNKSLKGTISKEEAQEIVFQVWDIVPLEVYYGK 285 (488)
T ss_pred cEEEEeEEEEEecccC-CCccchhhcccccccchhhhhhhhhhccchhhhhhccccchhhccceEEEEEEeechhhccCC
Confidence 8999999999987653 44454 78888864321110000 134578999999999653 44
Q ss_pred ccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1092 QLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1092 ~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
.+++.||.+||++|++++.....+++.+++...+ ++.++++++|+++++.|+||||+|+++ |+|+||
T Consensus 286 ~~~~~pl~eRr~~L~~l~~~~~~~~i~l~~~~~~----------~~~ee~~~~~~~a~~~G~EGimlK~~d--s~Y~~G- 352 (488)
T PHA02587 286 EKSDMPYDDRFSKLAQMFEDCGYDRVELIENQVV----------NNLEEAKEIYKRYVDQGLEGIILKNTD--GLWEDG- 352 (488)
T ss_pred ccccCCHHHHHHHHHHHHhhcCCCcEEEEeeEEc----------CCHHHHHHHHHHHHhCCCCeEEEECCC--CCCCCC-
Confidence 5788999999999999994344568888887764 468999999999999999999999998 999999
Q ss_pred CCCCC
Q 001045 1172 RSDSW 1176 (1176)
Q Consensus 1172 Rs~~W 1176 (1176)
|+.+|
T Consensus 353 Rs~~W 357 (488)
T PHA02587 353 RSKDQ 357 (488)
T ss_pred CCCCc
Confidence 88888
|
|
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=384.69 Aligned_cols=330 Identities=43% Similarity=0.703 Sum_probs=280.7
Q ss_pred CCCCCCeeEeCCccEEEecCCcCC-CCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEeCCC
Q 001045 35 PRTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIK 113 (1176)
Q Consensus 35 ~r~~p~~~~ipg~~~liD~~~~~~-~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~ 113 (1176)
+..++-|.+.||..|.||+|++.. ..+.++|+||+|+||+.||...|.+++|||++.|+.++...++++...++.++.+
T Consensus 86 ~~p~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~ 165 (481)
T KOG1361|consen 86 RIPLHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLN 165 (481)
T ss_pred CCCCcceeecCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcccChhhceeecCC
Confidence 345566777899999999998866 6789999999999999999999999999999999999999999998899999999
Q ss_pred ceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCC
Q 001045 114 IPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPL 193 (1176)
Q Consensus 114 ~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~ 193 (1176)
+++.+.++.|++++|+||||++||+|+...+ ..+|||||||+...+...|++.....+|.|++|+||+++.+.||+
T Consensus 166 ~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~----~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fps 241 (481)
T KOG1361|consen 166 QPLEIPGIQVTLLDANHCPGAVMFLFELSFG----PCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPS 241 (481)
T ss_pred CceeecceEEEEeccccCCCceEEEeecCCC----ceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCcc
Confidence 9999999999999999999999999998763 699999999999999888865555799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEEccchHHHHHHhCCCCCCccc-cCCC
Q 001045 194 QEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFT-EDES 272 (1176)
Q Consensus 194 ~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~vdg~~~~il~~lg~~~~~~~t-~d~~ 272 (1176)
++++++.+++++...... +.++|+++++|++|++..++++|+.++.+|++..+.+.+++.+|..+...++ .+..
T Consensus 242 q~esvq~v~~~i~~~~~~-----~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~~~~s~d~~ 316 (481)
T KOG1361|consen 242 QEESVQEVVDVIRSHASK-----NDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDESKLLSIDVD 316 (481)
T ss_pred HHHHHHHHHHHHHhhhhh-----CCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChhhhhccccc
Confidence 999999999999987665 3689999999999999999999999999999999999999999977544444 4777
Q ss_pred CCeEEEecChHH-----------HHhcCCCceEEEEeccceeecccCcee----eeccCCeeEEEEeecCCCCHHHHHHH
Q 001045 273 ETDVHVVGWNEI-----------MVERGYDKVVGFVPTGWTYEVKRNKFA----VRSKDAFEIHLVPYSEHSNYDELREY 337 (1176)
Q Consensus 273 ~~~I~v~~~~~~-----------~~~~g~~~~v~i~ptGw~~~~~~~~~~----v~~~~~~~v~~i~~SgHAs~~EL~~~ 337 (1176)
+..+|+.+++.. ....++..++++.|+||+.....+... ......+.++.+|||.|++|.||.+|
T Consensus 317 ~ssvhv~~~~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~~~~~~~i~~~~vpYseHSs~~el~~f 396 (481)
T KOG1361|consen 317 ESSVHVVPMNSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSLDKENSRPQSGSKIPISLVPYSEHSSYTELSEF 396 (481)
T ss_pred cCceeEeehhhhccccchhhhhcccccCcceeEeecccccccccccccCccccccccccccccccccccccCCHHHHHHH
Confidence 888999887722 122456789999999999654322211 11222467789999999999999999
Q ss_pred HHHcCCCEEEEEecCCCCcCchHHH-HHHHHHHHHHH
Q 001045 338 VKFLKPKRVIPTVGMDIEKLDSKHA-NKMRKYFAGLV 373 (1176)
Q Consensus 338 V~~lrPk~VIPvHG~~~e~~~~~E~-~~m~k~f~~l~ 373 (1176)
++.++|+.|||+++.+++..+..+. ..|...+..+.
T Consensus 397 ~~~lk~k~iiptv~~~~~~~~~~~~~~~k~s~~~~~~ 433 (481)
T KOG1361|consen 397 LSKLKPKTIIPTVNEDTELSDATEVPEEKSSLLLSWP 433 (481)
T ss_pred HHhcCCCeeecCccCCccccchhhhhhhhhhhhccch
Confidence 9999999999999999866666555 45555444333
|
|
| >cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=359.01 Aligned_cols=201 Identities=36% Similarity=0.609 Sum_probs=173.8
Q ss_pred CCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCC
Q 001045 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGT 1033 (1176)
Q Consensus 954 ~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~ 1033 (1176)
||.|++||||+++.++++++++. +.+|++|+||||+|||+|+ .++.|++|||||+++|..||+|.+.+...+ ...+
T Consensus 1 ~~~p~~PmLA~~~~~~~~~~~~~-~~~~~~E~K~DG~R~~~~~-~~~~v~~~SR~~~~~t~~~pel~~~~~~~~--~~~~ 76 (207)
T cd07901 1 VGRPVRPMLAQRAPSVEEALIKE-GGEAAVEYKYDGIRVQIHK-DGDEVRIFSRRLEDITNALPEVVEAVRELV--KAED 76 (207)
T ss_pred CCCCCccccCCCCCCHHHHHHhc-CCcEEEEEeEcceeEEEEE-eCCEEEEEeCCCccccchhhHHHHHHHhcC--CCCC
Confidence 68999999999998888776665 5789999999999999999 488999999999999999999999888753 2478
Q ss_pred eEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1034 ~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
||||||||+||+ +| .+.+|+.|++|.++... +.......+++|+|||||++||++++++||.+||++|++++ ...
T Consensus 77 ~iLDGElv~~~~-~g-~~~~F~~l~~r~~~~~~--~~~~~~~~~~~~~vFDil~~~g~~l~~~pl~eR~~~L~~~~-~~~ 151 (207)
T cd07901 77 AILDGEAVAYDP-DG-RPLPFQETLRRFRRKYD--VEEAAEEIPLTLFLFDILYLDGEDLLDLPLSERRKILEEIV-PET 151 (207)
T ss_pred EEEeCEEEEECC-CC-CccCHHHHHHHhccccc--hhhhhccCcEEEEEEEEEEECCcchhcCCHHHHHHHHHHhc-CcC
Confidence 999999999996 54 67899999999654322 22222356899999999999999999999999999999999 443
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+.+.++++..+ .+.+++.++|++++++|+||||+|+++ |+|.||+||.+|
T Consensus 152 -~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGiv~K~~~--s~Y~~g~Rs~~w 201 (207)
T cd07901 152 -EAILLAPRIVT----------DDPEEAEEFFEEALEAGHEGVMVKSLD--SPYQAGRRGKNW 201 (207)
T ss_pred -CcEEEEEEEec----------CCHHHHHHHHHHHHHcCCceEEEeCCC--CCcCCCCCCCCe
Confidence 67888887764 467999999999999999999999998 999999999999
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny |
| >cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=360.41 Aligned_cols=208 Identities=31% Similarity=0.495 Sum_probs=179.8
Q ss_pred ccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHH-----
Q 001045 949 TLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISII----- 1023 (1176)
Q Consensus 949 ~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l----- 1023 (1176)
.+.++||.||+||||+++++....+..+.+.+|++|+||||+|||+|++ ++.|++|||||+++|..||++....
T Consensus 3 ~~~~~~~~p~~PmLa~~~~~~~~~~~~~~~~~~~~E~K~DG~R~~i~~~-~~~v~l~SR~g~~~t~~~p~~~~~~~~~~~ 81 (225)
T cd07903 3 DLSIELFSPFRPMLAERLNIGYVEIKLLKGKPFYIETKLDGERIQLHKD-GNEFKYFSRNGNDYTYLYGASLTPGSLTPY 81 (225)
T ss_pred CceeecCCcCccccCCCCCCHHHHHHhhcCCeEEEEEeeCceEEEEEec-CCEEEEEeCCCccccccccccccccccchh
Confidence 4678999999999999999877766788889999999999999999994 8999999999999999999987653
Q ss_pred -HhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHH
Q 001045 1024 -NEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRR 1102 (1176)
Q Consensus 1024 -~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr 1102 (1176)
...+.....+||||||||+||..+ +.+.||+.|+++.+.... .....+++|++||||++||++++++||.+|+
T Consensus 82 l~~~~~~~~~~~iLDGElv~~~~~~-~~~~~f~~l~~~~~~~~~-----~~~~~~~~~~vFDiL~~~g~~l~~~pl~eR~ 155 (225)
T cd07903 82 IHLAFNPKVKSCILDGEMVVWDKET-KRFLPFGTLKDVAKLREV-----EDSDLQPCFVVFDILYLNGKSLTNLPLHERK 155 (225)
T ss_pred hhhhccccCcEEEeceEEEEEEcCc-CeeccchHHHHHHhhccc-----ccCCccEEEEEEEEEEECCeecccCcHHHHH
Confidence 233445678999999999999765 478999999876543210 1235679999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1103 KYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1103 ~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
++|++++ .+.++++.++++..+ ++.+++.++|++++++|+||||+|+++ |+|+||+||.+|
T Consensus 156 ~~L~~~~-~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~~--s~Y~~g~Rs~~w 216 (225)
T cd07903 156 KLLEKII-TPIPGRLEVVKRTEA----------STKEEIEEALNEAIDNREEGIVVKDLD--SKYKPGKRGGGW 216 (225)
T ss_pred HHHHHhc-CCCCCeEEEEEEEeC----------CCHHHHHHHHHHHHHcCCceEEEecCC--CCCccCCcCCCc
Confidence 9999999 556678999888764 467899999999999999999999998 999999999998
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligase in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent protein kinase. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more di |
| >cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=354.27 Aligned_cols=197 Identities=22% Similarity=0.360 Sum_probs=168.7
Q ss_pred CCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeE
Q 001045 956 VPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFI 1035 (1176)
Q Consensus 956 ~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~I 1035 (1176)
+|++||||+++.+..+.+ .....|++|+||||+|||+|+ .++.|++|||||+++|..||++...+.. .+.+||
T Consensus 3 ~~~~pmLA~~~~~~~~~~--~~~~~~~~E~K~DG~R~~~~~-~~~~v~l~SR~g~~~t~~~p~l~~~~~~----l~~~~i 75 (207)
T cd07897 3 RPYPFMLAHPLEDDPEDL--GDPSDWQAEWKWDGIRGQLIR-RGGEVFLWSRGEELITGSFPELLAAAEA----LPDGTV 75 (207)
T ss_pred CCCCceeCCcCCCchhhh--cCcccEEEEEeEceEEEEEEE-cCCEEEEEeCCCCcccccchHHHHHHHh----CCCCeE
Confidence 799999999999877654 345689999999999999999 5889999999999999999999987765 246899
Q ss_pred EEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC
Q 001045 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115 (1176)
Q Consensus 1036 LDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~ 1115 (1176)
||||||+||. +...||+.|++|.+..... .......+++|++|||||+||++++++||.+||++|++++.....+
T Consensus 76 LDGElv~~~~---~~~~~F~~l~~r~~~~~~~--~~~~~~~~~~~~vFDil~l~g~~l~~~pl~eRr~~L~~l~~~~~~~ 150 (207)
T cd07897 76 LDGELLVWRD---GRPLPFNDLQQRLGRKTVG--KKLLAEAPAAFRAYDLLELNGEDLRALPLRERRARLEALLARLPPP 150 (207)
T ss_pred EEeEEEEecC---CCccCHHHHHHHhcccccc--hhhHhhCCeEEEEEeeeeECceEhhhCCHHHHHHHHHHhhhhcCCC
Confidence 9999999985 2679999999996533221 1112357899999999999999999999999999999999332247
Q ss_pred cEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1116 YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1116 ~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
++.++++..+ .+.+++.++|++++++|+||||+|+++ |+|+||+|+.+|
T Consensus 151 ~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGiv~K~~~--s~Y~~Grr~~~W 199 (207)
T cd07897 151 RLDLSPLIAF----------ADWEELAALRAQSRERGAEGLMLKRRD--SPYLVGRKKGDW 199 (207)
T ss_pred ceeecceEec----------CCHHHHHHHHHHHHHcCCeEEEEeCCC--CCcCCCCcCCCe
Confidence 7888887764 478999999999999999999999998 999999999998
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenylation domain binds ATP and contains many of the active site residues. |
| >cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=352.80 Aligned_cols=200 Identities=29% Similarity=0.502 Sum_probs=173.4
Q ss_pred ccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC-CchhHHHHHHhhc
Q 001045 949 TLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS-RFPDLISIINEFC 1027 (1176)
Q Consensus 949 ~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~-~ypdl~~~l~~~~ 1027 (1176)
.+.+++|.|++||||+++++++++++++. ..|++|+||||+|||+|+ .++.|++|||||+++|. .||++.+.+.+.+
T Consensus 5 ~~~~~~~~p~~PmLA~~~~~~~~~i~~~~-~~~~~E~K~DG~R~~i~~-~~~~v~l~SR~g~~~t~~~~~~~~~~~~~~~ 82 (213)
T cd07902 5 SVRASLMTPVKPMLAEACKSVEDAMKKCP-NGMYAEIKYDGERVQVHK-QGDNFKFFSRSLKPVLPHKVAHFKDYIPKAF 82 (213)
T ss_pred eEEeEcCCcccCccCCcCCCHHHHHHhcC-CceEEEeccCCEEEEEEE-cCCEEEEEcCCCcccccchhHHHHHHHHHhc
Confidence 46789999999999999988887777653 469999999999999999 47899999999999996 6899988888765
Q ss_pred CCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHH
Q 001045 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKD 1107 (1176)
Q Consensus 1028 ~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~ 1107 (1176)
. ...+||||||||+||.++| .+++|+.++.|.+... ...+++|++||||++||.+++++||.+||++|++
T Consensus 83 ~-~~~~~iLDGEiv~~d~~~g-~~~~F~~l~~~~~~~~--------~~~~v~~~vFDiL~l~g~~l~~~pl~eR~~~L~~ 152 (213)
T cd07902 83 P-HGHSMILDSEVLLVDTKTG-KPLPFGTLGIHKKSAF--------KDANVCLFVFDCLYYNGESLMDKPLRERRKILED 152 (213)
T ss_pred c-cccceeeeeEEEEEECCCC-cccccchhhhhhcccc--------ccCceEEEEEEEeeeCCcchhcCcHHHHHHHHHH
Confidence 3 3689999999999998775 7789999998755311 2347999999999999999999999999999999
Q ss_pred hhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCC
Q 001045 1108 LFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRS 1173 (1176)
Q Consensus 1108 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs 1173 (1176)
++ .+.++++.++++..+ .+.+++.++|++++++|+||||+|+++ |+|.||+|+
T Consensus 153 ~~-~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~EGvV~K~~~--s~Y~~G~r~ 205 (213)
T cd07902 153 NM-VEIPNRIMLSEMKFV----------KKADDLSAMIARVIKEGLEGLVLKDLK--SVYEPGKRH 205 (213)
T ss_pred hc-cCCCCeEEEEEEEEc----------CCHHHHHHHHHHHHHCCCCeEEEeCCC--CCccCCCCC
Confidence 99 555667888887764 467899999999999999999999998 999999983
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nuc |
| >cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=348.98 Aligned_cols=201 Identities=22% Similarity=0.375 Sum_probs=165.9
Q ss_pred CChhHHHHhccCceEEEEEecceeEEEEEEe---eCCeEEEEcCCCccCCCCchhHHHHHHhhcC------CCCCCeEEE
Q 001045 967 NGVPQVLKLFQNKAFTCEYKYDGQRAQIHKL---VDGTVRIFSRNGDETTSRFPDLISIINEFCK------PAAGTFILD 1037 (1176)
Q Consensus 967 ~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~---~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~------~~~~~~ILD 1037 (1176)
+++..+++.+++..|++|+||||+|||+|+. .++.|++|||||+++|..||++.+.+...+. +.+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~~~~~~~~v~lfSR~~~d~T~~~pel~~~~~~~~~~~~~~~~~~~~~ILD 89 (235)
T cd08039 10 RSIKHCCKMIGSRRMWVETKYDGEYCQIHIDLSKDSSPIRIFSKSGKDSTADRAGVHSIIRKALRIGKPGCKFSKNCILE 89 (235)
T ss_pred cCHHHHHHHhCCCcEEEEEeecceEEEEEEecccCCCEEEEEeCCCCcccccchhHHHHHHHHhhccccccCCCccEEEE
Confidence 3577888999999999999999999999984 1789999999999999999999988776542 236799999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCC----chhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKD----SVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~----~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
||||+||+.+| ++.|||.|++|.+.... ..........++||++|||||+||++|++.||.+||++|++++ .+.
T Consensus 90 GEiVv~d~~~g-~~~~F~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~vFDlL~lnG~~l~~~pl~eRr~~L~~l~-~~~ 167 (235)
T cd08039 90 GEMVVWSDRQG-KIDPFHKIRKHVERSGSFIGTDNDSPPHEYEHLMIVFFDVLLLDDESLLSKPYSERRDLLESLV-HVI 167 (235)
T ss_pred eEEEEEECCCC-ccCCHHHHHhhcccccchhccccccccccccceEEEEEEEEEECChhhhcCCHHHHHHHHHHhc-ccC
Confidence 99999998665 78999999988542210 0011123457899999999999999999999999999999999 666
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCC-----CCCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR-----SDSW 1176 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkR-----s~~W 1176 (1176)
++++.+++...+... ...+.++++++|++++++|+||||+|+++ |+|.||+| +..|
T Consensus 168 ~~~~~~~~~~~i~~~-----~~~~~~~l~~~~~~a~~~g~EGIv~K~~~--S~Y~pgr~~~~~r~~~W 228 (235)
T cd08039 168 PGYAGLSERFPIDFS-----RSSGYERLRQIFARAIAERWEGLVLKGDE--EPYFDLFLEQGSFSGCW 228 (235)
T ss_pred CCcEEEEEEEeeccc-----CCCCHHHHHHHHHHHHHcCCceEEEecCC--CCcccCcccccccCCCe
Confidence 788888887765321 12467899999999999999999999998 99999854 5788
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site res |
| >cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=341.80 Aligned_cols=195 Identities=35% Similarity=0.541 Sum_probs=168.7
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
|+||||+++++++++ .++.+..|++|+||||+|||+|+ .++.|++|||+|+++|..||++...+.. .+.+||||
T Consensus 1 i~pmLa~~~~~~~~~-~~~~~~~~~~E~K~DG~R~~~~~-~~~~v~l~SR~g~~~t~~~p~i~~~~~~----~~~~~vLD 74 (201)
T cd07898 1 IKPMLAHPEESAEAA-KAKKPAAAWVEDKYDGIRAQVHK-DGGRVEIFSRSLEDITDQFPELAAAAKA----LPHEFILD 74 (201)
T ss_pred CCCeecCcCCChHHH-HhhCCCeEEEEEeeceEEEEEEE-eCCEEEEEcCCChhchhhhhhHHHHHHh----CCCCEEEE
Confidence 689999999988765 66778899999999999999999 4789999999999999999999987764 35899999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
||||+||.. ...||+.+++|.++.... .......+++|++||||++||++++++||.||+++|++++ ...++.+
T Consensus 75 GElv~~~~~---~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~vFDil~~~g~~l~~~p~~eR~~~L~~~~-~~~~~~i 148 (201)
T cd07898 75 GEILAWDDN---RGLPFSELFKRLGRKFRD--KFLDEDVPVVLMAFDLLYLNGESLLDRPLRERRQLLEELF-VEIPGRI 148 (201)
T ss_pred EEEEEEeCC---CCCcHHHHHHHhcccccc--hhhhccCcEEEEEEeEEeECCcchhhCCHHHHHHHHHHhh-cCCCCcE
Confidence 999999863 346999999885432221 1113457899999999999999999999999999999999 5567889
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+++...+ ++.+++.++|++++++|+||||+|+++ |+|+||+||.+|
T Consensus 149 ~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGim~K~~~--s~Y~~g~Rs~~w 195 (201)
T cd07898 149 RIAPALPV----------ESAEELEAAFARARARGNEGLMLKDPD--SPYEPGRRGLAW 195 (201)
T ss_pred EEeeeEEc----------CCHHHHHHHHHHHHHcCCceEEEeCCC--CCcCCCCcCCCc
Confidence 99888764 467899999999999999999999998 999999999999
|
ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f |
| >cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=333.21 Aligned_cols=187 Identities=26% Similarity=0.430 Sum_probs=158.2
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
|+||||..+.++++ +.+|++|+||||+|||+|+ .++.|++|||||+++|..||++.+++... .+.+||||
T Consensus 1 i~PmLa~~~~~~~~------~~~~~~E~K~DG~R~~~~~-~~~~v~l~SR~g~~~t~~~p~~~~~~~~~---~~~~~iLD 70 (194)
T cd07905 1 VEPMLARAVDALPE------PGGWQYEPKWDGFRCLAFR-DGDEVRLQSRSGKPLTRYFPELVAAARAL---LPPGCVLD 70 (194)
T ss_pred CCceeCCccCCCCC------CCceEEEeeeceEEEEEEE-eCCEEEEEeCCCCchhhhhHHHHHHHHhh---CCCCEEEE
Confidence 68999999876654 5789999999999999999 58899999999999999999999988874 35689999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
||||+||.. . .+|+.|++|.+.... .+.......+++|++|||||+||+++++.||.+||++|++++ ....+.+
T Consensus 71 GElv~~~~~---~-~~F~~l~~r~~~~~~-~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~-~~~~~~i 144 (194)
T cd07905 71 GELVVWRGG---R-LDFDALQQRIHPAAS-RVRRLAEETPASFVAFDLLALGGRDLRGRPLRERRAALEALL-AGWGPPL 144 (194)
T ss_pred eEEEEEcCC---C-CCHHHHHHHhccccc-chhhhhccCCEEEEEEeeeeeCCcccccCCHHHHHHHHHHHh-cccCCCe
Confidence 999999852 2 499999999754322 122334567899999999999999999999999999999999 4445677
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+++.. .+.+++.++|++++++|+||||+|+++ |+|+||+| +|
T Consensus 145 ~~~~~~------------~~~~~~~~~~~~~~~~g~EGiv~K~~~--s~Y~~Gr~--~W 187 (194)
T cd07905 145 HLSPAT------------TDRAEAREWLEEFEGAGLEGVVAKRLD--GPYRPGER--AM 187 (194)
T ss_pred EECCcc------------CCHHHHHHHHHHHHHCCCceEEEeCCC--CCcCCCCC--cE
Confidence 776642 356799999999999999999999998 99999974 46
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is |
| >PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=333.72 Aligned_cols=198 Identities=36% Similarity=0.636 Sum_probs=174.0
Q ss_pred CCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEE
Q 001045 960 PMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAE 1039 (1176)
Q Consensus 960 PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGE 1039 (1176)
||||+++.+++++++++ +.+|++|+||||+|||||+ .++.|++|||+|+++|..||++...+...+.+...+||||||
T Consensus 1 PmLA~~~~~~~~~~~~~-~~~~~~e~K~DG~R~~i~~-~~~~v~~~SR~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDGE 78 (202)
T PF01068_consen 1 PMLAQPFDSIEKALKKF-GGPWYVEPKYDGVRCQIHK-DGGGVRLFSRNGKDITSQFPELAEALRELLFPDGPDFVLDGE 78 (202)
T ss_dssp -EEEEEESSHHHHHHHT-TSCEEEEEEESSEEEEEEE-ETTEEEEEETTSSB-GGGHHHHHHHHHHHBCTSCTEEEEEEE
T ss_pred CcCCccccCHHHHHHhc-CCCeEEEEeEeeEEeeeee-ccccceeecccccchhhHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 99999999999999998 7899999999999999999 699999999999999999999999999987777778999999
Q ss_pred EEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEE
Q 001045 1040 VVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQY 1119 (1176)
Q Consensus 1040 lVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~ 1119 (1176)
||+||+.++ ...||+.++.+.++.... + .....+++|++||||++||.+++++||.+|+++|++++ ....+.+.+
T Consensus 79 lv~~d~~~~-~~~~f~~~~~~~~~~~~~-~--~~~~~~~~~~vFDil~l~~~~l~~~p~~eR~~~L~~~~-~~~~~~i~~ 153 (202)
T PF01068_consen 79 LVVLDPNTG-SPLPFQELSGRLNRRSKK-I--PEQSEPLQFVVFDILYLDGKDLLDLPYEERRELLEELL-EPPPPRIRI 153 (202)
T ss_dssp EEEBETTTS-SBCCHHHHHHHHBHSSSC-H--HHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHB-G-BTSSEEE
T ss_pred EEEEecCCC-cchhHHHHhhhhhhhccc-c--hhccCcEEEEEEEEEEeCCeEeeeccHHHHHHHHHHhh-ccCCCceeE
Confidence 999999875 889999999997432211 1 11267899999999999999999999999999999999 666788999
Q ss_pred eEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1120 AKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1120 ~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
++...+ .+.++++++|+++++.|+||||+|+++ ++|+||+|+.+|
T Consensus 154 ~~~~~~----------~~~~~~~~~~~~~~~~g~EG~v~K~~~--~~Y~~Gkrs~~w 198 (202)
T PF01068_consen 154 VESYVV----------NSKEELEELFEEAIDQGFEGLVLKDPD--SPYEPGKRSSGW 198 (202)
T ss_dssp EEEEEE----------SSHHHHHHHHHHHHHTTSSEEEEEETT--SSC-TTEEEEEE
T ss_pred eeeecC----------CCHHHHHHHHHHHHHcCCceEEEECCC--CccCCCCcCCCc
Confidence 998775 468999999999999999999999988 999999998887
|
It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A .... |
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=345.50 Aligned_cols=309 Identities=21% Similarity=0.324 Sum_probs=235.4
Q ss_pred CCCCCCeeE-eCCccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCCC---CceEEeCHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITS 93 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~ 93 (1176)
+.+.+|.++ .|..++|+||+-. ....+|||+|||||.||+|-||.++. .+|||||++|.
T Consensus 191 EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTR 270 (637)
T COG1782 191 EVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTR 270 (637)
T ss_pred hccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCCCcH
Confidence 567788888 8999999999811 11359999999999999999998764 89999999999
Q ss_pred HHHHHhh----------ccCC-----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCcccEE
Q 001045 94 RLLSQIL----------NINP-----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 94 ~ll~~~l----------~~~~-----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~I 151 (1176)
+++-... |-.+ ....++++|+..+| .++++||+.|||+.||+|..++..+ |. .+|
T Consensus 271 Dlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGd--Gl-yNi 347 (637)
T COG1782 271 DLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGD--GL-YNI 347 (637)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecC--Cc-eeE
Confidence 9987543 1111 23678999999998 5899999999999999999999965 32 799
Q ss_pred EEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccch
Q 001045 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGK 231 (1176)
Q Consensus 152 lYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR 231 (1176)
+|||||++..+.+.+++...|++++.||+|+||+.+...+|+++++++++.+.+.+++.+ ||+ ||||+|++||
T Consensus 348 ~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~r-----GGK--vLIP~fAVGR 420 (637)
T COG1782 348 VYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKR-----GGK--VLIPVFAVGR 420 (637)
T ss_pred EEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhc-----CCe--EEEEeeeccc
Confidence 999999999999999998888999999999999988888999999999999999999888 788 7999999999
Q ss_pred HHHHHHHHHHc---C----CcEEEccchHHHHHHh-CCC---------------C----CCccccC-----------CCC
Q 001045 232 EKILIEIFKKC---G----RKVCVDSRKMEVLRVL-GYG---------------D----SGVFTED-----------ESE 273 (1176)
Q Consensus 232 ~q~ll~ia~~~---g----~~I~vdg~~~~il~~l-g~~---------------~----~~~~t~d-----------~~~ 273 (1176)
.|+++-++++. | .|||+||+.++..... .|| . ...|..- ..+
T Consensus 421 ~QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~~e 500 (637)
T COG1782 421 SQEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIESDE 500 (637)
T ss_pred cceehhHHHHHHhcCCCCCCceeeeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcCCC
Confidence 99999888764 2 6999999988643211 111 1 1111100 002
Q ss_pred CeEEEecCh--------HHHHhcCCCceEEEEeccceeecccCce------ee----------eccCCeeEEEE-eecCC
Q 001045 274 TDVHVVGWN--------EIMVERGYDKVVGFVPTGWTYEVKRNKF------AV----------RSKDAFEIHLV-PYSEH 328 (1176)
Q Consensus 274 ~~I~v~~~~--------~~~~~~g~~~~v~i~ptGw~~~~~~~~~------~v----------~~~~~~~v~~i-~~SgH 328 (1176)
..|++..++ +.+.+...++...++..||+++.+.|+- .+ ..+.++.|+.+ .||||
T Consensus 501 p~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGH 580 (637)
T COG1782 501 PAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGH 580 (637)
T ss_pred CeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCC
Confidence 234444333 2222333344444555788887654431 01 13345666666 59999
Q ss_pred CCHHHHHHHHHHcCC--CEEEEEecCC
Q 001045 329 SNYDELREYVKFLKP--KRVIPTVGMD 353 (1176)
Q Consensus 329 As~~EL~~~V~~lrP--k~VIPvHG~~ 353 (1176)
|+..+|.+||+.++| ++|+.+||..
T Consensus 581 sdrrqL~~yvr~~~PkP~ki~~~HGe~ 607 (637)
T COG1782 581 SDRRQLMKYVRRMNPKPEKILLNHGEP 607 (637)
T ss_pred ccHHHHHHHHHhcCCCCceeEeecCCh
Confidence 999999999999955 7999999943
|
|
| >cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.11 Aligned_cols=184 Identities=30% Similarity=0.520 Sum_probs=158.7
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
|+||||+++.++.+ +.+|++|+||||+|||+|+. ++.|++|||+|+++|..||+|...+.+. ...++|||
T Consensus 1 i~pmLa~~~~~~~~------~~~~~~e~K~DG~R~~i~~~-~~~v~~~SR~g~~~t~~~p~l~~~~~~~---~~~~~iLD 70 (190)
T cd07906 1 IEPMLATLVDEPPD------GEDWLYEIKWDGYRALARVD-GGRVRLYSRNGLDWTARFPELAEALAAL---PVRDAVLD 70 (190)
T ss_pred CCCeECCcCCCCCC------CCCeEEEEeEceEEEEEEEE-CCEEEEEcCCCCcchhhhHHHHHHHHhc---CCCCEEEE
Confidence 68999999987643 67899999999999999994 7899999999999999999999887763 46899999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
||||+||.. ...+|+.+++|.+... ......+++|+|||||++||++++++||.||+++|++++ .+.++++
T Consensus 71 GElv~~~~~---~~~~F~~l~~~~~~~~-----~~~~~~~~~~~vFDil~~~~~~~~~~p~~eR~~~L~~~~-~~~~~~i 141 (190)
T cd07906 71 GEIVVLDEG---GRPDFQALQNRLRLRR-----RLARTVPVVYYAFDLLYLDGEDLRGLPLLERKELLEELL-PAGSPRL 141 (190)
T ss_pred eEEEEECCC---CCCCHHHHHHhhcccc-----hhcccCceEEEEEeeeeeCCcchhhCCHHHHHHHHHHHh-ccCCCcE
Confidence 999999964 2479999999976532 123456899999999999999999999999999999999 5556788
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.++++... +.+++|++++++|+||||+|+++ |+|+||+||..|
T Consensus 142 ~~~~~~~~--------------~~~~~~~~~~~~g~EGiv~K~~~--s~Y~~g~rs~~w 184 (190)
T cd07906 142 RVSEHFEG--------------GGAALFAAACELGLEGIVAKRAD--SPYRSGRRSRDW 184 (190)
T ss_pred EECceEcC--------------CHHHHHHHHHHcCCcEEEEecCC--CCcCCCCCCCcc
Confidence 88776532 23789999999999999999998 999999999999
|
Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic cor |
| >PRK08224 ligC ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=346.15 Aligned_cols=193 Identities=25% Similarity=0.418 Sum_probs=162.0
Q ss_pred CcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCC
Q 001045 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPA 1030 (1176)
Q Consensus 951 ~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~ 1030 (1176)
.+.+|.|++||||..+..++ .+.+|++|+||||+|||+|+ .+++|++|||||+++|..||+|.+.+... .
T Consensus 2 ~~~~~~~i~PMLA~~~~~~~------~~~~w~~E~K~DG~R~~~~~-~~~~v~l~SRng~d~t~~fPel~~~~~~~---~ 71 (350)
T PRK08224 2 DLPVMPPVEPMLAKSVDAIP------PGDGWSYEPKWDGFRCLVFR-DGDEVELGSRNGKPLTRYFPELVAALRAE---L 71 (350)
T ss_pred CCCCCCCcCCccCCccCCCC------CCCcEEEEEeECeeEEEEEE-ECCEEEEEeCCCCCchhhhHHHHHHHHhh---C
Confidence 35788999999999876544 24679999999999999999 48899999999999999999999888764 3
Q ss_pred CCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhc
Q 001045 1031 AGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110 (1176)
Q Consensus 1031 ~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~ 1110 (1176)
+.+||||||||+||. + . .+|+.|++|.+.... .+.......+++|++|||||+||++|+++||.+||++|++++
T Consensus 72 ~~~~vLDGEiVv~~~--~-~-~~F~~Lq~r~~~~~~-~~~~~~~~~pv~~~vFDlL~l~G~dl~~~Pl~eRr~~L~~l~- 145 (350)
T PRK08224 72 PERCVLDGEIVVARD--G-G-LDFEALQQRIHPAAS-RVRKLAEETPASFVAFDLLALGDRDLTGRPFAERRAALEAAA- 145 (350)
T ss_pred CCCEEEeeEEEEeCC--C-C-CCHHHHHhhhhcccc-chhhhhhcCCEEEEEEeeeeECCcChhhCCHHHHHHHHHHhc-
Confidence 579999999999983 2 3 899999999653222 233334567899999999999999999999999999999999
Q ss_pred ccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1111 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.. .+.+++++.+ .+.++++++|+++++.|+||||+|+++ |+|+||+|+ |
T Consensus 146 ~~-~~~i~~~~~~------------~~~~~~~~~~~~a~~~G~EGIV~Kr~d--S~Y~~Grr~--W 194 (350)
T PRK08224 146 AG-SGPVHLTPAT------------TDPATARRWFEEFEGAGLDGVIAKPLD--GPYQPGKRA--M 194 (350)
T ss_pred CC-CCcEEEeccc------------CCHHHHHHHHHHHHhCCCcEEEEeCCC--CCcCCCCcC--E
Confidence 33 3456666542 346789999999999999999999998 999999998 7
|
|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=343.09 Aligned_cols=307 Identities=21% Similarity=0.319 Sum_probs=228.6
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC-----------------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA-----------------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITS 93 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~-----------------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~ 93 (1176)
+.+.+|+.+ .++..+++|||-.. ..++++|||||+|.||+|+||.+. +.+|||||+.|+
T Consensus 185 eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~ 264 (630)
T TIGR03675 185 EVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTR 264 (630)
T ss_pred ccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHH
Confidence 345578888 78999999998221 146899999999999999999753 368999999999
Q ss_pred HHHHHhh----------ccCC-----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCcccEE
Q 001045 94 RLLSQIL----------NINP-----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 94 ~ll~~~l----------~~~~-----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~I 151 (1176)
+++...+ +..+ ..+.++++++++.+ ++++|+++++||++||+++.|+..++ + .+|
T Consensus 265 ~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg-~--~~I 341 (630)
T TIGR03675 265 DLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDG-L--YNI 341 (630)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCC-C--EEE
Confidence 9876543 1111 23678999999999 58999999999999999999987542 2 589
Q ss_pred EEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccch
Q 001045 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGK 231 (1176)
Q Consensus 152 lYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR 231 (1176)
+|||||++....+..+....+.++|+||+||||+++.+.++++.+..+++.+.+.+++.+ +|+ |+||+|++||
T Consensus 342 vYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~-----gG~--VLIP~favGR 414 (630)
T TIGR03675 342 VYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKR-----GGK--VLIPVFAVGR 414 (630)
T ss_pred EEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCE--EEEEechhHH
Confidence 999999998877666554445789999999999998777899999999999999999876 788 7999999999
Q ss_pred HHHHHHHHHHc-------CCcEEEccchHHHHHHh----CCC------------CC----Cccc--cC---------CCC
Q 001045 232 EKILIEIFKKC-------GRKVCVDSRKMEVLRVL----GYG------------DS----GVFT--ED---------ESE 273 (1176)
Q Consensus 232 ~q~ll~ia~~~-------g~~I~vdg~~~~il~~l----g~~------------~~----~~~t--~d---------~~~ 273 (1176)
.|+++.++.++ ..|||+|++..++...+ .+. .. ..|. .+ ...
T Consensus 415 ~QEll~~L~~~~~~g~lp~~pIy~dg~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~~i~~~~~ 494 (630)
T TIGR03675 415 AQEVMLVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERREIIESDE 494 (630)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEchHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHHHHhcCCC
Confidence 99999888753 36999999766543221 000 00 0010 00 113
Q ss_pred CeEEEecCh--------HHHHhcCCCceEEEEeccceeecccCc--------eee-------eccCCeeEEEEe-ecCCC
Q 001045 274 TDVHVVGWN--------EIMVERGYDKVVGFVPTGWTYEVKRNK--------FAV-------RSKDAFEIHLVP-YSEHS 329 (1176)
Q Consensus 274 ~~I~v~~~~--------~~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~v-------~~~~~~~v~~i~-~SgHA 329 (1176)
..|++++.+ ..+.....++...+..+||+.+.+.++ +.+ ....+++|+.+. |||||
T Consensus 495 p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHa 574 (630)
T TIGR03675 495 PAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHS 574 (630)
T ss_pred CEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccC
Confidence 446665544 122223334444555689998765432 111 123457788887 99999
Q ss_pred CHHHHHHHHHHcCC--CEEEEEec
Q 001045 330 NYDELREYVKFLKP--KRVIPTVG 351 (1176)
Q Consensus 330 s~~EL~~~V~~lrP--k~VIPvHG 351 (1176)
|+.||.+|++.++| ++|+.+||
T Consensus 575 D~~~L~~~v~~~~p~p~~v~lvHG 598 (630)
T TIGR03675 575 DRRQLMNYVRRMQPKPEKILLNHG 598 (630)
T ss_pred CHHHHHHHHHhcCCCCCEEEEEcC
Confidence 99999999999966 99999999
|
This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782. |
| >PRK07636 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.43 Aligned_cols=180 Identities=26% Similarity=0.478 Sum_probs=150.7
Q ss_pred CccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEE
Q 001045 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFIL 1036 (1176)
Q Consensus 957 Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~IL 1036 (1176)
.++||||...... +++.+|++|+||||+|||+|+ .++.|++|||||+++|..||++.... .+.+|||
T Consensus 2 ~~~PmLa~~~~~~------~~~~~~~~E~K~DG~R~~~~~-~~~~v~l~SR~g~~~t~~fPe~~~~~------~~~~~vL 68 (275)
T PRK07636 2 FISPMLLESAKEP------FNSENYITEPKFDGIRLIASK-NNGLIRLYTRHNNEVTAKFPELLNLD------IPDGTVL 68 (275)
T ss_pred CcCCccCCcCCCC------CCCCcEEEEEEEceeEEEEEE-eCCEEEEEeCCCCCchhhhhhHHhhh------cCCCEEE
Confidence 3789999876533 356789999999999999999 58899999999999999999998743 1357999
Q ss_pred EEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCc
Q 001045 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY 1116 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~ 1116 (1176)
|||||+||.. ...+|+.|++|.+.... ....+++|++|||||+||++|+++||.+||++|++++ .+ .+.
T Consensus 69 DGElv~~d~~---g~~~F~~l~~r~~~~~~------~~~~~~~~~vFDlL~~~g~~l~~~pl~eRr~~L~~~~-~~-~~~ 137 (275)
T PRK07636 69 DGELIVLGST---GAPDFEAVMERFQSKKS------TKIHPVVFCVFDVLYINGVSLTALPLSERKEILASLL-LP-HPN 137 (275)
T ss_pred EeEEEEECCC---CCCCHHHHHHHhccccc------cccCceEEEEEEeEEECceehhhCCHHHHHHHHHHhc-CC-CCC
Confidence 9999999963 34699999999664321 1246899999999999999999999999999999999 43 345
Q ss_pred EEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1117 FQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1117 i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+.++++.. ++.+++|+++++.|.||||+|+++ |+|.||+||.+|
T Consensus 138 ~~~~~~~~--------------~~~~~~~~~~~~~g~EGiV~K~~d--s~Y~~g~Rs~~W 181 (275)
T PRK07636 138 VKIIEGIE--------------GHGTAYFELVEERELEGIVIKKAN--SPYEINKRSDNW 181 (275)
T ss_pred EEEccccc--------------ccHHHHHHHHHHcCCcEEEEeCCC--CCCCCCCCCCCe
Confidence 66555432 356789999999999999999998 999999999999
|
|
| >PRK09633 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=349.43 Aligned_cols=191 Identities=26% Similarity=0.410 Sum_probs=156.3
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcC--CCCCCeE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCK--PAAGTFI 1035 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~--~~~~~~I 1035 (1176)
++||||..+..++ .+..|++|+||||+|||+|+ .++.|++|||||+++|.+||+|.+.+..+.. ....+||
T Consensus 1 ~~PMLa~~~~~~p------~g~~w~~E~K~DG~R~~~h~-~~~~V~L~SRng~d~T~~fPel~~~~~~~~~~~~~~~~~I 73 (610)
T PRK09633 1 MKPMQPTLTTSIP------IGDEWRYEVKYDGFRCLLII-DETGITLISRNGRELTNTFPEIIEFCESNFEHLKEELPLT 73 (610)
T ss_pred CCCCcCCcCCCCC------CCCcEEEEEeEcceEEEEEE-ECCEEEEEeCCCCcchhhhhHHHHHHHhhhhccccCCcee
Confidence 5799998877654 36789999999999999999 5889999999999999999999988776432 1224799
Q ss_pred EEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCC-
Q 001045 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM- 1114 (1176)
Q Consensus 1036 LDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~- 1114 (1176)
||||||+||.. ...+|+.|++|.+......+.......+++|++|||||+||++|+++||.+||++|++++. ..+
T Consensus 74 LDGEiVvld~~---g~~~F~~Lq~R~~~~~~~~i~~~~~~~pv~~~vFDlL~lnG~dL~~~PL~eRr~~L~~ll~-~~~~ 149 (610)
T PRK09633 74 LDGELVCLVNP---YRSDFEHVQQRGRLKNTEVIAKSANARPCQLLAFDLLELKGESLTSLPYLERKKQLDKLMK-AAKL 149 (610)
T ss_pred eeeEEEEecCC---CCCCHHHHHhhhhccccchhhhhhcccceEEEEEeecccCCcccccCCHHHHHHHHHHHhh-hccc
Confidence 99999999853 2469999999965433222333345678999999999999999999999999999999993 321
Q ss_pred ---------CcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1115 ---------GYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1115 ---------~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
..+.+ ..+.++++++|+++++.|+||||+|+++ |+|+||+||.+|
T Consensus 150 ~~~~~~~~~~~i~~---------------~~~~~~~~~l~~~a~~~g~EGIV~Kr~d--S~Y~~G~Rs~~W 203 (610)
T PRK09633 150 PASPDPYAKARIQY---------------IPSTTDFDALWEAVKRYDGEGIVAKKKT--SKWLENKRSKDW 203 (610)
T ss_pred ccccccccccceEE---------------cCCHHHHHHHHHHHHHcCCceEEEeCCC--CCCCCCCCCCCe
Confidence 12222 2345689999999999999999999998 999999999999
|
|
| >PRK09632 ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=348.44 Aligned_cols=183 Identities=28% Similarity=0.480 Sum_probs=156.6
Q ss_pred cCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCC
Q 001045 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 952 l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
..++.|++||||+.+... .+.+..|++|+||||+|||+|+ .++.|++|||||+++|.+||+|.+....+ ..
T Consensus 455 ~~~~~~v~PMLA~~~~~~-----~~~~~~w~~E~K~DG~R~~~~~-~~g~vrL~SRnG~d~T~~fPel~~~~~~l---~~ 525 (764)
T PRK09632 455 AEEADDLAPMLATAGTVA-----GLKASQWAFEGKWDGYRLLAEA-DHGALRLRSRSGRDVTAEYPELAALAEDL---AD 525 (764)
T ss_pred CCCCCCCcCccCCcCCCC-----CCCCCCEEEEEEECceeEEEEE-eCCEEEEEeCCCCCccccchhHHHHHhhC---CC
Confidence 467899999999976422 2456789999999999999999 58999999999999999999999865553 34
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
.+||||||||+||.. ...+|+.|++|.+ ..+++|++|||||+||++|+++||.+||++|++++ .
T Consensus 526 ~~~ILDGEiVvld~~---G~~~F~~Lq~r~~------------~~~v~y~vFDLL~lnG~dL~~~Pl~eRR~~L~~l~-~ 589 (764)
T PRK09632 526 HHVVLDGEIVALDDS---GVPSFGLLQNRGR------------DTRVEFWAFDLLYLDGRSLLRKPYRDRRKLLEALA-P 589 (764)
T ss_pred cceeeeeEEEEeCCC---CCCCHHHHhhhhh------------cCCeEEEEEeeeccCCcccccCCHHHHHHHHHHhh-C
Confidence 699999999999974 3469999999832 24699999999999999999999999999999999 3
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
..+.+.+++++. .+++++|+.++++|+||||+|+++ |+|+||+||.+|
T Consensus 590 -~~~~i~~s~~~~--------------~~~~~~l~~a~~~GlEGIVaKr~d--S~Y~pGrRs~~W 637 (764)
T PRK09632 590 -SGGSLTVPPLLP--------------GDGAEALAYSRELGWEGVVAKRRD--STYQPGRRSSSW 637 (764)
T ss_pred -CCCcEEecceec--------------ccHHHHHHHHHHcCCcEEEEeCCC--CCCCCCCcCCCe
Confidence 345677776653 246789999999999999999998 999999999999
|
|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=331.65 Aligned_cols=311 Identities=25% Similarity=0.332 Sum_probs=228.4
Q ss_pred CCCCCCeeE-eCCccEEEecCCcCCCCccEEEeccCChhhhCCcccCCC--C-ceEEeCHHHHHHHHHhhc---cCC--C
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWS--K-GIIFCSEITSRLLSQILN---INP--K 105 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~~~~i~avfITHaH~DHiggL~~l~~--~-~pIY~s~~T~~ll~~~l~---~~~--~ 105 (1176)
+...+|.++ +|+..++.+. ..+++++||||+|.||+||+|+++. . .|||+|+.|+.+++..+. ... .
T Consensus 44 ~~~~~gvDliIPd~~yl~~n----~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~ 119 (555)
T COG0595 44 EDDLLGVDLIIPDFSYLEEN----KDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNEN 119 (555)
T ss_pred ccccccccEEecChHHhhhc----cccceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccC
Confidence 446777766 6777777776 4689999999999999999999876 3 899999999999998874 112 3
Q ss_pred ceEEeCCCceEEECCEEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccchh-h----hhcc--CCCcE
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQP-V----MNEF--AGCDA 177 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~-~----l~~~--~~vDv 177 (1176)
.++.++.+..++++++.|+++++.| ||+|+++.++++. +.|+|||||++++...... . +.++ .++++
T Consensus 120 ~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~-----G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~ 194 (555)
T COG0595 120 ELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPE-----GNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLA 194 (555)
T ss_pred ceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCC-----ccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEE
Confidence 5889999999999999999999999 9999999999987 4899999999998765522 1 2222 68999
Q ss_pred EEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHHHHHHHHHcCCcEEEccchHHH
Q 001045 178 VFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKILIEIFKKCGRKVCVDSRKMEV 255 (1176)
Q Consensus 178 LI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ll~ia~~~g~~I~vdg~~~~i 255 (1176)
||+|||++......++++++.+.+.++++.+ +|+ |++.+|+ ++|.|.++++|.++||++++.|+.|..
T Consensus 195 LisdsTna~~pg~t~SE~~v~~~l~~i~~~a--------~gr--VIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm~~ 264 (555)
T COG0595 195 LISDSTNAENPGFTPSESEVGENLEDIIRNA--------KGR--VIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSMER 264 (555)
T ss_pred EEeCCcccCCCCCCCCHHHHHHHHHHHHHhC--------CCc--EEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhHHH
Confidence 9999999997777899999888888888766 567 5566666 999999999999999999999999865
Q ss_pred H----HHhCCC---CCCccccCC------CCCeEEEecChHH------HHhcCC--------CceEEEE--e-cc--cee
Q 001045 256 L----RVLGYG---DSGVFTEDE------SETDVHVVGWNEI------MVERGY--------DKVVGFV--P-TG--WTY 303 (1176)
Q Consensus 256 l----~~lg~~---~~~~~t~d~------~~~~I~v~~~~~~------~~~~g~--------~~~v~i~--p-tG--w~~ 303 (1176)
+ +.+|+. +..++.... .+..|.++|.+.. .+..+. ...+.|. | +| |..
T Consensus 265 ~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~qgep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~ 344 (555)
T COG0595 265 LIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGSQGEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAV 344 (555)
T ss_pred HHHHHhhcccccCccccccCHHHhccccccceEEEEeCCCCCchhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHH
Confidence 4 445543 222332211 1234667777721 111111 1222222 1 34 221
Q ss_pred ecccCceeeeccCCeeE-----EEEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHHHHHHHHHHHHHHHh
Q 001045 304 EVKRNKFAVRSKDAFEI-----HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEM 376 (1176)
Q Consensus 304 ~~~~~~~~v~~~~~~~v-----~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~~~~ 376 (1176)
....+.+ .+.+.++ ..+|.|||++.+||+.|++.++|+++||+|| |++++.+|.+-....+
T Consensus 345 ~~~~n~l---~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHG---------eyr~~~~~a~la~~~G 410 (555)
T COG0595 345 YRLLNRL---YKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHG---------EYRMLVAHAKLAEEEG 410 (555)
T ss_pred HHHHHHH---HhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCC---------CcHHHHHHHHHHHhcC
Confidence 1111111 1111111 4579999999999999999999999999999 7777777765544443
|
|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=290.44 Aligned_cols=176 Identities=33% Similarity=0.590 Sum_probs=147.4
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCCh
Q 001045 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNR 792 (1176)
Q Consensus 713 ~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~ 792 (1176)
|+|.+||++|+.|++|++|++|+++|++||+.+ .++++.+++|+++++++|+|++|+||||++.|.+++++++|+++
T Consensus 1 m~F~~l~~l~~~l~~~~~~~~k~~~l~~~~~~~---~~~~~~~~~~~~~~~l~P~~d~r~~~i~~~~L~k~~~~~~~~~~ 77 (177)
T PF04675_consen 1 MPFSDLCELFEKLESTSSRLEKIAILSNFFRSW---REEDLGPDLYLLLRLLFPEYDGREYGIGEKLLAKAIAEALGLPE 77 (177)
T ss_dssp GBHHHHHHHHHHHHT---HHHHHHHHHHHHHTS---HCCGHHCHHHHHHTHSSTTTCS---S--HHHHHHHHHHHHTS-H
T ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHc---ccchhhhHHHHHhcccccchhhhHhccchhHHHHHHHHHHcCCH
Confidence 799999999999999999999999999999997 45559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcc-ccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHH
Q 001045 793 SKIRDMYNRLGDLGDVAQECRQTQA-LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRT 871 (1176)
Q Consensus 793 ~~i~~~~~~~GDlG~va~~~~~~q~-~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRi 871 (1176)
+.+++.|++.||+|.+|+.+++++. ....+++|||.+||+.|++||..+|.+|+..|..+|..|+++|+|.|++||+|+
T Consensus 78 ~~~~~~~~~~GD~g~~~~~~~~~~~~~~~~~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~s~~E~k~i~Ri 157 (177)
T PF04675_consen 78 KSIDESYKKVGDLGEVAEEVLQKRKSETSKPSPLTISEVNETLDELAAASGKGSQDEKIDILKELLRRCSPEEAKWIVRI 157 (177)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHTTTS--SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999987655 334578999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCcchhhHHHHHHH
Q 001045 872 LVRNLRIGAMMRTILPALAQ 891 (1176)
Q Consensus 872 Ilk~LRiG~~~~tvl~aLa~ 891 (1176)
|+|+||||+++++|+.|||+
T Consensus 158 il~~lriG~~~~~il~ala~ 177 (177)
T PF04675_consen 158 ILKDLRIGVSEKTILDALAP 177 (177)
T ss_dssp HTT--SSS--HHHHHHHHHH
T ss_pred HhCCCeeCccHHHHHHHhCc
Confidence 99999999999999999874
|
It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A. |
| >TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=310.94 Aligned_cols=169 Identities=28% Similarity=0.483 Sum_probs=142.9
Q ss_pred cCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHH
Q 001045 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQE 1056 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~ 1056 (1176)
.+..|++|+||||+|||+|+ .++.|++|||||+++|..||++...+... ...+||||||||+||.. ...+|+.
T Consensus 10 ~~~~~~~E~K~DG~R~~~~~-~~~~v~l~SR~g~~~t~~~p~l~~~~~~~---~~~~~iLDGElv~~d~~---g~~~F~~ 82 (298)
T TIGR02779 10 TGDDWRYEVKYDGYRCLARI-EGGKVRLISRNGHDWTEKFPILAAALAAL---PILPAVLDGEIVVLDES---GRSDFSA 82 (298)
T ss_pred CCCCEEEEEEEceEEEEEEE-eCCEEEEEeCCCCchHhHhHHHHHHHHhC---CCCcEEEEeEEEEECCC---CCCCHHH
Confidence 46789999999999999999 48899999999999999999998876543 45799999999999973 2469999
Q ss_pred HhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCcccc
Q 001045 1057 LSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDV 1136 (1176)
Q Consensus 1057 L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 1136 (1176)
|++|.+... ..+++|++||||++||++++++||.+||++|++++ ...++.+.+... . ..
T Consensus 83 l~~r~~~~~---------~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~l~-~~~~~~~~~~~~-~----------~~ 141 (298)
T TIGR02779 83 LQNRLRAGR---------DRPATYYAFDLLYLDGEDLRDLPLSERKKLLEELL-KAIKGPLAPDRY-S----------VH 141 (298)
T ss_pred HHhhhhcCC---------CCceEEEEEeeeeECceehhcCCHHHHHHHHHHHh-cccCCCceeEec-c----------cC
Confidence 999976432 26799999999999999999999999999999999 443344333221 1 23
Q ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1137 SLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1137 ~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+.+++.++|++++++|+||||+|+++ |+|+||+ |.+|
T Consensus 142 ~~~~~~~~~~~~~~~g~EGiv~K~~d--s~Y~~Gr-s~~W 178 (298)
T TIGR02779 142 FEGDGQALLEAACRLGLEGVVAKRRD--SPYRSGR-SADW 178 (298)
T ss_pred chhHHHHHHHHHHHcCCceEEEeCCC--CCCCCCC-CCCc
Confidence 56789999999999999999999998 9999995 8888
|
DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the ligase domain. |
| >PRK05972 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=340.94 Aligned_cols=182 Identities=29% Similarity=0.487 Sum_probs=156.1
Q ss_pred CCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeE
Q 001045 956 VPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFI 1035 (1176)
Q Consensus 956 ~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~I 1035 (1176)
.+++||||.....+++ +.+|++|+||||+|||+|+ .++.|++|||||+++|.+||+|...+..+ ...+||
T Consensus 232 ~~i~PMLAt~~~~~p~------g~~W~~E~K~DG~R~~a~~-~gg~vrL~SRnG~d~T~~fPel~~~~~~l---~~~~~I 301 (860)
T PRK05972 232 DFLAPQLATLVDRPPS------GDGWIYEIKFDGYRILARI-EGGEVRLFTRNGLDWTAKLPALAKAAAAL---GLPDAW 301 (860)
T ss_pred cccCcccCccCCCCCC------cCceEEEeeeCcEEEEEEE-ECCEEEEEeCCCCccccccHHHHHHHHhc---CCCcee
Confidence 3589999998776653 5789999999999999999 58899999999999999999999988764 457999
Q ss_pred EEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC
Q 001045 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115 (1176)
Q Consensus 1036 LDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~ 1115 (1176)
||||||+||.. ...+|+.|++|.+... ..+++|++|||||+||++|+++||.+||++|++++.....+
T Consensus 302 LDGEIVvld~~---G~~~F~~Lq~r~~~~~---------~~~v~f~vFDLL~l~G~dL~~~PL~eRr~~L~~ll~~~~~~ 369 (860)
T PRK05972 302 LDGEIVVLDED---GVPDFQALQNAFDEGR---------TEDLVYFAFDLPFLGGEDLRELPLEERRARLRALLEAARSD 369 (860)
T ss_pred EeEEEEEECCC---CCCCHHHHHHHhhccC---------CCceEEEEEeccccCCcccccCCHHHHHHHHHHHhhhcCCC
Confidence 99999999964 3469999999865421 34799999999999999999999999999999999322235
Q ss_pred cEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1116 YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1116 ~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+++++++. .+.+++|+.+++.|+||||+|+++ |+|++| ||.+|
T Consensus 370 ~i~~s~~~~--------------~~g~~ll~~a~~~GlEGIVaKr~d--S~Y~~G-Rs~~W 413 (860)
T PRK05972 370 RIRFSEHFD--------------AGGDAVLASACRLGLEGVIGKRAD--SPYVSG-RSEDW 413 (860)
T ss_pred cEEEeceec--------------chHHHHHHHHHHcCCceEEEeCCC--CCCCCC-CCCCc
Confidence 788877653 246789999999999999999998 999987 89898
|
|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=315.51 Aligned_cols=314 Identities=21% Similarity=0.274 Sum_probs=218.9
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC---------------------CCCccEEEeccCChhhhCCcccCCC---CceEEeC
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA---------------------ADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCS 89 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~---------------------~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s 89 (1176)
+.+.+|+.+ ..+..++|||+... ..++++|||||+|.||++||+.++. ..|||++
T Consensus 11 eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~ 90 (422)
T TIGR00649 11 EIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGT 90 (422)
T ss_pred ccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeC
Confidence 456778888 68889999998421 2478999999999999999998653 3689999
Q ss_pred HHHHHHHHHhhc---cC-CCceEEeCCCceEEEC-CEEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccc
Q 001045 90 EITSRLLSQILN---IN-PKFIYPLPIKIPVLID-GCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTM 163 (1176)
Q Consensus 90 ~~T~~ll~~~l~---~~-~~~i~~l~~~~~~~i~-~~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~ 163 (1176)
+.|..++...+. +. ...+++++++++++++ +++|++++++| +|||++|+|++++ ++++|||||++....
T Consensus 91 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~-----~~ivytGD~~~~~~~ 165 (422)
T TIGR00649 91 PLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL-----GYIVYTGDFKFDNTP 165 (422)
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC-----cEEEECCCcCCCCCc
Confidence 999999987653 11 2247789999999996 59999999999 8999999999864 589999999987655
Q ss_pred cch-h----hhhcc--CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHH
Q 001045 164 LLQ-P----VMNEF--AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKI 234 (1176)
Q Consensus 164 ~~~-~----~l~~~--~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ 234 (1176)
... + .+... .++|+||+||||+.+....++++...+.+.+.+++. +++ +++++|+ ++|.|+
T Consensus 166 ~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~--------~~~--viv~~fa~~~~R~~~ 235 (422)
T TIGR00649 166 VIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNA--------KGR--VIVATFASNIHRVQQ 235 (422)
T ss_pred cCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhC--------CCE--EEEEEccccHHHHHH
Confidence 431 1 12221 579999999999975555567777766666655432 556 6888998 999999
Q ss_pred HHHHHHHcCCcEEEccchHH----HHHHhCCCC-CC--cc-----ccCCCCCe-EEEecChH----HH--HhcCC-----
Q 001045 235 LIEIFKKCGRKVCVDSRKME----VLRVLGYGD-SG--VF-----TEDESETD-VHVVGWNE----IM--VERGY----- 290 (1176)
Q Consensus 235 ll~ia~~~g~~I~vdg~~~~----il~~lg~~~-~~--~~-----t~d~~~~~-I~v~~~~~----~~--~~~g~----- 290 (1176)
++++|++++++|+++|+.+. ++..+|+.. +. .+ ...+.+.. +.+++.+. .+ ...+.
T Consensus 236 i~~~a~~~~r~v~v~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~vii~tg~~g~~~~~l~~~~~~~~~~i~ 315 (422)
T TIGR00649 236 LIQIARKQGRKFAVYGRSMEHLFGIARRLGLIKNPHNNFISLKEVNNSPDENYLIITTGSQGEPYAALTRIANNEHEQIR 315 (422)
T ss_pred HHHHHHHhCCEEEEECccHHHHHHHHHHcCCccCCccceeCHHHHhcCCcccEEEEEeCCCCcHHHHHHHHhCCCCCcEE
Confidence 99999999999999986553 334455431 11 11 11111223 44455551 11 11111
Q ss_pred ---CceEEEEeccceeec-ccCc--ee-eeccCCeeEE-EEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHH
Q 001045 291 ---DKVVGFVPTGWTYEV-KRNK--FA-VRSKDAFEIH-LVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHA 362 (1176)
Q Consensus 291 ---~~~v~i~ptGw~~~~-~~~~--~~-v~~~~~~~v~-~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~ 362 (1176)
...+.+..++|.... .... .. ...+.+++++ .+|+||||+.+||+.|++.++|+++||||| |+
T Consensus 316 l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHg---------e~ 386 (422)
T TIGR00649 316 IRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHG---------EY 386 (422)
T ss_pred eCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEecCC---------cH
Confidence 123444434444322 1000 00 0122344443 489999999999999999999999999999 88
Q ss_pred HHHHHHHHHH
Q 001045 363 NKMRKYFAGL 372 (1176)
Q Consensus 363 ~~m~k~f~~l 372 (1176)
+++.+|.+-+
T Consensus 387 ~~~~~~~~~a 396 (422)
T TIGR00649 387 RMLINHTKLA 396 (422)
T ss_pred HHHHHHHHHH
Confidence 8888777644
|
Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases |
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=313.53 Aligned_cols=318 Identities=23% Similarity=0.309 Sum_probs=232.6
Q ss_pred CCCCCCeeE-eCCccEEEecCCcCC------------CCccEEEeccCChhhhCCcccCCC---CceEEeCHHHHHHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYAA------------DFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~~------------~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~~ll~~ 98 (1176)
+.+.+|..+ ..+..+++||+-... +.+|++||||+|.||+|+||.+.. .++||||+.|+++++.
T Consensus 11 evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~ 90 (427)
T COG1236 11 EVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKV 90 (427)
T ss_pred CcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHH
Confidence 456778888 677899999984332 137999999999999999998544 4799999999999997
Q ss_pred hhc----cC----------------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 99 ILN----IN----------------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 99 ~l~----~~----------------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
.+. .. ...++++++++++++++++|++++|||++||++|.++..+ .+|+||||++
T Consensus 91 ~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~~-----~~ilytGD~~ 165 (427)
T COG1236 91 LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDG-----GRILYTGDVK 165 (427)
T ss_pred HHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeCC-----ceEEEEeccC
Confidence 762 11 1246789999999999999999999999999999999865 5899999999
Q ss_pred CcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHH
Q 001045 159 FCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEI 238 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~i 238 (1176)
...+.+..++-.. ..+|+||+|+||++ ..+|++.+..+.+++.+++.+.+ ||. +++|+|++||.|+++.+
T Consensus 166 ~~~~~l~~~a~~~-~~~DvLI~EsTYg~--~~~~~r~~~e~~f~~~v~~~l~~-----GG~--vlipafa~graQEll~~ 235 (427)
T COG1236 166 RRKDRLLNGAELP-PCIDVLIVESTYGD--RLHPNRDEVERRFIESVKAALER-----GGT--VLIPAFALGRAQELLLI 235 (427)
T ss_pred CCcCCCCCccccC-CCCcEEEEecccCC--ccCCCHHHHHHHHHHHHHHHHhC-----CCE--EEEecccccHHHHHHHH
Confidence 8877766655111 22699999999999 46899999999999999999876 677 79999999999999999
Q ss_pred HHHcC----CcEEEccchHHHHHHh-----CCCCCCc-------c----------ccCC-CCCeEEEecCh--------H
Q 001045 239 FKKCG----RKVCVDSRKMEVLRVL-----GYGDSGV-------F----------TEDE-SETDVHVVGWN--------E 283 (1176)
Q Consensus 239 a~~~g----~~I~vdg~~~~il~~l-----g~~~~~~-------~----------t~d~-~~~~I~v~~~~--------~ 283 (1176)
++.++ .||++|+...+++..+ ++..... + .... ....+++...+ .
T Consensus 236 L~~~~~~~~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~ 315 (427)
T COG1236 236 LRELGFAGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRY 315 (427)
T ss_pred HHHHhccCCCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhhcccccchhhhhhhhccCCceEEEEecccccCCcHHH
Confidence 99988 8999999887665432 1111100 0 0000 11123333222 1
Q ss_pred HHHhcCCCceEEEEeccceeecccCc--------ee---eeccCCeeEEEEeecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 001045 284 IMVERGYDKVVGFVPTGWTYEVKRNK--------FA---VRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGM 352 (1176)
Q Consensus 284 ~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~---v~~~~~~~v~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~ 352 (1176)
........+...+..+|++...+.++ +. ...+.+.+++.+-+|+||+..||.+||+.+.|++|+.+||.
T Consensus 316 ~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~~~Hg~ 395 (427)
T COG1236 316 YLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGE 395 (427)
T ss_pred HHHHHhcCCcceEEEcccccCCcchhHHhcCCcEEeecceeecccceEEEeccccccCcHHHHHHHhcCCCceEEEEeCC
Confidence 11111122223344577776654322 11 12345567888999999999999999999999999999994
Q ss_pred CCCcCchHHHHHHHHHHHHHHHHh
Q 001045 353 DIEKLDSKHANKMRKYFAGLVDEM 376 (1176)
Q Consensus 353 ~~e~~~~~E~~~m~k~f~~l~~~~ 376 (1176)
. ..+...++.++.+.
T Consensus 396 ~---------~~~~~~~~~~~~e~ 410 (427)
T COG1236 396 P---------EYGAALRARLLEEL 410 (427)
T ss_pred c---------hhhhHHHHHHHHhh
Confidence 3 33344555555553
|
|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=273.24 Aligned_cols=304 Identities=15% Similarity=0.198 Sum_probs=221.2
Q ss_pred CCCCCCeeE-eCCccEEEecC---------CcC-----------CCCccEEEeccCChhhhCCcccC----CCCceEEeC
Q 001045 35 PRTFPPSKH-VPNTRFLIDAF---------RYA-----------ADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCS 89 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~---------~~~-----------~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s 89 (1176)
..+.+|+++ |.|.++.+||+ |++ .+-++.|+|||+|.||+|+||+. .+++|||++
T Consensus 14 dvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt 93 (501)
T KOG1136|consen 14 DVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMT 93 (501)
T ss_pred ccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEe
Confidence 457789999 99999999997 111 15689999999999999999985 348999999
Q ss_pred HHHHHHHHHhhc------cC----------------CCceEEeCCCceEEEC-CEEEEEEecCCCcCceEEEEEEcCCCC
Q 001045 90 EITSRLLSQILN------IN----------------PKFIYPLPIKIPVLID-GCEVVLVGANHCPGAVQFLFKVPGRNG 146 (1176)
Q Consensus 90 ~~T~~ll~~~l~------~~----------------~~~i~~l~~~~~~~i~-~~~Vt~~~a~H~pGS~~flie~~~~~G 146 (1176)
.+|+++....+. ++ .+.+.++...+++.++ ++.|+++-|||+.|++||.+...+
T Consensus 94 ~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd--- 170 (501)
T KOG1136|consen 94 YPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGD--- 170 (501)
T ss_pred cchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecc---
Confidence 999998776541 11 1236788889999985 799999999999999999999865
Q ss_pred cccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEec
Q 001045 147 GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVAT 226 (1176)
Q Consensus 147 ~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~ 226 (1176)
.+|+||||+...++....+++..-.++|+||.|+||+... ..++...++++.+.+.+...+ ||+ ++||.
T Consensus 171 --~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYatti--Rdskr~rERdFLk~VhecVa~-----GGk--vlIPv 239 (501)
T KOG1136|consen 171 --QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTI--RDSKRCRERDFLKKVHECVAR-----GGK--VLIPV 239 (501)
T ss_pred --eeEEEecCccCCcccccchhhhccccCceEEeeccceeee--ccccchhHHHHHHHHHHHHhc-----CCe--EEEEe
Confidence 6999999999999988888766668999999999999742 344455566788888887666 788 78999
Q ss_pred cccchHHHHHHHHHHc------CCcEEEc-cchH---HHHHHhC-CCC----CCccccCC----------------CCCe
Q 001045 227 YVIGKEKILIEIFKKC------GRKVCVD-SRKM---EVLRVLG-YGD----SGVFTEDE----------------SETD 275 (1176)
Q Consensus 227 ~slGR~q~ll~ia~~~------g~~I~vd-g~~~---~il~~lg-~~~----~~~~t~d~----------------~~~~ 275 (1176)
|++||+|++.-++..+ ..||++. |..- ..|..+. +.. ..++..+. ....
T Consensus 240 FALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~~~~~pGp~ 319 (501)
T KOG1136|consen 240 FALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRSYIEAPGPM 319 (501)
T ss_pred eecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhhhhhcCCCCE
Confidence 9999999998888654 5788885 3322 1222221 110 01111111 1112
Q ss_pred EEEecCh--------HHHHhcCCCceEEEEeccceeecccCc--------eee---eccCCeeEEEEeecCCCCHHHHHH
Q 001045 276 VHVVGWN--------EIMVERGYDKVVGFVPTGWTYEVKRNK--------FAV---RSKDAFEIHLVPYSEHSNYDELRE 336 (1176)
Q Consensus 276 I~v~~~~--------~~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~v---~~~~~~~v~~i~~SgHAs~~EL~~ 336 (1176)
+.....+ .++.++.+++...++.+||....+-|. ..+ .....+.++.+.||.||+...+.+
T Consensus 320 VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm~ 399 (501)
T KOG1136|consen 320 VLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQ 399 (501)
T ss_pred EEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccCchhHHH
Confidence 2222111 345555555544455688887654221 111 123446778899999999999999
Q ss_pred HHHHcCCCEEEEEecC
Q 001045 337 YVKFLKPKRVIPTVGM 352 (1176)
Q Consensus 337 ~V~~lrPk~VIPvHG~ 352 (1176)
+++...|++|+.|||.
T Consensus 400 li~~csPknVmlVHGE 415 (501)
T KOG1136|consen 400 LIKQCSPKNVMLVHGE 415 (501)
T ss_pred HHHhcCcceEEEEecc
Confidence 9999999999999993
|
|
| >cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=262.95 Aligned_cols=169 Identities=23% Similarity=0.270 Sum_probs=136.6
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
++||||++.....+ +..|++|+||||+|||+|. + ++|||+|+++|.. +. +... ..++|||
T Consensus 1 ~~pmla~~~~~~~~------~~~~~~e~K~DG~R~~~~~--~---~~~SR~g~~~t~~-~~----~~~~----l~~~ilD 60 (174)
T cd07896 1 PELLLAKTYDEGED------ISGYLVSEKLDGVRAYWDG--K---QLLSRSGKPIAAP-AW----FTAG----LPPFPLD 60 (174)
T ss_pred CccccccccccCCC------hHHeeechhhceEEEEEec--c---EEEecCCcCCCCC-HH----HHhh----CCCCccC
Confidence 57999998875543 4689999999999999973 2 9999999999976 22 2221 2349999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
||+|+|+ .||+.+++|.++.... .....+++|++||||+ .+.||.+|+++|++++....++.+
T Consensus 61 GElv~~~-------~~f~~l~~~~~~~~~~----~~~~~~~~f~vFDil~------~~~p~~eR~~~L~~~i~~~~~~~~ 123 (174)
T cd07896 61 GELWIGR-------GQFEQTSSIVRSKKPD----DEDWRKVKFMVFDLPS------AKGPFEERLERLKNLLEKIPNPHI 123 (174)
T ss_pred ceEEcCC-------CCHHHHHHHHhcCCCC----hhhcccceEEEEeCCC------CCCCHHHHHHHHHHHHHhCCCCcE
Confidence 9999975 2999999997654321 1235689999999999 678999999999999932225678
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+++...+ .+.+++.++++++++.|+||||+|+++ ++|++| |+.+|
T Consensus 124 ~~~~~~~~----------~~~~~i~~~~~~~~~~g~EGlv~K~~d--s~Y~~g-R~~~w 169 (174)
T cd07896 124 KIVPQIPV----------KSNEALDQYLDEVVAAGGEGLMLRRPD--APYETG-RSDNL 169 (174)
T ss_pred EEEeeeee----------CCHHHHHHHHHHHHhcCCCeEEEecCC--CcccCC-cCCCc
Confidence 88888765 467899999999999999999999987 999988 78888
|
The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me |
| >PHA00454 ATP-dependent DNA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=280.69 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=150.0
Q ss_pred cCCCCcccCC--hhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHH------HhhcC--
Q 001045 959 KPMLAKITNG--VPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISII------NEFCK-- 1028 (1176)
Q Consensus 959 ~PMLA~~~~~--~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l------~~~~~-- 1028 (1176)
+||+|...+. +.+++++++ .|++|+||||+|||+|+.+++.|++|||||++ ||++.... .+.+.
T Consensus 7 ~~~~~~~~~~~~i~~~~~~~g--~~~~E~K~DG~R~~~~~~~~~~v~l~SR~g~~----~p~l~~~~~~~~~~~~~~~~~ 80 (315)
T PHA00454 7 NPFRAVDFNESAIEKALEKAG--YLIADVKYDGVRGNIVVDNTADHGWLSREGKT----IPALEHLNGFDRRWAKLLNDD 80 (315)
T ss_pred CccccccCCHHHHHHHHHhCC--cEEEEEccceEEEEEEEcCCCeEEEEeCCCCc----ccchhhhhhhhhhhhhhhhhh
Confidence 5889887765 888888874 89999999999999999533359999999985 57665443 22211
Q ss_pred --CCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC----Cccc---ccCCHH
Q 001045 1029 --PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN----GEQL---LGYTLR 1099 (1176)
Q Consensus 1029 --~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln----G~~L---l~~Pl~ 1099 (1176)
..+.++|||||+|+.+ .+|+.+++|.++... +.......++.|++||||++| |+++ ..+||.
T Consensus 81 ~~~l~~~~vLDGElv~~~-------~~f~~~~~~l~~k~~--~~~~~~~~~v~~~vFDll~l~~~~~g~~l~~l~~~pl~ 151 (315)
T PHA00454 81 RCIFPDGFMLDGELMVKG-------VDFNTGSGLLRRKWK--VLFELHLKKLHVVVYDVTPLDVLESGEDYDVMSLLMYE 151 (315)
T ss_pred hhcCCCCeEEEEEEEecC-------CCHHHHHHHhccCcc--chhhhccCceEEEEEEeeEeccccCCccccccccccHH
Confidence 1246899999999963 489999999764332 112234678999999999999 6665 789999
Q ss_pred HHHHHHHHhhcccCCC-cEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1100 QRRKYLKDLFYDEKMG-YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1100 eRr~lL~~~~~~~~~~-~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+||++|++++ ...+. .+++++++.+ .+.++++++|+++++.|+||||+|+++ |+|+||+|+.+|
T Consensus 152 ~Rr~~L~~l~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGiv~K~~d--s~Y~~Grr~~~~ 216 (315)
T PHA00454 152 HVRAMVPLLM-EYFPEIDWFLSESYEV----------YDMESLQELYEKKRAEGHEGLVVKDPS--LIYRRGKKSGWW 216 (315)
T ss_pred HHHHHHHHHH-hhCCCcceEeeceEEc----------CCHHHHHHHHHHHHhCCCceEEEeCCC--CCCCCCCccCcE
Confidence 9999999998 33332 4788888764 468999999999999999999999998 999999998765
|
|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=277.98 Aligned_cols=335 Identities=18% Similarity=0.199 Sum_probs=246.4
Q ss_pred CCCCCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCCC----CceEEeCHHHH
Q 001045 34 IPRTFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSWS----KGIIFCSEITS 93 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~~----~~pIY~s~~T~ 93 (1176)
.+.+++|..+ ..|..+++||+-++ .+.++.++|||+|.||++.||+... .+.+|++..|+
T Consensus 23 ~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~Tk 102 (668)
T KOG1137|consen 23 NEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTK 102 (668)
T ss_pred cccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchH
Confidence 3567888888 89999999998322 1578999999999999999999764 68999999999
Q ss_pred HHHHHhhc-------cC--------------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEE
Q 001045 94 RLLSQILN-------IN--------------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYV 152 (1176)
Q Consensus 94 ~ll~~~l~-------~~--------------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~Il 152 (1176)
++.+..+. +. ...+.++++.+.+++.++++.++.|||+.|+|||.++..+ -+|+
T Consensus 103 Ai~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~veiag-----v~lL 177 (668)
T KOG1137|consen 103 AIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEIAG-----VRLL 177 (668)
T ss_pred HHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeeece-----EEEE
Confidence 99997762 00 1247788999999999999999999999999999999965 7999
Q ss_pred EECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchH
Q 001045 153 HTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232 (1176)
Q Consensus 153 YTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~ 232 (1176)
|||||....++....+..+-.++|+||.|+||+. ..|.++++.+..+..+|..+..+ ||| +++|+|++||+
T Consensus 178 yTGd~sreeDrhl~aae~P~~~~dvli~estygv--~~h~~r~~re~rlt~vIh~~v~r-----GGR--~L~PvFAlgrA 248 (668)
T KOG1137|consen 178 YTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV--QIHEPREEREGRLTWVIHSTVPR-----GGR--VLIPVFALGRA 248 (668)
T ss_pred eccccchhhcccccchhCCCCCccEEEEEeeeeE--EecCchHHhhhhhhhhHHhhccC-----CCc--eEeeeeecchH
Confidence 9999988777655444223368999999999997 45788999999999999999877 799 79999999999
Q ss_pred HHHHHHHHHc--------CCcEEEccchH----HHHHHhC------CC----CCCc--c-------cc----CCCCCeEE
Q 001045 233 KILIEIFKKC--------GRKVCVDSRKM----EVLRVLG------YG----DSGV--F-------TE----DESETDVH 277 (1176)
Q Consensus 233 q~ll~ia~~~--------g~~I~vdg~~~----~il~~lg------~~----~~~~--~-------t~----d~~~~~I~ 277 (1176)
||++.++.++ ++||++..... .+++.+- ++ ..+. | +- |.....+.
T Consensus 249 qELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~vv~ 328 (668)
T KOG1137|consen 249 QELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSVVM 328 (668)
T ss_pred HHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCceeE
Confidence 9999999775 47899864322 2332210 00 0000 0 00 11111223
Q ss_pred EecCh-------HHHHhcCCCceEEEEeccceeecccCcee------e------eccCCeeEEEEeecCCCCHHHHHHHH
Q 001045 278 VVGWN-------EIMVERGYDKVVGFVPTGWTYEVKRNKFA------V------RSKDAFEIHLVPYSEHSNYDELREYV 338 (1176)
Q Consensus 278 v~~~~-------~~~~~~g~~~~v~i~ptGw~~~~~~~~~~------v------~~~~~~~v~~i~~SgHAs~~EL~~~V 338 (1176)
+++.. +.+..+-.+...++..+||+.+.+..+.. + ....++.|..+.||.|.+|-+-.+|+
T Consensus 329 aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi 408 (668)
T KOG1137|consen 329 ASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFI 408 (668)
T ss_pred eCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHH
Confidence 33221 12222334555555669999876432110 0 13346789999999999999999999
Q ss_pred HHcCCCEEEEEecCCCCcCchHHHHHHHHHHHHHHHHhhhhHHhhhhccccCc
Q 001045 339 KFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTS 391 (1176)
Q Consensus 339 ~~lrPk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~~~~~~k~~fl~~~~~~~~ 391 (1176)
+.+.|+++|.||| |+..|......+...-.+.+--+.+|.+++|
T Consensus 409 ~~i~~~~lilVHG---------E~neM~rLKs~L~~~f~d~kv~i~v~tprn~ 452 (668)
T KOG1137|consen 409 ADITPPHLILVHG---------EANEMMRLKSALEAAFRDGKVPIDVSTPRNC 452 (668)
T ss_pred HHhCCCeEEEEec---------ccchhHHHHHHHHHHhccCCCcceecCCccc
Confidence 9999999999999 6777777666666554444445666667766
|
|
| >cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=252.78 Aligned_cols=173 Identities=25% Similarity=0.297 Sum_probs=136.4
Q ss_pred cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEE
Q 001045 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038 (1176)
Q Consensus 959 ~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDG 1038 (1176)
.|||+.+.....+ ..+.+.+|++|+||||+|||+|+. ++.+++|||+|+++|..||++.... +.....++||||
T Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~e~K~DG~R~~~~~~-~~~v~~~sR~g~~~~~~~~~~~~~~---~~~~~~~~ilDG 74 (182)
T cd06846 1 PQLLNPILEEALS--EYDEQDEYYVQEKYDGKRALIVAL-NGGVFAISRTGLEVPLPSILIPGRE---LLTLKPGFILDG 74 (182)
T ss_pred CCccchhhhHHHh--hccccCcEEEEEccCceEEEEEEc-CCeEEEEeCCCCEEecccccccchH---HhccCCCeeEEE
Confidence 3788887665433 256678999999999999999994 7899999999999999999886411 112457899999
Q ss_pred EEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCC--Cc
Q 001045 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM--GY 1116 (1176)
Q Consensus 1039 ElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~--~~ 1116 (1176)
|||+|+.. + ...+++|++||||++||.+++++||.+|+++|++++ ...+ ..
T Consensus 75 Elv~~~~~-------~-------------------~~~~~~~~~FDil~~~~~~~~~~p~~eR~~~L~~~v-~~~~~~~~ 127 (182)
T cd06846 75 ELVVENRE-------V-------------------ANPKPTYYAFDVVPLSGVGLRDLPYSDRFAYLKSLL-KEFEGLDP 127 (182)
T ss_pred EEEeccCC-------C-------------------ccceeEEEEEEEEEECCCccccCCHHHHHHHHHHHh-hhhccCCc
Confidence 99998642 1 123699999999999999999999999999999999 3332 23
Q ss_pred EEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCc--ccCCCCCCC
Q 001045 1117 FQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGY--SPSKRSDSW 1176 (1176)
Q Consensus 1117 i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y--~pGkRs~~W 1176 (1176)
+.+.....+. ...++++++|+++++.|+||||+|.++ ++| .+| |+.+|
T Consensus 128 ~~i~~~~~~~---------~~~~~~~~~~~~~~~~g~EGvi~K~~~--s~Y~~~~g-r~~~w 177 (182)
T cd06846 128 VKLVPLENAP---------SYDETLDDLLEKLKKKGKEGLVFKHPD--APYKGRPG-SSGNQ 177 (182)
T ss_pred eeEEEeeccc---------ccchHHHHHHHHhhhcCCceEEEEcCC--CCccccCC-CCCce
Confidence 4444333221 122348999999999999999999998 999 888 88888
|
ATP-dependent polynucleotide ligases catalyze the phosphodiester bond formation of nicked nucleic acid substrates using ATP as a cofactor in a three step reaction mechanism. This family includes ATP-dependent DNA and RNA ligases. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent DNA ligases have a highly modular architecture, consisting of a unique arrangement of two or more discrete domains, including a DNA-binding domain, an adenylation or nucleotidyltransferase (NTase) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many active site residues. Together with the C-terminal OB-fold domain, it comprises a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core contains six conserved seq |
| >PRK09125 DNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=265.82 Aligned_cols=169 Identities=25% Similarity=0.343 Sum_probs=135.5
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
.+||||..... .+.+.+|++|+||||+|||+ + .+++|||+|+++|. |+.. .. ...++|||
T Consensus 28 ~~~~LA~~~~~------~~~~~~~~~E~K~DG~R~~~----~-~v~l~SR~g~~it~--p~~~---~~----~~~~~vLD 87 (282)
T PRK09125 28 PDLQLATVYDK------GQDISGYLVSEKLDGVRAYW----D-GKQLLTRQGNPIAA--PAWF---TA----GFPPFPLD 87 (282)
T ss_pred CCceechhccc------CCChhhEEEEeeeeeEeEEE----C-CeEEEcCCCCcCCC--chhH---Hh----cCCCccEe
Confidence 57999987642 22456899999999999974 2 38999999999998 4432 12 12389999
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
||+|+++ .+|+.+++|.+..... .....+++|++||||++|| ||.+||++|++++.....+.+
T Consensus 88 GElv~~~-------~~F~~l~~r~~~k~~~----~~~~~~v~~~vFDll~~~g------pl~eRr~~L~~li~~~~~~~i 150 (282)
T PRK09125 88 GELWAGR-------GQFEAISSIVRDKTPD----DAAWRKVRFMVFDLPDAPG------DFEERLAVLKKLLAKLPSPYI 150 (282)
T ss_pred EEEEeCC-------CCHHHHHHHHccCCcc----hhhhcccEEEEEEcCCCCC------CHHHHHHHHHHHHhhCCCCcE
Confidence 9999853 3799999997654322 1223589999999999987 999999999999943235678
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
++++.+.+ .+.++++++|+++++.|+||||+|+++ |+|++| |+.+|
T Consensus 151 ~~~~~~~~----------~~~~~~~~~~~~~~~~G~EGiV~K~~d--s~Y~~G-Rs~~w 196 (282)
T PRK09125 151 KIIEQIRV----------RSEAALQQFLDQIVAAGGEGLMLHRPD--APYEAG-RSDDL 196 (282)
T ss_pred EEEeEEEc----------CCHHHHHHHHHHHHHcCCCEEEEeCCC--CCCcCC-CCCCc
Confidence 88888764 468999999999999999999999987 999999 88888
|
|
| >cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=231.00 Aligned_cols=157 Identities=23% Similarity=0.280 Sum_probs=124.7
Q ss_pred HhccCceEEEEEecceeEEEEEEeeC-CeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKLVD-GTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~~~-g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
..+...+|++|+||||+|+|+|+. + +.|.+|||+++.++..+|++.+... ......++|||||+|+++.. +
T Consensus 36 ~~~~~~~y~ve~K~DG~R~~l~~~-~~~~v~l~sR~~~~~~~~~~~~~~~~~--~~~~~~~~ilDGElv~~~~~--~--- 107 (215)
T cd07895 36 ELLKQNDYFVCEKSDGVRYLLLIT-GRGEVYLIDRKNDVFKVPGLFFPRRKN--LEPHHQGTLLDGELVIDKVP--G--- 107 (215)
T ss_pred HHHhhCCeEEEEeEcCeEEEEEEe-cCCcEEEEeCCCCeEEeccccCCCccc--ccccccCeeeEEEEEEEcCC--C---
Confidence 335678899999999999999994 6 8999999999999999988754211 12246799999999998642 1
Q ss_pred ChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC--------------cEE
Q 001045 1053 SFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG--------------YFQ 1118 (1176)
Q Consensus 1053 pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~--------------~i~ 1118 (1176)
..+++|++||||++||+++++.||.+|+++|++++...... .+.
T Consensus 108 ----------------------~~~~~~~vFDiL~~~g~~l~~~pl~~R~~~L~~~i~~~~~~~~~~~~~~~~~~~~~i~ 165 (215)
T cd07895 108 ----------------------KKRPRYLIFDILAFNGQSVTEKPLSERLKYIKKEVIEPRNELLKKGPIDKAKEPFSVR 165 (215)
T ss_pred ----------------------ceEEEEEEEEEEEECCcCccCCCHHHHHHHHHHhchhHHHHhhhcChhhcCCCCeEEE
Confidence 12699999999999999999999999999999998322111 111
Q ss_pred EeEEEEEcCCCCCCccccCHHHHHHHHHHH---HhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1119 YAKEMTVEGDDNCLTSDVSLSKINNFLEEA---LHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1119 ~~~~~~v~~~~~~~~~~~~~eei~~~~~~a---i~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
..+. ...+++.++|+.+ +.+|.||||+|..+ ++|.+| |+..|
T Consensus 166 ~k~~-------------~~~~~~~~~~~~~~~~~~~~~EGlIfk~~~--~~Y~~G-r~~~~ 210 (215)
T cd07895 166 LKDF-------------FPLYKIEKLFEKIIPKLPHENDGLIFTPND--EPYVPG-TDKNL 210 (215)
T ss_pred ecce-------------EeHHhHHHHHHhccccCCCCCCCEEEccCC--CCccCc-cCCcc
Confidence 1111 2346888898888 59999999999998 999999 99988
|
RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues. |
| >TIGR02776 NHEJ_ligase_prk DNA ligase D | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-23 Score=249.39 Aligned_cols=139 Identities=29% Similarity=0.531 Sum_probs=117.3
Q ss_pred cCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEe
Q 001045 1006 SRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDI 1085 (1176)
Q Consensus 1006 SR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDi 1085 (1176)
||||+|+|.+||+|++++... ...+||||||||+||.+ ...+||.|+++.+.. ...++||++|||
T Consensus 1 SRng~d~T~~fPel~~~~~~l---~~~~~ILDGElVvld~~---G~~~F~~Lq~~~~~~---------~~~pv~~~vFDl 65 (552)
T TIGR02776 1 TRNGHDWTKRFPEIVKALALL---KLLPAWIDGEIVVLDER---GRADFAALQNALSAG---------ASRPLTYYAFDL 65 (552)
T ss_pred CCCcCcchhhhHHHHHHHhhC---CCCCEEEEEEEEEECCC---CCCCHHHHHHHHHhc---------ccCceEEEEEec
Confidence 899999999999999988753 46799999999999963 346899999986532 245899999999
Q ss_pred eeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCC
Q 001045 1086 MFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDA 1165 (1176)
Q Consensus 1086 L~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s 1165 (1176)
||+||++|+++||.+||++|++++.....+.+.+++++. ++.+++|++++++|+||||+|+++ |
T Consensus 66 L~l~G~dL~~~Pl~eRr~~L~~ll~~~~~~~i~~~~~~~--------------~~~~~~~~~a~~~G~EGIV~K~~d--S 129 (552)
T TIGR02776 66 LFLSGEDLRDLPLEERKKRLKQLLKAQDEPAIRYSDHFE--------------SDGDALLESACRLGLEGVVSKRLD--S 129 (552)
T ss_pred cccCCcccccCCHHHHHHHHHHHhhhcCCCcEEEeeeec--------------ccHHHHHHHHHHCCCceEEEeCCC--C
Confidence 999999999999999999999999432234577776632 233489999999999999999998 9
Q ss_pred CcccCCCCCCC
Q 001045 1166 GYSPSKRSDSW 1176 (1176)
Q Consensus 1166 ~Y~pGkRs~~W 1176 (1176)
+|+|| ||.+|
T Consensus 130 ~Y~~G-Rs~~W 139 (552)
T TIGR02776 130 PYRSG-RSKDW 139 (552)
T ss_pred CCCCC-CCcch
Confidence 99999 99999
|
Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku. |
| >KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=192.74 Aligned_cols=333 Identities=21% Similarity=0.347 Sum_probs=235.9
Q ss_pred ccccCCCCCCCcccccccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCc
Q 001045 690 TLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHE 769 (1176)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~ 769 (1176)
++.++-+..+.|.- .--.|..+.+++..++.......|+++++.+++.- ..+.+ +||.+.-|.-..+
T Consensus 139 ~~rS~R~~~~~~~S-------kFN~F~ef~kiCS~L~~~p~~~~Kt~VI~~LL~kd-NFDGD-----L~LWL~FLIRESD 205 (482)
T KOG4437|consen 139 PKRSLRSSKCDPRS-------KFNLFREFRKLCSMLADNPSYNTKTQVIQDLLRKD-NFDGD-----LYLWLKFLIRESD 205 (482)
T ss_pred chhccccccCCccc-------cchHHHHHHHHHHHHHhCcCccchhHHHHHHHhcc-CCCcc-----hhhhhhhhhcccc
Confidence 34555555555422 24578999999999999999999999999998872 12223 4444555556778
Q ss_pred ccccccchhhHHHHHHHHhCCChHHHHHHHHhc-CChHHHHHHHHhhccc--cCCCCCCcHHHHHHHHHHhhhhcCCCch
Q 001045 770 NIELNIGGSLVTSAIEEACGTNRSKIRDMYNRL-GDLGDVAQECRQTQAL--LAPPPPLLIKDVYSMLCKISVQTGSGST 846 (1176)
Q Consensus 770 ~~elgige~~L~kal~~~~g~~~~~i~~~~~~~-GDlG~va~~~~~~q~~--l~~~~~LTi~eV~~~L~~IA~~~g~~s~ 846 (1176)
.|.|+|....|++.+++++.+.+......|-.. -|. |-.+.-.|.. .....-+||.+|++.|.+|+..+..
T Consensus 206 ~R~YNl~DkKLI~lfsKiLn~~~~~~~~~Y~~~S~~~---~i~i~~~~~K~~~~~K~~~siQ~~D~~L~rLSKi~~~--- 279 (482)
T KOG4437|consen 206 KRVYNLNDKKLIKLFSKILNCNPDDMARDYEQGSVSE---TIRVFFEQSKSFPPAKSLLTIQEVDEFLLRLSKLTKE--- 279 (482)
T ss_pred cccccccHHHHHHHHHHHHccChHHHHHHHHhccchh---hhhhhHhhccCCCCcccceeHHHHHHHHHHHhcccch---
Confidence 899999999999999999999876655555432 222 2222222221 2234569999999999999988764
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHh
Q 001045 847 ARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYN 926 (1176)
Q Consensus 847 ~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~ 926 (1176)
...++.|+....+|+..|.+.|+|+|-++|......+.||++++ +.+.++|.
T Consensus 280 D~~~~~L~~~A~R~~~~~L~~iIRLIr~~L~~~s~A~~iL~~~~----------------------------P~A~E~F~ 331 (482)
T KOG4437|consen 280 DEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALD----------------------------PNAYEAFK 331 (482)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhccCCChhHHHhccC----------------------------CCcHHHHH
Confidence 34577899999999999999999999999999999999999863 12222222
Q ss_pred hCCChHHHHHHHh--------ccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEee
Q 001045 927 ILPSLDLLIPSLM--------NKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLV 998 (1176)
Q Consensus 927 ~~pdl~~v~~~L~--------~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~ 998 (1176)
..+|+.|++..+ ++|.+...+ ..-....|.+|||+..+++++-..++..+.. .-|.||||+|.|+|. +
T Consensus 332 -S~~L~~ViEr~~~N~~~~~~~~~~~~~~s-~~s~~~s~~Q~~~~~~~~~VE~s~~~~~~~~-~S~~~~D~E~~~~~~-~ 407 (482)
T KOG4437|consen 332 -SRNLQDVVERVLHNAQEVEKEPGQRRALS-VQASLMTPVQPMLAEACKSVEYAMKKCPNGM-FSEIKYDGERVQVHK-N 407 (482)
T ss_pred -hcCHHHHHHHHHHhHHHHhhCcccccccc-chhhhcCCcChhhhhhhhhHHHHhccCCCCc-cccccCCCceeeccC-C
Confidence 123333333222 223221111 1123447899999999999988888776655 479999999999999 5
Q ss_pred CCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccce
Q 001045 999 DGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDI 1078 (1176)
Q Consensus 999 ~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v 1078 (1176)
++.|.+|||--+.. ..+.+.+++.+ ++..+.|+|||....+.++| .++||+.+.-..+... ....+
T Consensus 408 ~D~~S~~S~~~~~~----s~FK~~~P~~~-~~G~~~~~~~~~~~I~~K~~-~P~~~~~~~~~~K~~~--------~~~~~ 473 (482)
T KOG4437|consen 408 GDHFSYFSRLPHKV----AHFKDYIPQAF-PGGHSMILDSEVLLIDNKTG-KPLPFGTLGVHKKAAF--------QDANV 473 (482)
T ss_pred CcchhhhccChHhh----hhhhhcCchhc-CCCccccccccccceecccC-CCCCchhcchhhHHHh--------cCcch
Confidence 88999999976554 33444555554 46789999999999999986 8999999975532110 12358
Q ss_pred EEEEEEeee
Q 001045 1079 CVFVFDIMF 1087 (1176)
Q Consensus 1079 ~~~vFDiL~ 1087 (1176)
|.++||..|
T Consensus 474 ~~~~~~~~~ 482 (482)
T KOG4437|consen 474 CLFVFDCIY 482 (482)
T ss_pred heeecccCC
Confidence 999999765
|
|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=196.97 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=134.3
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCC--------c--CCCCccEEEeccCChhhhCCcccCC---------C
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFR--------Y--AADFSVSYFLSHFHSDHYTGLSPSW---------S 82 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~--------~--~~~~i~avfITHaH~DHiggL~~l~---------~ 82 (1176)
-.||||+++|...|..+|+.+ .++..++|||+. . ...++++|||||+|.||++||+.+. .
T Consensus 3 ~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~ 82 (299)
T TIGR02651 3 TFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKE 82 (299)
T ss_pred EEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCc
Confidence 458999999999999999999 788999999982 1 1246899999999999999998542 1
Q ss_pred CceEEeCHHHHHHHHHhhccC------CCceEEeCCCc-eEEECCEEEEEEecCCCcCceEEEEEEcCC-----------
Q 001045 83 KGIIFCSEITSRLLSQILNIN------PKFIYPLPIKI-PVLIDGCEVVLVGANHCPGAVQFLFKVPGR----------- 144 (1176)
Q Consensus 83 ~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~-~~~i~~~~Vt~~~a~H~pGS~~flie~~~~----------- 144 (1176)
+++||+++.+.+.+...+... .-.+.++..++ .+.+++++|+++++.|...+++|.|+.++.
T Consensus 83 ~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~ 162 (299)
T TIGR02651 83 PLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKE 162 (299)
T ss_pred eEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHH
Confidence 568999999999887654321 11256677777 588999999999999987899999997521
Q ss_pred ------------------------------------CCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCC
Q 001045 145 ------------------------------------NGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPK 188 (1176)
Q Consensus 145 ------------------------------------~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~ 188 (1176)
.| ++++|+||+++.+. ....+.++|+||+||||....
T Consensus 163 ~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g--~~i~y~gDt~~~~~-----~~~~~~~~dlLi~E~~~~~~~ 235 (299)
T TIGR02651 163 LGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKG--RKIAYTGDTRPCEE-----VIEFAKNADLLIHEATFLDED 235 (299)
T ss_pred CCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCC--cEEEEecCCCChHH-----HHHHHcCCCEEEEECCCCchh
Confidence 13 58999999987543 122236899999999998743
Q ss_pred CC--CCChHHHHHHHHHHHHHH
Q 001045 189 FL--FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 189 ~~--~p~~~e~~~~l~~~i~~~ 208 (1176)
.. ....|.+.+++.+++++.
T Consensus 236 ~~~~~~~~H~t~~~a~~~~~~~ 257 (299)
T TIGR02651 236 KKLAKEYGHSTAAQAAEIAKEA 257 (299)
T ss_pred HHHHhhcCCCCHHHHHHHHHHc
Confidence 21 123445555666666654
|
Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN. |
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=195.51 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=133.8
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-eC----CccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC------
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-VP----NTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW------ 81 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-ip----g~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~------ 81 (1176)
-.||||+++|...|.++|+.+ +. +..+++||+.. ...++++|||||.|.||++||+.+.
T Consensus 2 ~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~ 81 (303)
T TIGR02649 2 IFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMS 81 (303)
T ss_pred EEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhc
Confidence 358999999999999999999 53 36799999821 1257999999999999999998632
Q ss_pred ---CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCC--------
Q 001045 82 ---SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-------- 144 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~-------- 144 (1176)
.+++||+++.+.+.+...+.+. ...++.+..++.+..++++|+++++.|...+++|.|+..+.
T Consensus 82 ~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~k 161 (303)
T TIGR02649 82 GIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQA 161 (303)
T ss_pred CCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEccCccceEEEEEeccCCcCCCCHHH
Confidence 2478999999999887654321 12356777788888889999999999977899999987321
Q ss_pred ---------------------------------------CCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCC
Q 001045 145 ---------------------------------------NGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYC 185 (1176)
Q Consensus 145 ---------------------------------------~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~ 185 (1176)
.| .+|+|+||+++... .+....++|+||+||||.
T Consensus 162 l~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g--~~i~y~gDt~~~~~-----~~~~~~~adlLi~Eat~~ 234 (303)
T TIGR02649 162 LKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPG--KALAIFGDTGPCDA-----ALDLAKGVDVMVHEATLD 234 (303)
T ss_pred HHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCC--cEEEEecCCCChHH-----HHHHhcCCCEEEEeccCC
Confidence 23 68999999987433 122237999999999997
Q ss_pred CCCC--CCCChHHHHHHHHHHHHHH
Q 001045 186 NPKF--LFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 186 ~~~~--~~p~~~e~~~~l~~~i~~~ 208 (1176)
+... .....|.+..++.+++++.
T Consensus 235 ~~~~~~a~~~~H~t~~~a~~~a~~~ 259 (303)
T TIGR02649 235 ITMEAKANSRGHSSTRQAATLAREA 259 (303)
T ss_pred hhhHHHHhhcCCCCHHHHHHHHHHc
Confidence 5321 1123455566666666654
|
Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN. |
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=184.41 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=126.4
Q ss_pred cCCCCCCC------------------CCCCCCCCCCeeE-eCCccEEEecCC------cCCCCccEEEeccCChhhhCCc
Q 001045 23 SSPPDSLI------------------FPPIPRTFPPSKH-VPNTRFLIDAFR------YAADFSVSYFLSHFHSDHYTGL 77 (1176)
Q Consensus 23 ~~l~s~~~------------------~p~~~r~~p~~~~-ipg~~~liD~~~------~~~~~i~avfITHaH~DHiggL 77 (1176)
--||||++ .|...|..+++.+ ..+..++||++- ....++++|||||.|.||++||
T Consensus 4 ~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl 83 (250)
T PRK11244 4 TLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGL 83 (250)
T ss_pred EEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccH
Confidence 35788887 8888888888877 788899999982 2236799999999999999999
Q ss_pred ccC-C---CCceEEeCHHHHHHHHHhhccCC-Cce-EEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEE
Q 001045 78 SPS-W---SKGIIFCSEITSRLLSQILNINP-KFI-YPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 78 ~~l-~---~~~pIY~s~~T~~ll~~~l~~~~-~~i-~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~I 151 (1176)
..+ + .+++||+++.+..+.. .+.... ..+ ..+..++++.+++++|+++++.|..++++|+|+.++ +++
T Consensus 84 ~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~~~-----~~i 157 (250)
T PRK11244 84 FPLRWGVGDPIPVYGPPDPEGCDD-LFKHPGILDFSHPLEPFEPFDLGGLQVTPLPLNHSKLTFGYLLETAH-----SRV 157 (250)
T ss_pred HHHHhhcCCceeEEeCCchhhHHH-HhcCccccccccccCCCCCeeECCEEEEEEeeCCCcceeEEEEecCC-----eEE
Confidence 754 2 3578999988754332 222211 112 357788899999999999999998889999999754 699
Q ss_pred EEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 152 VHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 152 lYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
+|+||+......... .+ ...++|+||+|+||..... ....+....++++++++.
T Consensus 158 ~ysgDt~~~~~~~~~-~~-~~~~~Dlli~e~~~~~~~~-~~~~H~~~~~a~~~a~~~ 211 (250)
T PRK11244 158 AYLTDTVGLPEDTLK-FL-RNNQPDLLVLDCSHPPQED-APRNHNDLTTALAIIEVL 211 (250)
T ss_pred EEEcCCCCCCHHHHH-HH-hcCCCCEEEEeCcCCCCCC-CCCCCCCHHHHHHHHHhc
Confidence 999998754332111 11 1158999999999975421 122344445566666544
|
|
| >cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=183.96 Aligned_cols=144 Identities=27% Similarity=0.378 Sum_probs=107.8
Q ss_pred ceEEEEEecceeEEEEEEeeCCeEEEEcCCCc---cCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChH
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD---ETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQ 1055 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~---d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq 1055 (1176)
..|++|+||||.|+|+|+ .+|++.+|||+|. +.|+.+|++.. ..++ ...+++|||||+++.+. ||.
T Consensus 48 ~~~~vEEKlDG~nvri~~-~~G~v~a~TR~G~i~e~~T~~~~eiv~--~~~~-~~~p~~iLdGElvg~~~-------p~v 116 (342)
T cd07894 48 GPVAVEEKMNGYNVRIVR-IGGKVLAFTRGGFICPFTTDRLRDLID--PEFF-DDHPDLVLCGEVVGPEN-------PYV 116 (342)
T ss_pred CCEEEEEeECCcEEEEEE-ECCEEEEEeCCCccCccchhhHhhhch--HHhh-ccCCCEEEEEEEEecCC-------ccc
Confidence 689999999999999999 4889999999975 45899999842 2322 23467999999998651 331
Q ss_pred HHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccc
Q 001045 1056 ELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSD 1135 (1176)
Q Consensus 1056 ~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 1135 (1176)
. .... ...++.|++|||++.|+ ...+|+.+|+++|+++.-.. .....+..+
T Consensus 117 ~------~~~~-------~~~~v~F~vFDI~~~~~--~~~lp~~eR~~lLe~lg~~~----v~~~~~~~~---------- 167 (342)
T cd07894 117 P------GSYP-------EVEDVGFFVFDIRKKNT--GRPLPVEERRELLEKYGLPT----VRLFGEFTA---------- 167 (342)
T ss_pred c------ccCc-------cccccEEEEEeeEEcCC--CCCCCHHHHHHHHHhcCCCC----cceEEEEec----------
Confidence 0 1000 01368999999999885 66789999999999983121 122223332
Q ss_pred cCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1136 VSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1136 ~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
++.+++.++|+++.+.|+||||+|+++
T Consensus 168 ~d~~~l~~~l~~~~~~G~EGVVlK~~~ 194 (342)
T cd07894 168 DEIEELKEIIRELDKEGREGVVLKDPD 194 (342)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeccc
Confidence 357899999999999999999999987
|
RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues. |
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=171.51 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=117.5
Q ss_pred CCCCCCCeeE-eCCccEEEecCC--------cCCCCccEEEeccCChhhhCCcccCC-----CCceEEeCHHHHHHHHHh
Q 001045 34 IPRTFPPSKH-VPNTRFLIDAFR--------YAADFSVSYFLSHFHSDHYTGLSPSW-----SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~~liD~~~--------~~~~~i~avfITHaH~DHiggL~~l~-----~~~pIY~s~~T~~ll~~~ 99 (1176)
..|..+++.+ ..|..++||++. ....++++|||||.|.||++||+.+. .+.+||+++.+.+.+...
T Consensus 31 ~~R~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~ 110 (252)
T PRK02113 31 DNRLRTSALVETEGARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSR 110 (252)
T ss_pred CcceeeEEEEEECCeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhh
Confidence 3677788888 788899999983 12257999999999999999998542 368999999999988765
Q ss_pred hcc----------CCCceEEeCCCceEEECCEEEEEEecCCC-cCceEEEEEEcCCCCcccEEEEECCCCCcccccchhh
Q 001045 100 LNI----------NPKFIYPLPIKIPVLIDGCEVVLVGANHC-PGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPV 168 (1176)
Q Consensus 100 l~~----------~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~-pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~ 168 (1176)
+.. ....++.++.++++++++++|+++++.|. ..+++|.+ + +++|+||+...+.. .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i---~------~i~y~~Dt~~~~~~----~ 177 (252)
T PRK02113 111 MPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI---G------KMAYITDMLTMPEE----E 177 (252)
T ss_pred CCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEecCCCccEEEEEe---C------CEEEccCCCCCCHH----H
Confidence 421 11236778889999999999999999995 45788888 1 69999999754432 1
Q ss_pred hhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 169 MNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 169 l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
+..+.++|+||+|+++..+.. .+...+++.+.++++
T Consensus 178 ~~~~~~~DlLi~e~~~~~~~~----~H~t~~~a~~~~~~~ 213 (252)
T PRK02113 178 YEQLQGIDVLVMNALRIAPHP----THQSLEEALENIKRI 213 (252)
T ss_pred HHHhcCCCEEEEhhhcCCCCC----CcCCHHHHHHHHHHh
Confidence 222379999999998743322 244445566666655
|
|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=167.61 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=116.5
Q ss_pred CCCCCCCCCeeE-eCCccEEEecCC------cCCCCccEEEeccCChhhhCCcccC-C---CCceEEeCHHHHHHHHHhh
Q 001045 32 PPIPRTFPPSKH-VPNTRFLIDAFR------YAADFSVSYFLSHFHSDHYTGLSPS-W---SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 32 p~~~r~~p~~~~-ipg~~~liD~~~------~~~~~i~avfITHaH~DHiggL~~l-~---~~~pIY~s~~T~~ll~~~l 100 (1176)
|...|..+++.+ ..+..++||++- ....++++|||||.|.||++||+.+ + .+++||+++.+..+.. .+
T Consensus 21 ~~~~r~~~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~-~~ 99 (238)
T TIGR03307 21 PDYRRQPCSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDD-LF 99 (238)
T ss_pred ccccCcceEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHH-Hh
Confidence 445566777766 678899999982 2235799999999999999999643 2 3578999998864432 22
Q ss_pred ccC--CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEE
Q 001045 101 NIN--PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAV 178 (1176)
Q Consensus 101 ~~~--~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvL 178 (1176)
... ......+..++++.+++++|+++++.|..++++|.|+.++ ++++|+||+.......... +. ..++|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~~~-----~~i~y~gDt~~~~~~~~~~-~~-~~~~D~l 172 (238)
T TIGR03307 100 KHPGILDFSKPLEAFEPFDLGGLRVTPLPLVHSKLTFGYLLETDG-----QRVAYLTDTAGLPPDTEAF-LK-NHPLDVL 172 (238)
T ss_pred cCcccccccccccCCceEEECCEEEEEEecCCCCcceEEEEecCC-----cEEEEEecCCCCCHHHHHH-Hh-cCCCCEE
Confidence 211 1112347788999999999999999998889999999754 6999999996543321111 11 1379999
Q ss_pred EEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 179 FLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 179 I~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
|+||||...... ...+....++.+.+++.
T Consensus 173 i~e~~~~~~~~~-~~~H~~~~~~~~~~~~~ 201 (238)
T TIGR03307 173 ILDCSHPPQSDA-PRNHNDLTRALAINEQL 201 (238)
T ss_pred EEeCCcCccccC-CCCcCCHHHHHHHHHHc
Confidence 999999743211 12344455666666544
|
This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP. |
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=174.67 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred CCCCCCCeeEe-CCc-cEEEecC--------Cc---------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHH
Q 001045 34 IPRTFPPSKHV-PNT-RFLIDAF--------RY---------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEIT 92 (1176)
Q Consensus 34 ~~r~~p~~~~i-pg~-~~liD~~--------~~---------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T 92 (1176)
+.|..+++.+. .|. .+|||++ +. ...++++|||||.|.||++||+.+.. +++||+++.|
T Consensus 35 ~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~ 114 (302)
T PRK05184 35 KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAV 114 (302)
T ss_pred CcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHH
Confidence 67888888884 454 5899998 21 11369999999999999999987643 6899999999
Q ss_pred HHHHHHhhc---c----CCCceEEeCCCceEEEC---CEEEEEEecCC-------------CcCceEEEEEEcCCCCccc
Q 001045 93 SRLLSQILN---I----NPKFIYPLPIKIPVLID---GCEVVLVGANH-------------CPGAVQFLFKVPGRNGGFE 149 (1176)
Q Consensus 93 ~~ll~~~l~---~----~~~~i~~l~~~~~~~i~---~~~Vt~~~a~H-------------~pGS~~flie~~~~~G~~~ 149 (1176)
.+.+...+. + ..-.++.+..+++++++ +++|+++++.| ...+++|+|+... +| +
T Consensus 115 ~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~-~g--~ 191 (302)
T PRK05184 115 LEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRA-TG--K 191 (302)
T ss_pred HHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecC-CC--c
Confidence 998876421 1 11135677888888886 89999999976 2459999996211 23 6
Q ss_pred EEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 150 RYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 150 ~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
+++|++|...... ..+..+.++|+||+|||+
T Consensus 192 ~~~y~tD~~~~~~----~~~~~~~gaDlli~da~~ 222 (302)
T PRK05184 192 RLFYAPGLAEVTD----ALRARLAGADCVLFDGTL 222 (302)
T ss_pred EEEEECCCCCCCH----HHHHHHhcCCEEEEeCCC
Confidence 8999988632221 122233789999999995
|
|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=171.66 Aligned_cols=210 Identities=16% Similarity=0.132 Sum_probs=135.4
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCC----------cCCCCccEEEeccCChhhhCCcccCC---------C
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFR----------YAADFSVSYFLSHFHSDHYTGLSPSW---------S 82 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~----------~~~~~i~avfITHaH~DHiggL~~l~---------~ 82 (1176)
--||||+++|...|..+++.+ .+|..+++|||. ....++++|||||.|.||+.||+.+. .
T Consensus 5 ~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~ 84 (292)
T COG1234 5 TFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRRE 84 (292)
T ss_pred EEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCC
Confidence 458999999999999999999 799999999982 22247999999999999999998521 1
Q ss_pred CceEEeCHHHHHHHHHhhccCCC------ceEEeCC---------------------CceEEEC------------CEEE
Q 001045 83 KGIIFCSEITSRLLSQILNINPK------FIYPLPI---------------------KIPVLID------------GCEV 123 (1176)
Q Consensus 83 ~~pIY~s~~T~~ll~~~l~~~~~------~i~~l~~---------------------~~~~~i~------------~~~V 123 (1176)
+..||+++..++.+...+..... ..+.+.. .++...+ ++.+
T Consensus 85 ~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~ 164 (292)
T COG1234 85 PLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLI 164 (292)
T ss_pred ceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHH
Confidence 46899999988887765422110 0111110 0000111 4566
Q ss_pred EEEecCCC----cCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCC-CCCh-HHH
Q 001045 124 VLVGANHC----PGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFL-FPLQ-EES 197 (1176)
Q Consensus 124 t~~~a~H~----pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~-~p~~-~e~ 197 (1176)
+.++++|. .-..++++.... .| ++|+||||++++..... ..+++|+||+||||.+.... -... |.+
T Consensus 165 ~~l~~~h~~~~~~~~~~~~~~~~~-~G--~~v~ysGDT~p~~~~~~-----~a~~aDlLiHEat~~~~~~~~a~~~~HsT 236 (292)
T COG1234 165 TALKAGHPVEERVITPADRIGEPR-KG--KSVVYSGDTRPCDELID-----LAKGADLLIHEATFEDDLEDLANEGGHST 236 (292)
T ss_pred HHHhCCCceeeeecCHHHhccccC-CC--cEEEEECCCCCCHHHHH-----HhcCCCEEEEeccCCchhhhHHhhcCCCC
Confidence 66667775 344444444332 24 69999999998876322 12799999999999874322 1222 677
Q ss_pred HHHHHHHHHHHhhhccccCCCeEEEEEeccccc--hHHHHHHHHH-HcCCcEEE
Q 001045 198 VEYVVNVVNRVGGELNEGLQKRVLFLVATYVIG--KEKILIEIFK-KCGRKVCV 248 (1176)
Q Consensus 198 ~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slG--R~q~ll~ia~-~~g~~I~v 248 (1176)
..+++++++++ +.+.|++.+..+-. ....++..++ .+..++.+
T Consensus 237 ~~eAa~iA~~A--------~vk~LiLtH~s~ry~~~~~~~~~ea~~~f~~~~~~ 282 (292)
T COG1234 237 AEEAAEIAKEA--------GVKKLILTHFSPRYPKDDEELLKEARAIFPGETIV 282 (292)
T ss_pred HHHHHHHHHHc--------CCCeEEEEeecccccchHHHHHHHHHHhCCCceEE
Confidence 77788887766 44555665444422 3444444444 45444554
|
|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=168.79 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=114.8
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC---------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW--------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~--------- 81 (1176)
+-.||||+++|.+.|..+|+.+ .++..++|||+.. ...++++|||||.|.||++||+.+.
T Consensus 4 i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~ 83 (270)
T PRK00055 4 LTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRT 83 (270)
T ss_pred EEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCC
Confidence 4568999999999999999999 7888999999821 1256999999999999999998642
Q ss_pred CCceEEeCHHHHHHHHHhhccCCC---ceE------E----------eCCCceE-EE-CCEEEEEEecCC--CcCceEEE
Q 001045 82 SKGIIFCSEITSRLLSQILNINPK---FIY------P----------LPIKIPV-LI-DGCEVVLVGANH--CPGAVQFL 138 (1176)
Q Consensus 82 ~~~pIY~s~~T~~ll~~~l~~~~~---~i~------~----------l~~~~~~-~i-~~~~Vt~~~a~H--~pGS~~fl 138 (1176)
.+++||+++.+...+...+..... .+. . +..+..+ .+ .+.++. ..+| +.++.+|.
T Consensus 84 ~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~i~~~~~~~ 161 (270)
T PRK00055 84 EPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVT--LEDGRIINPADVLG 161 (270)
T ss_pred ceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEE--eCCCcEEeHHHeec
Confidence 256899999999888765422110 000 0 0011100 01 122222 2344 44788888
Q ss_pred EEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCC--CCChHHHHHHHHHHHHHH
Q 001045 139 FKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFL--FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 139 ie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~--~p~~~e~~~~l~~~i~~~ 208 (1176)
++.++ ++++|+||+++.+. .+..+.++|+||+||||...... ....|...+++.+++++.
T Consensus 162 ~~~~g-----~~~~y~~Dt~~~~~-----~~~~~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~ 223 (270)
T PRK00055 162 PPRKG-----RKVAYCGDTRPCEA-----LVELAKGADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEA 223 (270)
T ss_pred cCCCC-----cEEEEeCCCCCcHH-----HHHHhCCCCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHc
Confidence 88653 69999999987643 12223689999999999865321 122344444555555544
|
|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=162.68 Aligned_cols=145 Identities=19% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCCCCCCCeeE-e-CCccEEEecC--------CcC---------CCCccEEEeccCChhhhCCcccCC--CCceEEeCHH
Q 001045 33 PIPRTFPPSKH-V-PNTRFLIDAF--------RYA---------ADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEI 91 (1176)
Q Consensus 33 ~~~r~~p~~~~-i-pg~~~liD~~--------~~~---------~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~ 91 (1176)
.+.|..+++.+ - .+..+|||++ +.. ...|++|||||.|.||++||+.+. .++|||+++.
T Consensus 33 ~~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~ 112 (302)
T TIGR02108 33 AKARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEM 112 (302)
T ss_pred CccccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHH
Confidence 33567777777 3 4457999997 121 367999999999999999998764 3789999999
Q ss_pred HHHHHHHh--hcc-CCC--ceEEeCCCceEEEC-----CEEEEEEecC--------C------CcCceEEEEEEcCCCCc
Q 001045 92 TSRLLSQI--LNI-NPK--FIYPLPIKIPVLID-----GCEVVLVGAN--------H------CPGAVQFLFKVPGRNGG 147 (1176)
Q Consensus 92 T~~ll~~~--l~~-~~~--~i~~l~~~~~~~i~-----~~~Vt~~~a~--------H------~pGS~~flie~~~~~G~ 147 (1176)
|.+.+... ++. ... ..+.++.++++.++ +++|++|++. | ...+++|.|+.++ .|
T Consensus 113 t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~-~g- 190 (302)
T TIGR02108 113 VLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGT-TG- 190 (302)
T ss_pred HHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCC-CC-
Confidence 99998742 111 111 13567788888764 5999999999 5 1368999999741 02
Q ss_pred ccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 148 FERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 148 ~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
++++|++|+..-.. ..+..+.++|+||+||||
T Consensus 191 -~~~~y~tD~g~~~~----~~~~~l~~~d~liida~~ 222 (302)
T TIGR02108 191 -KRLFYIPGCAEITD----DLKARMAGADLVFFDGTL 222 (302)
T ss_pred -cEEEEECCCCCCCH----HHHHHHhCCCEEEEeCCC
Confidence 79999999864332 223334789999999994
|
This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme. |
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=159.33 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=119.2
Q ss_pred CCCCCCCCCeeEe---CCccEEEecCC------cCCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHHHH
Q 001045 32 PPIPRTFPPSKHV---PNTRFLIDAFR------YAADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITSRL 95 (1176)
Q Consensus 32 p~~~r~~p~~~~i---pg~~~liD~~~------~~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~~l 95 (1176)
+..+-..+++.+. .+..++|||+. ....++++|||||.|.||++|++.+. .+++||+++.|.+.
T Consensus 10 ~~g~~~dn~~~l~~~~~~~~iLiD~G~~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~ 89 (334)
T PRK02126 10 VNGPFDDPGLYVDFLFERRALLFDLGDLHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQ 89 (334)
T ss_pred ecCCCCCcEEEEEECCCCeEEEEcCCCHHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHH
Confidence 3445567777773 36789999983 12268999999999999999998752 24699999999999
Q ss_pred HHHhhc-c--------CCC-ceEEeC----------------------------CCceEEECCEEEEEEecCCCcCceEE
Q 001045 96 LSQILN-I--------NPK-FIYPLP----------------------------IKIPVLIDGCEVVLVGANHCPGAVQF 137 (1176)
Q Consensus 96 l~~~l~-~--------~~~-~i~~l~----------------------------~~~~~~i~~~~Vt~~~a~H~pGS~~f 137 (1176)
+...+. + ++. .+..++ .+..+..++++|+++++.|...|++|
T Consensus 90 l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy 169 (334)
T PRK02126 90 VEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGIPCLAF 169 (334)
T ss_pred HHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCCceeEE
Confidence 998774 1 111 122221 22335668999999999997779999
Q ss_pred EEEEc-------------------------------------------CC---------------------CCcccEEEE
Q 001045 138 LFKVP-------------------------------------------GR---------------------NGGFERYVH 153 (1176)
Q Consensus 138 lie~~-------------------------------------------~~---------------------~G~~~~IlY 153 (1176)
.|+.+ +| .| ++|+|
T Consensus 170 ~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g--~~v~y 247 (334)
T PRK02126 170 ALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPG--QKIGY 247 (334)
T ss_pred EEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCC--CEEEE
Confidence 99852 10 13 58999
Q ss_pred ECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCC--CCChHHHHHHHHHHHHHH
Q 001045 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFL--FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 154 TGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~--~p~~~e~~~~l~~~i~~~ 208 (1176)
+||+++.+... .....-..++|+||+||||...... ....|.+..++.++++++
T Consensus 248 ~gDT~~~~~~~-~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a 303 (334)
T PRK02126 248 VTDIGYTEENL-ARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREA 303 (334)
T ss_pred ECCCCCCcccH-HHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHc
Confidence 99998876421 1111223799999999999864321 223455555666666654
|
|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=150.48 Aligned_cols=136 Identities=19% Similarity=0.270 Sum_probs=102.3
Q ss_pred CccEEEeccCChhhhCCcccCCC-----CceEEeCHHHHHHHHH-hhcc-------CCCceEEeCCCceEEECCEEEEEE
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWS-----KGIIFCSEITSRLLSQ-ILNI-------NPKFIYPLPIKIPVLIDGCEVVLV 126 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~-----~~pIY~s~~T~~ll~~-~l~~-------~~~~i~~l~~~~~~~i~~~~Vt~~ 126 (1176)
.+++|||||.|.||+.||+.+.. ..+|||++.+.+.+.. .++. ....+..+..++.+++++++|+++
T Consensus 29 ~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (194)
T PF12706_consen 29 DIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIGDFRITPF 108 (194)
T ss_dssp CEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEETTEEEEEE
T ss_pred CCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEeceEEEEEE
Confidence 78999999999999999765322 2399999999999994 2321 123467888889999999999999
Q ss_pred ecCCCcCceE----EEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCC---CCCChHHHHH
Q 001045 127 GANHCPGAVQ----FLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKF---LFPLQEESVE 199 (1176)
Q Consensus 127 ~a~H~pGS~~----flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~---~~p~~~e~~~ 199 (1176)
++.|..++++ |+|+.++ ++|+|+||+.+ . +..+.++|+||+||++..... ...+.+....
T Consensus 109 ~~~H~~~~~~~~~g~~i~~~~-----~~i~~~gD~~~--~------~~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~~~ 175 (194)
T PF12706_consen 109 PANHGPPSYGGNKGFVIEPDG-----KKIFYSGDTNY--D------FEELKNIDLLILECGYIDEEEEPPARGPGHMTLE 175 (194)
T ss_dssp EEESSSCCEEECCEEEEEETT-----EEEEEETSSSS--C------HHHHTTBSEEEEEBCBSSGGHHCHHCCTTSBBHH
T ss_pred eccccccccccCceEEEecCC-----cceEEeeccch--h------hhhhccCCEEEEeCCCcchhhcccccCCCCCCHH
Confidence 9999888887 9999754 79999999988 1 233378999999999984221 1223444455
Q ss_pred HHHHHHHHH
Q 001045 200 YVVNVVNRV 208 (1176)
Q Consensus 200 ~l~~~i~~~ 208 (1176)
++.+.+++.
T Consensus 176 ~~~~~~~~~ 184 (194)
T PF12706_consen 176 EALELAKEL 184 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666665
|
... |
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=160.86 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=158.8
Q ss_pred CCCCCCeeE-eCCccEEEecCC-------------cCCCCccEEEeccCChhhhCCcccCCC----CceEEeCHHHHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFR-------------YAADFSVSYFLSHFHSDHYTGLSPSWS----KGIIFCSEITSRLL 96 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~-------------~~~~~i~avfITHaH~DHiggL~~l~~----~~pIY~s~~T~~ll 96 (1176)
.....||.+ +.|+.|+||||. ...+.|++|+|||...-|+||||+... +.|||+|-++..+=
T Consensus 12 de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG 91 (764)
T KOG1135|consen 12 DEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMG 91 (764)
T ss_pred CCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhh
Confidence 345668888 999999999982 122689999999999999999998543 68999999998875
Q ss_pred HHhh-----c------c----------CCCceEEeCCCceEEEC----CEEEEEEecCCCcCceEEEEEEcCCCCcccEE
Q 001045 97 SQIL-----N------I----------NPKFIYPLPIKIPVLID----GCEVVLVGANHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 97 ~~~l-----~------~----------~~~~i~~l~~~~~~~i~----~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~I 151 (1176)
+..+ . + .-..+.++.|.+++.+. |++|++++|||++|.+.+.|...+ .+|
T Consensus 92 ~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~~-----E~i 166 (764)
T KOG1135|consen 92 QMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKVG-----EDI 166 (764)
T ss_pred hhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEecC-----ceE
Confidence 5322 1 0 12357899999999884 579999999999999999998754 699
Q ss_pred EEECCCCCcccccchhh-hhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccc
Q 001045 152 VHTGDFRFCKTMLLQPV-MNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIG 230 (1176)
Q Consensus 152 lYTGDfr~~~~~~~~~~-l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slG 230 (1176)
+|.-||+.....+.++. +..+.++.+||+++.... +..+++...-+++.+.+.+.+.. +|+ |++|+-..|
T Consensus 167 vYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~--~~~~~rkkRDe~f~d~v~~~L~~-----~G~--VlipVDtAg 237 (764)
T KOG1135|consen 167 VYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHAL--YSQPRRKKRDEQFLDTVLKTLRS-----GGN--VLIPVDTAG 237 (764)
T ss_pred EEEEecccchhcccCCccccccCCcceEEecccccc--ccccchhHHHHHHHHHHHHHhcC-----CCc--EEEEecccH
Confidence 99999999887777666 666789999999998876 55688888888999999998776 788 788999999
Q ss_pred hHHHHHHHHHHc
Q 001045 231 KEKILIEIFKKC 242 (1176)
Q Consensus 231 R~q~ll~ia~~~ 242 (1176)
|.-++..++.++
T Consensus 238 RvLELa~iLdql 249 (764)
T KOG1135|consen 238 RVLELALILDQL 249 (764)
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
|
|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=143.27 Aligned_cols=161 Identities=12% Similarity=0.020 Sum_probs=108.2
Q ss_pred eeEeCCccEEEe-cCCcCC-------CCccEEEeccCChhhhCCcccC-----C-----CCceEEeCHHHHHHHHHhh--
Q 001045 41 SKHVPNTRFLID-AFRYAA-------DFSVSYFLSHFHSDHYTGLSPS-----W-----SKGIIFCSEITSRLLSQIL-- 100 (1176)
Q Consensus 41 ~~~ipg~~~liD-~~~~~~-------~~i~avfITHaH~DHiggL~~l-----~-----~~~pIY~s~~T~~ll~~~l-- 100 (1176)
..+.+..++++| ++.... ..++.+||||+|.||++||+.+ | .+..||+++.+.+.++..+
T Consensus 13 ~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~ 92 (277)
T TIGR02650 13 TIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEF 92 (277)
T ss_pred EEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHH
Confidence 344678889999 664332 5689999999999999999531 1 1456999999988888433
Q ss_pred -ccC------CCceEEeCCCceEEEC-C---EEEEEEecCCCc---CceEEEEEEcCC--------------------CC
Q 001045 101 -NIN------PKFIYPLPIKIPVLID-G---CEVVLVGANHCP---GAVQFLFKVPGR--------------------NG 146 (1176)
Q Consensus 101 -~~~------~~~i~~l~~~~~~~i~-~---~~Vt~~~a~H~p---GS~~flie~~~~--------------------~G 146 (1176)
... .-.+.+++.++.+... + ..|.++++.|.. -|.+|.|..... +|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg 172 (277)
T TIGR02650 93 IKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGG 172 (277)
T ss_pred HHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCC
Confidence 211 1123445566666666 3 899999999963 488887763100 00
Q ss_pred -------cccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 147 -------GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 147 -------~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
.-++|+||||+++... + ...++|+||+||||.+........|....++++.++++
T Consensus 173 ~~~t~e~~~~~vvysGDT~~~~~----~---~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a 234 (277)
T TIGR02650 173 DDFTREEHHKILLIIGDDLAADD----E---EEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKA 234 (277)
T ss_pred ccccccccCcEEEEeCCCCCCCh----H---HhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHc
Confidence 1158999999987742 1 22699999999999886432223355566666666654
|
Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences. |
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-12 Score=136.34 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=124.9
Q ss_pred CCCeeE-eCCccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCCC
Q 001045 38 FPPSKH-VPNTRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
.+|+.+ ..+..+++|++.. ...++++|||||.|.||++++..+. ...+||+++.+...+... ++.
T Consensus 8 ~s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~-- 84 (228)
T PRK00685 8 HSAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK-GVE-- 84 (228)
T ss_pred ceEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc-CCC--
Confidence 457777 7889999997421 1237999999999999999887643 367899999988877643 322
Q ss_pred ceEEeCCCceEEECCEEEEEEecCCCcC------------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccC
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGANHCPG------------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFA 173 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a~H~pG------------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~ 173 (1176)
.+..++.++.+.+++++|+++++.|... .++|.|+.++ ++++|+||+.+.+... .+....
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~-----~~i~~~GDt~~~~~~~---~~~~~~ 156 (228)
T PRK00685 85 KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG-----KTIYHAGDTGLFSDMK---LIGELH 156 (228)
T ss_pred ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC-----eEEEEecCccchhHHH---HHHHhh
Confidence 4678889999999999999999999432 5899999854 6999999998765421 122224
Q ss_pred CCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEecc--cc--chHHHHHHHHHHcCCcEEE
Q 001045 174 GCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATY--VI--GKEKILIEIFKKCGRKVCV 248 (1176)
Q Consensus 174 ~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~--sl--GR~q~ll~ia~~~g~~I~v 248 (1176)
++|++++.... ..+.+. +++.+.++.. +.+.+|.++.. .. +..+++...+++.+.++.+
T Consensus 157 ~~D~~~~~~~~----~~h~~~----~ea~~~~~~~--------~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK00685 157 KPDVALLPIGD----NFTMGP----EDAALAVELI--------KPKIVIPMHYNTFPLIEQDPEKFKALVEGLGTKVVI 219 (228)
T ss_pred CCCEEEEecCC----ccccCH----HHHHHHHHhh--------CCCEEEEeccCCCcCCcCCHHHHHHHHHhcCCcEEE
Confidence 78999986531 123333 3445555544 34444444432 22 3356666666666666554
|
|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=136.64 Aligned_cols=208 Identities=16% Similarity=0.108 Sum_probs=124.4
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCcC---------------------------CCCccEEEeccCChhh
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRYA---------------------------ADFSVSYFLSHFHSDH 73 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~~---------------------------~~~i~avfITHaH~DH 73 (1176)
+.+||+++ .+....|+.+ ..+..+|||+|... ..++++|||||.|.||
T Consensus 3 ~~~l~s~s----~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DH 78 (298)
T PRK04286 3 IIPLASES----LGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDH 78 (298)
T ss_pred EEEEEeCC----CCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCcccc
Confidence 34566655 3445566777 78999999998321 2479999999999999
Q ss_pred hCCcccCC-------CCceEEeCHHHHHH-HHH------hh---cc----C-CCceEEeCCCceEEECCEEEEEE-ecCC
Q 001045 74 YTGLSPSW-------SKGIIFCSEITSRL-LSQ------IL---NI----N-PKFIYPLPIKIPVLIDGCEVVLV-GANH 130 (1176)
Q Consensus 74 iggL~~l~-------~~~pIY~s~~T~~l-l~~------~l---~~----~-~~~i~~l~~~~~~~i~~~~Vt~~-~a~H 130 (1176)
++++.... .+.+||+++.+... ... .+ .+ . ......+..++++.+++++|+++ +++|
T Consensus 79 i~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H 158 (298)
T PRK04286 79 HTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPH 158 (298)
T ss_pred CCCccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCC
Confidence 98886531 13567776555421 000 00 00 0 01134567788999999999966 8899
Q ss_pred -Cc-CceEEEE----EEcCCCCcccEEEEECCCC-CcccccchhhhhccCCCcEEEEeC--CCCC-CCCCCCChHHHHHH
Q 001045 131 -CP-GAVQFLF----KVPGRNGGFERYVHTGDFR-FCKTMLLQPVMNEFAGCDAVFLDT--TYCN-PKFLFPLQEESVEY 200 (1176)
Q Consensus 131 -~p-GS~~fli----e~~~~~G~~~~IlYTGDfr-~~~~~~~~~~l~~~~~vDvLI~Es--Ty~~-~~~~~p~~~e~~~~ 200 (1176)
.+ ++++|.+ +.+ | ++++|+||+. ........ .+.. .++|+|++++ +|.. ........+.+.+.
T Consensus 159 ~~~~~~~Gy~i~~ri~~g---g--~~~~~~gDt~~~~~~~~~~-~l~~-~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~ 231 (298)
T PRK04286 159 GADGSKLGYVIMVRISDG---D--ESFVFASDVQGPLNDEAVE-FILE-KKPDVVIIGGPPTYLLGRRLSEEDLEKGIEN 231 (298)
T ss_pred CCCCCccceEEEEEEEeC---C--EEEEEECCCCCCCCHHHHH-HHhc-CCCCEEEeCCcchhhhhhhhccccHHHHHHH
Confidence 44 4555544 443 3 7999999997 22221111 1111 4899999998 3443 11123344555555
Q ss_pred HHHHHHHHhhhccccCCCeEEEEEeccc--cc---hHHHHHHHHHHcCCcEEEc
Q 001045 201 VVNVVNRVGGELNEGLQKRVLFLVATYV--IG---KEKILIEIFKKCGRKVCVD 249 (1176)
Q Consensus 201 l~~~i~~~~~~~~~~~~g~vlvli~~~s--lG---R~q~ll~ia~~~g~~I~vd 249 (1176)
+.+++.. +.+.+++.++-+ .. ..+.+.+.++..++.++..
T Consensus 232 ~~~l~~~---------~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~ 276 (298)
T PRK04286 232 LEEIVKN---------TPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTA 276 (298)
T ss_pred HHHHHhc---------CCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeH
Confidence 5444432 234445553433 22 3346666688888888874
|
|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-12 Score=153.67 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=121.9
Q ss_pred cccCCCCCCCCCCCCCCCCCeeE-eCCcc-EEEecC---------CcC-------CCCccEEEeccCChhhhCCcccCCC
Q 001045 21 TQSSPPDSLIFPPIPRTFPPSKH-VPNTR-FLIDAF---------RYA-------ADFSVSYFLSHFHSDHYTGLSPSWS 82 (1176)
Q Consensus 21 ~~~~l~s~~~~p~~~r~~p~~~~-ipg~~-~liD~~---------~~~-------~~~i~avfITHaH~DHiggL~~l~~ 82 (1176)
.|-.||||++.|...|..+.+.+ ++... |++||| .|+ ..++.+|||||.|.||..||+....
T Consensus 444 eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 444 EIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred EEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHH
Confidence 34579999999999999999999 75555 999998 233 1578899999999999999975211
Q ss_pred ------------CceEEeCHHHHHHHHHhhcc---CCC-------ceEEeCCCce------------EEECCEEEEEEec
Q 001045 83 ------------KGIIFCSEITSRLLSQILNI---NPK-------FIYPLPIKIP------------VLIDGCEVVLVGA 128 (1176)
Q Consensus 83 ------------~~pIY~s~~T~~ll~~~l~~---~~~-------~i~~l~~~~~------------~~i~~~~Vt~~~a 128 (1176)
+.-|.++..-...++..... ... ....+..+.+ -+.+...|...++
T Consensus 524 ~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~v 603 (746)
T KOG2121|consen 524 ARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPV 603 (746)
T ss_pred HHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecCc
Confidence 23455777777777654311 000 0000110111 1246789999999
Q ss_pred CCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCC--CCCChHHHHHHHHHHHH
Q 001045 129 NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKF--LFPLQEESVEYVVNVVN 206 (1176)
Q Consensus 129 ~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~--~~p~~~e~~~~l~~~i~ 206 (1176)
-|||.|++..+.... | .+|+|+||+|.++....-. .+.|+||+|+|+.+.-. .....|.+..+++++.+
T Consensus 604 iHCp~syg~~i~~~~--~--~Ki~YSGDTrP~~~~v~~g-----~datlLIHEAT~ED~l~EeAv~k~HST~sEAi~V~~ 674 (746)
T KOG2121|consen 604 IHCPQSYGCSITHGS--G--WKIVYSGDTRPCEDLVKAG-----KDATLLIHEATLEDDLEEEAVEKGHSTTSEAISVAK 674 (746)
T ss_pred EecChhhceeEeccc--c--eEEEEcCCCCCchhHhhhc-----cCCceEEeehhhchhHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999998754 3 6999999999866532211 68999999999987421 12233444555555555
Q ss_pred HH
Q 001045 207 RV 208 (1176)
Q Consensus 207 ~~ 208 (1176)
..
T Consensus 675 ~m 676 (746)
T KOG2121|consen 675 KM 676 (746)
T ss_pred hc
Confidence 43
|
|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-11 Score=122.31 Aligned_cols=120 Identities=22% Similarity=0.246 Sum_probs=93.1
Q ss_pred CCCCCeeE-eCCccEEEecC-Cc-----------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhh
Q 001045 36 RTFPPSKH-VPNTRFLIDAF-RY-----------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~-~~-----------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l 100 (1176)
+..+++.+ .++..+++|++ .. ...++++|||||.|.||++|++.+. .+.+||+++.+.+.+....
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLL 83 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccc
Confidence 45566677 68889999998 21 1358999999999999999998654 3678999999998887432
Q ss_pred c---------cCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 101 N---------INPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 101 ~---------~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
. .....+..+..++++.+++.+++++++ +|.+|+++++++. .+++|+||+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~-------~~vl~~gD~~~~~~ 148 (183)
T smart00849 84 KLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPE-------GKILFTGDLLFSGG 148 (183)
T ss_pred hhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECC-------CCEEEECCeeeccC
Confidence 1 112345678889999999888888887 8899999988763 48999999876654
|
Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor. |
| >PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=111.09 Aligned_cols=90 Identities=47% Similarity=0.858 Sum_probs=70.8
Q ss_pred CCccccCCCCCeEEEecChHH--------HH--hcCCCceEEEEeccceeecccCceee------eccCCeeEEEEeecC
Q 001045 264 SGVFTEDESETDVHVVGWNEI--------MV--ERGYDKVVGFVPTGWTYEVKRNKFAV------RSKDAFEIHLVPYSE 327 (1176)
Q Consensus 264 ~~~~t~d~~~~~I~v~~~~~~--------~~--~~g~~~~v~i~ptGw~~~~~~~~~~v------~~~~~~~v~~i~~Sg 327 (1176)
.++||.++.+++||+++++.+ +. ...++++++|.||||.+....+.... ....+..++.+|||.
T Consensus 4 ~~~~T~d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSe 83 (110)
T PF07522_consen 4 SSLFTTDPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSE 83 (110)
T ss_pred hceeecCCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEeccc
Confidence 457899999999999988721 11 12377999999999988765433221 134567889999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCC
Q 001045 328 HSNYDELREYVKFLKPKRVIPTVGMD 353 (1176)
Q Consensus 328 HAs~~EL~~~V~~lrPk~VIPvHG~~ 353 (1176)
||++.||++||+.++|++|||++..+
T Consensus 84 HSSf~EL~~Fv~~l~P~~IiPtV~~~ 109 (110)
T PF07522_consen 84 HSSFSELKEFVSFLKPKKIIPTVNVS 109 (110)
T ss_pred CCCHHHHHHHHHhcCCcEEEccccCC
Confidence 99999999999999999999998743
|
The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair []. |
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=123.78 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=95.4
Q ss_pred CCccEEEeccCChhhhC--CcccCC----CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCC-
Q 001045 59 DFSVSYFLSHFHSDHYT--GLSPSW----SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC- 131 (1176)
Q Consensus 59 ~~i~avfITHaH~DHig--gL~~l~----~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~- 131 (1176)
+++|+|||||.|.||+. .+..+. .+.+++++..+.+++.. ++++...++.++.|+++.+++++|+++++.|.
T Consensus 108 ~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~-~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~ 186 (355)
T PRK11709 108 REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG-WGVPKERCIVVKPGDVVKVKDIKIHALDSFDRT 186 (355)
T ss_pred CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh-cCCCcceEEEecCCCcEEECCEEEEEEeccccc
Confidence 57999999999999984 222221 24678999998887664 57766678999999999999999999999541
Q ss_pred ---------------------cCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCC
Q 001045 132 ---------------------PGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFL 190 (1176)
Q Consensus 132 ---------------------pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~ 190 (1176)
..+++|+|+.++ ++|+|+||..+.+... ..... .++|++++...- .+..
T Consensus 187 ~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~-----~tvy~sGDT~~~~~~~--~i~~~-~~iDvall~iG~-~p~~- 256 (355)
T PRK11709 187 ALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG-----GNIYHSGDSHYSNYFA--KHGND-HQIDVALGSYGE-NPRG- 256 (355)
T ss_pred cccccccccccccccccccCCcceEEEEEEeCC-----eEEEEeCCCCccHHHH--HHHhc-CCCCEEEecCCC-CCCC-
Confidence 125899999864 6999999998864321 11222 369999985432 2221
Q ss_pred CCChHHHHHHHHHHHHHH
Q 001045 191 FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 191 ~p~~~e~~~~l~~~i~~~ 208 (1176)
...+...+++.+.++.+
T Consensus 257 -~~~hm~p~ea~~~a~~l 273 (355)
T PRK11709 257 -ITDKMTSIDILRMAESL 273 (355)
T ss_pred -CcCCCCHHHHHHHHHHc
Confidence 12234444566666554
|
|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=127.78 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHh
Q 001045 37 TFPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 37 ~~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~ 99 (1176)
...+|++..+..+|||++.. ...++++|++||.|.||+||++.+. ++.+|||++.+...+...
T Consensus 32 ~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~ 111 (394)
T PRK11921 32 SYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGH 111 (394)
T ss_pred EEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHH
Confidence 34455555566899999731 1247999999999999999998643 468999999999888755
Q ss_pred hccCCCceEEeCCCceEEECCEEEEEEecC--CCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 100 LNINPKFIYPLPIKIPVLIDGCEVVLVGAN--HCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~--H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
+.. ...+..+..|+.+.+++.+++++++. |.||+++++++. .++|||||+
T Consensus 112 ~~~-~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~-------~~vLFsgD~ 163 (394)
T PRK11921 112 YHQ-DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTG-------DNILFSNDA 163 (394)
T ss_pred hCC-CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcC-------CCEEEecCc
Confidence 432 12366788899999999999999763 999999999864 469999996
|
|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-09 Score=127.28 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=90.0
Q ss_pred CCCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHh
Q 001045 37 TFPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 37 ~~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~ 99 (1176)
...+|++..+..++||++.. ...+|++|++||.|.||+|+++.+. .+.+||+++.+...+...
T Consensus 34 t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~ 113 (479)
T PRK05452 34 SYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGH 113 (479)
T ss_pred EEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHh
Confidence 44566666677899998631 1147999999999999999998754 468999999999888765
Q ss_pred hccCCCceEEeCCCceEEEC-CEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 100 LNINPKFIYPLPIKIPVLID-GCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~-~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
.......++.+..|+.+.++ +.+++++++ .|.||+++++++. .++|||||+
T Consensus 114 ~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~-------~~vLFsgD~ 167 (479)
T PRK05452 114 HHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG-------DAVLFSNDA 167 (479)
T ss_pred hcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC-------CCEEEeccc
Confidence 44333346788999999998 478888888 4999999999864 469999995
|
|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=113.98 Aligned_cols=147 Identities=19% Similarity=0.249 Sum_probs=99.5
Q ss_pred CCccEEEeccCChhhhCCcc----cCC----CCceEEeCHHHHHHHHHhh---ccCCC-------------ceEEeCCCc
Q 001045 59 DFSVSYFLSHFHSDHYTGLS----PSW----SKGIIFCSEITSRLLSQIL---NINPK-------------FIYPLPIKI 114 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~----~l~----~~~pIY~s~~T~~ll~~~l---~~~~~-------------~i~~l~~~~ 114 (1176)
..|.++||||+|.||++||- ... .+.+||+.+.|.+.++..+ .++++ .+..+.++.
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~ 157 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGE 157 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccc
Confidence 36889999999999999994 221 4678999999999999753 12221 123344443
Q ss_pred eEEEC-------------CEEEEEEecCC-CcC-----ceEEEEEEcCCCCcccEEEEECCCCCcccccc---hhhhh--
Q 001045 115 PVLID-------------GCEVVLVGANH-CPG-----AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLL---QPVMN-- 170 (1176)
Q Consensus 115 ~~~i~-------------~~~Vt~~~a~H-~pG-----S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~---~~~l~-- 170 (1176)
...+. ++.|++++.+| ..- |.+|+|+.... | +.|+|.||+..+..-.. ...|.
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t-~--~~il~fGD~e~Ds~s~~~~~~~iW~~~ 234 (335)
T PF02112_consen 158 LIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNIT-G--DEILFFGDTEPDSVSKSPRNQKIWRYA 234 (335)
T ss_pred eeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCC-C--CEEEEEeCCCCCccccCchHHHHHHHH
Confidence 32221 35678899999 444 89999998653 3 68999999987653221 11121
Q ss_pred ----ccCCCcEEEEeCCCCCCC-----CCCCChHHHHHHHHHHHHHH
Q 001045 171 ----EFAGCDAVFLDTTYCNPK-----FLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 171 ----~~~~vDvLI~EsTy~~~~-----~~~p~~~e~~~~l~~~i~~~ 208 (1176)
...+...+|+||.|.+.. +-|.+....++++..+.+..
T Consensus 235 ap~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~ 281 (335)
T PF02112_consen 235 APKIASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKV 281 (335)
T ss_pred HhhccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhcc
Confidence 126889999999999653 34666677777776666544
|
1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process |
| >COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=110.11 Aligned_cols=168 Identities=26% Similarity=0.340 Sum_probs=116.6
Q ss_pred cCcCCCCC-cc-CCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC---CCchhHHHHHH
Q 001045 950 LSMVPGVP-IK-PMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---SRFPDLISIIN 1024 (1176)
Q Consensus 950 ~~l~~g~P-i~-PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T---~~ypdl~~~l~ 1024 (1176)
.-+-.|-| |+ -+|..+ .+-+.|+...+++|+|+||..+.|.+- +|.+.-.||+|-.+. .+.+++.+.
T Consensus 62 ~~vi~GfPkI~R~llL~p-----~ik~~F~~~~v~VEEKmnGYNVRV~k~-~g~vyAiTRgG~ICPfTT~r~~~l~~~-- 133 (382)
T COG1423 62 LFVIRGFPKIRRALLLEP-----TIKKHFGRGKVVVEEKMNGYNVRVVKL-GGEVYAITRGGLICPFTTERLRDLIDL-- 133 (382)
T ss_pred ceEEecCchhheeeccch-----hhHhhcCCCcEEEEEeccCceEEEEEE-CCEEEEEecCceecCchhHHHHhhcch--
Confidence 33455665 33 344432 234567778999999999999999994 899999999998763 444554433
Q ss_pred hhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC-CcccccCCHHHHHH
Q 001045 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN-GEQLLGYTLRQRRK 1103 (1176)
Q Consensus 1025 ~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln-G~~Ll~~Pl~eRr~ 1103 (1176)
.+...-++.||-||||..+ +...| . .. -..-++.|++|||...| |++| |..||++
T Consensus 134 -eff~d~p~lvlcgEmvG~e----nPYv~---------~-~~------y~~e~v~fFvFDire~~tgr~L---p~eer~~ 189 (382)
T COG1423 134 -EFFDDYPDLVLCGEMVGPE----NPYVP---------G-PY------YEKEDVGFFVFDIREKNTGRPL---PVEERLE 189 (382)
T ss_pred -hhHhhCCCcEEEEEeccCC----CCCCC---------C-CC------CccCCceEEEEEEEecCCCCCC---CHHHHHH
Confidence 2223457899999999865 23444 0 00 01235899999999877 4555 9999999
Q ss_pred HHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1104 YLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1104 lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
+.++.-- .++.+-..+.. .+..++|.++.++.-++|.||||+|+++
T Consensus 190 l~ekYgl----~~V~~fg~~~~---------~e~~eei~eIve~L~keGREGVV~Kdpd 235 (382)
T COG1423 190 LAEKYGL----PHVEIFGEFPA---------DEAGEEIYEIVERLNKEGREGVVMKDPD 235 (382)
T ss_pred HHHHcCC----CceEEeeeech---------hHhHHHHHHHHHHHhhcCCcceEecCcc
Confidence 9998751 22333222221 1223899999999999999999999987
|
|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=113.48 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=76.7
Q ss_pred ccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCCCceEEeCCCce
Q 001045 47 TRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIP 115 (1176)
Q Consensus 47 ~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~ 115 (1176)
..++||++.. ...++++||+||.|.||+||+..+. .+.+||+++.+. +. ...+.+..++.
T Consensus 21 ~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~~--------~~-~~~~~v~~g~~ 91 (248)
T TIGR03413 21 QAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEER--------IP-GITHPVKDGDT 91 (248)
T ss_pred CEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEeccccc--------CC-CCcEEeCCCCE
Confidence 6899999832 1236899999999999999998753 247899988651 11 12457788999
Q ss_pred EEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 116 VLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 116 ~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.+++..|+++.+ ||.+|+++|++.. .+++||||+-+.
T Consensus 92 ~~~g~~~i~v~~tpGHT~g~i~~~~~~-------~~~lftGDtl~~ 130 (248)
T TIGR03413 92 VTLGGLEFEVLAVPGHTLGHIAYYLPD-------SPALFCGDTLFS 130 (248)
T ss_pred EEECCEEEEEEECCCCCcccEEEEECC-------CCEEEEcCcccc
Confidence 9999999999987 6999999998863 369999998543
|
Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). |
| >PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=108.97 Aligned_cols=155 Identities=23% Similarity=0.333 Sum_probs=96.8
Q ss_pred hccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcc
Q 001045 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKI 1051 (1176)
Q Consensus 975 ~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~ 1051 (1176)
.+...+|++.+|-||.|+.+.+. ++.+.++.|+.+-+- -.+|--.+-. ......+.+||||||. |...+
T Consensus 12 ~l~~~~Y~V~eKaDG~Ryll~i~-~~~~ylidr~~~~~~v~~~~~p~~~~~~---~~~~~~~TLLDGElV~-d~~~~--- 83 (192)
T PF01331_consen 12 LLQQKDYFVCEKADGTRYLLLIT-DNGVYLIDRKNNVFKVDNLHFPSKKDSS---DGRHHQDTLLDGELVL-DKDPG--- 83 (192)
T ss_dssp HHHHS-EEEEEEESSEEEEEEEE-EEEEEEEETTS-EEEESSST-ECTTC-----TTCEGCSEEEEEEEEE-EECTT---
T ss_pred HHhhCCcEEEECCCCcEEEEEEe-cceEEEEeCCCcEEEecCcccccccccc---cccccCCEEEEEEEEc-ccCCC---
Confidence 34456899999999999999995 558999999987553 2233211100 0123468999999987 22110
Q ss_pred cChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC------C-------CcEE
Q 001045 1052 MSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK------M-------GYFQ 1118 (1176)
Q Consensus 1052 ~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~------~-------~~i~ 1118 (1176)
+..+.|++||+|++||+++.+.||.+|...|++.+..+. + ..|.
T Consensus 84 -----------------------~~~~~flifD~l~~~G~~v~~~~~~~Rl~~l~~~i~~p~~~~~~~~~~~~~~~~pf~ 140 (192)
T PF01331_consen 84 -----------------------EKKPRFLIFDILAINGQNVTDKPLDERLAYLQEEIIEPRKNAELKSGIIKKKKEPFS 140 (192)
T ss_dssp -----------------------CEEEEEEEEEEEEETTEEGCCSBHHHHHHHHHHHTHHHHHHHHCHTTSCTCTTSSSE
T ss_pred -----------------------CCceEEEEEeeehhCCcEeccCCHHHHHHHHHHHHHHHHHhhcccccccccccccee
Confidence 234899999999999999999999999999987652210 0 1122
Q ss_pred E-eEEEEEcCCCCCCccccCHHH-HHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1119 Y-AKEMTVEGDDNCLTSDVSLSK-INNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1119 ~-~~~~~v~~~~~~~~~~~~~ee-i~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
+ .+...- ....+. +...+..-+..+..|||.=..+ .+|.||.
T Consensus 141 i~~K~~~~---------~~~~~~~~~~~~~~~l~h~~DGLIFtp~~--~pY~~Gt 184 (192)
T PF01331_consen 141 IRIKDFFP---------IYQIEKLLFEEFIPKLPHETDGLIFTPVN--TPYVPGT 184 (192)
T ss_dssp EEE---EE---------GGGHHHHCHHCCCCCTTSTEEEEEEEESS--SB--SEE
T ss_pred eeccccHH---------HHhhHHHHHHHhhccCCCCCCEEEEecCC--CCccCCC
Confidence 2 111110 112222 2222333456788999999876 8999983
|
X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 3RTX_A 3KYH_D 3S24_G 1CKN_B 1CKO_A 1CKM_B 1P16_B. |
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=112.07 Aligned_cols=157 Identities=19% Similarity=0.086 Sum_probs=102.5
Q ss_pred eCCccEEEecCC---cC-----CCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHh--hc-cCCCceEEe
Q 001045 44 VPNTRFLIDAFR---YA-----ADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQI--LN-INPKFIYPL 110 (1176)
Q Consensus 44 ipg~~~liD~~~---~~-----~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~--l~-~~~~~i~~l 110 (1176)
+....+++|.+- .. ...+++||+||.|.||+.|++.+. ...++|+.+.|....... .+ ++.....++
T Consensus 38 ~~~~~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (269)
T COG1235 38 VGVKTLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPF 117 (269)
T ss_pred ecceeEEEecChhHHhhhhcccccccCeEEEecccHHhhcChHHHHHHhcCCcccccceecccchhhhhccchhhhcCCC
Confidence 344467889861 11 137999999999999999999754 366778777776655532 11 111123344
Q ss_pred CCCceEEECCEEEEEEecCC-CcC-----------------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhcc
Q 001045 111 PIKIPVLIDGCEVVLVGANH-CPG-----------------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEF 172 (1176)
Q Consensus 111 ~~~~~~~i~~~~Vt~~~a~H-~pG-----------------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~ 172 (1176)
..+....++++.+++++..| ... ..+|..+... +.+.|++|+...+.... ..+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~vay~~Dt~~~~~~~d-~~l~~~ 191 (269)
T COG1235 118 PPFSLPAIGGLEVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRI-----GDVAYLTDTELFPSNHD-VELLDN 191 (269)
T ss_pred CccccccccceeeecCCCCCccccCCCcccccCcccccccccceeeeeeee-----ccEEEccccccCcchhH-HHHhcC
Confidence 45666777888888888888 222 2333333221 47889999987766544 233344
Q ss_pred CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 173 AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 173 ~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
...++++.+.++..+ .+.+.+...+++.+++...
T Consensus 192 ~~~~~~~~~~~~~~~--gh~~~h~~~~~a~~~~~~~ 225 (269)
T COG1235 192 GLYPLDIKDRILPDP--GHLSNHLSAEEALELIEKL 225 (269)
T ss_pred Cccceeeeecccccc--CCCCCchhHHHHHHHHHhC
Confidence 778999999999875 4566677777777777655
|
|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=97.49 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCCeeE-eCCccEEEecCCcC------CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEe
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA------ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPL 110 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~------~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l 110 (1176)
..|..+ ..|..+++|++... ..++++|||||.|.||+.. ..+. .. ...+..+
T Consensus 7 ha~~~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~-~~l~-~~-------------------~~~~~vv 65 (163)
T PF13483_consen 7 HASFLIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDP-ETLK-RL-------------------DRDIHVV 65 (163)
T ss_dssp TTEEEEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CC-CCCC-CH-------------------HTSSEEE
T ss_pred eeEEEEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCCh-hHhh-hc-------------------ccccEEE
Confidence 356666 78999999998632 4689999999999999975 1111 11 2246677
Q ss_pred CCCceEEECCEEEEEEecCCC-------cCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCC
Q 001045 111 PIKIPVLIDGCEVVLVGANHC-------PGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTT 183 (1176)
Q Consensus 111 ~~~~~~~i~~~~Vt~~~a~H~-------pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsT 183 (1176)
..++.+++++++|+.+++.|. .+.++|+|+.++ .+|+|.||....... ..+..+.++|++++-..
T Consensus 66 ~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g-----~~i~~~Gd~~~~~~~---~~~~~~~~vDvl~~p~~ 137 (163)
T PF13483_consen 66 APGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGG-----VTIYHAGDTGFPPDD---EQLKQLGKVDVLFLPVG 137 (163)
T ss_dssp -TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETT-----EEEEE-TT--S---H---HHHHHH-S-SEEEEE--
T ss_pred ccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCC-----CEEEEECCCccCCCH---HHHhcccCCCEEEecCC
Confidence 778899999999999999883 337999999953 799999999764321 22334468999999865
Q ss_pred C
Q 001045 184 Y 184 (1176)
Q Consensus 184 y 184 (1176)
-
T Consensus 138 g 138 (163)
T PF13483_consen 138 G 138 (163)
T ss_dssp T
T ss_pred C
Confidence 4
|
|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-08 Score=111.07 Aligned_cols=100 Identities=20% Similarity=0.202 Sum_probs=77.2
Q ss_pred ccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHhhccCCCceEEeCCCce
Q 001045 47 TRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQILNINPKFIYPLPIKIP 115 (1176)
Q Consensus 47 ~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~ 115 (1176)
..++||.+.. ...++++||+||.|.||+||+..+.. +.+||+++...+.+. + .-..+..|+.
T Consensus 99 ~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i~---~----~d~~v~dGd~ 171 (329)
T PLN02398 99 TVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRIP---G----IDIVLKDGDK 171 (329)
T ss_pred EEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhcc---C----CcEEeCCCCE
Confidence 3578998732 12568999999999999999987542 579999987654321 1 2356788899
Q ss_pred EEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 116 VLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 116 ~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.+++.+++.+.+ ||.+|+++|++.. ..++||||+-+.
T Consensus 172 i~lgg~~l~vi~tPGHT~GhI~~~~~~-------~~vLFtGDtLf~ 210 (329)
T PLN02398 172 WMFAGHEVLVMETPGHTRGHISFYFPG-------SGAIFTGDTLFS 210 (329)
T ss_pred EEECCeEEEEEeCCCcCCCCEEEEECC-------CCEEEECCCcCC
Confidence 9999999999888 9999999998752 359999998554
|
|
| >TIGR01209 RNA ligase, Pab1020 family | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=105.41 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=107.5
Q ss_pred cCcCCCCCc-cC-CCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC---CCchhHHHHHH
Q 001045 950 LSMVPGVPI-KP-MLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---SRFPDLISIIN 1024 (1176)
Q Consensus 950 ~~l~~g~Pi-~P-MLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T---~~ypdl~~~l~ 1024 (1176)
..+-+|-|= +- |+..+ ++. +.|.++.+++|+|+||..+-|.. -+|++..+||+|-.+. .+++++.+ .
T Consensus 53 ~~vv~GyP~I~R~~~L~~--gi~---~~f~~~~v~vEEKlDG~Nvri~~-~~g~l~a~tRGgyicp~tt~r~~~~~~--~ 124 (374)
T TIGR01209 53 LFVIRGFPHIKRILLLRP--GIK---RHFKDPEVVVEEKMNGYNVRIVK-YGGNVYALTRGGFICPFTTERLPDLID--L 124 (374)
T ss_pred ccEEcCCCCcceeeccch--hhH---HhcCCCcEEEEEeecCceEEEEe-ECCEEEEEccCcccCCCcHHHHHHHhh--H
Confidence 346667763 32 32221 233 44566669999999999999976 5899999999998872 22344433 1
Q ss_pred hhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHH
Q 001045 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKY 1104 (1176)
Q Consensus 1025 ~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~l 1104 (1176)
. +...-++++|-||++.-+. |. .+. .......+..|++|||.. ...-.-+|+.+|+++
T Consensus 125 ~-~~~d~p~l~LcGE~iGpen-------pY------~~h------s~~y~~l~~~FfvFDI~d--~~t~~~L~~~er~~l 182 (374)
T TIGR01209 125 E-FFDDNPDLVLCGEMAGPEN-------PY------TPE------YYPEVKEDLGFFLFDIRE--GKTNRSLPVEERLEL 182 (374)
T ss_pred H-hhccCCCeEEEEEEcCCCC-------CC------ccc------CccccCCCceEEEEEEEE--CCCCccCCHHHHHHH
Confidence 2 3334578999999997431 10 000 011123367899999973 334455799999999
Q ss_pred HHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1105 LKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1105 L~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
++++--..+| .+. .... ....+++.++.+..-++|.||||+|+++
T Consensus 183 ~e~yglp~Vp-vlg---~~~~---------~~~~~~~~eii~~L~~~gREGVVlK~~~ 227 (374)
T TIGR01209 183 AEKYGLPHVE-ILG---VYTA---------DEAVEEIYEIIERLNKEGREGVVMKDPE 227 (374)
T ss_pred HHHCCCCccc-eee---EEcH---------HHHHHHHHHHHHHhhhcCcceEEEcCcc
Confidence 9987311111 111 1111 1223477888888889999999999885
|
Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity. |
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=104.68 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=74.0
Q ss_pred ccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCCCceEEeCCCc
Q 001045 47 TRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINPKFIYPLPIKI 114 (1176)
Q Consensus 47 ~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~ 114 (1176)
..++||++.. ...++++||+||.|.||+||+..+. .+.+||++.... . ....+.+..|+
T Consensus 24 ~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~--------~-~~~~~~v~~gd 94 (258)
T PLN02469 24 DAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN--------V-KGCTHPVENGD 94 (258)
T ss_pred eEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc--------C-CCCCeEeCCCC
Confidence 5799999732 1247999999999999999998643 357999976421 1 11135677889
Q ss_pred eEEECC-EEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 115 PVLIDG-CEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 115 ~~~i~~-~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.+.+++ +.++.+.+ ||.+|+++|++....+ . ..++||||+-+
T Consensus 95 ~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~-~--~~~lFtGDtLf 138 (258)
T PLN02469 95 KLSLGKDVNILALHTPCHTKGHISYYVTGKEG-E--DPAVFTGDTLF 138 (258)
T ss_pred EEEECCceEEEEEECCCCCCCCEEEEeccCCC-C--CCEEEecCccc
Confidence 999985 67888876 9999999999864211 1 36999999644
|
|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=104.71 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCeeEeC-----CccEEEecCCcC-----------CCCccEEEeccCChhhhCCcccCC---CCceEEeCH
Q 001045 30 IFPPIPRTFPPSKHVP-----NTRFLIDAFRYA-----------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSE 90 (1176)
Q Consensus 30 ~~p~~~r~~p~~~~ip-----g~~~liD~~~~~-----------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~ 90 (1176)
.+..+...+.+|.++. +..++||++... ..++.+||+||.|.||++|+..+. ...++|+++
T Consensus 15 ~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~ 94 (251)
T PLN02962 15 QLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISK 94 (251)
T ss_pred EeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecc
Confidence 3444445566777742 346899997311 146889999999999999998753 367898865
Q ss_pred HHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 91 ITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 91 ~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.. +... -..+..++.+.++++.++.+.+ ||.+|+++|++....+ ....+++||||+-+.
T Consensus 95 ~~--------~~~~--d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~-~~~~~~lftGD~Lf~ 154 (251)
T PLN02962 95 AS--------GSKA--DLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPD-QPQPRMAFTGDALLI 154 (251)
T ss_pred cc--------CCCC--CEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCC-CCccceEEECCeecc
Confidence 32 1111 2357788899999998888887 9999999998853110 001369999997443
|
|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-07 Score=103.51 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=73.4
Q ss_pred CccEEEecCCcC---------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCCCceEEeCCC
Q 001045 46 NTRFLIDAFRYA---------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINPKFIYPLPIK 113 (1176)
Q Consensus 46 g~~~liD~~~~~---------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~ 113 (1176)
+..++||++... ...+++||+||.|.||+||+..+. ...+||++..+.. ....+.+..|
T Consensus 22 ~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~---------~~~~~~v~~g 92 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD---------KGTTQVVKDG 92 (251)
T ss_pred CcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc---------cCCceEeCCC
Confidence 457999998321 235789999999999999998743 3579999876421 1123567788
Q ss_pred ceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 114 IPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 114 ~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.+.+++..++++.+ ||.+|+++|+.. .++||||+-+.
T Consensus 93 ~~i~ig~~~~~vi~tPGHT~ghi~~~~~---------~~lFtGDtlf~ 131 (251)
T PRK10241 93 ETAFVLGHEFSVFATPGHTLGHICYFSK---------PYLFCGDTLFS 131 (251)
T ss_pred CEEEeCCcEEEEEEcCCCCccceeeecC---------CcEEEcCeecc
Confidence 999999989999886 899999999641 37999997543
|
|
| >PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-07 Score=74.59 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=32.6
Q ss_pred cCCeeEEEEeecCCCCHHHHHHHHHHcCCCEEEEEec
Q 001045 315 KDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVG 351 (1176)
Q Consensus 315 ~~~~~v~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG 351 (1176)
..+|+++.++|||||+++||.+|++.++|++||||||
T Consensus 4 ~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 4 PVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp E--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred EeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 3467889999999999999999999999999999999
|
The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A .... |
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-07 Score=94.22 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCCC---CceEEeCHHHHHHHHHhh
Q 001045 39 PPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~~ll~~~l 100 (1176)
.++.+ .++..++||++.. ...+|++||+||+|.||+||++.+.. ...+++............
T Consensus 7 n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (194)
T PF00753_consen 7 NSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPD 86 (194)
T ss_dssp EEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccccccc
Confidence 45566 6888999999821 22689999999999999999987543 344555555554444322
Q ss_pred cc--------CCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 101 NI--------NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 101 ~~--------~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
.. .................+.....+...|.+++..+.+..++ ++++||||+-+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 87 RDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPG-----GKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETT-----TTEEEEETTSCTTT
T ss_pred cccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCC-----CcEEEeeeEeccCC
Confidence 10 01112233333444444444555555566666666666554 58999999977654
|
These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A .... |
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=94.20 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=87.6
Q ss_pred CCccEEEeccCChhhhCCcccCC------CCceEEeCHHHHHHHHHhh---ccCCC---------ceEEeCCCceE--EE
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSW------SKGIIFCSEITSRLLSQIL---NINPK---------FIYPLPIKIPV--LI 118 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~------~~~pIY~s~~T~~ll~~~l---~~~~~---------~i~~l~~~~~~--~i 118 (1176)
..|..+||||+|.||+.||--.. .+..||+.+.|++.++... -+++. +++.+.+.+.. .+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 36888999999999999984311 2458999999999999764 12221 35566666543 34
Q ss_pred CCEEEEEEecCC-C-cC----ceEEEEEEcCCCCcccEEEEECCCCCcccccc---hhhhhcc------CCCcEEEEeCC
Q 001045 119 DGCEVVLVGANH-C-PG----AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLL---QPVMNEF------AGCDAVFLDTT 183 (1176)
Q Consensus 119 ~~~~Vt~~~a~H-~-pG----S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~---~~~l~~~------~~vDvLI~EsT 183 (1176)
-.+++.+||++| . .| |.||+|.....+ .-++|.||...+..... ...|... .+..-+++||+
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~---~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS 267 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSN---EFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECS 267 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecCCCc---ceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEec
Confidence 467899999999 3 23 589999976432 57999999976543221 2222221 56788999999
Q ss_pred CCCC
Q 001045 184 YCNP 187 (1176)
Q Consensus 184 y~~~ 187 (1176)
|.+.
T Consensus 268 ~P~~ 271 (356)
T COG5212 268 YPND 271 (356)
T ss_pred CCCC
Confidence 9875
|
|
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9e-05 Score=86.35 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=116.9
Q ss_pred CCccEEEeccCChhhhCCcccC----CCCceEEeCHHHHHHHHHhhc--------c--------C---------------
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEITSRLLSQILN--------I--------N--------------- 103 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T~~ll~~~l~--------~--------~--------------- 103 (1176)
+.||+|+||..|. +-|||++ .+.+.||+|+.|+.+=+-++. + +
T Consensus 95 stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~ 172 (653)
T KOG1138|consen 95 STIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKK 172 (653)
T ss_pred cceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchh
Confidence 5799999999985 7788874 346899999999987543320 0 0
Q ss_pred -------------------CCceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccc
Q 001045 104 -------------------PKFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTM 163 (1176)
Q Consensus 104 -------------------~~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~ 163 (1176)
...++.+.+.+.+.+ |.+.||++..||+.||+-++|.++. +++.|..+-.+-.+.
T Consensus 173 ~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~n-----ek~sYvS~Ss~ltth 247 (653)
T KOG1138|consen 173 AVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPN-----EKLSYVSGSSFLTTH 247 (653)
T ss_pred hccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCC-----cceEEEecCcccccC
Confidence 012456677887776 6799999999999999999999976 589999887654432
Q ss_pred cchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHc-
Q 001045 164 LLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKC- 242 (1176)
Q Consensus 164 ~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~- 242 (1176)
...-....++.+|+||+-+----+. ..|. +-.-++..-+....++ +|. +++|+|..|-+-++++...+.
T Consensus 248 ~r~md~a~Lk~~Dvli~T~lsql~t-anpd--~m~gelc~nvt~~~rn-----~Gs--vL~PcyPsGviydl~Ecls~~i 317 (653)
T KOG1138|consen 248 PRPMDQAGLKETDVLIYTGLSQLPT-ANPD--EMGGELCKNVTLTGRN-----HGS--VLLPCYPSGVIYDLIECLSQDI 317 (653)
T ss_pred CccccccccccccEEEEeccccccc-CCcc--chhhhHHHHHHHHhhc-----CCc--eeeeccCCchhhHHHHHhhhcc
Confidence 2211122347899999876433321 1111 1122233333333333 567 789999999999999887543
Q ss_pred ------CCcEEE
Q 001045 243 ------GRKVCV 248 (1176)
Q Consensus 243 ------g~~I~v 248 (1176)
+.|+|+
T Consensus 318 dna~ls~~P~yf 329 (653)
T KOG1138|consen 318 DNAGLSDTPIYF 329 (653)
T ss_pred cccCCcCCcceE
Confidence 368887
|
|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=89.57 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=100.2
Q ss_pred CCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcc--cCC-CCceEEeCHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLS--PSW-SKGIIFCSEITSRLLS 97 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~--~l~-~~~pIY~s~~T~~ll~ 97 (1176)
...+..+ ..+.++++|.+-.. .+.+++|+|||.|.||+..=. .+. ...+++..+.....+.
T Consensus 13 Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~ 92 (258)
T COG2220 13 GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLL 92 (258)
T ss_pred cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHH
Confidence 3455666 78889999997321 145899999999999997432 222 2367777777765555
Q ss_pred HhhccCCCceEEeCCCceEEECCEEEEEEecCCC-----cC--------ceEEEEEEcCCCCcccEEEEECCCCCccccc
Q 001045 98 QILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC-----PG--------AVQFLFKVPGRNGGFERYVHTGDFRFCKTML 164 (1176)
Q Consensus 98 ~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~-----pG--------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~ 164 (1176)
...++....+..+.++..+++++++|++.++.|. ++ .++|+|+.++ .+++|.||..+ .
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g-----~~iyh~GDt~~---~- 163 (258)
T COG2220 93 IRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPG-----GRVYHAGDTGY---L- 163 (258)
T ss_pred HhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCC-----ceEEeccCccH---H-
Confidence 5567777778999999999999999999999882 22 5779999865 69999999987 1
Q ss_pred chhhhhccCCCcEEEEeCCCC
Q 001045 165 LQPVMNEFAGCDAVFLDTTYC 185 (1176)
Q Consensus 165 ~~~~l~~~~~vDvLI~EsTy~ 185 (1176)
..........+|++++..--.
T Consensus 164 ~~~~~~~~~~~DvallPig~~ 184 (258)
T COG2220 164 FLIIEELDGPVDVALLPIGGY 184 (258)
T ss_pred HHhhhhhcCCccEEEeccCCC
Confidence 111111223489999987643
|
|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.3e-06 Score=94.66 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCCCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHH
Q 001045 36 RTFPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 36 r~~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~ 98 (1176)
.+...|++..+...|||.... ...+|++|+++|.-.||.|+|+.+. ++.+|+||...++.|+.
T Consensus 34 ttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~ 113 (388)
T COG0426 34 TTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKG 113 (388)
T ss_pred ceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHH
Confidence 345567778888999999732 2257999999999999999998754 47899999999999998
Q ss_pred hhccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 99 ILNINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 99 ~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
.+..+.. +..+..|+.+.+|+-++++++| -|-||+...+... .+||||+|+.
T Consensus 114 ~~~~~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~-------~kILFS~D~f 167 (388)
T COG0426 114 FYHDPEW-FKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPE-------DKILFSCDAF 167 (388)
T ss_pred hcCCccc-eeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecC-------CcEEEccccc
Confidence 7765544 8899999999999988888888 7899998777654 3699999963
|
|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-06 Score=91.37 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=74.2
Q ss_pred ccEEEecCCcC-------------CCCccEEEeccCChhhhCCcccCCC---CceEEeCHHHHHHHHHhhc---------
Q 001045 47 TRFLIDAFRYA-------------ADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITSRLLSQILN--------- 101 (1176)
Q Consensus 47 ~~~liD~~~~~-------------~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~~ll~~~l~--------- 101 (1176)
..++||++-.. ..+|++|++||.|.||+||+..+.. ..++|..+...........
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 68999997322 1268999999999999999976532 3677766666555443321
Q ss_pred --cC-CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 102 --IN-PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 102 --~~-~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.+ ......+..++.+.+++..++.+++ ||.||+.+|+++. .+++|+||.-+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~-------~~~l~~gD~~~~~ 172 (252)
T COG0491 116 YAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED-------GGVLFTGDTLFAG 172 (252)
T ss_pred CCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC-------ccEEEecceeccC
Confidence 01 1123445567788888855555554 9999999999985 2499999975543
|
|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.8e-05 Score=94.04 Aligned_cols=125 Identities=14% Similarity=0.000 Sum_probs=83.5
Q ss_pred CeeE-eCCccEEEecCCc-C----------------CCCccEEEeccCChhhhCCcccCCC---CceEEeCHHHHHHHHH
Q 001045 40 PSKH-VPNTRFLIDAFRY-A----------------ADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~~-~----------------~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~~ll~~ 98 (1176)
++.+ .++..++||++.. . .-++|+++|||.|.||+||++.+.. ...||.+....
T Consensus 452 aili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~----- 526 (662)
T TIGR00361 452 AMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFV----- 526 (662)
T ss_pred EEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccchh-----
Confidence 3444 5778899999732 0 0139999999999999999987543 34677765421
Q ss_pred hhccCCCceEEeCCCceEEECCEEEEEEecCC------CcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhc-
Q 001045 99 ILNINPKFIYPLPIKIPVLIDGCEVVLVGANH------CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNE- 171 (1176)
Q Consensus 99 ~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H------~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~- 171 (1176)
........+..|+.+++++++++++..+. --.|+.+.++..+ .++++|||........ .+..
T Consensus 527 ---~~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~-----~~~L~tGD~~~~~E~~---l~~~~ 595 (662)
T TIGR00361 527 ---EEGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGG-----NSWLLTGDLEAEGEQE---VMRVF 595 (662)
T ss_pred ---hCCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECC-----eeEEEecCCCHHHHHH---HHhcc
Confidence 11123556778899999999999886432 2357888888743 7999999986643321 1111
Q ss_pred -cCCCcEEEE
Q 001045 172 -FAGCDAVFL 180 (1176)
Q Consensus 172 -~~~vDvLI~ 180 (1176)
..++|+|..
T Consensus 596 ~~l~~dvLk~ 605 (662)
T TIGR00361 596 PNIKADVLQV 605 (662)
T ss_pred cCcCccEEEe
Confidence 135677765
|
The role for this protein in species that are not naturally transformable is unknown. |
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=86.38 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=68.0
Q ss_pred CCccEEEeccCChhhhCCcccCCC----CceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcC
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSWS----KGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPG 133 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~~----~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pG 133 (1176)
..+.+||.||-|.||+||+..+.. ++.+|+.. .... +..-+.+..++.+.+++.+|+.+.+ +|.-|
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~------~~r~---~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~ 120 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA------DDRI---PGITRGLKDGETVTVGGLEVRCLHTPGHTAG 120 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhccCCcEEecCC------hhcC---ccccccCCCCcEEEECCEEEEEEeCCCccCC
Confidence 578999999999999999986432 56677764 1111 1123347788999999999999998 99999
Q ss_pred ceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 134 AVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 134 S~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+..|++... .| .+.++|||.-+.
T Consensus 121 hi~~~~~~~--~~--e~~iFtGDtlf~ 143 (265)
T KOG0813|consen 121 HICYYVTES--TG--ERAIFTGDTLFG 143 (265)
T ss_pred cEEEEeecC--CC--CCeEEeCCceee
Confidence 999999851 13 579999997443
|
|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=95.21 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=88.0
Q ss_pred CCcchHHHHHHHHHHHhhh---chHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHH
Q 001045 711 QPAPYIHLARTFDLVEAER---GKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEA 787 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~---~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~ 787 (1176)
.+++|.+++++|++|++++ ++.+|+++|+++|+.+ +|+++.+.++++++.+. +|+++.++.+||+++
T Consensus 113 ~~lti~eV~~~L~~Ia~~sg~~s~~~k~~iL~~Ll~~~---~~~E~k~iirli~g~lr-------iGv~e~~il~ALa~A 182 (590)
T PRK01109 113 EPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDA---SPLEAKYIARFVEGRLR-------LGVGDATILDALAIA 182 (590)
T ss_pred CCcCHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHhhhhh-------cCccHHHHHHHHHHH
Confidence 4689999999999999998 8899999999999996 78999999999999986 899999999999999
Q ss_pred hC--CChHHHHHHHHhcCChHHHHHHHHh
Q 001045 788 CG--TNRSKIRDMYNRLGDLGDVAQECRQ 814 (1176)
Q Consensus 788 ~g--~~~~~i~~~~~~~GDlG~va~~~~~ 814 (1176)
+| .+...+++.|+..||+|.+|..+..
T Consensus 183 ~~~~~~~~~ve~~y~~~~Dlg~va~~l~~ 211 (590)
T PRK01109 183 FGGAVARELVERAYNLRADLGYIAKILAE 211 (590)
T ss_pred HhcccchHHHHHHHHhCCCHHHHHHHHHh
Confidence 99 9999999999999999999998864
|
|
| >COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.7e-05 Score=87.04 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=103.3
Q ss_pred cCceEEEEEecceeEEEEEEeeC-----CeEEEEcCCCccC---CCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCC
Q 001045 977 QNKAFTCEYKYDGQRAQIHKLVD-----GTVRIFSRNGDET---TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNG 1048 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~~~-----g~V~ifSR~g~d~---T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g 1048 (1176)
-..+|++.+|-||.||.+.+... -.+.+|.|..+=| |..||-+...... ...-.+-.||||+|. |
T Consensus 60 l~~dy~VCEKsDGvR~Ll~vte~p~tg~~~~y~~DR~nnfY~v~~~f~p~~~~~k~g--e~l~~dtlldgelV~-d---- 132 (404)
T COG5226 60 LNNDYLVCEKSDGVRALLLVTEEPVTGAFRGYFYDRRNNFYEVHTSFPPCSTVLKDG--EVLLEDTLLDGELVF-D---- 132 (404)
T ss_pred HhCCeEEEEccCCeEEEEEEEecccCCCcceEEEeccCceEEeccccCCcccccccC--cEEeccceecceEEE-E----
Confidence 35789999999999999988522 3688999988754 2334433221111 112356789999987 2
Q ss_pred CcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCC
Q 001045 1049 CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGD 1128 (1176)
Q Consensus 1049 ~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~ 1128 (1176)
..|...+. ++.|.+||+|.+||..+..++..+|.+.|.+-+..+ +.........+..
T Consensus 133 --~~p~~k~~------------------qlryl~fdcLa~~g~~~~~~~~s~Rl~~l~Ke~~kp---~~~~r~s~~~~~~ 189 (404)
T COG5226 133 --CLPYEKVP------------------QLRYLLFDCLAYAGMFVERMEKSERLKTLQKEDEKP---RERKRVSIEIDSG 189 (404)
T ss_pred --eccccchH------------------HHHHHHHHHhhhcceeEeecchhhHHHHhhhhhccc---Hhhhhheeecccc
Confidence 23443333 356789999999999999999999999999877322 1111111111000
Q ss_pred ----CCCCccccCHHHHHHHHHHH--HhCCCceEEEecCCCCCCcccCCCCC
Q 001045 1129 ----DNCLTSDVSLSKINNFLEEA--LHSSCEGIIVKSLDVDAGYSPSKRSD 1174 (1176)
Q Consensus 1129 ----~~~~~~~~~~eei~~~~~~a--i~~g~EGlmvK~ld~~s~Y~pGkRs~ 1174 (1176)
..+++...---.+-.+|+.. +.+|..|||.-..+ .||..|+++.
T Consensus 190 ~fpf~~s~K~M~~syg~~ki~k~ip~L~HgnDGLIFTp~~--~PY~~Gkd~~ 239 (404)
T COG5226 190 SFPFHFSVKQMLKSYGFWKIYKKIPELKHGNDGLIFTPAD--EPYSVGKDGA 239 (404)
T ss_pred ccceeeeHHHHHhhhhHHHHHhhcccccCCCCceEeccCC--CCcccCccce
Confidence 00111111112334444322 46899999999987 8999998863
|
|
| >cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00043 Score=79.45 Aligned_cols=177 Identities=19% Similarity=0.205 Sum_probs=105.6
Q ss_pred cCCCCcc-cCChhHH---HHhcc-----CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAKI-TNGVPQV---LKLFQ-----NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~~-~~~~~~~---~~~~~-----~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.-. +.+.+++ ++++. ...|+||+|+||.-+.+.+. +|. ++..|| .|+|+|....-| ..|+
T Consensus 72 ~pMlSL~k~~~~~el~~~~~r~~~~~~~~~~~~vepKiDGlsisL~Y~-~G~L~~a~TRGdG~~GeDVT~nv~~I-~~IP 149 (307)
T cd00114 72 VPMLSLDNAFDEEELRAFDERIKRFLGEEPAYVVEPKIDGLSISLRYE-NGVLVQAATRGDGTTGEDVTENVRTI-RSIP 149 (307)
T ss_pred CcCccccccCCHHHHHHHHHHHHHhcCCCCcEEEEEeccceEEEEEEE-CCEEEEEEecCCCcchhhHHhhHhhh-cccC
Confidence 5898642 3344443 23332 13699999999999999995 555 899999 788999765433 2233
Q ss_pred hhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcC----C--CCch-----hh----hcccccceEEEEEEeeeeC
Q 001045 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG----G--KDSV-----IT----IKSVKVDICVFVFDIMFAN 1089 (1176)
Q Consensus 1025 ~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~----~--~~~~-----i~----~~~~~~~v~~~vFDiL~ln 1089 (1176)
..+...+..+.+=||++.-. ..|+.+...... . ...+ +. ......++.||+|++...+
T Consensus 150 ~~i~~~~~~levRGEv~m~~-------~~F~~~n~~~~~~~~~~faNpRNaaAGsLr~ld~~~~~~r~L~f~~y~~~~~~ 222 (307)
T cd00114 150 LTLAGAPETLEVRGEVFMPK-------ADFEALNKEREERGEKPFANPRNAAAGSLRQLDPKITAKRPLRFFIYGLGEAE 222 (307)
T ss_pred hhhcCCCCeEEEEEEEEEEH-------HHHHHHHHHHHHcCCCCccChHHHHHHHHHhcCcchhhcCcceEEEEeccccc
Confidence 32211255789999999832 345555321000 0 0000 00 0112457999999986544
Q ss_pred CcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1090 GEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1090 G~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
+.. -....++.+.|+++- -..+....+ ..+.+++.++++...+ -..-|||||--+
T Consensus 223 ~~~--~~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~ 283 (307)
T cd00114 223 GLG--PKTQSEALAFLKEWG-FPVSPETRL---------------CKNIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDD 283 (307)
T ss_pred CCC--CCCHHHHHHHHHHCC-CCCCCCeEE---------------eCCHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeC
Confidence 212 247788999998864 222222211 2457888888877643 366899999754
|
DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only. |
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0003 Score=90.43 Aligned_cols=101 Identities=16% Similarity=0.022 Sum_probs=71.7
Q ss_pred eCCccEEEecCCc-C----------------CCCccEEEeccCChhhhCCcccCCC---CceEEeCHHHHHHHHHhhccC
Q 001045 44 VPNTRFLIDAFRY-A----------------ADFSVSYFLSHFHSDHYTGLSPSWS---KGIIFCSEITSRLLSQILNIN 103 (1176)
Q Consensus 44 ipg~~~liD~~~~-~----------------~~~i~avfITHaH~DHiggL~~l~~---~~pIY~s~~T~~ll~~~l~~~ 103 (1176)
-.+..+++|++.. . .-++|+++|||.|.||+||++.+.. ...||.+....
T Consensus 518 ~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~---------- 587 (755)
T PRK11539 518 RNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA---------- 587 (755)
T ss_pred ECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc----------
Confidence 4677899999731 0 0158999999999999999987543 45677654210
Q ss_pred CCceEEeCCCceEEECCEEEEEEec-CCC-----cCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 104 PKFIYPLPIKIPVLIDGCEVVLVGA-NHC-----PGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 104 ~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~-----pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
...++..|+.+..++++++.+.. .|. .+||.+.++..+ .++++|||.....
T Consensus 588 --~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~-----~~~LltGDi~~~~ 644 (755)
T PRK11539 588 --NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGK-----HSILLTGDLEAQA 644 (755)
T ss_pred --CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECC-----EEEEEEeCCChHH
Confidence 12335567888899998888843 342 468999998743 7999999985543
|
|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00024 Score=78.07 Aligned_cols=63 Identities=22% Similarity=0.059 Sum_probs=48.0
Q ss_pred CCCCCCCCCeeE---eCCccEEEecCCc-------------CCCCccEEEeccCChhhhCCcccCC----CCceEEeCHH
Q 001045 32 PPIPRTFPPSKH---VPNTRFLIDAFRY-------------AADFSVSYFLSHFHSDHYTGLSPSW----SKGIIFCSEI 91 (1176)
Q Consensus 32 p~~~r~~p~~~~---ipg~~~liD~~~~-------------~~~~i~avfITHaH~DHiggL~~l~----~~~pIY~s~~ 91 (1176)
.++-+..+|..+ ..+.++|+|.+.+ ...++++++|||.|.||+|||+++. ..++||++|.
T Consensus 14 ~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~ 93 (259)
T COG1237 14 RPGFRAEHGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPD 93 (259)
T ss_pred CCcccccCceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChH
Confidence 334456666544 4667899999822 2258999999999999999999753 3679999999
Q ss_pred HHH
Q 001045 92 TSR 94 (1176)
Q Consensus 92 T~~ 94 (1176)
...
T Consensus 94 af~ 96 (259)
T COG1237 94 AFK 96 (259)
T ss_pred HHh
Confidence 876
|
|
| >PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.6e-05 Score=86.42 Aligned_cols=178 Identities=22% Similarity=0.311 Sum_probs=100.0
Q ss_pred cCCCCc-ccCChhHH---HHh----ccCc--eEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKL----FQNK--AFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISII 1023 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~----~~~~--~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l 1023 (1176)
.|||.- .+.+.+++ +++ ++.. .|+||+|+||.-+.+++. +|. ++..|| -|+|+|....-|. .|
T Consensus 77 ~pMlSL~k~~s~eel~~w~~r~~~~~~~~~~~~~~e~KiDGlsi~L~Y~-~G~L~~a~TRGdG~~GeDvT~n~~~i~-~i 154 (315)
T PF01653_consen 77 VPMLSLDKAYSEEELRKWLKRVEKALGEEEEEFVVEPKIDGLSISLIYE-NGKLVRAATRGDGEVGEDVTHNVRTIK-SI 154 (315)
T ss_dssp S-----EEESSHHHHHHHHHHHHHHCSS-SSEEEEEEEESSEEEEEEEE-TTEEEEEEEETTSSEEEB-HHHHCTST-TS
T ss_pred ccccCccccCCHHHHHHHHHHHHHHhcccccceeEeeccceeEEEEEEe-CCEEEEEEEcCCCccchhHHHHHHHHh-cC
Confidence 589853 33444443 233 2232 599999999999999994 666 799999 6788886433321 12
Q ss_pred HhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hcCCCCc-----h-----h----hhcccccceEEEEEEeeee
Q 001045 1024 NEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ERGGKDS-----V-----I----TIKSVKVDICVFVFDIMFA 1088 (1176)
Q Consensus 1024 ~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r~~~~~-----~-----i----~~~~~~~~v~~~vFDiL~l 1088 (1176)
+..+...+..+.+=||++.- ...|..+..+ ....... + + .......++.|++|++.+.
T Consensus 155 P~~i~~~p~~~eVRGEv~m~-------~~~F~~ln~~~~~~~~~~faNpRN~aAGsLr~~d~~~~~~r~L~f~~y~~~~~ 227 (315)
T PF01653_consen 155 PLRIPEKPGRLEVRGEVYMS-------KSDFEKLNEEREEEGEKPFANPRNAAAGSLRQKDPSITAERKLSFFAYGIGEP 227 (315)
T ss_dssp -SB-SSSSSEEEEEEEEE---------HHHHHHHHHHHHHTTS---SSHHHHHHHHHTSSSHHHHHTS--EEEEEEEEEE
T ss_pred chhhccCCcceEEEEEEEEe-------hhhHHHHHHHHHHhccchhhhhhHHHHHhhhhccchhhhcCeeEEEEEEeccc
Confidence 32222225788999999972 3467776521 1100000 0 0 0011245799999999998
Q ss_pred CCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEecCC
Q 001045 1089 NGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKSLD 1162 (1176)
Q Consensus 1089 nG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ld 1162 (1176)
+| .+--....++.+.|+++- -+....+.+ ..+.+++.++++...+. ..-|||||--+
T Consensus 228 ~~-~~~~~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~y~iDGiVikvn~ 290 (315)
T PF01653_consen 228 EG-DLGFNTQSERLQFLKEWG-FPVNPYIRF---------------CKSIEEVEEYIEEWEERREELPYPIDGIVIKVND 290 (315)
T ss_dssp TT-STT-SBHHHHHHHHHHTT---B-TTEEE---------------ESSHHHHHHHHHHHHHHGCCSSS-EEEEEEEESB
T ss_pred cc-ccChHHHHHHHHHHHHcC-CCCCcceEe---------------cCCHHHHHHHHHHHHhhhhccccccCcEEEEecC
Confidence 87 343456788888888764 222222221 24678888888877653 45799999754
|
It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A .... |
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00055 Score=77.86 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=73.8
Q ss_pred eCCccEEEecCC-------------cCCCCccEEEeccCChhhhCCcccCCC-----CceEEeCHHHHHHHHHhhccCCC
Q 001045 44 VPNTRFLIDAFR-------------YAADFSVSYFLSHFHSDHYTGLSPSWS-----KGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 44 ipg~~~liD~~~-------------~~~~~i~avfITHaH~DHiggL~~l~~-----~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
.++...++|.+. .+..+||.+++||+|.||+||+..+.. .+-||.+..+..... +.-...
T Consensus 61 ~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~--~~~~~~ 138 (293)
T COG2333 61 SEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFV--LRDAGI 138 (293)
T ss_pred eCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhh--hhhcCC
Confidence 455567777764 112579999999999999999987543 222333333222222 111122
Q ss_pred ceEEeCCCceEEECCEEEEEEecC-C-----CcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGAN-H-----CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a~-H-----~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
.+.....|+.+.++++.++++.-. + .-.||++.++..+ .+++.|||......
T Consensus 139 ~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~-----~s~LlTGD~e~~~E 196 (293)
T COG2333 139 PVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGG-----NSFLLTGDLEEKGE 196 (293)
T ss_pred ceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCC-----eeEEEecCCCchhH
Confidence 356677788999999888877543 4 2358999999854 69999999865443
|
|
| >PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0025 Score=78.36 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=106.0
Q ss_pred cCCCCc-ccCChhHHHHhcc-CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCCCC
Q 001045 959 KPMLAK-ITNGVPQVLKLFQ-NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~~~~~~-~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
.|||.- .+.+.+++.+=.. ...|+||+|+||.=+-+.+. +|. ++..|| -|+|+|...--| ..++..+...+
T Consensus 96 ~PMlSL~k~~s~eel~~w~~~~~~~~vepKiDGlsisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nv~~I-~~IP~~l~~~~ 173 (562)
T PRK08097 96 VAHTGVKKLADKQALARWMAGRSDLWVQPKVDGVAVTLVYR-DGKLVQAISRGNGLKGEDWTAKARLI-PAIPQQLPGAL 173 (562)
T ss_pred CCcccccccCCHHHHHHHHhhccceEEEEecccEEEEEEEE-CCEEEEEEecCCCccchhHHhhHhhh-cccchhhcCCC
Confidence 499863 3445555432111 12699999999999999995 554 789999 788888754322 22333332224
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhh-----h------hcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHH
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSS-----R------ERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQ 1100 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~-----R------~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~e 1100 (1176)
..+.+-||++.-. ..|+.... | .|.. +..+ ...++.||+|++. +| .....+
T Consensus 174 ~~levRGEv~m~~-------~~F~~~~~g~aNPRN~AAGsLr~~-d~~~----~~r~L~~f~y~~~--~~----~~t~~e 235 (562)
T PRK08097 174 ANLVLQGELFLRR-------EGHIQQQMGGINARAKVAGLMMRK-DPSP----TLNQIGVFVWAWP--DG----PASMPE 235 (562)
T ss_pred CeEEEEEEEEEeH-------HHHHHHhcCcCCchHHHhHHHhhc-CcHh----hhccceEEEEECC--CC----CCCHHH
Confidence 4689999999832 35654321 1 0111 1111 1457999999973 44 246788
Q ss_pred HHHHHHHhhcccCCCcEEEeE-EEEEcCCCCCCccccCHHHHHHHHHHHH----hCCCceEEEecCCCCCCcccC--CCC
Q 001045 1101 RRKYLKDLFYDEKMGYFQYAK-EMTVEGDDNCLTSDVSLSKINNFLEEAL----HSSCEGIIVKSLDVDAGYSPS--KRS 1173 (1176)
Q Consensus 1101 Rr~lL~~~~~~~~~~~i~~~~-~~~v~~~~~~~~~~~~~eei~~~~~~ai----~~g~EGlmvK~ld~~s~Y~pG--kRs 1173 (1176)
+.+.|+++- -+ ..+ .... ..+.+++.++++... .-.--|||+|--+ -.|..| .|.
T Consensus 236 ~l~~L~~~G-F~------v~~~~~~~---------~~~~~~i~~~~~~~~r~~l~y~iDGiViKvn~--~~~~~~~ts~~ 297 (562)
T PRK08097 236 RLAQLATAG-FP------LTQRYTHP---------VKNAEEVARWRERWYRAPLPFVTDGVVVRQAK--EPPGRYWQPGQ 297 (562)
T ss_pred HHHHHHHCC-CC------cCccceEe---------eCCHHHHHHHHHHHhhccCCCCCCcEEEEecC--HHHHhhccCCC
Confidence 888888764 12 221 1110 235677777776543 2367899999755 344332 345
Q ss_pred CCC
Q 001045 1174 DSW 1176 (1176)
Q Consensus 1174 ~~W 1176 (1176)
..|
T Consensus 298 PrW 300 (562)
T PRK08097 298 GEW 300 (562)
T ss_pred CCc
Confidence 555
|
|
| >smart00532 LIGANc Ligase N family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00072 Score=81.17 Aligned_cols=178 Identities=19% Similarity=0.189 Sum_probs=105.2
Q ss_pred cCCCCc-ccCChhHH---HHhccC-----ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQN-----KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~~-----~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.- .+.+.+++ ++++.. -.|+||+|+||.-+-+.+. +|. ++..|| .|+|+|....-|.. ++
T Consensus 74 ~pMlSL~k~~~~~el~~f~~~~~~~~~~~~~~~~epKiDGlsisL~Ye-~G~l~~a~TRGDG~~GeDVT~nv~~i~~-iP 151 (441)
T smart00532 74 VPMLSLDNAFDEDELRAFDERIEKALGSPFAYVVEPKIDGLSVSLLYE-NGKLVQAATRGDGTVGEDVTQNVKTIRS-IP 151 (441)
T ss_pred CcccCccccCCHHHHHHHHHHHHHhcCCCceEEEEEecccEEEEEEEE-CCEEEEEEecCCCCcceehhhhhhhhcC-cC
Confidence 499864 33445543 223211 2699999999999999995 666 899999 88999976543321 22
Q ss_pred hhcC-CCCCCeEEEEEEEEEecCCCCcccChHHHhhhhc--C----CCCch-----hh----hcccccceEEEEEEeeee
Q 001045 1025 EFCK-PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRER--G----GKDSV-----IT----IKSVKVDICVFVFDIMFA 1088 (1176)
Q Consensus 1025 ~~~~-~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r--~----~~~~~-----i~----~~~~~~~v~~~vFDiL~l 1088 (1176)
..+. ..+..+.+-||++.- ...|+.|-.... . ....+ +. ......++.||+|++...
T Consensus 152 ~~i~~~~p~~leiRGEv~~~-------~~~F~~ln~~~~~~g~~~faNpRN~aAG~lr~ld~~~~~~r~L~~~~y~~~~~ 224 (441)
T smart00532 152 LRLSGDVPERLEVRGEVFMP-------KEDFLALNEELEEEGEKPFANPRNAAAGSLRQLDPRITAKRKLRAFFYGLGTG 224 (441)
T ss_pred hhhcccCCCeEEEEceEEEE-------HHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcCchhhhhccceEEEEEcccC
Confidence 2111 123568999999983 235666532100 0 00000 00 011234799999998644
Q ss_pred CCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1089 NGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1089 nG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
++... .....++.+.|+++- -... +.... ..+.+++.++++...+ -.--|||+|--+
T Consensus 225 ~~~~~-~~t~~e~l~~L~~~G-F~v~------~~~~~---------~~~~~ei~~~~~~~~~~r~~l~y~iDGiViKvn~ 287 (441)
T smart00532 225 EELFL-PKTQSEALKWLKELG-FPVS------PHTRL---------CKNADEVIEYYEEWEEKRAELPYEIDGVVVKVDD 287 (441)
T ss_pred CCCCC-ccCHHHHHHHHHHCC-CCCC------CCeEe---------eCCHHHHHHHHHHHHHhcccCCCCcCcEEEEecC
Confidence 43211 246788888888763 1122 21111 2457888888887655 366899999755
|
|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0042 Score=67.66 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=70.8
Q ss_pred EEeCCCceEEECCEEEEEEec-CCCcC-c-----eEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhcc--CCCcEE
Q 001045 108 YPLPIKIPVLIDGCEVVLVGA-NHCPG-A-----VQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEF--AGCDAV 178 (1176)
Q Consensus 108 ~~l~~~~~~~i~~~~Vt~~~a-~H~pG-S-----~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~--~~vDvL 178 (1176)
.....|++|++|+..|.+-+. -|-+. + +|+.+...+ .+|+|+.|.-- ...+..+..+ .++|++
T Consensus 134 ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~-----~~i~faSDvqG---p~~~~~l~~i~e~~P~v~ 205 (304)
T COG2248 134 IEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGK-----SSIVFASDVQG---PINDEALEFILEKRPDVL 205 (304)
T ss_pred eEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCC-----eEEEEcccccC---CCccHHHHHHHhcCCCEE
Confidence 355678899999999998775 88553 3 455554432 69999999841 1222221111 689999
Q ss_pred EEeC--CCCCC-CCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--c---chHHHHHHHHHHcCCcEEE
Q 001045 179 FLDT--TYCNP-KFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--I---GKEKILIEIFKKCGRKVCV 248 (1176)
Q Consensus 179 I~Es--Ty~~~-~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--l---GR~q~ll~ia~~~g~~I~v 248 (1176)
|+++ ||... .+.....+..++.+..++.+. + .+||+=++-- . .+.+++...++..|..|..
T Consensus 206 ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~--------~-~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~T 274 (304)
T COG2248 206 IIGGPPTYLLGYRVGPKSLEKGIRNLERIIEET--------N-ATLVIDHHLLRDKNYREFLEELFERAEKAGVEVAT 274 (304)
T ss_pred EecCCchhHhhhhcChHHHHHHHHHHHHHHHhC--------c-ceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeee
Confidence 9997 43321 111123344455554444433 2 3434333322 2 2345666677777877765
|
|
| >cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=68.39 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=100.4
Q ss_pred CceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcC--CCCCCeEEEEEEEEEecCCCCcccChH
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCK--PAAGTFILDAEVVAIDRKNGCKIMSFQ 1055 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~--~~~~~~ILDGElVa~d~~~g~~~~pFq 1055 (1176)
...|++=+-==|.||.|... +|.+.+++|+|.-+. .|+.. ++.--. .....+|||+-. +.
T Consensus 20 ~~~w~~~~~P~G~R~lvv~~-~g~t~~~~r~g~~~~-~f~s~---lP~g~~~~~~~g~tILDci~---~~---------- 81 (186)
T cd09232 20 SEEWLVVPCPVGKRCLVVAS-KGKTVARSKNGRTLH-RFSSA---LPGGSRKTSNSGYTILDCIY---NE---------- 81 (186)
T ss_pred CcceEEEECcCceEEEEEEe-CCEEEEEeCCCCEEE-ecccC---CCCCCcCCCCCCCEEEEEec---CC----------
Confidence 35788888888999999995 999999999998752 22111 111000 012345555542 11
Q ss_pred HHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCC---------CcEEEeEEEEEc
Q 001045 1056 ELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM---------GYFQYAKEMTVE 1126 (1176)
Q Consensus 1056 ~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~---------~~i~~~~~~~v~ 1126 (1176)
....|+|+|||.+||.++.+.++..|...|++-+.+... -.|...+...+
T Consensus 82 --------------------~~~~yyVlDii~w~g~~l~d~~~~~Rf~wl~skl~E~~~~~~~~~~~~~~f~~~p~~~~- 140 (186)
T cd09232 82 --------------------DDRTYYVLDVLCWNGHPLYDCETEFRFFWLRSKLEELPELDEPSEKNPFRFVPLPYFPC- 140 (186)
T ss_pred --------------------CCCEEEEEEEeeeCCcccccCCcchhHHHHHhhCCCccccccccccCCceEEecCcccC-
Confidence 124799999999999999999999999999998832211 13444444432
Q ss_pred CCCCCCccccCHHHHHHHHHHHH---hCCCceEEEecCCCCCCcccCCCCC
Q 001045 1127 GDDNCLTSDVSLSKINNFLEEAL---HSSCEGIIVKSLDVDAGYSPSKRSD 1174 (1176)
Q Consensus 1127 ~~~~~~~~~~~~eei~~~~~~ai---~~g~EGlmvK~ld~~s~Y~pGkRs~ 1174 (1176)
+.+.+++.|...+ ..--.||..=..+ +.|++| ++.
T Consensus 141 ----------~~~~l~~~~~~~~~~~~~e~DGLlFyhk~--~~Y~~G-~tP 178 (186)
T cd09232 141 ----------TKESLQSAYSGPLNDDPYELDGLLFYHKE--SHYTPG-STP 178 (186)
T ss_pred ----------cHHHHHHHHhcccccCCCCCceEEEEeCC--CcccCc-CCC
Confidence 2367888888888 8888999998877 789999 443
|
Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain. |
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=78.35 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=104.0
Q ss_pred cCCCCc-ccCChhHH---HHh----ccCceEEEEEecceeEEEEEEeeCCeEEEEcC----CCccCCCCchhHHHHHHhh
Q 001045 959 KPMLAK-ITNGVPQV---LKL----FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR----NGDETTSRFPDLISIINEF 1026 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~----~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR----~g~d~T~~ypdl~~~l~~~ 1026 (1176)
.|||.- .+.+.+++ .++ ++...|+||+|+||.=+-+.+.+|.=++..|| .|+|+|.....| ..|+..
T Consensus 104 ~pMlSL~k~~~~~el~~f~~r~~~~~~~~~~~~epKiDGlaisL~Ye~G~L~~a~TRGDG~~GeDVT~nv~~I-~~IP~~ 182 (689)
T PRK14351 104 APMLSIDQSGEADDVREFDERVRREVGAVEYVCEPKFDGLSVEVVYEDGEYQRAATRGDGREGDDVTANVRTI-RSVPQK 182 (689)
T ss_pred CcccccCccCCHHHHHHHHHHHHHhcCCceEEEEEecccEEEEEEEECCEEEEEEecCCCCcceeHhhhhhhh-cccchh
Confidence 489864 23344544 222 23346999999999999999953334889999 789999764432 222222
Q ss_pred cC-CCCCCeEEEEEEEEEecCCCCcccChHHHhhh-h----------cCCCCchhhh----cccccceEEEEEEeeeeCC
Q 001045 1027 CK-PAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-E----------RGGKDSVITI----KSVKVDICVFVFDIMFANG 1090 (1176)
Q Consensus 1027 ~~-~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~----------r~~~~~~i~~----~~~~~~v~~~vFDiL~lnG 1090 (1176)
+. ..+..+++=||++.-. ..|+.+... . |......+.. .....++.||+|++...++
T Consensus 183 l~~~~p~~levRGEv~m~~-------~~F~~lN~~~~~~g~~~faNpRN~aAGslR~ldp~~~~~r~L~f~~y~~~~~~~ 255 (689)
T PRK14351 183 LRGDYPDFLAVRGEVYMPK-------DAFQAYNRERIERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFDVLDASE 255 (689)
T ss_pred hcccCCCeEEEEEEEEEEH-------HHHHHHHHHHHHcCCCCcCCHHHHHhhHhhccChHHHhcCCceEEEEecccCCC
Confidence 21 1244688999999832 356665421 0 0000000000 1123579999999865554
Q ss_pred cccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHH------hCCCceEEEecCC
Q 001045 1091 EQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEAL------HSSCEGIIVKSLD 1162 (1176)
Q Consensus 1091 ~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai------~~g~EGlmvK~ld 1162 (1176)
. .....++.+.|.++- -+ +++.... ..+.+++.++++... .-..-|||+|--+
T Consensus 256 ~---~~t~~e~l~~L~~~G-F~------v~~~~~~---------~~~~~~~~~~~~~~~~~R~~l~y~iDGiViKvn~ 314 (689)
T PRK14351 256 L---FDSHWEELERFPEWG-LR------VTDRTER---------VDDIDDAIAYRDRLLAARDDLNYEIDGVVIKVDD 314 (689)
T ss_pred C---CCCHHHHHHHHHHCC-CC------cCCceEe---------eCCHHHHHHHHHHHHHhhhcCCCCCceEEEEeCC
Confidence 1 246778888888764 12 2222111 245677777776553 3466799999754
|
|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0026 Score=80.24 Aligned_cols=177 Identities=18% Similarity=0.218 Sum_probs=104.2
Q ss_pred cCCCCcc-cCChhHH---HHhccC-----ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAKI-TNGVPQV---LKLFQN-----KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~~-~~~~~~~---~~~~~~-----~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.-. +.+.+++ ++++.. -.|+||+|+||.=+.+.+. +|. ++..|| -|+|+|.....| ..++
T Consensus 67 ~pMlSL~k~~~~~el~~~~~r~~~~~~~~~~~~~epKiDGlaisL~Ye-~G~L~~a~TRGDG~~GeDvT~nv~~I-~~iP 144 (652)
T TIGR00575 67 TPMLSLDNAFDEDELAAFIKRIRRQLGLKVEYVVEPKIDGLSVSLTYE-NGVLVRALTRGDGTVGEDVTANVRTI-RSIP 144 (652)
T ss_pred CcCcCccccCCHHHHHHHHHHHHHhcCCCceEEEEEeccceEEEEEEE-CCEEEEEEecCCCccchhHhhhhhhh-cccc
Confidence 4898642 3344443 233321 2599999999999999995 665 889999 789999764333 2233
Q ss_pred hhcC--CCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hc-C----CCCch-----hh----hcccccceEEEEEEeee
Q 001045 1025 EFCK--PAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ER-G----GKDSV-----IT----IKSVKVDICVFVFDIMF 1087 (1176)
Q Consensus 1025 ~~~~--~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r-~----~~~~~-----i~----~~~~~~~v~~~vFDiL~ 1087 (1176)
..+. +.+..+.+-||++.-. ..|+.+-.. .. . ....+ +. ......++.||+|++..
T Consensus 145 ~~i~~~~~p~~levRGEv~m~~-------~~F~~~N~~~~~~g~~~faNpRN~aAGslr~ld~~~~~~r~L~~~~y~~~~ 217 (652)
T TIGR00575 145 LRLAGDNPPERLEVRGEVFMPK-------EDFEALNEERREQGEKPFANPRNAAAGSLRQLDPRITAKRKLRFFAYGLGE 217 (652)
T ss_pred hhhcCCCCCceEEEEEEEEEEH-------HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHcCCchhhhcCccEEEEEeccc
Confidence 3221 1245689999999832 356655321 00 0 00000 00 01124579999999853
Q ss_pred eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecC
Q 001045 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSL 1161 (1176)
Q Consensus 1088 lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~l 1161 (1176)
.. ........++.+.|+++- -+......+ ..+.+++.+++++..+ -.--|||+|--
T Consensus 218 ~~--~~~~~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn 279 (652)
T TIGR00575 218 GL--ELPDATQYEALAWLKKWG-FPVSPHIRL---------------CDSIEEVLEYYREIEEKRDSLPYEIDGVVVKVD 279 (652)
T ss_pred cC--CCCCCCHHHHHHHHHHCC-CCCCCCeEe---------------eCCHHHHHHHHHHHHHhhhcCCCCCCcEEEEec
Confidence 22 211247788888888763 122222111 2467888888876643 36689999975
Q ss_pred C
Q 001045 1162 D 1162 (1176)
Q Consensus 1162 d 1162 (1176)
+
T Consensus 280 ~ 280 (652)
T TIGR00575 280 D 280 (652)
T ss_pred C
Confidence 4
|
The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed. |
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0078 Score=76.04 Aligned_cols=178 Identities=20% Similarity=0.263 Sum_probs=104.8
Q ss_pred cCCCCc-ccCChhHH---HHhccC------ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQN------KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISII 1023 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~~------~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l 1023 (1176)
.|||.- .+.+.+++ ++++.. ..|+||+|+||.=+.+.+. +|. ++..|| -|+|+|...--| ..|
T Consensus 78 ~pMlSL~k~~~~~el~~w~~r~~~~~~~~~~~~~~epKiDGlsisL~Y~-~G~L~~a~TRGDG~~GeDvT~n~~~I-~~I 155 (665)
T PRK07956 78 VPMLSLDNAFSEEELRAFDKRVRKRLPDPPLTYLCELKIDGLAVSLLYE-NGVLVRAATRGDGTTGEDITANVRTI-RSI 155 (665)
T ss_pred CcCcCccccCCHHHHHHHHHHHHHhcCCCCcceEEEEecccEEEEEEEE-CCEEEEEEecCCCccchhHhhhhhhh-ccC
Confidence 489864 23344443 233321 2599999999999999995 554 789999 789999754322 122
Q ss_pred HhhcC-CCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcC-C-----CCch-----hh----hcccccceEEEEEEeee
Q 001045 1024 NEFCK-PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG-G-----KDSV-----IT----IKSVKVDICVFVFDIMF 1087 (1176)
Q Consensus 1024 ~~~~~-~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~-~-----~~~~-----i~----~~~~~~~v~~~vFDiL~ 1087 (1176)
+..+. ..+..+++-||++.- ...|+.+..+... + ...+ .. ......++.||+|++..
T Consensus 156 P~~l~~~~p~~levRGEv~m~-------~~~F~~lN~~~~~~g~~~faNpRNaaAGslr~ld~~~~~~r~L~f~~y~~~~ 228 (665)
T PRK07956 156 PLRLHGNEPERLEVRGEVFMP-------KADFEALNEERREEGEKPFANPRNAAAGSLRQLDPKITAKRPLSFFAYGVGE 228 (665)
T ss_pred ChhhcccCCCeEEEEEEEEEE-------HHHHHHHHHHHHhcCCCcccChHHHHhhhhhccChHHHhcCCCEEEEEeccc
Confidence 22221 224568999999983 2356665432100 0 0000 00 01124579999999864
Q ss_pred eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecC
Q 001045 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSL 1161 (1176)
Q Consensus 1088 lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~l 1161 (1176)
.++ ........++.+.|+++- -+......+ ..+.+++.++++...+ -..-|||+|--
T Consensus 229 ~~~-~~~~~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn 291 (665)
T PRK07956 229 VEG-GELPDSQSEALEFLKAWG-FPVNPYRKL---------------CTSIEEVLAFYEEIEEERHDLPYDIDGVVIKVD 291 (665)
T ss_pred ccC-CCCCCCHHHHHHHHHHCC-CCcCCceEe---------------eCCHHHHHHHHHHHHHhhccCCCCCCcEEEEec
Confidence 431 111246788888888864 122211111 2457888888876653 46689999975
Q ss_pred C
Q 001045 1162 D 1162 (1176)
Q Consensus 1162 d 1162 (1176)
+
T Consensus 292 ~ 292 (665)
T PRK07956 292 D 292 (665)
T ss_pred C
Confidence 4
|
|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0098 Score=74.94 Aligned_cols=178 Identities=16% Similarity=0.246 Sum_probs=102.7
Q ss_pred cCCCCc-ccCChhHH---HHhcc------C--ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQ------N--KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLIS 1021 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~------~--~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~ 1021 (1176)
.|||.- .+.+.+++ .+++. + ..|+||+|+||.-+-+.+. +|. ++..|| .|+|+|...--| .
T Consensus 78 ~pMlSL~k~~~~~el~~~~~r~~~~~~~~~~~~~~~~epKiDGlaisL~Ye-nG~L~~a~TRGDG~~GEDVT~n~~~I-~ 155 (669)
T PRK14350 78 FPILSLDKVYDLKLLKLWIEKMDLENSNLGFDFGISVEPKIDGCSIVLYYK-DGILEKALTRGDGRFGNDVTENVRTI-R 155 (669)
T ss_pred CccccccccCCHHHHHHHHHHHHHhhccCCCCceEEEEEecccEEEEEEEE-CCEEEEEEecCCCCcchhHhhhhhhh-c
Confidence 499863 33344443 23332 1 2599999999999999995 555 789999 789998764322 2
Q ss_pred HHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCC--CCch-----hh----hcccccceEEEEEEeeeeCC
Q 001045 1022 IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG--KDSV-----IT----IKSVKVDICVFVFDIMFANG 1090 (1176)
Q Consensus 1022 ~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~--~~~~-----i~----~~~~~~~v~~~vFDiL~lnG 1090 (1176)
.++..+. ....+.+-||++.- ...|+.|.....+. .+.+ +. ......++.||+|++...++
T Consensus 156 ~IP~~l~-~~~~levRGEv~m~-------~~~F~~lN~~~~~~faNpRNaaAGsLr~~d~~~~a~r~L~f~~y~~~~~~~ 227 (669)
T PRK14350 156 NVPLFID-EKVELVLRGEIYIT-------KENFLKINKTLEKPYTNARNLASGILRRIDSREVANFPLDIFVYDILYSSL 227 (669)
T ss_pred ccchhcC-CCceEEEEEEEEee-------HHHHHHHHHhhhccCCChhHHHHHHHHccCchhhhcCceEEEEEEcccCCC
Confidence 2333221 23568999999983 23566653221100 0000 00 01124479999999853222
Q ss_pred cccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHH------hCCCceEEEecCC
Q 001045 1091 EQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEAL------HSSCEGIIVKSLD 1162 (1176)
Q Consensus 1091 ~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai------~~g~EGlmvK~ld 1162 (1176)
. ..+..++.+.|+++- -+..+...+.. ..++.+++.+++++.. .-..-|||+|--+
T Consensus 228 ~---~~t~~e~l~~L~~~G-F~v~~~~~~~~------------~~~~~~e~~~~~~~~~~~R~~l~y~iDGiViKvn~ 289 (669)
T PRK14350 228 E---LKTNHDAFDKLKKFG-FKVNPFCRFFD------------GKNSIEEILNYVKDIEKKRNSFEYEIDGVVLKVSD 289 (669)
T ss_pred C---CCCHHHHHHHHHHCC-CCCCcceEEEc------------CCCcHHHHHHHHHHHHHHHhcCCCCCCcEEEEecC
Confidence 1 236778888888764 22222222211 1134677777776543 2456899999754
|
|
| >PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0061 Score=64.93 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=64.9
Q ss_pred ceEEEEEecceeEEEEEEeeCCeEEEEcCCCcc-----C------CCCchhHHHHH---Hhhc----CCCCCCeEEEEEE
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE-----T------TSRFPDLISII---NEFC----KPAAGTFILDAEV 1040 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d-----~------T~~ypdl~~~l---~~~~----~~~~~~~ILDGEl 1040 (1176)
++|.+.+|+||--+.+.+..++.+++.+|++.. + ...|......+ .... .....+++|=||+
T Consensus 1 ~e~vvtEKldGtn~~i~~~~~~~~~~~~R~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GE~ 80 (186)
T PF09414_consen 1 REVVVTEKLDGTNFSIYFDNDGRVRFQSRSHILDPNEDFFGYQSGDNRYWAQARWLFELLKLAELASELLPENIIIYGEL 80 (186)
T ss_dssp SEEEEEEE-SSEEEEEEEEECTCEEEEETTEE--TT---TTCHHHHHHCHHHHHHHHHHHHHHCCEC----SEEEEEEEE
T ss_pred CeEEEEEEeCCccEEEEEeCCCceeEeccccccCccccccccccchHHHHHHHHHHHhhhhhhhhcccccceEEEEEEEe
Confidence 369999999999999999767779999999932 1 12222222111 1111 1256789999999
Q ss_pred EEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCc-ccccCCHHHHHHHHHHh
Q 001045 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGE-QLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1041 Va~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~-~Ll~~Pl~eRr~lL~~~ 1108 (1176)
++|-+.- + + +.. ...-+..|++|||...+.. ...=+++.+++.+++.+
T Consensus 81 ~G~~~~I----------q----~----~~~--~~~~~~~F~~Fdi~~~~~~~~~~~l~~~~~~~~~~~~ 129 (186)
T PF09414_consen 81 VGAKPSI----------Q----K----NRY--QLDPPKDFYVFDIYDIDEQGEIRYLSWDEVREFAEEL 129 (186)
T ss_dssp ECEECTT----------C----S----S------ECCCEEEEEEEEEEETCCGEEE-HHHHHHHHHCCC
T ss_pred eeecccc----------c----c----ccc--ccCCCceEEEEEEEEcCCCCeeEECCHHHHHHHHHHC
Confidence 9864211 0 0 000 0012578999999888643 22445777777777654
|
RNA ligase enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes []. Members of this RNA ligase family include: RNA editing ligase 1 (REL1) , which is essential for RNA editing and may be active in U-deletion editing [, , ]. RNA editing ligase 2 (REL2), which may be active in U-insertion editing []. RnlB RNA ligase 2 (or Rnl2), second RNA ligase of Enterobacteria phage T4 (Bacteriophage T4); unlike RNA ligase 1, RnlB prefers doule stranded substrates [, ]. ; PDB: 2HVS_B 2HVR_A 1S68_A 2HVQ_A 1XDN_A. |
| >TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.036 Score=63.79 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=65.6
Q ss_pred ccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC-CCc-------hhHHHHHH---hhcC----CCCCCeEEEEEE
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT-SRF-------PDLISIIN---EFCK----PAAGTFILDAEV 1040 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T-~~y-------pdl~~~l~---~~~~----~~~~~~ILDGEl 1040 (1176)
+.+..|.+.+|.||-..-|.++.++.+++.||++.--- +.| +++...++ +.+. ....++++=||+
T Consensus 22 l~~~ewvatEKlhGaNfsi~~~~~~~i~~akR~~~l~~~e~f~G~~~i~~~l~~~~~~l~~~l~~~~~~~~~~v~IyGEl 101 (325)
T TIGR02307 22 LGLTEWVAREKIHGTNFSIIIERDFKVTCAKRTGIILPNEDFFGYHILIKNYTASVKAIQDILETKAIIVVVSVQVFGEL 101 (325)
T ss_pred cCCceEEEEEEecCcceEEEEeCCceEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEEEe
Confidence 34679999999999999999853338999999954321 111 22322222 2221 245789999999
Q ss_pred EEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHh
Q 001045 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1041 Va~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
++|.-.+. .. .. +..|++|||.+....+-.=+++.+-.+....+
T Consensus 102 ~G~~~q~~--~~---------------------Y~-~~~fyaFdI~~~~~~~~~~L~~d~~~e~~~~~ 145 (325)
T TIGR02307 102 AGPGYQKP--VV---------------------YS-DKDFYAFDIKYTETSDDVTLVDDYMMESFCNV 145 (325)
T ss_pred ecCcccCc--cc---------------------cc-cccEEEEEEEEeccCcceEecHHHHHHHHHHc
Confidence 99743211 00 11 36799999955422123345666555555443
|
Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins. |
| >PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0059 Score=49.46 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=34.7
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
++.|.||+.|..- ..+.|+.+|+...+|++.|++.||+++++
T Consensus 1 ~e~i~~F~~iTg~---~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 1 DEKIAQFMSITGA---DEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHHH-S---SHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CHHHHHHHHHHCc---CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3679999999953 56999999999999999999999997664
|
|
| >KOG0814 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=59.89 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=59.0
Q ss_pred CccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEE
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFL 138 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~fl 138 (1176)
++.+-+-||.|.||+-|-..+..-. |..+.++...-|-.. -.-++.|+.++||++.+....+ ||.+|++-|.
T Consensus 57 ~LiYa~NTH~HADHiTGtg~Lkt~~-----pg~kSVis~~SGakA--D~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV 129 (237)
T KOG0814|consen 57 DLIYALNTHVHADHITGTGLLKTLL-----PGCKSVISSASGAKA--DLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYV 129 (237)
T ss_pred eeeeeecceeecccccccchHHHhc-----ccHHHHhhhcccccc--ccccCCCCEEEEccEEEEEecCCCCCCceEEEE
Confidence 4556688999999999876543211 123333333333222 2347889999999999988887 9999999988
Q ss_pred EEEcCCCCcccEEEEECCC
Q 001045 139 FKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 139 ie~~~~~G~~~~IlYTGDf 157 (1176)
... .+.+||||.
T Consensus 130 ~~d-------~~~aFTGDa 141 (237)
T KOG0814|consen 130 EHD-------LRMAFTGDA 141 (237)
T ss_pred ecC-------cceeeecce
Confidence 764 479999994
|
|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.08 Score=65.67 Aligned_cols=155 Identities=22% Similarity=0.259 Sum_probs=104.9
Q ss_pred ceEEEEEecceeEEEEEEeeCCe-EEEEcCC----CccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGT-VRIFSRN----GDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR~----g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
..|+||+|.||.=+-+.+. +|. ++--||. |+|+|....-|. .|+.-+...+..+-+=||++.- ...
T Consensus 109 ~~y~~EpKiDGlsisL~Ye-nG~Lv~aaTRGdG~~GEDiT~NvrtI~-~IP~~l~~~p~~lEVRGEvfm~-------k~~ 179 (667)
T COG0272 109 VEYVVEPKIDGLAISLVYE-NGKLVRAATRGDGTTGEDITANVRTIR-SIPLKLPGAPAVLEVRGEVFMP-------KED 179 (667)
T ss_pred cceEEEeecceEEEEEEEE-CCEEEEeeccCCCccccchhhhhhhHh-hhhhhccCCCceEEEEeEEEEe-------HHH
Confidence 4799999999999999994 554 7888885 789998765554 4554443346788999999983 246
Q ss_pred hHHHhhhhc--C----------------CCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC
Q 001045 1054 FQELSSRER--G----------------GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115 (1176)
Q Consensus 1054 Fq~L~~R~r--~----------------~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~ 1115 (1176)
|+.+..... + ..+..+ ..+.++.+|++.+-+..+. ..-.+..++.+.|+++- -+...
T Consensus 180 F~~lN~~~~~~g~~~faNpRNaAAGsLRqlD~~i---ta~R~L~~f~y~~~~~~~~-~~~~t~~e~l~~L~~~G-F~v~~ 254 (667)
T COG0272 180 FEALNEEREEEGEKPFANPRNAAAGSLRQLDPKI---TAKRKLGFFIYAVGDGEEG-LLADTQSERLAFLKAWG-FPVNP 254 (667)
T ss_pred HHHHHHHHHHhCCCCcCChhhhhhhhhhccCHHH---HhcCCceEEEEeCCccCCC-CCccCHHHHHHHHHHcC-CCCCc
Confidence 777753311 0 001111 1245789999998766554 66677889999998874 12111
Q ss_pred cEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEecCC
Q 001045 1116 YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKSLD 1162 (1176)
Q Consensus 1116 ~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ld 1162 (1176)
... ...+.+++.++++...+. --.|+|+|--+
T Consensus 255 ~~~---------------~~~~~~ev~~~~~~~~~~R~~L~y~IDGvViKvn~ 292 (667)
T COG0272 255 YTR---------------LCKNADEVLAFYEEWEKKRASLPYDIDGVVIKVND 292 (667)
T ss_pred Hhh---------------hcCCHHHHHHHHHHHHhhcccCCCccceEEEEecc
Confidence 111 145789999999887764 45699999754
|
|
| >PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.037 Score=58.09 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=61.5
Q ss_pred CCCCeeE-eCCccEEEecCCcCC---------CCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCC
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYAA---------DFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~~---------~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
...|+.+ .|+.+++||.-.... ..+.+|+||| .||+..-.... ...+||++..-++. +.+..
T Consensus 22 dfng~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~~a~i~~p~~d~~~----~p~~~ 95 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQTGAKIYGPAADAAQ----FPLAC 95 (199)
T ss_dssp EEEEEEE--TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--EEEEEGGGCCC-----SS--
T ss_pred CceeEEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHhCCeeeccHHHHhh----CCCCC
Confidence 3445556 799999999964332 4789999996 68987644321 25688888776522 22222
Q ss_pred CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
-+.+..|+ ..+++++|..++-.|.||.++++++. ++++|||.-..
T Consensus 96 --D~~l~dge-~i~~g~~vi~l~G~ktpGE~ALlled--------~vLi~GDl~~~ 140 (199)
T PF14597_consen 96 --DRWLADGE-EIVPGLWVIHLPGSKTPGELALLLED--------RVLITGDLLRS 140 (199)
T ss_dssp --SEEE-TT--BSSTTEEEEEE-SSSSTTEEEEEETT--------TEEEESSSEEB
T ss_pred --ccccccCC-CccCceEEEEcCCCCCCceeEEEecc--------ceEEecceeee
Confidence 13444554 33588999999999999999999973 59999996433
|
|
| >PHA02142 putative RNA ligase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.51 Score=55.31 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=89.6
Q ss_pred ChhHHH-HhccCceEEEEEecceeEEEEEEe--------------------eCCeEEEEcCCCc---cCCCCchhHH---
Q 001045 968 GVPQVL-KLFQNKAFTCEYKYDGQRAQIHKL--------------------VDGTVRIFSRNGD---ETTSRFPDLI--- 1020 (1176)
Q Consensus 968 ~~~~~~-~~~~~~~f~~E~KyDGeR~QiH~~--------------------~~g~V~ifSR~g~---d~T~~ypdl~--- 1020 (1176)
++.+.+ .+..+..|++-.|+||-=|-+.+. ..+.+..-|||.. .-+..|.+++
T Consensus 157 n~~~~~~~~~~~~~f~~TeKLDGsS~tvy~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~srn~~l~~~~~~~~W~~a~~~ 236 (366)
T PHA02142 157 NIFNRYKEKYADVKFAKSLKLDGSSITMAWVTDPDLFLDLGTEDEPYAHDYDDAQFIVASRNQVLRYNADSKWWKGVENY 236 (366)
T ss_pred hhhhhhhhhhcCceEEEEEEecceeEEEEEecCCcccccccccccccccccCCCceeEeeccccccccCCchHHHHHHHc
Confidence 444443 235578899999999999888742 2567788999986 3233444432
Q ss_pred ---HHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCC
Q 001045 1021 ---SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYT 1097 (1176)
Q Consensus 1021 ---~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~P 1097 (1176)
+.+.+ ...++.+=||+++-.-+.+ +. . -....|++|||-.++++. =++
T Consensus 237 ~i~~~l~~----~~~~iaIqGEl~Gp~IQ~N--------------------~~--~-~~~~~F~vF~v~~i~~~~--yl~ 287 (366)
T PHA02142 237 QIVDRLKE----LGMSVAIQGELMGPGIQKN--------------------RE--N-FDKYRIFAFRAWFIDEQR--FAT 287 (366)
T ss_pred CcHHHHHh----hCCcEEEEEEEecccccCc--------------------cc--c-CCCCceEEEEEEEeccce--eCC
Confidence 23333 3568999999998422110 00 0 002479999987777665 468
Q ss_pred HHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh-----CCCceEEEecC
Q 001045 1098 LRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH-----SSCEGIIVKSL 1161 (1176)
Q Consensus 1098 l~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~-----~g~EGlmvK~l 1161 (1176)
.++++++++++= +..++.+... ....... .++++++.|-- .-+||+|+|..
T Consensus 288 ~~e~~~~~~~~g-------l~~VPvL~~~---~~~~~~~---s~eE~L~~A~~p~~~~~~~EGiViKp~ 343 (366)
T PHA02142 288 DEEFQDLCRTLG-------MEIVPQLGYS---YPFQEFT---NVKEMLAAADIPSINHKIAEGVVYKSV 343 (366)
T ss_pred HHHHHHHHHHcC-------Cceeeeeccc---ccccccC---CHHHHHhhcCCCcccccccceEEEeec
Confidence 889999888764 1233332210 0000011 34555555421 33899999985
|
|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.2 Score=62.27 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhccc-cCcchhhHHHHHHHhhccCcccccccccc
Q 001045 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR-IGAMMRTILPALAQAVVMNSSLEFSHEGK 906 (1176)
Q Consensus 828 ~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LR-iG~~~~tvl~aLa~A~~~~~~~~~~~~~~ 906 (1176)
.++-+.+++|++++ +...|.++|.++|+.+++.+.-|.++++++.+. .|++++.+.++++.+++.+.
T Consensus 2 ~~fa~~~~~i~~t~---~~~ek~~~l~~~~~~~~~~d~~~~~~ll~g~~~~~~i~~~~l~k~~~~~~g~~~--------- 69 (539)
T PRK09247 2 KAFAELLDRLDLTT---STNAKLALLADYFRSAPDPDRAWALALLTGGLPRRLVKTRLLRELAAERADLPP--------- 69 (539)
T ss_pred hHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCcccCCCCHHHHHHHHHHHHCcCH---------
Confidence 35566777787655 467899999999999999999999999998875 89999999999999988764
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 907 MENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 907 ~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
..+.+.|....|++.++..+..
T Consensus 70 ------------~~~~~~~~~~GDlg~~~~~~~~ 91 (539)
T PRK09247 70 ------------WLFEESYDYVGDLAETIALLLP 91 (539)
T ss_pred ------------HHHHHHHHhcCCHHHHHHHhcc
Confidence 4556788888999998877754
|
|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.22 Score=52.62 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhcc-------ccCcchhhHHHHHHHhhccCccc
Q 001045 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL-------RIGAMMRTILPALAQAVVMNSSL 899 (1176)
Q Consensus 827 i~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~L-------RiG~~~~tvl~aLa~A~~~~~~~ 899 (1176)
..++-+.+++|++. .+...|.++|.+++..+.+.+..|.+..+++-+ ..|++++++.++++++++++.
T Consensus 3 F~~l~~l~~~l~~~---~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~l~P~~d~r~~~i~~~~L~k~~~~~~~~~~-- 77 (177)
T PF04675_consen 3 FSDLCELFEKLEST---SSRLEKIAILSNFFRSWREEDLGPDLYLLLRLLFPEYDGREYGIGEKLLAKAIAEALGLPE-- 77 (177)
T ss_dssp HHHHHHHHHHHHT------HHHHHHHHHHHHHTSHCCGHHCHHHHHHTHSSTTTCS---S--HHHHHHHHHHHHTS-H--
T ss_pred HHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcccchhhhHHHHHhcccccchhhhHhccchhHHHHHHHHHHcCCH--
Confidence 45667788888764 356789999999999999887777777777643 689999999999999998765
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhcc
Q 001045 900 EFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNK 941 (1176)
Q Consensus 900 ~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~ 941 (1176)
..+.+.|....|++.++..++..
T Consensus 78 -------------------~~~~~~~~~~GD~g~~~~~~~~~ 100 (177)
T PF04675_consen 78 -------------------KSIDESYKKVGDLGEVAEEVLQK 100 (177)
T ss_dssp -------------------HHHHHHHHHHS-HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHhcCcHHHHHHHHHhh
Confidence 45566888899999999888754
|
It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A. |
| >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.2 Score=59.22 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCeeEe-CCcc-EEEecC---------------CcCCCCccEEEeccCChhhhCCcccCCC-------CceEEeCHHH
Q 001045 37 TFPPSKHV-PNTR-FLIDAF---------------RYAADFSVSYFLSHFHSDHYTGLSPSWS-------KGIIFCSEIT 92 (1176)
Q Consensus 37 ~~p~~~~i-pg~~-~liD~~---------------~~~~~~i~avfITHaH~DHiggL~~l~~-------~~pIY~s~~T 92 (1176)
..+++-++ .++. |+||.. ..+..+|.+|+.||.|.||+||+-.+.. .++|.++..-
T Consensus 124 DisNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GF 203 (655)
T COG2015 124 DISNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGF 203 (655)
T ss_pred cccceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhH
Confidence 44555554 3443 678885 1234689999999999999999976432 5789988775
Q ss_pred HHH
Q 001045 93 SRL 95 (1176)
Q Consensus 93 ~~l 95 (1176)
.+-
T Consensus 204 me~ 206 (655)
T COG2015 204 MEE 206 (655)
T ss_pred HHH
Confidence 443
|
|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.39 Score=59.30 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=80.8
Q ss_pred CcchHHHHHHHHHHHhhh---chHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHh
Q 001045 712 PAPYIHLARTFDLVEAER---GKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEAC 788 (1176)
Q Consensus 712 ~~~F~~l~~~~~~i~~t~---~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~ 788 (1176)
+.+-.++-..|++|...+ ++.+|.++|..++.+. +|.+.-+.+.++++.+. +|+++.++..|+++++
T Consensus 72 ~ltl~~V~~~l~~ia~~~g~~s~~~k~~~l~~ll~~~---~~~E~~~l~r~i~~~lR-------iGv~~~~v~~Ala~a~ 141 (508)
T PRK03180 72 TLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAA---TEDEQRFLRRLLTGELR-------QGALDGVMADAVARAA 141 (508)
T ss_pred CCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhCCCc-------ccccHHHHHHHHHHHh
Confidence 566777777888888765 5588999999999986 89999999999988874 7999999999999999
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHH
Q 001045 789 GTNRSKIRDMYNRLGDLGDVAQECR 813 (1176)
Q Consensus 789 g~~~~~i~~~~~~~GDlG~va~~~~ 813 (1176)
+++...+++.|.-.||++.++....
T Consensus 142 ~~~~~~v~~a~~~~~dl~~v~~~~l 166 (508)
T PRK03180 142 GVPAAAVRRAAMLAGDLPAVAAAAL 166 (508)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999998665
|
|
| >KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.7 Score=50.82 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCccEEEeccCChhhhCCcccC-C--CCceE-EeCHHHHHHHHHhhccCCCceEEeCCCceEEE----CCEEEEEEecCC
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPS-W--SKGII-FCSEITSRLLSQILNINPKFIYPLPIKIPVLI----DGCEVVLVGANH 130 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l-~--~~~pI-Y~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i----~~~~Vt~~~a~H 130 (1176)
+.++-+++||.|.||.-.-... + .+.++ |.+..-+..+. +-....+..+..+....+ +-++|-+.|+.|
T Consensus 131 p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~---~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqH 207 (343)
T KOG3798|consen 131 PDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWME---GDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQH 207 (343)
T ss_pred CCCceeccccccccccchHHHHhhhccCccceeehhhhhheec---CCCCCceeEeeccchhceecCCcEEEEEEcchhh
Confidence 5789999999999997543211 1 12233 23332222222 111222344444444333 237888899999
Q ss_pred -CcCc---------eEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHH
Q 001045 131 -CPGA---------VQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEY 200 (1176)
Q Consensus 131 -~pGS---------~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~ 200 (1176)
+--+ +++.+..+. .+++|.||+++++..... .-..|..+|+-.+=+.-..|.....+++-.-++
T Consensus 208 w~~R~L~D~Nk~LW~sw~v~g~~-----nrfffaGDTGyc~~~F~~-IgerfGpfdLAaiPiGaYePrWfmK~~HInPeE 281 (343)
T KOG3798|consen 208 WGQRGLFDRNKRLWSSWAVIGEN-----NRFFFAGDTGYCDGEFKK-IGERFGPFDLAAIPIGAYEPRWFMKSQHINPEE 281 (343)
T ss_pred hcccccccCCcceeeeeEEecCC-----ceEEecCCCCcccHHHHH-HHHhcCCcceeeccccccCchhhcccccCCHHH
Confidence 4332 345554432 589999999999853221 112345688866665533444333334333334
Q ss_pred HHHHHHHHhhhccccCCCeEEEEEeccccchH
Q 001045 201 VVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232 (1176)
Q Consensus 201 l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~ 232 (1176)
++++-+..-.+ ...-|..++|.+|.+
T Consensus 282 av~Ihkdv~ar------ns~gIHWGTf~l~~E 307 (343)
T KOG3798|consen 282 AVEIHKDVRAK------NSIGIHWGTFHLGSE 307 (343)
T ss_pred HHHHHHHHhhh------cceeEeeeeeecccc
Confidence 44444443222 123367888887764
|
|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.4 Score=56.74 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhc---chhhHHHHHHHHhhccc-------cCcchhhHHHHHHHh
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSC---REKEMKFLVRTLVRNLR-------IGAMMRTILPALAQA 892 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~---~~~E~k~LvRiIlk~LR-------iG~~~~tvl~aLa~A 892 (1176)
.++...++-+.|++|...++ ...|.++|.++|+.+ ++.+.-|.++++.+.+. +|++++.+.+|++.+
T Consensus 127 ~~~~f~~l~~~~~~Ie~tt~---rlek~~~L~~~~r~~~~~~p~dl~~~vyL~~~~l~P~~e~~elgige~~L~kai~e~ 203 (744)
T PLN03113 127 ERVPFLFVALAFDLISNETG---RIVITDIVCNMLRTVMATTPEDLVAVVYLLANRIAPAHEGVELGIGEATIIKALAEA 203 (744)
T ss_pred CCccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCCccccCcccCcCHHHHHHHHHHH
Confidence 34667888888888887665 467899999999985 89999999999887764 599999999999999
Q ss_pred hccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHh
Q 001045 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLM 939 (1176)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~ 939 (1176)
++.+. ..++..|....|++.|+..+.
T Consensus 204 ~g~~~---------------------~~ik~~y~~~GDlG~vA~~~~ 229 (744)
T PLN03113 204 FGRTE---------------------KQVKKQYKELGDLGLVAKASR 229 (744)
T ss_pred HCcCH---------------------HHHHHHHHHhCCHHHHHHhhh
Confidence 98764 346667777888888877554
|
|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
Probab=87.96 E-value=2.1 Score=53.23 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=79.5
Q ss_pred CcchHHHHHHHHHHHhhh---chHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHh
Q 001045 712 PAPYIHLARTFDLVEAER---GKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEAC 788 (1176)
Q Consensus 712 ~~~F~~l~~~~~~i~~t~---~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~ 788 (1176)
+..-.++-.+|+.|.+.+ ++.+|.++|.++++.. +|.+.-+.+.++++.+. .|+++.++..++..++
T Consensus 54 ~lti~eV~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~---~~~e~k~l~r~i~~~lr-------iG~~~~~il~al~~~~ 123 (514)
T TIGR00574 54 PLTVKEVYETLKNIAETSGEGSQDKKIKLLKSLLKRA---SPLEAKYLIRTILGDLR-------IGIAEKTILDALAKAF 123 (514)
T ss_pred CcCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHhhhcc-------cCccHHHHHHHHHHHh
Confidence 456677777888887765 5678999999999985 88999999998887763 6999999999999999
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHH
Q 001045 789 GTNRSKIRDMYNRLGDLGDVAQECR 813 (1176)
Q Consensus 789 g~~~~~i~~~~~~~GDlG~va~~~~ 813 (1176)
+++...+.+.|+...|++.|+..+.
T Consensus 124 ~~~~~~~~~~~~~~~dl~~v~~~l~ 148 (514)
T TIGR00574 124 LLSHPDVERAFNLTNDLGKVAKILL 148 (514)
T ss_pred ccchHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999986
|
All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.9 Score=45.70 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=98.8
Q ss_pred CceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHH
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQEL 1057 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L 1057 (1176)
+.+|++-.-==|-||.|.- ..|...-|.|+|..+ .+||...+--..--.+...=-||||= |++
T Consensus 115 sqdW~vv~~PvGKR~lvVa-SrG~Tvay~k~G~~v-~rF~S~LPGGnrr~~~a~~ytILDCI---y~e------------ 177 (325)
T KOG3132|consen 115 SQDWYVVARPVGKRCLVVA-SRGTTVAYVKNGSTV-HRFPSALPGGNRRKGPANSYTILDCI---YHE------------ 177 (325)
T ss_pred CcceEEEEeecCceEEEEe-cCCceEEEecCCeeE-eeccccCCCCCcCCCCcccceeeeee---ecc------------
Confidence 4689998888999999987 588888899999876 34554311000000111222566652 221
Q ss_pred hhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCC--------CcEEE--eEEEEEcC
Q 001045 1058 SSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM--------GYFQY--AKEMTVEG 1127 (1176)
Q Consensus 1058 ~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~--------~~i~~--~~~~~v~~ 1127 (1176)
..-.|+|.|+|.++|.++.+.|..-|.=.|++-+. +.+ .++.+ ++...+
T Consensus 178 ------------------snQTYYVlD~~cWrgh~~yec~~dFRffwl~SKL~-E~~~l~~~t~~~~f~Fs~vp~~pC-- 236 (325)
T KOG3132|consen 178 ------------------SNQTYYVLDMVCWRGHSLYECTSDFRFFWLQSKLA-ETGALDPPTVYHKFRFSVVPFYPC-- 236 (325)
T ss_pred ------------------cCceEEEEEEEeecCcccccCchHHHHHHHhhhcc-ccccCCCCCcCccceecccCCCCC--
Confidence 12468999999999999999999999999998873 322 12333 333222
Q ss_pred CCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1128 ~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
+.+.+-+.+...+--...||.+=... -.|.||.
T Consensus 237 ---------~q~~l~~~~~~~~pf~~DGLLFYhks--~~yqpgq 269 (325)
T KOG3132|consen 237 ---------DQSGLHSAYTGSLPFVRDGLLFYHKS--VVYQPGQ 269 (325)
T ss_pred ---------CHHHHHHHHcCCCceeeeeEEEeecc--eeeCCCC
Confidence 46778888887777788999987765 6899995
|
|
| >KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.20 E-value=0.77 Score=54.21 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=67.8
Q ss_pred ccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHh-hcCCCCCCeEEEEEEEEEecCCCCcccCh
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINE-FCKPAAGTFILDAEVVAIDRKNGCKIMSF 1054 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~-~~~~~~~~~ILDGElVa~d~~~g~~~~pF 1054 (1176)
+.-..|.+++|.||.|...-++.++.+..|-|.....- -+-...++. .........++|||++. |.-++.
T Consensus 282 ~~~~~y~~~We~dg~~~~~L~~~~~~~~~~dR~~~~~~---~~~~~~~~~~~~~~~~~~tl~dge~~l-D~l~~~----- 352 (393)
T KOG2386|consen 282 LVFEYYEASWEADGTRYMMLIDGDGEYYDFDRWRFVKG---RENLRKIREDSDTKVLHQTLLDGEMIL-DRLKEE----- 352 (393)
T ss_pred hhhhhhhhhhcccCcEEEEEecCCceeEechhhhHHHh---hhhhhcccccccchhhhhhhcccceec-cccccc-----
Confidence 33345678999999999888866666777776543321 100000000 00112345799999998 654320
Q ss_pred HHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhh
Q 001045 1055 QELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLF 1109 (1176)
Q Consensus 1055 q~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~ 1109 (1176)
....+.++|++-.|++.+...|+. |.+.+++-+
T Consensus 353 ---------------------~~~r~l~Yd~~r~n~~~v~~~~f~-r~~~~~~ev 385 (393)
T KOG2386|consen 353 ---------------------AIPRYLIYDMVRFNSQKVEKRPFS-RWQIIEKEV 385 (393)
T ss_pred ---------------------cchhheeeeeeeccCcccccCcch-HHHHHHHHh
Confidence 124578999999999999999999 998877655
|
|
| >cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
|---|
Probab=82.72 E-value=1.4 Score=34.42 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=29.9
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccc
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYY 629 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1176)
++.|+|++.+ | -++..+...|++++||+++|++..+
T Consensus 2 ~~~v~~L~~m--G--f~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM--G--FSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4567778777 3 4599999999999999999998765
|
The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. |
| >KOG4736 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.10 E-value=4.5 Score=45.86 Aligned_cols=106 Identities=14% Similarity=-0.008 Sum_probs=62.6
Q ss_pred CCccEEEecCCc-------CCCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCC-CceEEeCCCceE
Q 001045 45 PNTRFLIDAFRY-------AADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINP-KFIYPLPIKIPV 116 (1176)
Q Consensus 45 pg~~~liD~~~~-------~~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~-~~i~~l~~~~~~ 116 (1176)
.+..+++|.+-. ..+.|+.+.+||.|.+|++.+...... |+ +...+..... ..-..++.+...
T Consensus 103 ~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s-p~--------l~~s~e~~gr~~~pt~l~e~~~~ 173 (302)
T KOG4736|consen 103 GGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS-PI--------LYHSMEYIGRHVTPTELDERPYL 173 (302)
T ss_pred CCceEEEecCCchhhhcCcChhhcceeEEeccCcccccccccccCC-HH--------HhhhhhhcCCccChhhhccCCcc
Confidence 344567777622 127899999999999999987543221 11 1122211111 112234444555
Q ss_pred EECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 117 LIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 117 ~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
++++.-+-.--.||.+-+...+++..+.- ++++||||+-....
T Consensus 174 ~l~~~~~V~~TpGht~~~isvlv~n~~~~---GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 174 KLSPNVEVWKTPGHTQHDISVLVHNVDLY---GTVAITGDLFPREE 216 (302)
T ss_pred ccCCceeEeeCCCCCCcceEEEEEeeccc---ceEEEEeecccCCc
Confidence 66543333345688888888888875533 59999999855443
|
|
| >TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family | Back alignment and domain information |
|---|
Probab=81.86 E-value=19 Score=42.28 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred CceEEEEEecceeEEEEEEee-CCeEE-----EEcCCCc---cCCCCchhH------HHHHHhhcCCCCCCeEEEEEEEE
Q 001045 978 NKAFTCEYKYDGQRAQIHKLV-DGTVR-----IFSRNGD---ETTSRFPDL------ISIINEFCKPAAGTFILDAEVVA 1042 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~-~g~V~-----ifSR~g~---d~T~~ypdl------~~~l~~~~~~~~~~~ILDGElVa 1042 (1176)
+..|++-.|+||-=|-+.+.. .+.+. +-|||.+ +-+..|... .+.+.+. ....++.+=||+++
T Consensus 158 ~~~~~~TeKldGss~tv~~~~~~~~~~~~~~Gvcsr~~~l~~~~~~~~W~~a~~~~i~~~l~~~--~~~~~vaiqGEl~G 235 (341)
T TIGR02306 158 GEKVAKTEKLHGTSITVAWVTDEERFLVLSKGVASRNLVLRENADNKYWKAVENYQIVDRAKAA--ELRMSVAIFGEVMG 235 (341)
T ss_pred CceEEEEEEecceeEEEEEecCCcccccccceeecCCcccccCCCchhHHHHHhcChHHHHhhc--ccCceEEEEEEEeC
Confidence 578999999999998777632 22222 3478876 333445443 3333321 24567889999997
Q ss_pred EecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHh
Q 001045 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1043 ~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
..- |.. .- ....+-.+++|++ +..|+. .=++.+++.++++++
T Consensus 236 ~gI------------Q~n-~Y---------g~~~~~~~f~F~v-~~~~~~-ryld~~~~~~~~~~~ 277 (341)
T TIGR02306 236 PGI------------QKN-RY---------GFDKYRTVFAFRA-FFDGEQ-RFLTDEDFQDLCLTL 277 (341)
T ss_pred ccc------------cCC-cC---------CCCCCceEEEEEE-EEcCcc-eecCHHHHHHHHHhc
Confidence 321 111 00 0011122788887 555443 235889999888874
|
The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1176 | ||||
| 1x9n_A | 688 | Crystal Structure Of Human Dna Ligase I Bound To 5' | 3e-87 | ||
| 4b87_A | 367 | Crystal Structure Of Human Dna Cross-Link Repair 1a | 1e-51 | ||
| 2hiv_A | 621 | Atp-Dependent Dna Ligase From S. Solfataricus Lengt | 3e-39 | ||
| 3zdk_A | 336 | Crystal Structure Of Human 5' Exonuclease Apollo Le | 5e-35 | ||
| 3rr5_A | 570 | Dna Ligase From The Archaeon Thermococcus Sp. 1519 | 6e-29 | ||
| 4eq5_A | 571 | Dna Ligase From The Archaeon Thermococcus Sibiricus | 2e-26 | ||
| 3gde_A | 558 | The Closed Conformation Of Atp-Dependent Dna Ligase | 2e-26 | ||
| 2cfm_A | 561 | Atp-Dependent Dna Ligase From Pyrococcus Furiosus L | 1e-25 | ||
| 3l2p_A | 579 | Human Dna Ligase Iii Recognizes Dna Ends By Dynamic | 2e-13 | ||
| 1vs0_A | 310 | Crystal Structure Of The Ligase Domain From M. Tube | 6e-06 | ||
| 3vnn_A | 139 | Crystal Structure Of A Sub-Domain Of The Nucleotidy | 5e-05 |
| >pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 | Back alignment and structure |
|
| >pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a Length = 367 | Back alignment and structure |
|
| >pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 | Back alignment and structure |
|
| >pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo Length = 336 | Back alignment and structure |
|
| >pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 | Back alignment and structure |
|
| >pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 | Back alignment and structure |
|
| >pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 | Back alignment and structure |
|
| >pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 | Back alignment and structure |
|
| >pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 | Back alignment and structure |
|
| >pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 | Back alignment and structure |
|
| >pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 | Back alignment and structure |
|---|
Score = 446 bits (1148), Expect = e-142
Identities = 185/507 (36%), Positives = 287/507 (56%), Gaps = 24/507 (4%)
Query: 678 SVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSM 737
+ ++ +DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ +
Sbjct: 21 GKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVET 80
Query: 738 LCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRD 797
L N+ RS++ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R
Sbjct: 81 LSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRA 140
Query: 798 MYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLM 857
GD+G VA+ R TQ L+ PPPPL V+S I+ TGS STA+K +I L
Sbjct: 141 EAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLF 200
Query: 858 CSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMN--------SSLEFSHEGKMEN 909
+CR E +F+ R+L LR+G +++L AL+QAV + + ++ E
Sbjct: 201 VACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEA 260
Query: 910 LKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGV 969
K L+ + + +P LD +IP L+ G+ + PG+P+KPMLA T G+
Sbjct: 261 RKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGI 320
Query: 970 PQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKP 1029
+VLK F+ AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P
Sbjct: 321 SEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLP 380
Query: 1030 AAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN 1089
+ +FILD E VA DR+ +I FQ L++R+R + ++V +C++ FD+++ N
Sbjct: 381 SVTSFILDTEAVAWDREKK-QIQPFQVLTTRKR----KEVDASEIQVQVCLYAFDLIYLN 435
Query: 1090 GEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEAL 1149
GE L+ L +RR+ L++ F E G F +A + + + FLE+++
Sbjct: 436 GESLVREPLSRRRQLLRENF-VETEGEFVFATSLDTKDIEQIAE----------FLEQSV 484
Query: 1150 HSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
SCEG++VK+LDVDA Y +KRS +W
Sbjct: 485 KDSCEGLMVKTLDVDATYEIAKRSHNW 511
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-130
Identities = 128/489 (26%), Positives = 214/489 (43%), Gaps = 51/489 (10%)
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPA 756
+ G + +A FD +E +++ ++L ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKV 61
Query: 757 VYLCTNKIASNHENI-ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQT 815
VY+ K+ + EL IG + AI A T+ + + ++Y +GDLG+VA+ +
Sbjct: 62 VYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSK 121
Query: 816 Q--------ALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867
Q L + +VYS L K+++ TG GS K L+ L+ E KF
Sbjct: 122 QQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKF 181
Query: 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNI 927
LVR + LR+G T+L A+A A S AYN+
Sbjct: 182 LVRFVEGRLRVGIGDATVLDAMAIAFGGGQSAS------------------EIIERAYNL 223
Query: 928 LPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKY 987
L + ++ KGI + TL G+PI+PMLA+ + ++LK +YKY
Sbjct: 224 RADLGNIAKIIVEKGIE-ALKTLKPQVGIPIRPMLAERLSNPEEILKKMGGN-AIVDYKY 281
Query: 988 DGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKN 1047
DG+RAQIHK + + IFSR + TS++PD++ ++++ FI++ E+VAID ++
Sbjct: 282 DGERAQIHKK-EDKIFIFSRRLENITSQYPDVVDYVSKY--IEGKEFIIEGEIVAIDPES 338
Query: 1048 GCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKD 1107
G ++ FQEL R + S I + + VF+FD+M+ L RRK L+
Sbjct: 339 G-EMRPFQELMHR---KRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLES 394
Query: 1108 LFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGY 1167
+ Y + A + ++ + +F A+ EG++VK++ DA Y
Sbjct: 395 IVKPN--DYVKIAHHIQAN----------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIY 442
Query: 1168 SPSKRSDSW 1176
R W
Sbjct: 443 QAGARGWLW 451
|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 | Back alignment and structure |
|---|
Score = 375 bits (966), Expect = e-118
Identities = 108/469 (23%), Positives = 194/469 (41%), Gaps = 53/469 (11%)
Query: 710 GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHE 769
G + A + +E ++ + + + D+ V T K+ +
Sbjct: 1 GSHMLFAEFAEFCERLEKISSTLELTARIAAFLQK--IEDERDLYDVVLFITGKVYPPWD 58
Query: 770 NIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC-RQTQALLAPPPPLLIK 828
EL +G L+ A+E G RS+I M GDLG VA++ ++ + L ++
Sbjct: 59 ERELGVGIGLLYEALENVSGVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLAFEELTVR 118
Query: 829 DVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPA 888
V +I+ TG GS RK L+ L E ++L R ++ +R+G + A
Sbjct: 119 KVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRLGVGEGIMRDA 178
Query: 889 LAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE-AYNILPSLDLLIPSLMNKGIGFSA 947
+A+A + VE AY I L + +G
Sbjct: 179 IARAFRAD----------------------PETVERAYMITNDLGRVAVVAKKEGE-EGL 215
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
+ + +P++ MLA++ + ++ + E+K+DG R Q+H V I+SR
Sbjct: 216 RKMKIEIHIPVRMMLAQVAESLESAVREMRT--AAVEWKFDGSRVQVHW-DGSRVTIYSR 272
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ T+ PD++ I + KP ILD EV+A+ K M FQ + R R +
Sbjct: 273 RLENVTNALPDIVEEIKKSVKP---GVILDGEVIAVKEG---KPMPFQHVLRRFR--RKH 324
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
+ K+ + FDI++ +GE + LR+RRK L+ + + AK++ +
Sbjct: 325 DVAKMVEKIPLEAHFFDILYHDGE-CIDLPLRERRKLLESAV--NESEKIKLAKQIVTD- 380
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
S+ ++ +EA+ + EG+++K + Y P KR +W
Sbjct: 381 ---------SVDEVRKMYDEAISAGHEGVMIKLP--SSPYIPGKRGKNW 418
|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 | Back alignment and structure |
|---|
Score = 372 bits (956), Expect = e-116
Identities = 104/463 (22%), Positives = 191/463 (41%), Gaps = 48/463 (10%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
Y+ LA+ + +E K+ ++ + + + D + YL ++ + EL
Sbjct: 3 YLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELG 59
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGD-VAQECRQTQALLAPPPPLLIKDVYSM 833
+G L+ A+ A G + +I + GDLG+ +A ++ + PL IK VY
Sbjct: 60 VGEKLLIKAVAMATGIDAKEIEESVKDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQT 119
Query: 834 LCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAV 893
L K++ TG GS +K + +L E K+L RT++ +R G + A+A A
Sbjct: 120 LVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLARTILGTMRTGVAEGLLRDAIAMAF 179
Query: 894 VMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMV 953
+ AY + + +G + + +
Sbjct: 180 HVK---------------------VELVERAYMLTSDFGYVAKIAKLEGNE-GLAKVQVQ 217
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
G PIKPMLA+ + L + E KYDG R Q+HK + ++SR + T
Sbjct: 218 LGKPIKPMLAQQAASIRDALLEMGGE-AEFEIKYDGARVQVHK-DGSKIIVYSRRLENVT 275
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P+++ + E P I++ E+VAI + + FQ + R R + I
Sbjct: 276 RAIPEIVEALKEAIIP--EKAIVEGELVAIGENG--RPLPFQYVLRRFR--RKHNIEEMM 329
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
K+ + + +FD+++ +G+ L+ RR+ L+++ ++ + A+ + +
Sbjct: 330 EKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEII--KQNEKIKVAENLITK------- 380
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ + F + AL EG++ K L DA Y P R W
Sbjct: 381 ---KVEEAEAFYKRALEMGHEGLMAKRL--DAVYEPGNRGKKW 418
|
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-102
Identities = 82/468 (17%), Positives = 163/468 (34%), Gaps = 55/468 (11%)
Query: 709 SGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNH 768
+ + +V ++ + R + D VYL +
Sbjct: 3 RHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRK--GSAGDGFHGDVYLTVKLLLPGV 60
Query: 769 ENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC--RQTQALLAPPPPLL 826
N+ + N + + GD+ + + + A L
Sbjct: 61 IKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQ-GDVSETIRVFFEQSKSFPPAAKSLLT 119
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
I++V L ++S T ++ + ++ C ++K ++R + +L++ + + +L
Sbjct: 120 IQEVDEFLLRLSKLTKEDE---QQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVL 176
Query: 887 PALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFS 946
AL A+ +++ + + +
Sbjct: 177 DALDPNAYE---------------------AFKASRNLQDVVERVLHNAQEVEKEPGQRR 215
Query: 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFS 1006
A ++ P++PMLA+ V +K N F+ E KYDG+R Q+HK FS
Sbjct: 216 ALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKN-GDHFSYFS 273
Query: 1007 RNGDE-TTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGK 1065
R+ + I + P + ILD+EV+ ID K G K + F L ++
Sbjct: 274 RSLKPVLPHKVAHFKDYIPQ-AFPGGHSMILDSEVLLIDNKTG-KPLPFGTLGVHKKA-- 329
Query: 1066 DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTV 1125
++C+FVFD ++ N L+ L +RRK+L D + +++ V
Sbjct: 330 ------AFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIP-NRIMFSEMKRV 382
Query: 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRS 1173
+ + + + EG+++K + Y P KR
Sbjct: 383 T----------KALDLADMITRVIQEGLEGLVLKDV--KGTYEPGKRH 418
|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 8e-43
Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 43/226 (19%)
Query: 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD 1010
++ + PMLA + + E +DG R + G VR+ SR+G
Sbjct: 2 AVFEFDNLAPMLATHGTVAG-----LKASQWAFEGXWDGYRLLVEA-DHGAVRLRSRSGR 55
Query: 1011 ETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVIT 1070
+ T+ +P L ++ + A +LD E V +D +G + SF ++ +R R
Sbjct: 56 DVTAEYPQLRALAEDL---ADHHVVLDGEAVVLD-SSG--VPSFSQMQNRGR-------- 101
Query: 1071 IKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDN 1130
+ + FD+++ +G LLG + RRK L+ L + + +G
Sbjct: 102 ----DTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATS---LTVPELLPGDGAQ- 153
Query: 1131 CLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ EG+I K D+ Y P +R SW
Sbjct: 154 -------------AFACSRKHGWEGVIAKRR--DSRYQPGRRCASW 184
|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-42
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP------DLISIINEFCKPAAGTF 1034
F E K DG+R Q+HK + FSRNG T +F L I+ K
Sbjct: 1 FYIETKLDGERMQMHK-DGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQIC 59
Query: 1035 ILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLL 1094
ILD E++A + M +R +D + C VFD++ N ++L
Sbjct: 60 ILDGEMMAYNPNTQ-TFMQKGTKFDIKRMVED-------SDLQTCYCVFDVLMVNNKKLG 111
Query: 1095 GYTLRQRRKYLKDLFYDEKMGYFQYAKE 1122
TLR+R + L +F G + ++
Sbjct: 112 HETLRKRYEILSSIF-TPIPGRIEIVQK 138
|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-30
Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 44/248 (17%)
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
P + + + I + E KYDG R I SR
Sbjct: 7 PFKAVSFVESAIKKALDN------AGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIP 60
Query: 1014 SRFPDLISIINEFCK-------PAAGTFILDAEVVAID------------RKNGCKIMSF 1054
+ L + + F+LD E++ + K F
Sbjct: 61 A-LEHLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEF 119
Query: 1055 QELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN------GEQLLGYTLRQRRKYLKDL 1108
E E K + K + + ++ I+ + ++ +++ K + L
Sbjct: 120 HEELFVEPIRKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPL 179
Query: 1109 FYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYS 1168
E ++ + E D + ++ E+ EG+IVK D Y
Sbjct: 180 L-QEYFPEIEWQAAESYEVYD--------MVELQQLYEQKRAEGHEGLIVK--DPMCIYK 228
Query: 1169 PSKRSDSW 1176
K+S W
Sbjct: 229 RGKKSG-W 235
|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 5e-17
Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 44/223 (19%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
KP+LA + V K G R+ ++ SR +
Sbjct: 2 ITKPLLAATLENIEDV-----QFPCLATPKIAGIRSVKQ------TQMLSRTFKPIRNSV 50
Query: 1017 PDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKV 1076
+ ++ E D E+ +FQ+ +S G K
Sbjct: 51 MN--RLLTELLP-----EGSDGEISIEG-------ATFQDTTSAVMTGH------KMYNA 90
Query: 1077 DICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDV 1136
+ FD + + + + + Y+ + + + + VE ++
Sbjct: 91 KFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNI------ 144
Query: 1137 SLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK---RSDSW 1176
+++ + + L EG++++ D Y + +
Sbjct: 145 --TELLQYERDVLSKGFEGVMIR--KPDGKYKFGRSTLKEGIL 183
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 3e-15
Identities = 93/665 (13%), Positives = 186/665 (27%), Gaps = 195/665 (29%)
Query: 232 EKILIEIFKK--CGRKVCVDSRKMEVLRVLG----YGDSGV--FTEDESETDVHVVGWNE 283
+ + I K + LR+ + V F E+ + +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KF-- 93
Query: 284 IMVERGYDKVVGFVPTGWT--YEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFL 341
++ + P+ T Y +R++ F + V + Y +LR+ + L
Sbjct: 94 -LMSPIKTEQRQ--PSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQP--YLKLRQALLEL 147
Query: 342 KPKRVIPTVGMDIEKLDSKHANKMRKYFAG-----LVDEMASKKEFL--MGFH-----RG 389
+P + + G+ G + ++ + M F
Sbjct: 148 RPAKNVLIDGV-----------------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 390 TSEIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTAL 449
E V E +K D + + D SS ++ + ++
Sbjct: 191 NCNSPETVLE----------------MLQKLLYQIDPNWTSRSDHSSNIKL----RIHSI 230
Query: 450 DDEETEKMVQEI-RNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQEYKLPT 508
E + + NCL +L + ++ +A F
Sbjct: 231 QAELRRLLKSKPYENCL-------LVLLNVQNA--KAWNA---F---------------- 262
Query: 509 IKHSIKS-TLSPSKRKKTVTN--NPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGD 565
++ L + R K VT+ + + S + S K L + D
Sbjct: 263 ---NLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQD 317
Query: 566 VVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMAL 625
+ E NP + E I L + + +K + +L
Sbjct: 318 L---PREVL--TTNPR---RLSIIAESIRDGLATWD------NWKHVNCDKLTTIIESSL 363
Query: 626 DL--------YYDN----QEGDR--GKTVNRL--EFSKSSVQS--DSCNKDCSSALEKIV 667
++ +D ++ + + KS V + +K S +EK
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQP 421
Query: 668 SEELQHI----TDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAP---YI---- 716
E I ++ V+ ++ + ++V + Y+ + P Y
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 717 --HLART---------------FDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYL 759
HL F +E KI+ S N S+L + L +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSIL-----NTLQQLKF 529
Query: 760 CTNKIASNHENIELNIGGSLVTSAIEE---ACGTN--RSKIRDMYNR--LGDLGDVAQEC 812
I N E + +AI + N SK D+ + + + +E
Sbjct: 530 YKPYICDNDPKYERLV------NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 813 -RQTQ 816
+Q Q
Sbjct: 584 HKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 6e-14
Identities = 97/609 (15%), Positives = 176/609 (28%), Gaps = 167/609 (27%)
Query: 7 DKNLTLDSTHLFLSTQSSPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADFSVSYFL 66
D D LS + D +I V T L + V F+
Sbjct: 34 DCKDVQDMPKSILSKEEI--DHIIMSKDA--------VSGTLRLFWTLLSKQEEMVQKFV 83
Query: 67 SHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQ---ILNINPKFIYPLPIKIPVLIDGCEV 123
+Y L S +T + Q + N N F +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQ 142
Query: 124 VLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVF-LDT 182
L+ + + G G + D C + +Q M+ +F L+
Sbjct: 143 ALLELRPAKNVL-----IDGV-LGSGKTWVALD--VCLSYKVQCKMD-----FKIFWLNL 189
Query: 183 TYCN-PKFLF-PLQEESVEYVVNVVNRVGGELNEGL-------QKRVLFLVATYVIGKEK 233
CN P+ + LQ+ + N +R N L + R L Y +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENC 246
Query: 234 ILI-------EIFK----KCGRKVCVDSRKMEVLRVLGYG---------DSGVFTEDESE 273
+L+ + + C K+ + +R +V L S T DE +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 274 T------------------DVH--VVGWNEIMVERGYDKVVGFVPTGWTY--EVKRNKFA 311
+ + + I+ E D W V +K
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDG-----LATWDNWKHVNCDKLT 356
Query: 312 VRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRV-IPT--------------VGMDIEK 356
+ + L P +D L F P IPT V + + K
Sbjct: 357 TIIESSLN-VLEPAEYRKMFDRL---SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 357 LDS-----KHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDE-NVEEGAGSGSNEGLS 410
L K + + E+ K E HR S +D N+ + ++ L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTF---DSDDLI 465
Query: 411 KEGE---------------------------------VKSK-KTKATEDSSSSILLDSSS 436
++ K + +T ++S +L++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 437 RLEEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHE 496
+L+ + K +D + E++V I + LP +LI S +++ ++ E E
Sbjct: 526 QLKFY--KPYICDNDPKYERLVNAILDFLPKIEE-----NLICSKYTDLLR-IALMAEDE 577
Query: 497 TQLYEQEYK 505
++E+ +K
Sbjct: 578 A-IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 107/676 (15%), Positives = 202/676 (29%), Gaps = 192/676 (28%)
Query: 554 FNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATL 613
+ +L V + +C KD + + + EEID + + TL
Sbjct: 18 YKDILSVFED-AFV--DNFDC-KDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTL 71
Query: 614 LEKTKGNVSM----ALDLYYD-----NQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALE 664
L K + V L + Y + R ++ + + Q D D
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYND------ 122
Query: 665 KIVSEELQHITDMSVQRPSKEL-MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFD 723
Q +V R L + L+ L P K I SG+ + + ++
Sbjct: 123 ------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYK 175
Query: 724 LVEAERGKIKAMSM-LCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENIELNIGGSLVT 781
+ KI +++ CN SP+ VL L +I N
Sbjct: 176 VQCKMDFKIFWLNLKNCN--------SPETVLEMLQKLLY-QIDPNW------------- 213
Query: 782 SAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPP--LLI-KDVYS------ 832
++ + + +I + L L L + P LL+ +V +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRL------------LKSKPYENCLLVLLNVQNAKAWNA 261
Query: 833 --MLCKISVQTGSGSTA-------RKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAM-- 881
+ CKI + T + + + E+K L+ + + R +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPR 320
Query: 882 -MRTILPALAQAVVMNSSLEFSHEGKM--ENLK----EKLQSLSAAAVEAYNILPSLDLL 934
+ T P +++ E +G +N K +KL + +E+ SL++L
Sbjct: 321 EVLTTNP-RRLSIIA----ESIRDGLATWDNWKHVNCDKLTT----IIES-----SLNVL 366
Query: 935 IPSLMNKGIGFSASTLSMVP-GVPIKPML------AKITNGVPQVLKLFQNKAFTCEYKY 987
P+ K F LS+ P I +L I + V V+ +
Sbjct: 367 EPAEYRKM--FDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS------- 415
Query: 988 DGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLI---------------SIINEFCKPAAG 1032
LV+ + E+T P + SI++ + P
Sbjct: 416 ---------LVE-------KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT- 458
Query: 1033 TFILDAEVVAIDRKNGCKIMSFQ----ELSSRERGGKDSVITIKSVKVDICVFVFDIMFA 1088
D++ + + + L + E + ++ + VF D F
Sbjct: 459 ---FDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPERMTLFRM--------VF-LDFRFL 503
Query: 1089 NGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEA 1148
+ T + + K Y + DN + ++ I +FL
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKF----YKPYIC----DNDPKYERLVNAILDFLP-- 553
Query: 1149 LHSSCEGIIVKSLDVD 1164
E ++ S D
Sbjct: 554 ---KIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-11
Identities = 105/673 (15%), Positives = 180/673 (26%), Gaps = 220/673 (32%)
Query: 438 LEEFGSKDV-----TALDDEETEKMVQEIRNCLPTWVTQN-QILDLISSSGRNIV----- 486
++ F KDV + L EE + ++ V+ ++ + S +V
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMS-----KDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 487 DAVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPK-KKGKVPSK------ 539
+ + Y+ + E + P S+ + + +R + +N K V
Sbjct: 85 EVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 540 -----------------MESSGAKQ----------PTITSFFNKL--LPNMSQGDVVESK 570
+ SG K K+ L N+ +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWL-NLKN----CNS 194
Query: 571 SEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYD 630
E + L + D I S++ LL+ + L L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVL--L 251
Query: 631 NQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHIT--DMSVQRPSKELMD 688
N + + K N S C KI+ +T V D
Sbjct: 252 NVQ-NA-KAWNAFNLS------------C-----KIL------LTTRFKQV-------TD 279
Query: 689 PTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLAL 748
L I H + T E + ++ L
Sbjct: 280 ----FLSAATTTHI-----------SLDHHSMTLTPDEVK-----------SLLLKYLDC 313
Query: 749 SPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDV 808
P D LP E+ S I E IRD + V
Sbjct: 314 RPQD-LPR---------------EVLTTNPRRLSIIAE-------SIRDGLATWDNWKHV 350
Query: 809 AQECRQTQAL---LAPPPPLLIKDVYSMLC------KISVQTGS----GSTARKKSLIVN 855
+ + T + L P + ++ L I S ++VN
Sbjct: 351 NCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQ 915
+ LV + I +P S+ + K+EN +
Sbjct: 410 KLHK------YSLVEKQPKESTIS------IP----------SIYLELKVKLENEYALHR 447
Query: 916 SLSAAAVEAYNI---LPSLDLLIPSLMN---KGIGFSASTLSMVPGVPIKPML------- 962
S+ V+ YNI S DL+ P L IG + + + M+
Sbjct: 448 SI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 963 -AKI------TNGVPQVLKLFQN----KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 1011
KI N +L Q K + C+ + +LV+ + F +E
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-----NDPKYERLVNAILD-FLPKIEE 557
Query: 1012 TT--SRFPDLISI 1022
S++ DL+ I
Sbjct: 558 NLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 7e-08
Identities = 87/599 (14%), Positives = 157/599 (26%), Gaps = 204/599 (34%)
Query: 641 NRLEFSKSSVQSDSCNKDCSSALEKIVSEELQH-ITDMSVQRPSKELMDPTLVSLPPEKY 699
+ ++F + KD I+S + + K++ D L E+
Sbjct: 5 HHMDFETG--EHQYQYKD-------ILSVFEDAFVDNFDC----KDVQDMPKSILSKEEI 51
Query: 700 DPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYL 759
D I R F + +++ ++ + ++VL Y
Sbjct: 52 DHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------------EEVLRINY- 91
Query: 760 CTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMY----NRLGDLGDVAQE---C 812
+ S I+ S + MY +RL + V +
Sbjct: 92 ------------------KFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 813 RQ------TQALL-APPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEM 865
R QALL P ++ + +L GSG K+ + +C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVL--IDGVL-------GSG-----KTWVALDVC------- 171
Query: 866 KFLVRTLVRNLRIGAMMRTILPALAQAVVMNSS---LEFSHEGKMENLKEKLQSLSAAAV 922
+ ++ M + L + E + E LQ L
Sbjct: 172 --------LSYKVQCKM-------------DFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 923 EAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGV--PQVLKLFQNKA 980
+ I ++ L P +L + V + F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLL--VLLNVQNAKAWNAFNLSC 266
Query: 981 ---FTCEYK-----YDGQRAQIHKLVDG--------TVRIFS-----RNGD---ETTSRF 1016
T +K L + R D E +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1017 PDLISIINEFCKPAAGTFILDA-EVVAIDRKNGCKIMSFQELSSRE-RGG-KDSVITIKS 1073
P +SII E + T+ D + V D+ S L E R + S
Sbjct: 327 PRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 1074 VKVD---ICVF--------VFDIMFANGEQLLGYTLRQRRK-----YLKDLFYDEKMGYF 1117
+ + + V ++ +L Y+L +++ + ++ + K+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVV----NKLHKYSLVEKQPKESTISIPSIYLELKV--- 437
Query: 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
K+ N E ALH S VD Y+ K DS
Sbjct: 438 ----------------------KLEN--EYALHRSI---------VDH-YNIPKTFDSD 462
|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 55/218 (25%)
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD-- 1010
+PG P + + +G+ ++F+ F E K DG ++ G + +R G
Sbjct: 72 IPGFPHIKRIINLRSGIR---RIFKRGEFYVEEKVDGYNVRVVM-YKGKMLGITRGGFIC 127
Query: 1011 -ETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVI 1069
TT R PD + + IL E+ G +S
Sbjct: 128 PFTTERIPDF---VPQEFFKDNPNLILVGEMA----------------------GPESPY 162
Query: 1070 TIKS---VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLK--DLFYDEKMGYFQYAKEMT 1124
++ VK DI F+FD+ + L +R K + + + E G +
Sbjct: 163 LVEGPPYVKEDIQFFLFDVQEIKTGRSLPV--EERLKIAEEYGINHVEVFGKYTKDD--- 217
Query: 1125 VEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162
+ ++ +E EGII+KS D
Sbjct: 218 -------------VDELYQLIERLSKEGREGIIMKSPD 242
|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 8e-10
Identities = 48/225 (21%), Positives = 75/225 (33%), Gaps = 52/225 (23%)
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNG--- 1009
+ G P + + G+ + F+ F E K DG +I K SR G
Sbjct: 51 IWGYPHIGRIFLLETGLR---EQFEAP-FWVEEKVDGYNTRIFK-YGDNYYALSRGGFIC 105
Query: 1010 DETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVI 1069
TT R PDLI + ++ AEV G ++
Sbjct: 106 PFTTDRLPDLI---DLRILDENPDLVICAEVA----------------------GPENPY 140
Query: 1070 TIKS---VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126
+S VK D+ +FVFD M N + L ++ + + EK VE
Sbjct: 141 IEESPPYVKEDVQLFVFDFMKKNEQGFLSQ--EEKMELI------EKYNLPH------VE 186
Query: 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171
S+ + KI L+ EG++ K + +K
Sbjct: 187 ILGRFTASEEGIKKIKEILKRFNEEGREGVVFK--EDSERNKRAK 229
|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 34/164 (20%)
Query: 44 VPNTRFLIDA--------FRYAADFSVSY-FLSHFHSDHYTGLSP--------SWSKGI- 85
R L+D +Y + LSH+H DH + S +KG
Sbjct: 50 HDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQL 109
Query: 86 ----IFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKV 141
I+ + + P + + I + + H
Sbjct: 110 PELPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITA 169
Query: 142 PGRNGGFERYVHTGDFRFCKTMLLQPVMNEFA-GCDAVFLDTTY 184
V++ D + + F D +
Sbjct: 170 GND-----IVVYSADSSYIPEFI------PFTKDADLFICECNM 202
|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 56/221 (25%)
Query: 41 SKHV---PNTRFLIDA--------------FRYAADFSVSY----FLSHFHSDHYTGLSP 79
S PN+R L+D + +F++ ++H H DH +G P
Sbjct: 194 SCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDH-SGFLP 252
Query: 80 ----SWSKGIIFCSEITSRLLS----------------------QILNINPKFIYPLPIK 113
G ++C+ T L++ + I L
Sbjct: 253 YLYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTI-TLDYG 311
Query: 114 IPV-LIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEF 172
+ + L A H G+ + G V+TGDF++ ++ LL+ N F
Sbjct: 312 EVTDIAPDIRLTLHNAGHILGSAMAHLHIGD---GQHNMVYTGDFKYEQSRLLEAAANRF 368
Query: 173 AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV---GG 210
+ + +++TY + + P + + + +V + GG
Sbjct: 369 PRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGG 409
|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 55/220 (25%)
Query: 41 SKHV---PNTRFLIDA-------------FRYAADFSVSY----FLSHFHSDHYTGLSP- 79
S + P +R LID F ++ ++H H DH GL P
Sbjct: 198 SCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDH-QGLVPL 256
Query: 80 ---SWSKGIIFCSEITSRLLS----------------------QILNINPKFIYPLPIKI 114
+G ++C+ T L+ + I PL +
Sbjct: 257 LFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTI-PLDYEE 315
Query: 115 PV-LIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFA 173
+ ++ A H G+ F + G V TGD+++ KT L P +N+F
Sbjct: 316 VTDIAPDIKLTFHNAGHILGSAISHFHIGD---GLHNVVFTGDYKYEKTRLFDPAVNKFP 372
Query: 174 GCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV---GG 210
+ V + TY N P +++ +++ VV GG
Sbjct: 373 RVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGG 412
|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 54/215 (25%)
Query: 27 DSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSK--- 83
P +DA ++H H DH G+ P +
Sbjct: 233 PHFDAPEFQYVLREGL--------LDAI----------IITHAHLDH-CGMLPYLFRYNL 273
Query: 84 --GIIFCSEITSRLLS----------------------QILNINPKFIYPLPIKIPV-LI 118
G I+ + T L+ I + I L +
Sbjct: 274 FDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTI-TLDYGEVRDIS 332
Query: 119 DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAV 178
+ L A H G+ + G TGDF+F T LL+P +F + +
Sbjct: 333 PDIRLTLHNAGHILGSAIVHLHI---GNGLHNIAITGDFKFIPTRLLEPANAKFPRLETL 389
Query: 179 FLDTTYCNPKFLFPLQEESVEYVVNVVNRV---GG 210
+++TY + +EE+ + ++ V++ GG
Sbjct: 390 VMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGG 424
|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 52/189 (27%)
Query: 41 SKH---VPNTRFLIDA-----------FRYAADFSVSY----FLSHFHSDHYTGLSPSWS 82
S + ++D Y + +SHFH DH G P +
Sbjct: 26 SCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDH-CGALPWFL 84
Query: 83 -----KGIIFCSEITSRLLS----------------------QILNINPKFIYPLPIKIP 115
KG F + T + + K +
Sbjct: 85 QKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE-TINFHEV 143
Query: 116 VLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGC 175
+ G + A H GA F+ ++ G + ++TGDF + L
Sbjct: 144 KEVAGIKFWCYHAGHVLGAAMFMIEIAGV-----KLLYTGDFSRQEDRHLMAAEIPNIKP 198
Query: 176 DAVFLDTTY 184
D + +++TY
Sbjct: 199 DILIIESTY 207
|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 54/385 (14%), Positives = 114/385 (29%), Gaps = 74/385 (19%)
Query: 17 LFLSTQSSPPDSLIFPPIPRTFPPSKHV--PNTRFLIDAFRYAADFSVSYFLSHFHSDHY 74
F P D + R P K + P + + FLSH H DH
Sbjct: 39 EFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHS 98
Query: 75 TGLSPSWSKGIIFCSEITSRLL------SQILNINPKFIYPLPIKIPVLIDGCEVVLVGA 128
++ ++ + T +L L +P ++ L +V+ VG
Sbjct: 99 RMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKN-DVIKVGE 157
Query: 129 --------NH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPV--MNEFAGCDA 177
+H GA L + P +TGD R + + + +
Sbjct: 158 ISVEIVPVDHDAYGASALLIRTPDH-----FITYTGDLRLHGHNREETLAFCEKAKHTEL 212
Query: 178 VFLDTTYC------NPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGK 231
+ ++ + E +V + E +++ Y
Sbjct: 213 LMMEGVSISFPEREPDPAQIAVVSEED-----LVQHLVRLELENPNRQI--TFNGYPANV 265
Query: 232 EKILIEIFKKCGRKVCVDSRKMEVL-----RVLGY--GDSGVFTEDESETDVHVVGWNEI 284
E+ +I +K R V +++ +L + Y +SG E + ++ +
Sbjct: 266 ERFA-KIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELN---PALEIPYDTL 321
Query: 285 MV----------------ERGYDKVV---GFVP--TGWTYEVKRNKFAVRSKDAFEIHLV 323
+ + G + Y V + A + +
Sbjct: 322 LKDKTDYLWQVVNQFDNLQEG-SLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLAC- 379
Query: 324 PYSEHSNYDELREYVKFLKPKRVIP 348
S H+ ++L + + ++P+ ++P
Sbjct: 380 --SGHAIPEDLDKIIALIEPQVLVP 402
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 47/183 (25%)
Query: 41 SKHV---PNTRFLIDA--------FRYAADFSVSY------FLSHFHSDHYTGLSPSWSK 83
S H+ R L+D R A F L+H H DH G P +
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDH-VGRLPKLFR 73
Query: 84 ----GIIFCSEITSRLLS------------------QILNINPKFIYPLPIKIPVLIDGC 121
G ++ + T L+ + PL + +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLR-PLEYGEWLRLGAL 132
Query: 122 EVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLD 181
+ A H PG+ + + GR V++GD + +L + D V +
Sbjct: 133 SLAFGQAGHLPGSAFVVAQGEGR-----TLVYSGDLGNREKDVLPD-PSLPPLADLVLAE 186
Query: 182 TTY 184
TY
Sbjct: 187 GTY 189
|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 15/121 (12%)
Query: 47 TRFLIDAFRYAADFSVSY-FLSHFHSDHYTGLSPSWSKGI-IFCSEITSRLLSQILNINP 104
T +++ + + V+ ++H H D G+ + GI + + ++++L Q +
Sbjct: 98 TAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAA 157
Query: 105 KFIYPLPIKIPV------LIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158
+ V +V G H + G G
Sbjct: 158 QHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGI--DG-----TDIAFGGCLI 210
Query: 159 F 159
Sbjct: 211 K 211
|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 9/115 (7%)
Query: 47 TRFLIDAFRYAADFSVSY-FLSHFHSDHYTGLSPSWSKGI-IFCSEITSRLLSQILNINP 104
+ D V +H H D GL G + +++T +L++
Sbjct: 50 FKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRA 109
Query: 105 KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159
++ + V +V G H V F E+ + G
Sbjct: 110 QYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPK-------EKVLVGGCIIK 157
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1176 | |||
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 100.0 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 100.0 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 100.0 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 100.0 | |
| 3l2p_A | 579 | DNA ligase 3; DNA ligase, DNA repair, ATP-binding, | 100.0 | |
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 100.0 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 100.0 | |
| 1vs0_A | 310 | Putative DNA ligase-like protein RV0938/MT0965; OB | 100.0 | |
| 4htp_A | 240 | DNA ligase 4; helical domain, DNA binding domain, | 100.0 | |
| 1a0i_A | 348 | DNA ligase; DNA replication; HET: DNA ATP; 2.60A { | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 99.98 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 99.98 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 99.97 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 99.97 | |
| 1fvi_A | 297 | Chlorella virus DNA ligase-adenylate; adenylated D | 99.96 | |
| 3vnn_A | 139 | DNA ligase 4; non-homologous END joining, DNA repa | 99.95 | |
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 99.88 | |
| 1ckm_A | 330 | MRNA capping enzyme; nucleotidyltransferase; HET: | 99.87 | |
| 1p16_A | 395 | GTP--RNA, mRNA capping enzyme alpha subunit; guany | 99.85 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.79 | |
| 3kyh_C | 461 | MRNA-capping enzyme subunit alpha; 5' modification | 99.79 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.77 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.77 | |
| 3rtx_A | 343 | MRNA-capping enzyme; guanylyltransferase, RNA poly | 99.76 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.7 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.68 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.67 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.65 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.58 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 99.46 | |
| 2vug_A | 389 | PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe | 99.43 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 99.39 | |
| 3qwu_A | 370 | DNA ligase; structural genomics, PSI-2, midwest ce | 99.29 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 99.26 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 99.25 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 99.15 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.14 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 99.12 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 99.09 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 99.09 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.08 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.06 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 99.05 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.04 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 99.03 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 99.01 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 98.99 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 98.99 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 98.96 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 98.96 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 98.94 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 98.94 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 98.93 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 98.93 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 98.91 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 98.9 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 98.89 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 98.89 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 98.88 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 98.88 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 98.85 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 98.84 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 98.82 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 98.81 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 98.79 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 98.78 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 98.77 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 98.76 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 98.75 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 98.74 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 98.74 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 98.73 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 98.71 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 98.68 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 98.67 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 98.66 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 98.65 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 98.46 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 98.44 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 98.16 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 98.15 | |
| 1ta8_A | 332 | DNA ligase, NAD-dependent; nucleotidyl transferase | 98.11 | |
| 1b04_A | 318 | Protein (DNA ligase); DNA replication; 2.80A {Geob | 98.05 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 97.26 | |
| 1zau_A | 328 | DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu | 97.61 | |
| 1s68_A | 249 | RNA ligase 2; ribonucleic acid ligase, RNA repair; | 97.59 | |
| 4glw_A | 305 | DNA ligase; inhibitor, ligase-ligase inhibitor com | 97.58 | |
| 2hvq_A | 335 | ORF1, hypothetical 37.6 kDa protein in GP24-HOC in | 97.56 | |
| 3uq8_A | 322 | DNA ligase; adenylated protein, ATP-grAsp, rossman | 97.18 | |
| 3jsl_A | 318 | DNA ligase; NAD+-dependent, DNA damage, DNA repair | 97.15 | |
| 4e6n_A | 427 | Metallophosphoesterase; RNA repair, RNA ligase, li | 97.07 | |
| 4glx_A | 586 | DNA ligase; inhibitor, ligase-ligase inhibitor-DNA | 96.78 | |
| 1xk5_A | 204 | Snurportin-1; protein-RNA-complex, transport prote | 96.74 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 96.2 | |
| 3gjx_B | 365 | Snurportin-1; transport, cytoplasm, nucleus, RNA-b | 96.18 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 96.13 | |
| 1xdn_A | 277 | RNA editing ligase MP52; HET: MSE ATP; 1.20A {Tryp | 96.05 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 95.89 | |
| 3sgi_A | 615 | DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub | 95.76 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 95.18 | |
| 2dah_A | 54 | Ubiquilin-3; UBA domain, structural genomics, NPPS | 94.03 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 93.52 | |
| 2dal_A | 62 | Protein KIAA0794; FAS associted factor 1, UBA-like | 93.1 | |
| 2c5u_A | 375 | RNA ligase, T4 RNA ligase 1; nucleotidyl transfera | 93.04 | |
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 93.02 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 92.7 | |
| 1v92_A | 46 | NSFL1 cofactor P47; 3-helix bundle, recombination; | 92.35 | |
| 1vej_A | 74 | Riken cDNA 4931431F19; UBA domain, three helix bun | 92.13 | |
| 1wr1_B | 58 | Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu | 91.83 | |
| 2bwb_A | 46 | Ubiquitin-like protein DSK2; UBA, signaling protei | 91.65 | |
| 2jy5_A | 52 | Ubiquilin-1; UBA, alternative splicing, cytoplasm, | 91.19 | |
| 2knz_A | 53 | Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc | 90.19 | |
| 2dzl_A | 66 | Protein FAM100B; UBA-like domain, structural genom | 89.82 | |
| 1vg5_A | 73 | RSGI RUH-014, rhomboid family protein; UBA domain, | 87.79 | |
| 2dam_A | 67 | ETEA protein; KIAA0887, UBA-like domain, structura | 87.78 | |
| 1z96_A | 40 | DNA-damage, UBA-domain protein MUD1; ubiquitin, th | 87.2 | |
| 2dna_A | 67 | Unnamed protein product; ubiquitin associated doma | 85.08 | |
| 4htp_A | 240 | DNA ligase 4; helical domain, DNA binding domain, | 84.85 | |
| 1wiv_A | 73 | UBP14, ubiquitin-specific protease 14; ubiquitin a | 83.04 | |
| 1veg_A | 83 | NEDD8 ultimate buster-1; ubiquitin associated doma | 80.99 |
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-83 Score=789.12 Aligned_cols=469 Identities=39% Similarity=0.714 Sum_probs=419.5
Q ss_pred ccCCCCCCCcccccccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccc
Q 001045 692 VSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI 771 (1176)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~ 771 (1176)
.+.+...|+|..++||..|++|||..||++|++|++|++|++|+++|++||+.++..+|+|+.+++||++|+|+|+|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~ 114 (688)
T 1x9n_A 35 YNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGL 114 (688)
T ss_dssp CCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCC
T ss_pred cccCcccCCccccccccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCcccccc
Confidence 66789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHH
Q 001045 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKS 851 (1176)
Q Consensus 772 elgige~~L~kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~ 851 (1176)
+||||+++|++++++++|++.+.+++.|++.||||+||+.++++|+++.++++|||.+|++.|++||..+|++|+.+|..
T Consensus 115 elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~ 194 (688)
T 1x9n_A 115 ELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKID 194 (688)
T ss_dssp CCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred ccCcChHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHH
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCccccc--------ccccchhHHHHHHHHHHHHHHH
Q 001045 852 LIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEF--------SHEGKMENLKEKLQSLSAAAVE 923 (1176)
Q Consensus 852 il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~v~~ 923 (1176)
+|..||.+|++.|++||+|+|+++||||+++++|+.|||+||.++++... ....+.+.+++.++.....+++
T Consensus 195 ~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (688)
T 1x9n_A 195 IIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQ 274 (688)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987752110 0111234566778888889999
Q ss_pred HHhhCCChHHHHHHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEE
Q 001045 924 AYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003 (1176)
Q Consensus 924 ay~~~pdl~~v~~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ 1003 (1176)
+|+.+|||+.|++.|++.|+..+...|.++||+|++||||+++++++++++++++..|++|+||||+|||+|++.+|.|+
T Consensus 275 ~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~ 354 (688)
T 1x9n_A 275 TFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVK 354 (688)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEE
T ss_pred HHhhCCCHHHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEE
Confidence 99999999999999998887666678999999999999999999999999999989999999999999999996567899
Q ss_pred EEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEE
Q 001045 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVF 1083 (1176)
Q Consensus 1004 ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vF 1083 (1176)
+|||+|+++|.+||++.+.++.++.+...++|||||||+||+.+| +++|||.|++|.|+.. .......+++|++|
T Consensus 355 l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g-~~~~F~~L~~r~r~~~----~~~~~~~~v~~~vF 429 (688)
T 1x9n_A 355 IFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEV----DASEIQVQVCLYAF 429 (688)
T ss_dssp EECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTC-SBCCHHHHTTSCSSCC----CGGGCCSEEEEEEE
T ss_pred EEeCCCCcccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCC-CcCCHHHHHHHhhccc----chhhcccceEEEEE
Confidence 999999999999999999988877666789999999999997664 7899999999976532 22344678999999
Q ss_pred EeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCC
Q 001045 1084 DIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDV 1163 (1176)
Q Consensus 1084 DiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~ 1163 (1176)
||||+||++|+++||.+||++|++++ .+.++++.++++..+ .+.++++++|+++++.|+||||+|+++.
T Consensus 430 DlL~l~G~~l~~~Pl~eRr~~L~~~~-~~~~~~i~~~~~~~~----------~~~~~~~~~~~~a~~~g~EGlV~K~~~~ 498 (688)
T 1x9n_A 430 DLIYLNGESLVREPLSRRRQLLRENF-VETEGEFVFATSLDT----------KDIEQIAEFLEQSVKDSCEGLMVKTLDV 498 (688)
T ss_dssp EEEEETTEECTTSCHHHHHHHHHHHB-CCBTTTEEECCEECC----------CCHHHHHHHHHHHHHTSEEEEEEEESSS
T ss_pred echhhcCCccccCCHHHHHHHHHHhh-ccCCCcEEEEeeEec----------CCHHHHHHHHHHHHhcCCceeEEeeccc
Confidence 99999999999999999999999999 555678999887653 5789999999999999999999999933
Q ss_pred CCCcccCCCCCCC
Q 001045 1164 DAGYSPSKRSDSW 1176 (1176)
Q Consensus 1164 ~s~Y~pGkRs~~W 1176 (1176)
+|+|+||+|+.+|
T Consensus 499 ds~Y~~GkRs~~W 511 (688)
T 1x9n_A 499 DATYEIAKRSHNW 511 (688)
T ss_dssp SCSSCTTTCSEEE
T ss_pred CCCCCCCCcCchH
Confidence 4999999999888
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-77 Score=729.96 Aligned_cols=430 Identities=30% Similarity=0.489 Sum_probs=380.3
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccc-ccccchhhHHHH
Q 001045 705 ACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-ELNIGGSLVTSA 783 (1176)
Q Consensus 705 ~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~-elgige~~L~ka 783 (1176)
..|+.|++|||..||++|++|++|++|++|+++|++||+.. +|+++.+++||++|+|+|+|+++ +||||+++|+++
T Consensus 13 ~~~~~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~ 89 (621)
T 2hiv_A 13 GLVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKA 89 (621)
T ss_dssp --------CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS---CGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCcCcccccccccCCCHHHHHHH
Confidence 36999999999999999999999999999999999999995 78999999999999999999998 999999999999
Q ss_pred HHHHhCCChHHHHHHHHhcCChHHHHHHHHhhcc--cc------CCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 001045 784 IEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA--LL------APPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVN 855 (1176)
Q Consensus 784 l~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~--~l------~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~ 855 (1176)
+++++|++++.+++.|++.||||+||+.+++++. ++ .++++|||.+|++.|++||..+|++|+.+|..+|..
T Consensus 90 ~~~~~g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ 169 (621)
T 2hiv_A 90 ISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAG 169 (621)
T ss_dssp HHHHHTCCHHHHHHHHHHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999998765 33 257889999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 001045 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLI 935 (1176)
Q Consensus 856 Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~ 935 (1176)
||.+|++.|++||+|+|+++||||+++++|+.|||+||.... ..++.++++|+.+|||+.||
T Consensus 170 ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~------------------~~~~~v~~~~~~~~dl~~v~ 231 (621)
T 2hiv_A 170 LLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQ------------------SASEIIERAYNLRADLGNIA 231 (621)
T ss_dssp HHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSG------------------GGHHHHHHHHHHSCCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhcccc------------------ccHHHHHHHHhcCCCHHHHH
Confidence 999999999999999999999999999999999999987321 13578999999999999999
Q ss_pred HHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCC
Q 001045 936 PSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR 1015 (1176)
Q Consensus 936 ~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ 1015 (1176)
+.|.+.|++.+ ..+.++||+|++||||+++++++++++++++ +|++|+||||+|||+|+ .+|.|++|||||+++|.+
T Consensus 232 ~~l~~~g~~~l-~~~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~-~g~~v~l~SR~g~~~t~~ 308 (621)
T 2hiv_A 232 KIIVEKGIEAL-KTLKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHK-KEDKIFIFSRRLENITSQ 308 (621)
T ss_dssp HHHHHHCGGGG-TTCCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEE-ETTEEEEECTTCCBCGGG
T ss_pred HHHHhcCcccc-ccCCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEE-cCCEEEEEcCCCcCcHhh
Confidence 99998887544 7899999999999999999999999988865 89999999999999999 589999999999999999
Q ss_pred chhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCccccc
Q 001045 1016 FPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLG 1095 (1176)
Q Consensus 1016 ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~ 1095 (1176)
||++.+.+.+.+ ...+||||||||+||+++| +++|||.|++| ++... +.......++||++|||||+||++|++
T Consensus 309 fP~l~~~~~~~l--~~~~~iLDGElv~~d~~~g-~~l~F~~L~~r-~~~~~--~~~~~~~~~v~~~vFDlL~l~G~~l~~ 382 (621)
T 2hiv_A 309 YPDVVDYVSKYI--EGKEFIIEGEIVAIDPESG-EMRPFQELMHR-KRKSD--IYEAIKEYPVNVFLFDLMYYEDVDYTT 382 (621)
T ss_dssp CHHHHHHHHHHB--CCSSEEEEEEEEEBCTTTC-CBCCTHHHHHH-HHCSC--HHHHHHHSCEEEEEEEEEEETTEECTT
T ss_pred hhhHHHHHHHhC--CCcCeEEeEEEEEeecCCC-CcCCHHHHhhh-ccccc--hhhhcccCceEEEEEeccccCCCcccc
Confidence 999999887654 2579999999999997665 78999999999 32222 223334678999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCC
Q 001045 1096 YTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDS 1175 (1176)
Q Consensus 1096 ~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~ 1175 (1176)
+||.+||++|++++ .+ .+++.++++..+ .+.++++++|+++++.|+||||+|+++.+|+|+||+|+.+
T Consensus 383 ~pl~eRr~~L~~~~-~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~ 450 (621)
T 2hiv_A 383 KPLEARRKLLESIV-KP-NDYVKIAHHIQA----------NNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWL 450 (621)
T ss_dssp SCHHHHHHHHHHHB-CC-CSSEEECCEEEE----------SSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEE
T ss_pred CCHHHHHHHHHHHh-Cc-CCcEEEeeeEEe----------CCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCC
Confidence 99999999999999 44 378999988765 5789999999999999999999999933399999999988
Q ss_pred C
Q 001045 1176 W 1176 (1176)
Q Consensus 1176 W 1176 (1176)
|
T Consensus 451 W 451 (621)
T 2hiv_A 451 W 451 (621)
T ss_dssp E
T ss_pred e
Confidence 8
|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-76 Score=713.69 Aligned_cols=415 Identities=26% Similarity=0.438 Sum_probs=374.4
Q ss_pred CCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCC-ChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHh
Q 001045 710 GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPD-DVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEAC 788 (1176)
Q Consensus 710 g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~-dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~ 788 (1176)
|..|+|..||++|++|++|++|++|+++|++||+.+ +|+ ++.+++||++|+++|+|++++||||+++|++++++++
T Consensus 1 ~~~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~ 77 (558)
T 3gde_A 1 GSHMLFAEFAEFCERLEKISSTLELTARIAAFLQKI---EDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVS 77 (558)
T ss_dssp CCSCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTC---CSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHH
Confidence 346999999999999999999999999999999997 676 8899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHh--hccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHH
Q 001045 789 GTNRSKIRDMYNRLGDLGDVAQECRQ--TQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866 (1176)
Q Consensus 789 g~~~~~i~~~~~~~GDlG~va~~~~~--~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k 866 (1176)
|++++.+++.|++.||+|++|+.+.+ .|.++. +++|||.+|++.|++||..+|++|+.+|..+|..||.+|++.|+|
T Consensus 78 g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~ 156 (558)
T 3gde_A 78 GVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLA-FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEAR 156 (558)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHSCC-CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CcCHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC-CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999753 455554 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCC
Q 001045 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFS 946 (1176)
Q Consensus 867 ~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~ 946 (1176)
||+|+|+|+||||+++++|+.|||+||.+++ +.++++|+.+|||+.||+.|.+.|.+.
T Consensus 157 ~l~rli~~~lRiG~~~~~vl~ala~a~~~~~---------------------~~~~~~~~~~~dl~~v~~~l~~~g~~~- 214 (558)
T 3gde_A 157 YLTRLILNEMRLGVGEGIMRDAIARAFRADP---------------------ETVERAYMITNDLGRVAVVAKKEGEEG- 214 (558)
T ss_dssp HHHHHHTTCCCSSCCHHHHHHHHHHHTTCCH---------------------HHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccccccccHHHHHHHHHHHhCCCH---------------------HHHHHHhccCCchHHHHHHHhhcCccc-
Confidence 9999999999999999999999999997654 578899999999999999998777543
Q ss_pred ccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhh
Q 001045 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEF 1026 (1176)
Q Consensus 947 ~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~ 1026 (1176)
+..+.++||+|++||||+++++++++++++ .+|++|+||||+|||+|+ .+++|++|||||+++|.+||++++.+...
T Consensus 215 l~~~~~~~~~p~~PmLA~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~-~g~~v~l~SR~g~d~t~~fPel~~~~~~~ 291 (558)
T 3gde_A 215 LRKMKIEIHIPVRMMLAQVAESLESAVREM--RTAAVEWKFDGSRVQVHW-DGSRVTIYSRRLENVTNALPDIVEEIKKS 291 (558)
T ss_dssp HHTCCCCTTSCCCCCEEEECSCHHHHHHHS--SSEEEEEECSSEEEEEEE-CSSCCEEEETTCCBCGGGCHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCeeCCcCCChHHHhhhc--cceEEEEeEeeEEEEEEE-eCCEEEEEcCCCCcccccchHHHHHHHhh
Confidence 346999999999999999999999988887 479999999999999999 58899999999999999999999999885
Q ss_pred cCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHH
Q 001045 1027 CKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLK 1106 (1176)
Q Consensus 1027 ~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~ 1106 (1176)
+. .+||||||||+|+ +| +++|||.|++|.++... +.....+.|++|++|||||+|| +|+++||.+||++|+
T Consensus 292 l~---~~~iLDGElv~~~--~g-~~~~F~~L~~r~~~~~~--~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~ 362 (558)
T 3gde_A 292 VK---PGVILDGEVIAVK--EG-KPMPFQHVLRRFRRKHD--VAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLE 362 (558)
T ss_dssp BC---SSEEEEEEEEEEE--TT-EEECHHHHHHHHHC--C--THHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHH
T ss_pred CC---CCeEEEeEEEEcC--CC-cCCCHHHHHHHhccccc--hhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHH
Confidence 42 3499999999994 44 78899999999765332 2222346789999999999999 999999999999999
Q ss_pred HhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1107 DLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1107 ~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+++ .. ++++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+||.+|
T Consensus 363 ~~~-~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 418 (558)
T 3gde_A 363 SAV-NE-SEKIKLAKQIVT----------DSVDEVRKMYDEAISAGHEGVMIKLPS--SPYIPGKRGKNW 418 (558)
T ss_dssp HHB-CC-CSSEEECCEEEE----------SCHHHHHHHHHHHHHTTCCEEEEECTT--CBCCTTCEEEEE
T ss_pred Hhc-CC-CCeEEEeeeEec----------CCHHHHHHHHHHHHHcCCceeEEecCC--CCCCCCCcCCce
Confidence 999 43 678999888764 578999999999999999999999998 999999999888
|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-75 Score=707.01 Aligned_cols=416 Identities=25% Similarity=0.430 Sum_probs=378.9
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCCh
Q 001045 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNR 792 (1176)
Q Consensus 713 ~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~ 792 (1176)
|||..||++|++|++|++|++|+++|++||+.. +|+|+.+++||++|+++|+|++++||||+++|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS---CGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH
Confidence 689999999999999999999999999999995 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcc--ccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHH
Q 001045 793 SKIRDMYNRLGDLGDVAQECRQTQA--LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVR 870 (1176)
Q Consensus 793 ~~i~~~~~~~GDlG~va~~~~~~q~--~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvR 870 (1176)
+.+++.|++.||+|++|+.+++++. ++. +++|||.+|++.|++||..+|++|+.+|..+|..||.+|++.|++||+|
T Consensus 78 ~~~~~~~~~~GDlg~~~~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~r 156 (561)
T 2cfm_A 78 KEIEESVKDTGDLGESIALAVKKKKQKSFF-SQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLAR 156 (561)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTCCC-CCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhccCcCcCcC-CCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999987653 344 3789999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCcccc
Q 001045 871 TLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTL 950 (1176)
Q Consensus 871 iIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~~~~ 950 (1176)
+|+++||||+++++|+.|||+||..+ ++.++++|+.+|||+.||+.|.++|++. +..+
T Consensus 157 li~~~lriG~~~~~vl~ala~a~~~~---------------------~~~v~~~~~~~~~l~~v~~~l~~~g~~~-l~~~ 214 (561)
T 2cfm_A 157 TILGTMRTGVAEGLLRDAIAMAFHVK---------------------VELVERAYMLTSDFGYVAKIAKLEGNEG-LAKV 214 (561)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHTTCC---------------------HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHC
T ss_pred HHhccccccccHHHHHHHHHHHhcCC---------------------HHHHHHHHccCCCHHHHHHHHHhccccc-cccc
Confidence 99999999999999999999999764 3789999999999999999999877642 3478
Q ss_pred CcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCC
Q 001045 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPA 1030 (1176)
Q Consensus 951 ~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~ 1030 (1176)
.++||+|++||||+++++++++++++++ +|++|+||||+|||+|+. +|.|++|||+|+++|.+||++.+.+.+.+ .
T Consensus 215 ~~~~~~P~~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~~l--~ 290 (561)
T 2cfm_A 215 QVQLGKPIKPMLAQQAASIRDALLEMGG-EAEFEIKYDGARVQVHKD-GSKIIVYSRRLENVTRAIPEIVEALKEAI--I 290 (561)
T ss_dssp CCCTTSCCCCCEEEEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHHHHHHHHB--C
T ss_pred CCCCCCCCCCeeCCcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEE-CCEEEEEeCCCCCchhhhhhHHHHHHHhC--C
Confidence 9999999999999999999998888854 799999999999999995 88999999999999999999999888654 2
Q ss_pred CCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhc
Q 001045 1031 AGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110 (1176)
Q Consensus 1031 ~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~ 1110 (1176)
..++|||||||+|| ++| +++||+.|++|.++... +.......+++|++|||||+||++|+++||.+||++|++++
T Consensus 291 ~~~~iLDGElv~~d-~~g-~~~~F~~L~~r~~~~~~--~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~- 365 (561)
T 2cfm_A 291 PEKAIVEGELVAIG-ENG-RPLPFQYVLRRFRRKHN--IEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEII- 365 (561)
T ss_dssp SSEEEEEEEEEEBC-TTS-SBCCTHHHHHHHHCCSC--HHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHB-
T ss_pred CcceEeeeEEEEEc-CCC-cccCHHHHHHHhhcccc--hhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHh-
Confidence 57999999999999 554 78999999999764332 22333467899999999999999999999999999999999
Q ss_pred ccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1111 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+ .+++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+|+.+|
T Consensus 366 ~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 418 (561)
T 2cfm_A 366 KQ-NEKIKVAENLIT----------KKVEEAEAFYKRALEMGHEGLMAKRLD--AVYEPGNRGKKW 418 (561)
T ss_dssp CC-CSSEEECCEEEE----------SCHHHHHHHHHHHHHTTCCEEEEECTT--CCCCTTCEEEEE
T ss_pred Cc-CCcEEEeeeEEc----------CCHHHHHHHHHHHHHcCCceeEEeCCC--CCCCCCCcCCCe
Confidence 43 378999988765 578999999999999999999999998 999999999888
|
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=657.65 Aligned_cols=401 Identities=21% Similarity=0.374 Sum_probs=342.0
Q ss_pred CCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCC
Q 001045 711 QPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGT 790 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~ 790 (1176)
.+|+|.+||++|+.|++|++|++|+++|++||+.+ .+++++...+|+++++|+|+|++++|||++++|.|+|++++|+
T Consensus 5 ~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~--~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g~ 82 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKG--SAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNC 82 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhc--CCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHCc
Confidence 46999999999999999999999999999999986 2456788889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHhh--ccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHH
Q 001045 791 NRSKIRDMYNRLGDLGDVAQECRQT--QALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFL 868 (1176)
Q Consensus 791 ~~~~i~~~~~~~GDlG~va~~~~~~--q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~L 868 (1176)
+.+.+.+.| +.||+|.+|+.+... +.....+++|||.+||+.|++||+.+|++|+. .+|..|+.+|++.|+|||
T Consensus 83 ~~~~~~~~~-~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~---~~l~~l~~~~~~~E~k~l 158 (579)
T 3l2p_A 83 NPDDMARDL-EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQ---QALQDIASRCTANDLKCI 158 (579)
T ss_dssp CHHHHHHHG-GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHH---HHHHHHHTTCCSHHHHHH
T ss_pred CHHHHHHHH-HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHH---HHHHHHHHhCCHHHHHHH
Confidence 999999888 679999999887543 22233467999999999999999998876653 589999999999999999
Q ss_pred HHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccc------
Q 001045 869 VRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKG------ 942 (1176)
Q Consensus 869 vRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g------ 942 (1176)
+|+|+++||||+++++|+.||| +++.++|+.++||+.||+.++..+
T Consensus 159 ~R~i~~~lriG~~e~~vl~a~~----------------------------~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~ 210 (579)
T 3l2p_A 159 IRLIKHDLKMNSGAKHVLDALD----------------------------PNAYEAFKASRNLQDVVERVLHNAQEVEKE 210 (579)
T ss_dssp HHHHTTCCSSSCCHHHHHHTTC----------------------------TTHHHHHHHSCCHHHHHHHHHHHHHSCC--
T ss_pred HHHHHhhhhcccchhHHHHHhC----------------------------HHHHHHHhhcCCHHHHHHHHHhhchhhhcc
Confidence 9999999999999999999864 456799999999999998886532
Q ss_pred --cCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHH
Q 001045 943 --IGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLI 1020 (1176)
Q Consensus 943 --~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~ 1020 (1176)
... ...+.+.+|+||+||||+++++++++++++. ..|++|+||||+|||+|+ .+++|++|||||+++ ||++.
T Consensus 211 ~~~~~-~~~~~~~~~~pv~PMLA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~-~g~~v~l~SR~g~~~---~p~~~ 284 (579)
T 3l2p_A 211 PGQRR-ALSVQASLMTPVQPMLAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHK-NGDHFSYFSRSLKPV---LPHKV 284 (579)
T ss_dssp -------CCCCCCTTSCCCCCEEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEE-ETTEEEEECTTSCBC---CGGGT
T ss_pred ccccc-ccccccCCCCCCCCccCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEE-ECCEEEEECCCCCcc---ChhHH
Confidence 221 2346788999999999999999999998885 468999999999999999 488999999999998 45543
Q ss_pred ----HHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccC
Q 001045 1021 ----SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGY 1096 (1176)
Q Consensus 1021 ----~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~ 1096 (1176)
+.+...+ +...+||||||||+||+++| +++|||.|+.|.++. ....++||++|||||+||++|+++
T Consensus 285 ~~l~~~l~~~~-~~~~~~iLDGElv~~d~~~g-~~~~F~~L~~~~~~~--------~~~~~v~~~vFDlL~l~G~~L~~~ 354 (579)
T 3l2p_A 285 AHFKDYIPQAF-PGGHSMILDSEVLLIDNKTG-KPLPFGTLGVHKKAA--------FQDANVCLFVFDCIYFNDVSLMDR 354 (579)
T ss_dssp TTGGGTHHHHS-TTCSEEEEEEEEEEBCTTTC-CBCCGGGGSHHHHHH--------CSSCCEEEEEEEEEEETTEECTTS
T ss_pred HHHHHHHHHhc-CcCCceEEEeEEEEEeCCCC-cccCHHHHHHHhhhh--------cccCCeEEEEEEeeccCCCccccC
Confidence 4444443 34678999999999998765 789999998774421 123589999999999999999999
Q ss_pred CHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1097 TLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1097 Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
||.+||++|++++ .+.++++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+| +|
T Consensus 355 Pl~eRr~~L~~~~-~~~~~~i~~~~~~~~----------~~~~~~~~~~~~a~~~g~EGlv~K~~d--s~Y~~Grr--~W 419 (579)
T 3l2p_A 355 PLCERRKFLHDNM-VEIPNRIMFSEMKRV----------TKALDLADMITRVIQEGLEGLVLKDVK--GTYEPGKR--HW 419 (579)
T ss_dssp CHHHHHHHHHHHC-CCBTTTEEECCEEEE----------CSHHHHHHHHHHHHHTTCCCEEEEESS--CCCCTTCE--EE
T ss_pred CHHHHHHHHHHHh-hcCCCeEEEeeeEEc----------CCHHHHHHHHHHHHHhCCCceEEecCc--CCCCCCCe--ee
Confidence 9999999999999 566789999987765 367899999999999999999999998 99999988 56
|
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=436.92 Aligned_cols=337 Identities=36% Similarity=0.644 Sum_probs=275.1
Q ss_pred CCCCCCCCCCCCCCCCCeeEeCCccEEEecCCcCC-CCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc
Q 001045 24 SPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 24 ~l~s~~~~p~~~r~~p~~~~ipg~~~liD~~~~~~-~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
+.+|++.+|.+.+.+|.++.+||..++||+|++.. ++|++|||||+|.||++||+.. .++||||++.|.+++...++.
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~~-~~~pIy~s~~t~~ll~~~l~~ 92 (367)
T 4b87_A 14 IPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKH-FTFPVYCSEITGNLLKNKLHV 92 (367)
T ss_dssp ---------CCCCCCCGGGBCTTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCSTT-CCSCEEECHHHHHHHHHHSCC
T ss_pred ccccccCCCCCCCCCceEEEECCCeEEEeCCCcCCccCCcEEEECcChHHHhCCcccc-cCCcEEECHHHHHHHHHHhcc
Confidence 34566788888999999999999999999998754 7899999999999999999964 478999999999999988877
Q ss_pred CCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeC
Q 001045 103 NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182 (1176)
Q Consensus 103 ~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~Es 182 (1176)
....+++++.++++.+++++|++++++|+||+++|+|+.++ | .+|+||||+++.+.... +.+. ..++|+||+||
T Consensus 93 ~~~~~~~l~~g~~~~ig~~~v~~~~agH~~gs~~~~i~~~~--g--~~il~tGD~~~~~~~~~-~~l~-~~~~D~Li~Es 166 (367)
T 4b87_A 93 QEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPN--G--TVILHTGDFRADPSMER-SLLA-DQKVHMLYLDT 166 (367)
T ss_dssp CGGGEEECCBTSCEEETTEEEEEEECSSSTTCEEEEEECTT--S--CEEEECCSCCCCGGGGG-SGGG-TSCCCEEEECC
T ss_pred ccceEEEeCCCCEEEECCEEEEEEeCCCcCCcEEEEEEcCC--C--cEEEEecCcccCcccch-hhhc-cCCCCEEEEec
Confidence 66678899999999999999999999999999999999754 3 57999999999887543 2221 15899999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEEccchHHHHHHhCCC
Q 001045 183 TYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYG 262 (1176)
Q Consensus 183 Ty~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~vdg~~~~il~~lg~~ 262 (1176)
||+++.+.+|+++++.+.+++.+.+.+.. +++++|++++|++||+|+++.+++++|++|++++++++++++++.+
T Consensus 167 Ty~~~~~~~ps~~~~~~~~~~~i~~~~~~-----~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~ 241 (367)
T 4b87_A 167 TYCSPEYTFPSQQEVIRFAINTAFEAVTL-----NPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIP 241 (367)
T ss_dssp TTCSTTCCCCCHHHHHHHHHHHHHHHHHH-----CTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHh-----CCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCc
Confidence 99999888999999988888877766554 5788889999999999999999999999999999999999998876
Q ss_pred C-CCccccCCCCCeEEEecChH--------HHH--hcCCCceEEEEeccceeecccC---ceeeeccCCeeEEEEeecCC
Q 001045 263 D-SGVFTEDESETDVHVVGWNE--------IMV--ERGYDKVVGFVPTGWTYEVKRN---KFAVRSKDAFEIHLVPYSEH 328 (1176)
Q Consensus 263 ~-~~~~t~d~~~~~I~v~~~~~--------~~~--~~g~~~~v~i~ptGw~~~~~~~---~~~v~~~~~~~v~~i~~SgH 328 (1176)
+ ..++|.++.+++||+++... .+. ..+++++++|.||||.+..+.. .+....+.++.++.+|||+|
T Consensus 242 ~~~~~~t~d~~~~~vh~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~~~~~~~~~~~~~~~~~~vpySeH 321 (367)
T 4b87_A 242 EINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEH 321 (367)
T ss_dssp THHHHEESCGGGCSEEEEEGGGCSHHHHHHHHHSGGGCCCEEEEEEECC----------CCCCCEEETTEEEEEECCCSS
T ss_pred hhhhhcccCCccceEEEeecCcCCHHHHHHHHHHhhcccccEEEEcCcccccCCCCCcccccccccCCceEEEEEeccCC
Confidence 3 35689999899999998762 111 2467889999999998865422 23334456788999999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHHHHHHHHHHHHHHHh
Q 001045 329 SNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEM 376 (1176)
Q Consensus 329 As~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~~~~ 376 (1176)
||+.||.+||+.++|++|||+|+.+.. +...+|.+||+.|..|+
T Consensus 322 ss~~EL~~fv~~l~p~~iiptv~~~~~----~~~~~m~~~~~~w~~~~ 365 (367)
T 4b87_A 322 SSYLEMKRFVQWLKPQKIIPTVNVGTW----KSRSTMEKYFREWKLEA 365 (367)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCSSH----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEECeecCCCH----HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999997653 24579999999999885
|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=398.90 Aligned_cols=315 Identities=30% Similarity=0.548 Sum_probs=247.0
Q ss_pred CeeEeCCccEEEecCCcC-CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEE
Q 001045 40 PSKHVPNTRFLIDAFRYA-ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLI 118 (1176)
Q Consensus 40 ~~~~ipg~~~liD~~~~~-~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i 118 (1176)
+..++||+.|.||.|++. .+++++|||||+|.||+|||+.++ ++||||++.|+.+++..++.....++++++++++.+
T Consensus 3 ~g~~i~g~~i~vD~f~~~~~~~i~ai~lTH~H~DHiggl~~l~-~~pVy~s~~t~~ll~~~l~~~~~~~~~~~~~~~~~i 81 (336)
T 3zdk_A 3 NGVLIPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTW-ARPLYCSPITAHLLHRHLQVSKQWIQALEVGESHVL 81 (336)
T ss_dssp CCEECTTSSEEESCCCHHHHCSSCEEECCCCCGGGSTTCSTTC-CSCEEECHHHHHHHHHHHCCCTTTEEECCTTSEEEE
T ss_pred CCeEeCCCCEeecCCcccCCCCCCEEEECCChHHHHCchHHHc-CCCEEecHHHHHHHHHhhhhcccceEecCCCCeEEe
Confidence 456799999999999864 378999999999999999999987 799999999999999988876666889999998876
Q ss_pred -------CCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCC
Q 001045 119 -------DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLF 191 (1176)
Q Consensus 119 -------~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~ 191 (1176)
++++|++++++|+||+++|+|+.++ ++|+|||||++++.....+.+....++|+||+||||+++.+.+
T Consensus 82 ~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~-----~~i~~tGD~~~~~~~~~~~~l~~~~~vD~Li~DsT~~~~~~~~ 156 (336)
T 3zdk_A 82 PLDEIGQETMTVTLLDANHCPGSVMFLFEGYF-----GTILYTGDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVL 156 (336)
T ss_dssp ESSSSSSCEEEEEEEECSSSTTCEEEEEEETT-----EEEEECCSCCCCGGGGGCGGGSSCCCCSEEEECCTBCCTTCCC
T ss_pred cCcccccCCEEEEEEECCCCcceEEEEEEeCC-----ceEEEeCCCCCCcccccchhhhccCCccEEEEecCCCCCCCCC
Confidence 8899999999999999999999864 6999999999988766555443457999999999999998889
Q ss_pred CChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEEccchHHHHHHhCCCCCCccccCC
Q 001045 192 PLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDE 271 (1176)
Q Consensus 192 p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~vdg~~~~il~~lg~~~~~~~t~d~ 271 (1176)
|+++++.+.+.++++++ .+++ |++++|++||+|+++++|+++|++|+++|+.+..++.+|++ ++|+.++
T Consensus 157 pse~~v~~~l~~~i~~~-------~~g~--vii~~f~vgR~q~i~~~a~~~grkV~v~gr~~~~~~~lg~~--~~~~~~~ 225 (336)
T 3zdk_A 157 PSRQEAAHQIVQLIRKH-------PQHN--IKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLA--DVFTVEE 225 (336)
T ss_dssp CCHHHHHHHHHHHHHTC-------TTSE--EEEEECSSSCHHHHHHHHHHHTCCEECCHHHHHHHHHTTCC--SCEESCG
T ss_pred CCHHHHHHHHHHHHHhC-------CCCc--EEEeecchHHHHHHHHHHHHcCCEEEEEhHHHHHHHhcCCc--cccCCHh
Confidence 99999988888887754 2456 68899999999999999999999999999999999999986 4677777
Q ss_pred CCCeEEEecChH----HHHh-cCCCceEEEEeccceeecccCceeeeccCCeeEEEEeecCCCCHHHHHHHHHHcCCCEE
Q 001045 272 SETDVHVVGWNE----IMVE-RGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRV 346 (1176)
Q Consensus 272 ~~~~I~v~~~~~----~~~~-~g~~~~v~i~ptGw~~~~~~~~~~v~~~~~~~v~~i~~SgHAs~~EL~~~V~~lrPk~V 346 (1176)
....+++..... .+.. .+..+.+.+.||||...... ..++.+||||||+++||+.|++.++|+++
T Consensus 226 ~~~~i~~~~~~~i~~~al~r~~~~~~~i~i~~S~~~ipg~~----------~~~~~vh~S~Ha~~~EL~~~~~~~~P~~~ 295 (336)
T 3zdk_A 226 KAGRIHAVDHMEICHSNMLRWNQTHPTIAILPTSRKIHSSH----------PDIHVIPYSDHSSYSELRAFVAALKPCQV 295 (336)
T ss_dssp GGCSEEEEEGGGCSHHHHHHHHHHSCEEEEEECSSCCCCSS----------TTEEEECCCSSCBHHHHHHHHHHHCCSCE
T ss_pred HcCCCCcchhheeHHHHHHhhhCcCCeEEEEeccccccCCc----------cCceeeEecCCCCHHHHHHHHHHhCCCEE
Confidence 778888876431 1111 13457899999998754321 12578999999999999999999999999
Q ss_pred EEEe-cCCCCcCchHHHHHHHHHHHHHHHH---hhhhHHhhhhccccCccc
Q 001045 347 IPTV-GMDIEKLDSKHANKMRKYFAGLVDE---MASKKEFLMGFHRGTSEI 393 (1176)
Q Consensus 347 IPvH-G~~~e~~~~~E~~~m~k~f~~l~~~---~~~k~~fl~~~~~~~~~~ 393 (1176)
|||| |..- .+|+.++.- ..--..+++-|+.++++.
T Consensus 296 iPvh~ge~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (336)
T 3zdk_A 296 VPIVSRRPC------------GGFQDSLSPRISVPLIPDSVQQYMSSSSRK 334 (336)
T ss_dssp EESCTTSCC------------CSCGGGCCCC--------------------
T ss_pred EEEECCcCc------------hHhHhhcCcccccccCchHHHHHHhccccC
Confidence 9999 8321 235555541 111134566666666653
|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=336.77 Aligned_cols=182 Identities=27% Similarity=0.498 Sum_probs=154.2
Q ss_pred cCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCC
Q 001045 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 952 l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
.+||.|++||||++++ ++. +.+.+|++|+||||+|||+|+ .+|+|++|||||+++|.+||+|..++..+ ..
T Consensus 3 ~~~~~p~~PmLA~~~~-~~~----~~~~~~~~E~K~DG~R~~~~~-~~g~v~l~SR~g~~~t~~fPel~~~~~~l---~~ 73 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGT-VAG----LKASQWAFEGXWDGYRLLVEA-DHGAVRLRSRSGRDVTAEYPQLRALAEDL---AD 73 (310)
T ss_dssp -CCGGGCCCCEEEECC-CTT----CCTTTEEEEEECCSEEEEEEE-ETTEEEEEETTCCBCGGGCGGGHHHHHHT---TT
T ss_pred CCCCCCccCeECCCcC-CCc----cCCCCEEEEEccCcEEEEEEE-ECCEEEEEcCCCCCchhhchhHHHHHHhC---CC
Confidence 4688999999999985 322 246789999999999999999 58999999999999999999999877653 34
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
.++|||||||+||.. | + .+|+.|++|.+.. +++|++||||++||++|+++||.+||++|++++ .
T Consensus 74 ~~~iLDGElv~~d~~-g-~-~~F~~l~~r~~~~------------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~-~ 137 (310)
T 1vs0_A 74 HHVVLDGEAVVLDSS-G-V-PSFSQMQNRGRDT------------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLA-N 137 (310)
T ss_dssp CEEEEEEEEECBCTT-S-C-BCHHHHHTCCTTS------------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHH-H
T ss_pred ccEEEeeEEEEECCC-C-C-cCHHHHHhhccCC------------cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhc-c
Confidence 689999999999873 3 3 5999999997642 389999999999999999999999999999999 3
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+ +++.++++.. .+++++|++++++|+||||+|+++ |+|+||+|+.+|
T Consensus 138 ~--~~i~~~~~~~--------------~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 184 (310)
T 1vs0_A 138 A--TSLTVPELLP--------------GDGAQAFACSRKHGWEGVIAKRRD--SRYQPGRRCASW 184 (310)
T ss_dssp H--SCCCCCCCCC--------------SSHHHHHHHHHHTTCCEEEEEETT--CCCCTTCEEEEE
T ss_pred C--CcEEECccCc--------------hHHHHHHHHHHHcCCceEEEeCCC--CCcCCCCcChHH
Confidence 3 2455544321 248899999999999999999998 999999999888
|
| >4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=317.97 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=174.9
Q ss_pred CCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhc------CCCCChhhHHHHhcccCCCCCcc--cccccchhhHHH
Q 001045 711 QPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLA------LSPDDVLPAVYLCTNKIASNHEN--IELNIGGSLVTS 782 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~------~~p~dl~~~v~l~~~~l~P~~~~--~elgige~~L~k 782 (1176)
.+|||.+||++|++|++|++|++|+++|++||+.+.. .+|+++...+|+++++++|+|++ ++||||+++|+|
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~K 91 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAK 91 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHHH
Confidence 5899999999999999999999999999999999753 45555555667777778999984 599999999999
Q ss_pred HHHHHhCCChHHHH-----------HHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHH
Q 001045 783 AIEEACGTNRSKIR-----------DMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKS 851 (1176)
Q Consensus 783 al~~~~g~~~~~i~-----------~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~ 851 (1176)
+|++++|++.+.++ ..|++.||+|+||+.+.+++.. .+++|||.+||+.|++||..+|++++.+|..
T Consensus 92 ai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~--~~~~LTv~~V~~~L~~IA~~~g~~s~~~k~~ 169 (240)
T 4htp_A 92 LYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCL--QKGSLTIQQVNDLLDSIASNNSAKRKDLIKK 169 (240)
T ss_dssp HHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSC--CSCCCBHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCC--CCCCcCHHHHHHHHHHHHHhhCcccHHHHHH
Confidence 99999999998876 5677889999999999865433 2478999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCCh
Q 001045 852 LIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSL 931 (1176)
Q Consensus 852 il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl 931 (1176)
+|..||.+|++.|+|||+|+|+|+||||+++++|+.+| |++++++|+.++||
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~----------------------------h~~~~~a~~~~~dL 221 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVF----------------------------HNDAAELHNVTTDL 221 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHH----------------------------CTTHHHHHHHHCCH
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHh----------------------------ChhHHHHHHhhCCH
Confidence 99999999999999999999999999999999999874 46789999999999
Q ss_pred HHHHHHHhc
Q 001045 932 DLLIPSLMN 940 (1176)
Q Consensus 932 ~~v~~~L~~ 940 (1176)
+.||+.|.+
T Consensus 222 ~~V~~~l~~ 230 (240)
T 4htp_A 222 EKVCRQLHD 230 (240)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHHhC
Confidence 999999873
|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.81 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=165.7
Q ss_pred ccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC------CchhHHHH
Q 001045 949 TLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS------RFPDLISI 1022 (1176)
Q Consensus 949 ~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~------~ypdl~~~ 1022 (1176)
.|.++||+|++|||+ ++.++++.. ..|++|+||||+|||+|++.+|+|++|||+|++++. .||++++.
T Consensus 2 ~~~~~~~~pv~pmL~----~~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~ 75 (348)
T 1a0i_A 2 NIKTNPFKAVSFVES----AIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL 75 (348)
T ss_dssp TTCCCCEEEEECCHH----HHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH
T ss_pred eeeccCCCcCchhhh----cHHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHH
Confidence 477999999999993 355666543 479999999999999999547899999999999886 79999999
Q ss_pred HHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCC-------------------CCchhhhcccccceEEEEE
Q 001045 1023 INEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG-------------------KDSVITIKSVKVDICVFVF 1083 (1176)
Q Consensus 1023 l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~-------------------~~~~i~~~~~~~~v~~~vF 1083 (1176)
+...+...+.+||||||||+|+ .||+.|++|.+.. ....+.......+++|++|
T Consensus 76 l~~~~~~~~~~~iLDGElv~~~-------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vF 148 (348)
T 1a0i_A 76 LNDDRCFYKDGFMLDGELMVKG-------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLY 148 (348)
T ss_dssp HHSTTCCCTTEEEEEEEEEESS-------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEE
T ss_pred HhhhhccCCCCEEEEEEEEEeC-------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEE
Confidence 9875444567999999999973 4999999996521 1111221234678999999
Q ss_pred EeeeeC----Cccc---ccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceE
Q 001045 1084 DIMFAN----GEQL---LGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGI 1156 (1176)
Q Consensus 1084 DiL~ln----G~~L---l~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGl 1156 (1176)
||||+| |++| +++||.+||++|++++.......+.+++++.+ ++.++++++|+++++.|+|||
T Consensus 149 Dll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGl 218 (348)
T 1a0i_A 149 AILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEV----------YDMVELQQLYEQKRAEGHEGL 218 (348)
T ss_dssp EEEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEE----------SSHHHHHHHHHHHHTTTCCCE
T ss_pred eeEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEeccEec----------CCHHHHHHHHHHHHHcCCceE
Confidence 999999 9999 89999999999999983222357888888775 468999999999999999999
Q ss_pred EEecCCCCCCcccCCCCCCC
Q 001045 1157 IVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1157 mvK~ld~~s~Y~pGkRs~~W 1176 (1176)
|+|+++ |+|+||+|+. |
T Consensus 219 v~K~~d--s~Y~~Grr~~-w 235 (348)
T 1a0i_A 219 IVKDPM--CIYKRGKKSG-W 235 (348)
T ss_dssp EEECTT--CEECSEEEEE-E
T ss_pred EEeCCC--CCCCCCCccC-c
Confidence 999998 9999999886 6
|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=334.24 Aligned_cols=315 Identities=21% Similarity=0.253 Sum_probs=227.4
Q ss_pred CCCCCeeE-eCCccEEEecCCc---------------------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHH
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY---------------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEI 91 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~---------------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~ 91 (1176)
.+.+++.+ ..+..++|||+-. ...++++|||||+|.||+||+++++. ++||||++.
T Consensus 20 iG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l~~~~~~pIy~t~~ 99 (555)
T 3zq4_A 20 IGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKL 99 (555)
T ss_dssp SSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHHHTTCCCCEEECHH
T ss_pred cCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHHHHhcCceEEECHH
Confidence 35567777 7888999999831 12578999999999999999998764 789999999
Q ss_pred HHHHHHHhhc---c-CCCceEEeCCCceEEECCEEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccch
Q 001045 92 TSRLLSQILN---I-NPKFIYPLPIKIPVLIDGCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQ 166 (1176)
Q Consensus 92 T~~ll~~~l~---~-~~~~i~~l~~~~~~~i~~~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~ 166 (1176)
|..++...+. . ....++.+++++++.+++++|++++++| +|||++|+|++++ ++++||||++++......
T Consensus 100 t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~ig~~~v~~~~~~H~~pgs~~~~i~~~~-----~~il~tGD~~~~~~~~~g 174 (555)
T 3zq4_A 100 AIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPP-----GNIVHTGDFKFDFTPVGE 174 (555)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEECCTTCCEEETTEEEEEEEEBCSSSSEEEEEEEETT-----EEEEECCSCBCCSSCSSS
T ss_pred HHHHHHHHHHHcCccCCCceEEeCCCCEEEECCEEEEEEeCCCCCcCcEEEEEEECC-----cEEEEeCCCCCCCCcCcC
Confidence 9999987652 2 2345889999999999999999999999 9999999999975 699999999998765422
Q ss_pred ----hhhhcc--CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHHHHHH
Q 001045 167 ----PVMNEF--AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKILIEI 238 (1176)
Q Consensus 167 ----~~l~~~--~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ll~i 238 (1176)
..+..+ .++|+||+||||+++....+++.+..+.+.+.+++. +++ +++++|+ +||.|+++.+
T Consensus 175 ~~d~~~l~~l~~~~~d~Li~esT~~~~~~~~~se~~v~~~i~~~~~~~--------~gr--vii~~fasnv~R~q~il~~ 244 (555)
T 3zq4_A 175 PANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKV--------DGR--IIFATFASNIHRLQQVIEA 244 (555)
T ss_dssp CCCHHHHHHHHHTCEEEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHC--------CSC--EEEECCTTCHHHHHHHHHH
T ss_pred ccCHHHHHHhcccCCcEEEecCcccCCCCCCCCHHHHHHHHHHHHHhC--------CCE--EEEEEChhHHHHHHHHHHH
Confidence 112211 589999999999998766777776666655555432 567 7899999 9999999999
Q ss_pred HHHcCCcEEEccchHH----HHHHhCCCC-CC--ccccCC-----CCC-eEEEecCh-HH---H--HhcCCCc------e
Q 001045 239 FKKCGRKVCVDSRKME----VLRVLGYGD-SG--VFTEDE-----SET-DVHVVGWN-EI---M--VERGYDK------V 293 (1176)
Q Consensus 239 a~~~g~~I~vdg~~~~----il~~lg~~~-~~--~~t~d~-----~~~-~I~v~~~~-~~---~--~~~g~~~------~ 293 (1176)
|+++|++|+++|+.+. +++.+|+.. +. +++.+. .+. .|.++|.+ +. + ...+..+ .
T Consensus 245 a~~~gr~v~v~grs~~~~~~~~~~~g~l~~p~~~~v~~~~~~~~~~~~~vii~tgsqGe~~~~L~r~a~~~~~~~~~~~~ 324 (555)
T 3zq4_A 245 AVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPG 324 (555)
T ss_dssp HHTTTCEEEEESHHHHHHHHHHHGGGSCCCCGGGEECGGGTTTSCGGGEEEEECCTTCCTTSHHHHHHSSCCSSCCCCTT
T ss_pred HHHHCCEEEEeCHHHHHHHHHHHHcCCccCCcccEeCHHHHhhCCCCCEEEEeCCCCchHHHHHHHHhcCCCCccccCCC
Confidence 9999999999997664 445566541 11 221111 112 24555555 11 1 1122222 1
Q ss_pred EEEEeccceeecccCce-ee---eccCCeeEE-----EEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHHHH
Q 001045 294 VGFVPTGWTYEVKRNKF-AV---RSKDAFEIH-----LVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANK 364 (1176)
Q Consensus 294 v~i~ptGw~~~~~~~~~-~v---~~~~~~~v~-----~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~~~ 364 (1176)
-.++.+||......... .+ ..+.++++. .+|+||||+++||+.|++.++|+++||+|| |+++
T Consensus 325 d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHG---------e~~~ 395 (555)
T 3zq4_A 325 DTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHG---------EYRM 395 (555)
T ss_dssp CEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESB---------CHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCC---------CHHH
Confidence 12345788654422110 00 022334443 489999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHH
Q 001045 365 MRKYFAGLVDE 375 (1176)
Q Consensus 365 m~k~f~~l~~~ 375 (1176)
+.+|.+ +..+
T Consensus 396 ~~~~~~-~a~~ 405 (555)
T 3zq4_A 396 QKMHVK-LATD 405 (555)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 888776 4444
|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=332.90 Aligned_cols=315 Identities=19% Similarity=0.261 Sum_probs=229.8
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------------CC--CCccEEEeccCChhhhCCcccCC----CCceEEe
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------------AA--DFSVSYFLSHFHSDHYTGLSPSW----SKGIIFC 88 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------------~~--~~i~avfITHaH~DHiggL~~l~----~~~pIY~ 88 (1176)
+.+|+.+ .++..++|||+.. .. .++++|||||+|.||+|||+.++ +++||||
T Consensus 201 g~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~~~~~~~pIy~ 280 (651)
T 3af5_A 201 GRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYT 280 (651)
T ss_dssp SCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHHHHHHTTCCCSCEEE
T ss_pred CCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHHHHHhcCCCCceEEE
Confidence 3567877 7889999999832 12 55899999999999999999764 3789999
Q ss_pred CHHHHHHHHHhhc----------cC-C----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCC
Q 001045 89 SEITSRLLSQILN----------IN-P----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNG 146 (1176)
Q Consensus 89 s~~T~~ll~~~l~----------~~-~----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G 146 (1176)
++.|.+++...+. .. . ..++++++++++.+ ++++|++++++|++|+++|.++.++
T Consensus 281 t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~--- 357 (651)
T 3af5_A 281 TPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGN--- 357 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETT---
T ss_pred cHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEEecCCCCcCcEEEEEEECC---
Confidence 9999998875432 00 0 13678999999999 9999999999999999999999864
Q ss_pred ccc--EEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEE
Q 001045 147 GFE--RYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLV 224 (1176)
Q Consensus 147 ~~~--~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli 224 (1176)
+ +++||||+++.+..+..+....+.++|+||+||||+++.+.++++.+..+.+.+.+.+++.. +++ |++
T Consensus 358 --~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~-----~g~--vlI 428 (651)
T 3af5_A 358 --GLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKR-----GGK--VLI 428 (651)
T ss_dssp --TTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHT-----TCE--EEE
T ss_pred --CceEEEEeCCCCCCcccccccccccCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCE--EEE
Confidence 4 89999999998775443221124789999999999998777999999999999999988765 677 799
Q ss_pred eccccchHHHHHHHHHHcCC------cEEEccchHHHHHHhC----CCC-----------CCcc--------c---c-C-
Q 001045 225 ATYVIGKEKILIEIFKKCGR------KVCVDSRKMEVLRVLG----YGD-----------SGVF--------T---E-D- 270 (1176)
Q Consensus 225 ~~~slGR~q~ll~ia~~~g~------~I~vdg~~~~il~~lg----~~~-----------~~~~--------t---~-d- 270 (1176)
|+|++||.|+++.++.++++ ||+++++.++.+..+. +.. ...| . . .
T Consensus 429 p~favgR~qell~~l~~~~~~~~l~~~I~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~ 508 (651)
T 3af5_A 429 PAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQD 508 (651)
T ss_dssp ECCTTTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEECCSHHHHHH
T ss_pred eccCccHHHHHHHHHHHhhhhcCCCCcEEEechHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCceEEcCCHHHHHH
Confidence 99999999999999998875 9999998876553321 110 0111 1 0 0
Q ss_pred --C-CCCeEEEecCh-----H---HHHhcCCCceEEEEeccceeecccC------ceee----------eccCCeeEEEE
Q 001045 271 --E-SETDVHVVGWN-----E---IMVERGYDKVVGFVPTGWTYEVKRN------KFAV----------RSKDAFEIHLV 323 (1176)
Q Consensus 271 --~-~~~~I~v~~~~-----~---~~~~~g~~~~v~i~ptGw~~~~~~~------~~~v----------~~~~~~~v~~i 323 (1176)
. ....|++++.+ . .+.....++...++.+||+.....+ ...+ .....+.++.+
T Consensus 509 ~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i 588 (651)
T 3af5_A 509 IIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTI 588 (651)
T ss_dssp HHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGCEEEEECCSEEEEC
T ss_pred HhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCCceEEEeEEEEEEc
Confidence 0 22345555432 1 1122222222233448888764311 1111 12245677889
Q ss_pred e-ecCCCCHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHHH
Q 001045 324 P-YSEHSNYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGLV 373 (1176)
Q Consensus 324 ~-~SgHAs~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~ 373 (1176)
+ ||||||++||++|++.++ |++|||||| |++++.. |+.++
T Consensus 589 ~g~SgHad~~eL~~~i~~~~~~P~~vi~vHG---------e~~~~~~-la~~~ 631 (651)
T 3af5_A 589 DGFSGHADRRELMNYVAKVRPRPERIITVHG---------EPQKCLD-LATSI 631 (651)
T ss_dssp GGGCSSCCHHHHHHHHHHCBSCCSEEEEESS---------CHHHHHH-HHHHH
T ss_pred CcccCcCCHHHHHHHHHHhhcCCCEEEEEcC---------CHHHHHH-HHHHH
Confidence 9 999999999999999999 999999999 5666554 44444
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=321.35 Aligned_cols=297 Identities=18% Similarity=0.241 Sum_probs=224.0
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHh
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~ 99 (1176)
.+|+.+ .++..++|||+-.. ..++++|||||+|.||+||++.+. .++||||++.|.+++...
T Consensus 14 ~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~~~~~~~Iy~t~~t~~l~~~~ 93 (431)
T 3iek_A 14 GSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIV 93 (431)
T ss_dssp CCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHHTTCCSCEEECHHHHHHHHHH
T ss_pred CcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHHcCCCCeEEEcHHHHHHHHHH
Confidence 368888 78999999998311 147899999999999999999854 468999999999998865
Q ss_pred hc----cCC-------------CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 100 LN----INP-------------KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 100 l~----~~~-------------~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
+. +.. ..++++++++++.+++++|+++++||++||++|+|+.++ ++|+||||+++.+.
T Consensus 94 l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~g~~v~~~~agH~~Gs~~~~i~~~~-----~~ilfsGD~~~~~~ 168 (431)
T 3iek_A 94 LEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEG-----RTLVYSGDLGNREK 168 (431)
T ss_dssp HHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEETTEEEEEEECCSSTTCEEEEEEETT-----EEEEECCCCCCTTS
T ss_pred HHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEeCCEEEEEEeCCCCcCceEEEEEECC-----EEEEEeCCCCCCCC
Confidence 41 111 247889999999999999999999999999999999854 69999999998776
Q ss_pred ccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHc
Q 001045 163 MLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKC 242 (1176)
Q Consensus 163 ~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~ 242 (1176)
...... ..+.++|+||+||||+++. ++++.+..+++.+.+++++.. +|+ |+||+|++||.|+++.+++++
T Consensus 169 ~~l~~~-~~~~~~D~LI~EsTy~~~~--h~~~~~~~~~l~~~i~~~~~~-----gg~--vlIp~fa~gR~qell~~l~~~ 238 (431)
T 3iek_A 169 DVLPDP-SLPPLADLVLAEGTYGDRP--HRPYRETVREFLEILEKTLSQ-----GGK--VLIPTFAVERAQEILYVLYTH 238 (431)
T ss_dssp SSSCCC-CBCCCCSEEEEECTTTTCC--CCCHHHHHHHHHHHHHHHHHT-----TCE--EEEECCTTTHHHHHHHHHHHH
T ss_pred cccCCc-cccCCccEEEEEcccCCcC--CCChHHHHHHHHHHHHHHHHc-----CCe--EEEEeccchHHHHHHHHHHHH
Confidence 543211 1237899999999999964 778999999999999998766 678 789999999999999999998
Q ss_pred C-----CcEEEcc-chHHHHHHhC----C--------------C--CCCc-ccc---------CCCCCeEEEecCh----
Q 001045 243 G-----RKVCVDS-RKMEVLRVLG----Y--------------G--DSGV-FTE---------DESETDVHVVGWN---- 282 (1176)
Q Consensus 243 g-----~~I~vdg-~~~~il~~lg----~--------------~--~~~~-~t~---------d~~~~~I~v~~~~---- 282 (1176)
+ .||++++ +..++++.+. + | .+.+ +.. +.....|++++.+
T Consensus 239 ~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~ 318 (431)
T 3iek_A 239 GHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAG 318 (431)
T ss_dssp GGGSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCCTTEEECCSHHHHHHHHHSCSSEEEEESCTTSSS
T ss_pred HHhccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCC
Confidence 7 8999995 5545444331 0 1 0000 000 0123456666554
Q ss_pred ----HHHHhcCCCceEEEEeccceeecccCc--------eee---eccCCeeEEEE-eecCCCCHHHHHHHHHHcCCCEE
Q 001045 283 ----EIMVERGYDKVVGFVPTGWTYEVKRNK--------FAV---RSKDAFEIHLV-PYSEHSNYDELREYVKFLKPKRV 346 (1176)
Q Consensus 283 ----~~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~v---~~~~~~~v~~i-~~SgHAs~~EL~~~V~~lrPk~V 346 (1176)
..+....+++...++.+||+.+.+.++ +.+ ....+++|+.+ .||+|||++||.+|++.++ +|
T Consensus 319 G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~--~v 396 (431)
T 3iek_A 319 GRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP--RV 396 (431)
T ss_dssp SHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS--EE
T ss_pred ChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC--eE
Confidence 223333444444556699998765332 111 24566788999 5999999999999999875 99
Q ss_pred EEEec
Q 001045 347 IPTVG 351 (1176)
Q Consensus 347 IPvHG 351 (1176)
+.|||
T Consensus 397 ~lvHg 401 (431)
T 3iek_A 397 VLVHG 401 (431)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99999
|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=323.43 Aligned_cols=311 Identities=19% Similarity=0.231 Sum_probs=217.8
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC----
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW---- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~---- 81 (1176)
+..||++... +.+|+.+ ..+..++|||+-. ...+|++|||||+|.||+|||+.+.
T Consensus 14 i~~LG~~~~v-----g~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~ 88 (459)
T 2i7t_A 14 IRPLGAGQEV-----GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88 (459)
T ss_dssp EEEEESSSSS-----SSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS
T ss_pred EEEEecCCCC-----CCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcC
Confidence 3345655443 4678888 7889999999832 1147899999999999999999753
Q ss_pred CCceEEeCHHHHHHHHHhhc----c----------C-------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEE
Q 001045 82 SKGIIFCSEITSRLLSQILN----I----------N-------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFK 140 (1176)
Q Consensus 82 ~~~pIY~s~~T~~ll~~~l~----~----------~-------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie 140 (1176)
.+++|||++.|..++...+. + . ...+..+++++++.+++++|+++++||++|+++|+++
T Consensus 89 ~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~GH~~Gs~~~~i~ 168 (459)
T 2i7t_A 89 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIE 168 (459)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEEEEE
T ss_pred CCCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEECCEEEEEEeCCCccCcEEEEEE
Confidence 36899999999988765431 0 0 1246789999999999999999999999999999999
Q ss_pred EcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeE
Q 001045 141 VPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRV 220 (1176)
Q Consensus 141 ~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~v 220 (1176)
.++ ++|+||||+...+............++|+||+||||+++ .++++.+..+.+.+.+.+++.. +|+
T Consensus 169 ~~~-----~~il~sGD~~~~~~~~~~~~~~~~~~~D~Li~Esty~~~--~~~~~~~~~~~l~~~i~~~~~~-----~g~- 235 (459)
T 2i7t_A 169 IAG-----VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH--IHEKREEREARFCNTVHDIVNR-----GGR- 235 (459)
T ss_dssp ETT-----EEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTC--CCCCHHHHHHHHHHHHHHHHHT-----TCE-
T ss_pred ECC-----cEEEEeCCCCCCCCcccCCCCcCCCCCeEEEECCCCCCC--CCCChHHHHHHHHHHHHHHHHC-----CCE-
Confidence 854 699999999987764332211112589999999999985 3678888888999999988765 677
Q ss_pred EEEEeccccchHHHHHHHHHHc--------CCcEEEccch-H---HHHHHhC-CCCCC----------c-------c-cc
Q 001045 221 LFLVATYVIGKEKILIEIFKKC--------GRKVCVDSRK-M---EVLRVLG-YGDSG----------V-------F-TE 269 (1176)
Q Consensus 221 lvli~~~slGR~q~ll~ia~~~--------g~~I~vdg~~-~---~il~~lg-~~~~~----------~-------~-t~ 269 (1176)
|+||+|++||.|+++.++.++ +.||++++.. . ++++.+. +.... + + +.
T Consensus 236 -vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 314 (459)
T 2i7t_A 236 -GLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSM 314 (459)
T ss_dssp -EEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCT
T ss_pred -EEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhcccCCcCCCcceeeCCH
Confidence 799999999999999888765 6899998633 2 2333221 10000 0 0 00
Q ss_pred ---CCCCCeEEEecCh--------HHHHhcCCCceEEEEeccceeecccCc------eee------eccCCeeEEEEeec
Q 001045 270 ---DESETDVHVVGWN--------EIMVERGYDKVVGFVPTGWTYEVKRNK------FAV------RSKDAFEIHLVPYS 326 (1176)
Q Consensus 270 ---d~~~~~I~v~~~~--------~~~~~~g~~~~v~i~ptGw~~~~~~~~------~~v------~~~~~~~v~~i~~S 326 (1176)
+.....|++++.+ ..+..+..++...++.+||+.+.+.++ ..+ ....+++++.++||
T Consensus 315 ~~~~~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S 394 (459)
T 2i7t_A 315 DHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFS 394 (459)
T ss_dssp TSSCCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCS
T ss_pred HHhcCCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeec
Confidence 1123456666554 122333334334455699987654221 011 12346788899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 001045 327 EHSNYDELREYVKFLKPKRVIPTVG 351 (1176)
Q Consensus 327 gHAs~~EL~~~V~~lrPk~VIPvHG 351 (1176)
+|||++||.+||+.++|++|++|||
T Consensus 395 ~Had~~~l~~~i~~~~p~~v~~vHG 419 (459)
T 2i7t_A 395 AHTDYQQTSEFIRALKPPHVILVHG 419 (459)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESS
T ss_pred ccCCHHHHHHHHHhcCCCeEEEeCC
Confidence 9999999999999999999999999
|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-31 Score=327.74 Aligned_cols=313 Identities=20% Similarity=0.259 Sum_probs=227.9
Q ss_pred CCCCeeE-eCCccEEEecCCc------------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY------------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSR 94 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~------------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ 94 (1176)
+.+|+.+ .++..++|||+.. ...++++|||||+|.||+|||+.++ .++||||++.|.+
T Consensus 192 g~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~~~~~~Iy~t~~t~~ 271 (636)
T 2ycb_A 192 GRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHYGYDGPVYCTAPTRD 271 (636)
T ss_dssp SCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHTTCCSCEEECHHHHH
T ss_pred CCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHhcCCCCeEEEcchHHH
Confidence 4567777 6888999999732 1256899999999999999999864 4789999999999
Q ss_pred HHHHhhc----------cCC-----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCccc--E
Q 001045 95 LLSQILN----------INP-----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFE--R 150 (1176)
Q Consensus 95 ll~~~l~----------~~~-----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~--~ 150 (1176)
++...+. ... ..+.++++++++.+ ++++|+++++||++|+++|+|+.++ + +
T Consensus 272 l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~-----~~~~ 346 (636)
T 2ycb_A 272 LMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGD-----GQHN 346 (636)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECCSSTTCEEEEEEETT-----TTTC
T ss_pred HHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEeCCCCCCCcEEEEEEECC-----CeEE
Confidence 8875432 000 13678999999999 9999999999999999999999864 4 8
Q ss_pred EEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccc
Q 001045 151 YVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIG 230 (1176)
Q Consensus 151 IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slG 230 (1176)
|+||||+++....+.......+.++|+||+||||+++.+.++++++..+.+.+.+++++.. +++ +++|+|++|
T Consensus 347 ilftGD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~-----~g~--vlIp~fa~G 419 (636)
T 2ycb_A 347 MVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRR-----GGK--ILIPVFAVG 419 (636)
T ss_dssp EEECCSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHH-----TCC--EEEECCTTT
T ss_pred EEEECCCCCCcccccCCcccCCCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHc-----CCE--EEEEECCCc
Confidence 9999999988765443221124789999999999987666899999999999999988665 677 789999999
Q ss_pred hHHHHHHHHHHcC-------CcEEEccchHHHHHHh----CCCC-----------CCcc-----c--c--------CCCC
Q 001045 231 KEKILIEIFKKCG-------RKVCVDSRKMEVLRVL----GYGD-----------SGVF-----T--E--------DESE 273 (1176)
Q Consensus 231 R~q~ll~ia~~~g-------~~I~vdg~~~~il~~l----g~~~-----------~~~~-----t--~--------d~~~ 273 (1176)
|.|+++.++.+++ .||+++++.++.+..+ ++.. ...| . . ....
T Consensus 420 R~qell~~l~~~~~~~~~~~~~V~~dg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~ 499 (636)
T 2ycb_A 420 RAQELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDERREIVEGE 499 (636)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEEEEHHHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEehHHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceEEeCCHHHHHHhccCC
Confidence 9999999998776 4999999877644332 1110 0111 0 0 0012
Q ss_pred CeEEEecC-h----H---HHHh--cCCCceEEEEeccceeeccc------Cceee----------eccCCeeEEEEe-ec
Q 001045 274 TDVHVVGW-N----E---IMVE--RGYDKVVGFVPTGWTYEVKR------NKFAV----------RSKDAFEIHLVP-YS 326 (1176)
Q Consensus 274 ~~I~v~~~-~----~---~~~~--~g~~~~v~i~ptGw~~~~~~------~~~~v----------~~~~~~~v~~i~-~S 326 (1176)
..|++++. + . .+.. ..+...| +.+||+..... +...+ .....+.++.++ ||
T Consensus 500 ~~vIiat~gm~~gg~~~~~l~~~~~~~~~~v--i~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~S 577 (636)
T 2ycb_A 500 PSIILSTSGMLTGGNSLEYFKWLCEDPDNSL--VFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFS 577 (636)
T ss_dssp SCEEEESCSSSSSHHHHHHHHHHTTCTTSEE--EECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEEEECCSCC
T ss_pred CEEEEecCCccCCChHHHHHHHHhCCCCCEE--EEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEEEEECCcc
Confidence 33444432 2 1 1122 2233344 34888876441 11111 122456778899 99
Q ss_pred CCCCHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHHH
Q 001045 327 EHSNYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGLV 373 (1176)
Q Consensus 327 gHAs~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~ 373 (1176)
||||++||++|++.++ |++|||||| |++++.. |+.++
T Consensus 578 gHad~~eL~~~i~~~~~~Pk~vi~vHG---------e~~~~~~-~a~~~ 616 (636)
T 2ycb_A 578 GHSDRRQLMEYVKRISPKPEKILLCHG---------DNYKTLD-LASSI 616 (636)
T ss_dssp SSCCHHHHHHHHHSCSSCCSEEEEESS---------CHHHHHH-HHHHH
T ss_pred eeCCHHHHHHHHHHhccCCCEEEEECC---------CHHHHHH-HHHHH
Confidence 9999999999999999 999999999 6666655 44444
|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-31 Score=327.67 Aligned_cols=314 Identities=20% Similarity=0.288 Sum_probs=221.1
Q ss_pred CCCeeE-eCCccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 38 FPPSKH-VPNTRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
.+|+.+ .++..++|||+.. ...++++|||||+|.||+|||+.+. .+++|||++.|..++
T Consensus 197 ~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~~~~~~Iy~t~~t~~ll 276 (640)
T 2xr1_A 197 RSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLM 276 (640)
T ss_dssp CCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHTTCCSCEEECHHHHHHH
T ss_pred CcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHhcCCCCeEEECHHHHHHH
Confidence 567777 6888999999732 2245899999999999999999764 478999999999987
Q ss_pred HHhhc----------cC-C----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCccc--EEE
Q 001045 97 SQILN----------IN-P----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFE--RYV 152 (1176)
Q Consensus 97 ~~~l~----------~~-~----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~--~Il 152 (1176)
...+. .. . ..+..+++++++.+ ++++|+++++||++||++|+++.++ + +++
T Consensus 277 ~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~~~~GH~~Gs~~~~i~~~~-----~~~~il 351 (640)
T 2xr1_A 277 VLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGD-----GLHNVV 351 (640)
T ss_dssp HHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETT-----TTEEEE
T ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEEEcCCCCcCcEEEEEEECC-----ceEEEE
Confidence 65432 01 0 13678899999999 9999999999999999999999864 5 899
Q ss_pred EECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchH
Q 001045 153 HTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232 (1176)
Q Consensus 153 YTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~ 232 (1176)
||||+++....+..+....+.++|+||+||||+++.+.++++.+..+.+.+.++..+.. +++ +++|+|++||.
T Consensus 352 ftGD~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~-----~g~--vlIp~favGR~ 424 (640)
T 2xr1_A 352 FTGDYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIER-----GGI--AVIPAFAVGRS 424 (640)
T ss_dssp ECCSCCSSCCSSCCCCCCBCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC-------------C--EEEECCTTTHH
T ss_pred EECCCCCCCccccccccccCCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhc-----CCe--EEEEecccchH
Confidence 99999987765443221124689999999999997777899999999999998887544 567 78999999999
Q ss_pred HHHHHHHHHcC-------CcEEEccchHHHHHHh----CCCC-----------CCcc--------c---c-C---C-CCC
Q 001045 233 KILIEIFKKCG-------RKVCVDSRKMEVLRVL----GYGD-----------SGVF--------T---E-D---E-SET 274 (1176)
Q Consensus 233 q~ll~ia~~~g-------~~I~vdg~~~~il~~l----g~~~-----------~~~~--------t---~-d---~-~~~ 274 (1176)
|+++.++++++ .||+++++.++.+..+ ++.. .+.| . . . . ...
T Consensus 425 qell~~l~~~~~~~~~~~~~V~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 504 (640)
T 2xr1_A 425 QEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQP 504 (640)
T ss_dssp HHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHHHHC----CC
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEhHHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCceEEeCCHHHHHHHhcCCCC
Confidence 99999998877 4999999887644322 1110 0001 1 0 0 1 123
Q ss_pred eEEEecCh-----H---HHHhcCCCceEEEEeccceeecccCc------eee----------eccCCeeEEEEe-ecCCC
Q 001045 275 DVHVVGWN-----E---IMVERGYDKVVGFVPTGWTYEVKRNK------FAV----------RSKDAFEIHLVP-YSEHS 329 (1176)
Q Consensus 275 ~I~v~~~~-----~---~~~~~g~~~~v~i~ptGw~~~~~~~~------~~v----------~~~~~~~v~~i~-~SgHA 329 (1176)
.|++++.+ . .+.....++...++.+||+.....++ ..+ .....+.++.++ |||||
T Consensus 505 ~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~SgHa 584 (640)
T 2xr1_A 505 CVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHS 584 (640)
T ss_dssp CEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-----------CCCCCSEEEECCCCSCSC
T ss_pred eEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccCCCceEEeeeEEEEEEccccccC
Confidence 35554332 1 12222222222334588887654111 111 122456788899 99999
Q ss_pred CHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHH
Q 001045 330 NYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGL 372 (1176)
Q Consensus 330 s~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l 372 (1176)
|++||++|++.++ |++|||||| |++++..+.+.+
T Consensus 585 d~~eL~~~i~~~~~~P~~vi~vHG---------e~~~~~~~a~~~ 620 (640)
T 2xr1_A 585 DRRQLMEYVKRMQPRPERVFTEHG---------DEKACVDLASSV 620 (640)
T ss_dssp CHHHHHHHHHTCBSCCSEEEEESS---------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCEEEEECC---------CHHHHHHHHHHH
Confidence 9999999999999 999999999 666655544433
|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=313.18 Aligned_cols=314 Identities=19% Similarity=0.207 Sum_probs=217.7
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------------CCCCccEEEeccCChhhhCCcccCCC-------CceEE
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------------AADFSVSYFLSHFHSDHYTGLSPSWS-------KGIIF 87 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------------~~~~i~avfITHaH~DHiggL~~l~~-------~~pIY 87 (1176)
+.+++.+ ..+..++|||+-. ...++++|||||+|.||+|||++++. ++|||
T Consensus 29 g~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L~~~~~~~~~~~pIy 108 (562)
T 3bk2_A 29 GKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIY 108 (562)
T ss_dssp SCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEE
T ss_pred CCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHHHHhhccccCCceEE
Confidence 4567777 6888999999821 12468999999999999999998642 78999
Q ss_pred eCHHHHHHHHHhhc---cC--CCceEEeCCCceEEECC-EEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 88 CSEITSRLLSQILN---IN--PKFIYPLPIKIPVLIDG-CEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 88 ~s~~T~~ll~~~l~---~~--~~~i~~l~~~~~~~i~~-~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
|++.|.+++...+. +. ...++++++++++.+++ ++|++++++| +|||++|+|+.++ ++++||||+.+.
T Consensus 109 ~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~~i~~~~-----~~il~tGD~~~~ 183 (562)
T 3bk2_A 109 GARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPI-----GTIVHTGDFKLD 183 (562)
T ss_dssp EEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETT-----EEEEECCSCCCC
T ss_pred eCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEEEEEECC-----eEEEEcCCCCCC
Confidence 99999999887653 22 23578899999999999 9999999999 8999999999865 699999999987
Q ss_pred ccccch-----hhhhcc--CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cch
Q 001045 161 KTMLLQ-----PVMNEF--AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGK 231 (1176)
Q Consensus 161 ~~~~~~-----~~l~~~--~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR 231 (1176)
...... ..+..+ .++|+||+||||+......+++....+.+.+.+++. +++ +++++|+ ++|
T Consensus 184 ~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~~~e~~v~~~l~~~~~~~--------~gr--vii~~fas~~~r 253 (562)
T 3bk2_A 184 PTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRA--------PGR--VFVTTFASHIHR 253 (562)
T ss_dssp SSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHC--------SSC--EEEECCTTCHHH
T ss_pred CCCCCCCcccHHHHHHhhccCCCEEEecccCCCCCCCCChHHHHHHHHHHHHHhC--------CCE--EEEEEccccchH
Confidence 654321 112222 489999999999975545566555545555554432 467 6789999 999
Q ss_pred HHHHHHHHHHcCCcEEEccchHH----HHHHhCCCC-CC-ccccC-----CCCC-eEEEecCh-H------HHHhc----
Q 001045 232 EKILIEIFKKCGRKVCVDSRKME----VLRVLGYGD-SG-VFTED-----ESET-DVHVVGWN-E------IMVER---- 288 (1176)
Q Consensus 232 ~q~ll~ia~~~g~~I~vdg~~~~----il~~lg~~~-~~-~~t~d-----~~~~-~I~v~~~~-~------~~~~~---- 288 (1176)
.|++++++++++++|++.++.+. +++.+++.. .. ++..+ +... .|.+++.+ + -+...
T Consensus 254 ~q~il~~a~~~~r~V~v~g~s~~~~~~~~~~~g~l~~~~~~i~~~~~~~~~~~~~vi~~tg~~ge~~~~l~ria~~~h~~ 333 (562)
T 3bk2_A 254 IQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFEGHAK 333 (562)
T ss_dssp HHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGGEEEEECCTTSCSHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhCCEEEEEChHHHHHHHHHHhcCcccCCCCccCHHHHhcCCCCCEEEEEcCCCchhHHHHHhhhhccccc
Confidence 99999999999999999877653 445566542 11 11111 1112 23334433 1 11110
Q ss_pred -CCCceEEEEeccceeecccCcee-e---eccCCeeE-----EEEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCc
Q 001045 289 -GYDKVVGFVPTGWTYEVKRNKFA-V---RSKDAFEI-----HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLD 358 (1176)
Q Consensus 289 -g~~~~v~i~ptGw~~~~~~~~~~-v---~~~~~~~v-----~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~ 358 (1176)
...+...++.+||......+... + ....++++ ..+|+||||+++||+.|++.++|++||||||
T Consensus 334 ~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHG------- 406 (562)
T 3bk2_A 334 MAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG------- 406 (562)
T ss_dssp CCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESB-------
T ss_pred ccCCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcC-------
Confidence 01112233457776654321110 0 11223333 2479999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001045 359 SKHANKMRKYFAGLVDE 375 (1176)
Q Consensus 359 ~~E~~~m~k~f~~l~~~ 375 (1176)
|+++|.++. .+..+
T Consensus 407 --e~~~~~~~~-~~~~~ 420 (562)
T 3bk2_A 407 --EVRHQMNFK-WLAES 420 (562)
T ss_dssp --CHHHHHHHH-HHHHT
T ss_pred --CHHHHHHHH-HHHHH
Confidence 777776654 44443
|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=299.18 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=201.4
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCcC-----------------------------------------CCC
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRYA-----------------------------------------ADF 60 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~~-----------------------------------------~~~ 60 (1176)
..||+++.++ .+++.+ ..+..++||||-.. ..+
T Consensus 10 ~~lG~~~~~g-----~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~ 84 (429)
T 2az4_A 10 TFHSGILTIG-----GTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQ 84 (429)
T ss_dssp EEEECTTSSS-----CCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCS
T ss_pred EEeeCCCccC-----CeEEEEEECCeEEEEecCCCCCcccCCCcchhhhccCCcccCCchhhhcccccccchhhhhcccc
Confidence 3456555443 356777 68889999997321 146
Q ss_pred ccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc-------------CCCceEEeCCCceEEECCEEEEEEe
Q 001045 61 SVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI-------------NPKFIYPLPIKIPVLIDGCEVVLVG 127 (1176)
Q Consensus 61 i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~-------------~~~~i~~l~~~~~~~i~~~~Vt~~~ 127 (1176)
+++|||||+|.||++|++.++.++|||+++.|..++...... ....++.++.++++.+++++|++++
T Consensus 85 i~~v~lTH~H~DHiggl~~l~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~ 164 (429)
T 2az4_A 85 HTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVP 164 (429)
T ss_dssp EEEEECSCSCHHHHTTGGGBCTTSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEEEEE
T ss_pred CCEEEECCchHHHhCcHhHhcCCCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEEECCEEEEEEE
Confidence 799999999999999999988889999999999998865431 1234678899999999999999999
Q ss_pred cCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccc--hhhhhccCCCcEEEEeCCCCCCC--------CCCCChHH
Q 001045 128 ANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLL--QPVMNEFAGCDAVFLDTTYCNPK--------FLFPLQEE 196 (1176)
Q Consensus 128 a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~--~~~l~~~~~vDvLI~EsTy~~~~--------~~~p~~~e 196 (1176)
++| +||+++|+|+.++ ++++||||+++.+.... ........++|+||+||||+... ..+++.++
T Consensus 165 ~~H~~~gs~~~~i~~~~-----~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~~~~~~~~s~~~ 239 (429)
T 2az4_A 165 VDHDAYGASALLIRTPD-----HFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEED 239 (429)
T ss_dssp CCCSSTTCEEEEEEETT-----EEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCCTTBCCCCSHHH
T ss_pred CCCCChhhEEEEEEeCC-----cEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCcccccccccCCCCCCHHH
Confidence 999 9999999999864 69999999988665321 11222226999999999998721 11555555
Q ss_pred HHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHHHHHHHHHcCCcEEEccchHHHHHHh-CCC----C-CC---
Q 001045 197 SVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKILIEIFKKCGRKVCVDSRKMEVLRVL-GYG----D-SG--- 265 (1176)
Q Consensus 197 ~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ll~ia~~~g~~I~vdg~~~~il~~l-g~~----~-~~--- 265 (1176)
..+.+.+++++. .+++ +++++++ ++|.|++ +++.|+||+++|+.+..+..+ ... . ..
T Consensus 240 ~~~~i~~~~~~~--------~~rl-il~h~~~~~~~r~~~~---a~~~gr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (429)
T 2az4_A 240 LVQHLVRLELEN--------PNRQ-ITFNGYPANVERFAKI---IEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKI 307 (429)
T ss_dssp HHHHHHHHHHTC--------SSSC-EEEEECTTCHHHHHHH---HHHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCC
T ss_pred HHHHHHHHHHhC--------CCcE-EEEEeccchHHHHHHH---HHHhCCEEEEEChhHHHHHhhccccCeeEecccccc
Confidence 555555444322 3442 3334343 5666665 789999999999988554443 211 0 00
Q ss_pred -------ccccC----CCCCeEEEecChHHHHhcCCCceEEEEeccceeecccC-cee--e--eccCCeeEEEEeecCCC
Q 001045 266 -------VFTED----ESETDVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRN-KFA--V--RSKDAFEIHLVPYSEHS 329 (1176)
Q Consensus 266 -------~~t~d----~~~~~I~v~~~~~~~~~~g~~~~v~i~ptGw~~~~~~~-~~~--v--~~~~~~~v~~i~~SgHA 329 (1176)
+++.+ .....|.+. .+. +..-.....+. .++|....... ... + ....+++++.+|+||||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ii~~-~~~-~~~l~~~~~vi--~s~~~~~g~~~~~~~~~~~~~~~~~~~v~~i~~SgHa 383 (429)
T 2az4_A 308 PELNPALEIPYDTLLKDKTDYLWQV-VNQ-FDNLQEGSLYI--HSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHA 383 (429)
T ss_dssp TTSCGGGBCCHHHHHHCSSSEEEEC-CSC-GGGSCTTCEEE--EESCSSCSTTSHHHHHHHHHHHHTTCEEEECCCCSSC
T ss_pred cccCccceecHHHHhhCCCcEEEEe-cCc-HHhhCCCCEEE--EeCCCCCcccchHHHHHHHHHHhCCCEEEEEeecCCC
Confidence 11100 011123322 111 00111122333 35554332211 000 0 13456778889999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEecC
Q 001045 330 NYDELREYVKFLKPKRVIPTVGM 352 (1176)
Q Consensus 330 s~~EL~~~V~~lrPk~VIPvHG~ 352 (1176)
+++||++|++.++|++||||||.
T Consensus 384 ~~~eL~~~~~~~~Pk~~ipvHGe 406 (429)
T 2az4_A 384 IPEDLDKIIALIEPQVLVPIHTL 406 (429)
T ss_dssp CHHHHHHHHHHHCCSEEEEESCS
T ss_pred CHHHHHHHHHhhCCCEEEECCCC
Confidence 99999999999999999999993
|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=285.25 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=142.9
Q ss_pred CccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEE
Q 001045 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFIL 1036 (1176)
Q Consensus 957 Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~IL 1036 (1176)
+++||||++++...+ ...+|++|+||||+|||+ +| ++|||+|+++|. |+|.+.+... . ++||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~----~g--~l~SR~g~~~t~--p~l~~~~~~~----~-~~iL 63 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK----QT--QMLSRTFKPIRN--SVMNRLLTEL----L-PEGS 63 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE----SS--SEECTTSCBCSC--HHHHHHHHHH----S-CTTE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe----cC--EEECCCCcccCc--HHHHHHHHhc----C-CeeE
Confidence 689999999886532 156899999999999998 34 999999999996 8988887774 2 8999
Q ss_pred EEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC-
Q 001045 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG- 1115 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~- 1115 (1176)
|||+|++. .+|+.|++|.+..... ...+++|++|||||+| ++.||.+||++|++++......
T Consensus 64 DGElv~~~-------~~F~~l~~~~~~~~~~------~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~ 126 (297)
T 1fvi_A 64 DGEISIEG-------ATFQDTTSAVMTGHKM------YNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHIL 126 (297)
T ss_dssp EEEEECTT-------SCHHHHHHHHHSCC----------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGG
T ss_pred EEEEEECC-------CCHHHHHHHhccCCCC------CccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCcc
Confidence 99999931 4799999997754321 3568999999999998 7899999999999999322222
Q ss_pred ---cEEEeE--EEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCC----CC
Q 001045 1116 ---YFQYAK--EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSD----SW 1176 (1176)
Q Consensus 1116 ---~i~~~~--~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~----~W 1176 (1176)
.+.+++ ++.+ .+.++++++|+++++.|+||||+|+++ |+|+|| |+. +|
T Consensus 127 ~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G-Rs~~~~g~w 183 (297)
T 1fvi_A 127 EHAQVKIIPLIPVEI----------NNITELLQYERDVLSKGFEGVMIRKPD--GKYKFG-RSTLKEGIL 183 (297)
T ss_dssp GCSSEEEEECCCEEE----------CSHHHHHHHHHHHHHTTCCSEEEECTT--CCCCSS-BCCTTTTSS
T ss_pred ccceEEEcCcceEec----------CCHHHHHHHHHHHHHCCCcEEEEECCC--CCcCCC-CCCCCCCCe
Confidence 788888 7765 468999999999999999999999988 999999 988 78
|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-29 Score=251.40 Aligned_cols=132 Identities=28% Similarity=0.438 Sum_probs=102.4
Q ss_pred EEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHH------HHHhhcCCCCCCeEEEEEEEEEecCCCCcccCh
Q 001045 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLIS------IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSF 1054 (1176)
Q Consensus 981 f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~------~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pF 1054 (1176)
|++|+||||+|||+|+ .+|+|++|||||+++|.+||++.. .+..++.....+||||||||+||+.++ +|
T Consensus 1 f~~E~K~DG~R~q~~~-~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~----~f 75 (139)
T 3vnn_A 1 FYIETKLDGERMQMHK-DGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQ----TF 75 (139)
T ss_dssp CCCCCCCCCEEEEEEE-ETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTT----EE
T ss_pred CEEEEEECeEEEEEEE-ECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCC----CH
Confidence 6899999999999999 589999999999999999999764 355555556789999999999997643 45
Q ss_pred HHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEE
Q 001045 1055 QELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKE 1122 (1176)
Q Consensus 1055 q~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~ 1122 (1176)
..++++..... .......++||++|||||+||++|+++||.+||++|++++ .+.+++++++++
T Consensus 76 ~~~~~~~~~~~----~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~-~~~~~~~~~~~~ 138 (139)
T 3vnn_A 76 MQKGTKFDIKR----MVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIF-TPIPGRIEIVQK 138 (139)
T ss_dssp CCC-----------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHC-CCBTTBSCBCCC
T ss_pred HHHHhhhhhhh----hhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHh-hcCCCeEEEEec
Confidence 44444422110 1123357899999999999999999999999999999999 666778877654
|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=250.34 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=163.9
Q ss_pred CCCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCC--------CCceEEeCHH
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSW--------SKGIIFCSEI 91 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~--------~~~pIY~s~~ 91 (1176)
...+|+.+ ..+..+||||+-.. .+.|++|||||+|.||+|||+++. .++||||++.
T Consensus 13 v~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~ 92 (717)
T 2i7x_A 13 GTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLP 92 (717)
T ss_dssp SSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHH
T ss_pred CCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEecch
Confidence 46788888 78899999998332 136899999999999999999865 2689999999
Q ss_pred HHHHHHHhhc-------cCC----------------CceEEeCCCceEEE----CCEEEEEEecCCCcCceEEEEEEcCC
Q 001045 92 TSRLLSQILN-------INP----------------KFIYPLPIKIPVLI----DGCEVVLVGANHCPGAVQFLFKVPGR 144 (1176)
Q Consensus 92 T~~ll~~~l~-------~~~----------------~~i~~l~~~~~~~i----~~~~Vt~~~a~H~pGS~~flie~~~~ 144 (1176)
|..++...+. ... ..++++.+++++.+ ++++|+++++||++|+++|.|+.++
T Consensus 93 t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~~~~- 171 (717)
T 2i7x_A 93 VINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYS- 171 (717)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECSS-
T ss_pred hHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEEeCC-
Confidence 9987765431 110 13678999999999 8999999999999999999999854
Q ss_pred CCcccEEEEECCCCCcccccchhh---------hhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcccc
Q 001045 145 NGGFERYVHTGDFRFCKTMLLQPV---------MNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEG 215 (1176)
Q Consensus 145 ~G~~~~IlYTGDfr~~~~~~~~~~---------l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~ 215 (1176)
++|+||||++........+. +..+.++|+||+||||+.+. +++. +....+.+.+.+++..
T Consensus 172 ----~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~--h~~~-~~~~~l~~~i~~~l~~---- 240 (717)
T 2i7x_A 172 ----EKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSS--QPFK-KRSKIFKDTLKKGLSS---- 240 (717)
T ss_dssp ----CEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCS--SCHH-HHHHHHHHHHHHHTST----
T ss_pred ----CEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCC--CCCH-HHHHHHHHHHHHHHhC----
Confidence 59999999998765443221 12346899999999999853 5554 4566888888887655
Q ss_pred CCCeEEEEEeccccchHHHHHHHHHHcC-----------CcEEEccchH-HHHHH
Q 001045 216 LQKRVLFLVATYVIGKEKILIEIFKKCG-----------RKVCVDSRKM-EVLRV 258 (1176)
Q Consensus 216 ~~g~vlvli~~~slGR~q~ll~ia~~~g-----------~~I~vdg~~~-~il~~ 258 (1176)
+|+ |+||+|+.||.|+++.++.+++ +||+++++.+ ++++.
T Consensus 241 -~G~--VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i 292 (717)
T 2i7x_A 241 -DGS--VIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTY 292 (717)
T ss_dssp -TCE--EEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHH
T ss_pred -CCe--EEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHH
Confidence 678 7899999999999999886653 7999998876 54443
|
| >1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-23 Score=232.96 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=113.5
Q ss_pred ccCceEEEEEecceeEEEEEEe---eCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKL---VDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~---~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
+...+|++|+||||+|+|+|++ ++|.+.+|||+++++|..||++.. ....++|||||||++.. ++
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-------~~~~~~vLDGElv~~~~-~~---- 139 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-------VLFQGSIFDGELCVDIV-EK---- 139 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-------TGGGCEEEEEEEEEETT-TT----
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-------ccCCCeeEEEEEEEEcC-CC----
Confidence 4456899999999999999994 247899999999999999998732 13468999999999531 00
Q ss_pred ChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc---CCC--cEEEeEEEEEcC
Q 001045 1053 SFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE---KMG--YFQYAKEMTVEG 1127 (1176)
Q Consensus 1053 pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~---~~~--~i~~~~~~~v~~ 1127 (1176)
.++|++||||++||++|+++||.+||++|++++... ... .+.+.+...
T Consensus 140 ------------------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~~~~~~~--- 192 (330)
T 1ckm_A 140 ------------------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIP--- 192 (330)
T ss_dssp ------------------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEE---
T ss_pred ------------------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEEEEEEEe---
Confidence 178999999999999999999999999999999311 111 233333222
Q ss_pred CCCCCccccCHHHHHHHH---HHHHhC--CCceEEEecCCCCCCcccCCCCCCC
Q 001045 1128 DDNCLTSDVSLSKINNFL---EEALHS--SCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1128 ~~~~~~~~~~~eei~~~~---~~ai~~--g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
. +++++| ..++.+ |.||||+|+.+ |+|.||+ +.+|
T Consensus 193 ----------~-~~~~~~~~~~~~~~~~yg~EGlI~K~~d--spY~~Gr-~~~~ 232 (330)
T 1ckm_A 193 ----------L-EHPTIIKDHLKKANAIYHTDGLIIMSVD--EPVIYGR-NFNL 232 (330)
T ss_dssp ----------T-TCHHHHHHHHHHHHHHSCEEEEEEEESS--SCCCCEE-EEEE
T ss_pred ----------h-hHHHHHHHHHHHHhccCCCceEEEeeCC--CcccCCC-ccCe
Confidence 2 344555 467778 99999999998 9999994 4544
|
| >1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-22 Score=236.60 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred HhccCceEEEEEecceeEEEEEEe----eCCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecC
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKL----VDGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRK 1046 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~----~~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~ 1046 (1176)
+.+...+|++|+||||+|+|+|+. .++.+.+|||++++++ ..||++.+..+.. .....++|||||||+++..
T Consensus 55 ~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~-~~~~~~~vLDGElV~~~~~ 133 (395)
T 1p16_A 55 ETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK-PTYHHGTLLDGELVLENRN 133 (395)
T ss_dssp THHHHSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS-CCCCSSEEEEEEEEEECCS
T ss_pred HhhCcCCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccch-hccCCcceeeeEEEEeccC
Confidence 445557899999999999999993 2467999999999965 5899987654210 1235689999999997531
Q ss_pred CCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC-------------
Q 001045 1047 NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK------------- 1113 (1176)
Q Consensus 1047 ~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~------------- 1113 (1176)
. .+.+++|++||||++||++|+++||.+||++|++++..+.
T Consensus 134 ~--------------------------~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~ 187 (395)
T 1p16_A 134 V--------------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNS 187 (395)
T ss_dssp S--------------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSC
T ss_pred C--------------------------CcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCcccccc
Confidence 0 1246899999999999999999999999999999652210
Q ss_pred ---CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHH--HHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1114 ---MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE--ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1114 ---~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~--ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+-.+...... ....++++|+. ++..|.||||+|..+ |+|.||++ ..|
T Consensus 188 ~~~pf~v~~~~~~-------------~~~~~~~~~~~~~~~~~g~EGlI~K~~d--s~Y~~Gr~-~~w 239 (395)
T 1p16_A 188 PEFPFKVGFKTML-------------TSYHADDVLSKMDKLFHASDGLIYTCAE--TPYVFGTD-QTL 239 (395)
T ss_dssp TTSCCEEEECCCE-------------EGGGTHHHHTTGGGCSSCEEEEEEEESS--SCCCSEEE-EEE
T ss_pred ccCceEEEEecch-------------hHHHHHHHHHHHHhcCCCCCeEEEEeCC--CCcCCCCc-cce
Confidence 0012222222 23345667765 346899999999998 99999955 455
|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=196.17 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=152.2
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC----------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW---------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~---------- 81 (1176)
+..||+|+++|...+..+++.+ .++..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 27 i~~LG~g~~~p~~~~~~~~~li~~~~~~iLiD~G~~~~~~l~~~~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~ 106 (268)
T 1zkp_A 27 MTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATK 106 (268)
T ss_dssp EEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTHHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcCCCCCCccEEEEEECCcEEEEECCHHHHHHHHHhCCcccCCEEEEecCCchhhCCHHHHHHHHHhccccc
Confidence 4458899999999999999988 6888999999831 2357999999999999999997532
Q ss_pred ---CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 82 ---SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
...+||+++.+.+.+....-.....+..+..++.+.+++++|+++++.|.+|+++|+|+.++ ++++||||+.
T Consensus 107 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~~H~~~~~~~~i~~~~-----~~i~~~GD~~ 181 (268)
T 1zkp_A 107 GQLPELPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGN-----DIVVYSADSS 181 (268)
T ss_dssp CCCCCEEEEECSSSHHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECCSSSCCEEEEEEETT-----EEEEECCSCC
T ss_pred CCCCceEEEeCccHHHHHHhcccCCccceEEecCCCeEEECCEEEEEEECCCCCCceEEEEEECC-----eEEEEeCCCC
Confidence 25799999999988875421112246678889999999999999999999999999999754 6999999998
Q ss_pred CcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc-cchHHHHHH
Q 001045 159 FCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV-IGKEKILIE 237 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s-lGR~q~ll~ 237 (1176)
+.+.. .....++|+||+|+||.......+..+...+++.+.+++. +.+.+++++... ..+.+.+.+
T Consensus 182 ~~~~~-----~~~~~~~d~li~e~~~~~~~~~~~~~H~~~~~a~~~~~~~--------~~~~lil~H~~~~~~~~~~~~~ 248 (268)
T 1zkp_A 182 YIPEF-----IPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDA--------NVKELLLTHLPHTGNPADLVTE 248 (268)
T ss_dssp CCTTH-----HHHHTTCSEEEEECCBCTTSCCGGGTCCBHHHHHHHHHHT--------TCSEEEEESBCSSSCTHHHHHH
T ss_pred CCHHH-----HHHHcCCCEEEEECCCCccccccCCCCCCHHHHHHHHHHc--------CCCEEEEECCCCCCChHHHHHH
Confidence 76542 1112689999999999864322222233444555555543 334444444333 556666666
Q ss_pred HHHHcCCcEEE
Q 001045 238 IFKKCGRKVCV 248 (1176)
Q Consensus 238 ia~~~g~~I~v 248 (1176)
+.+.++.+|.+
T Consensus 249 ~~~~~~~~v~~ 259 (268)
T 1zkp_A 249 AKQIFSGHITL 259 (268)
T ss_dssp HHTTCCSEEEE
T ss_pred HHHhCCCCEEE
Confidence 66667777766
|
| >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=212.03 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=120.4
Q ss_pred HhccCceEEEEEecceeEEEEEEee-----CCeEEEEcCCCccCC---CCchhHHHHH-HhhcCCCCCCeEEEEEEEEEe
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKLV-----DGTVRIFSRNGDETT---SRFPDLISII-NEFCKPAAGTFILDAEVVAID 1044 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~~-----~g~V~ifSR~g~d~T---~~ypdl~~~l-~~~~~~~~~~~ILDGElVa~d 1044 (1176)
..+...+|++|+|+||+|+|+.+.. .|.|.++||+++.++ .+||.+.+.= ..++.....++|||||||++.
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~~~~~TlLDGElV~d~ 139 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQT 139 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTCCCCSEEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhccCCCeEEEEEEEecc
Confidence 5577889999999999999999852 378999999999996 6899876520 000112457899999999964
Q ss_pred cCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC-----------
Q 001045 1045 RKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK----------- 1113 (1176)
Q Consensus 1045 ~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~----------- 1113 (1176)
. + + +...+++|++||||++||++|+++||.+|+++|+++|..+.
T Consensus 140 ~--~-----~------------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~ 194 (461)
T 3kyh_C 140 N--P-----M------------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRC 194 (461)
T ss_dssp C--T-----T------------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTC
T ss_pred C--C-----C------------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhcccccc
Confidence 2 1 0 01246999999999999999999999999999999873211
Q ss_pred ---CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHH--HHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1114 ---MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE--ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1114 ---~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~--ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+-.+.+.. .....+++.+|+. ++..|.||||+|..+ ++|.+|.|+.+|
T Consensus 195 ~~~pF~V~~K~-------------~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~--spY~~Ggr~~~~ 247 (461)
T 3kyh_C 195 TTFPFKISMKH-------------MDFSYQLVKVAKSLDKLPHLSDGLIFTPVK--APYTAGGKDSLL 247 (461)
T ss_dssp SCCCSEEEECC-------------CEEGGGHHHHHHHHTTCSSCEEEEEEEESS--SBCCSSSEEEEE
T ss_pred ccCCcEEEecc-------------chhhhhHHHHHHhhhhccCCCCeEEEEeCC--CCCcCCCcCCCe
Confidence 10122111 1122456667763 478999999999987 999997787766
|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=195.70 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=126.8
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-e----CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC-----
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-V----PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW----- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-i----pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~----- 81 (1176)
+..||+|+++|.+.|..+++.+ . .+..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 4 i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~~~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~ 83 (306)
T 2cbn_A 4 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 83 (306)
T ss_dssp EEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHHHHHHHHhCCCHHHcCEEEEecCCchhhCChHHHHHHHHh
Confidence 4568999999999999999999 5 678899999832 2357899999999999999998542
Q ss_pred ----CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcC--------
Q 001045 82 ----SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPG-------- 143 (1176)
Q Consensus 82 ----~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~-------- 143 (1176)
.+.+||+++.+.+.+...+... ...++.+..++.+.+++++|+++++.|.+++++|.|+.+.
T Consensus 84 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~ 163 (306)
T 2cbn_A 84 SGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQ 163 (306)
T ss_dssp TTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSCCEEEEEEECCCCCCBCHH
T ss_pred cCCCCCeEEEcCccHHHHHHHHHHhhccCCCceEEEEEcCCCcEeecCCEEEEEEEccCCCCccEEEEEecCccCccCHH
Confidence 2578999999999988765321 1235678888899999999999999999999999998521
Q ss_pred ---------------------------------------CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 144 ---------------------------------------RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 144 ---------------------------------------~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
.+| ++|+|+||+++.+.. ...+.++|+||+||||
T Consensus 164 ~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g--~~i~~sgDt~~~~~~-----~~~~~~~D~li~E~t~ 236 (306)
T 2cbn_A 164 ALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPG--KALAIFGDTGPCDAA-----LDLAKGVDVMVHEATL 236 (306)
T ss_dssp HHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCC--CEEEECCSCBSCSTH-----HHHHTTCSEEEEECCB
T ss_pred HHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCC--CEEEEeCCCCCHHHH-----HHHhcCCCEEEEECcC
Confidence 124 689999999987642 1223689999999999
Q ss_pred CCC
Q 001045 185 CNP 187 (1176)
Q Consensus 185 ~~~ 187 (1176)
.+.
T Consensus 237 ~~~ 239 (306)
T 2cbn_A 237 DIT 239 (306)
T ss_dssp CGG
T ss_pred Chh
Confidence 864
|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=197.04 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=126.4
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-e---CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-V---PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW------ 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-i---pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~------ 81 (1176)
+..||||+++|...+..+++.+ . .+..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 3 i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~ 82 (320)
T 1y44_A 3 LLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQ 82 (320)
T ss_dssp EEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHHHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCCCEEEEEEecCCCcEEEEECCHHHHHHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhc
Confidence 4468999999999999999999 5 778999999831 1247899999999999999998642
Q ss_pred ---CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcC---------
Q 001045 82 ---SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPG--------- 143 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~--------- 143 (1176)
.+.+||+++.+.+++...+... ...++.+..++.+.+++++|++++++|.+++++|+|+...
T Consensus 83 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~p~~H~~~~~gy~i~~~~~~~~~~~~~ 162 (320)
T 1y44_A 83 GGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADV 162 (320)
T ss_dssp TCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSSBEEEEEEECCBCCCC----
T ss_pred CCCCCEEEEeCHHHHHHHHHHHHhhccCCCCceEEEEcCCCceEecCCEEEEEEEccCCCCcceEEEecCCCcCccCHHH
Confidence 2578999999999888664321 1235678888899999999999999999999999998521
Q ss_pred --------------------------------------CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCC
Q 001045 144 --------------------------------------RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYC 185 (1176)
Q Consensus 144 --------------------------------------~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~ 185 (1176)
.+| ++|+|+||+++.+.. ...+.++|+||+||||.
T Consensus 163 ~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g--~~i~~sgDt~~~~~~-----~~~~~~~D~li~E~t~~ 235 (320)
T 1y44_A 163 LKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKG--RSVVFSGDTRVSDKL-----KELARDCDVMVHEATFA 235 (320)
T ss_dssp ----------------------------------CCCCBCC--CEEEECCSCBCCHHH-----HHHTTTCSEEEEECCBC
T ss_pred HHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCC--CEEEEeCCCCCHHHH-----HHHhCCCCEEEEeccCC
Confidence 023 689999999987631 22236899999999998
Q ss_pred CC
Q 001045 186 NP 187 (1176)
Q Consensus 186 ~~ 187 (1176)
+.
T Consensus 236 ~~ 237 (320)
T 1y44_A 236 KE 237 (320)
T ss_dssp TT
T ss_pred cc
Confidence 74
|
| >3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-19 Score=204.17 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=106.6
Q ss_pred cCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
...+|++|+||||+|+|+++.++|+|.+|||+++++| .+||++.+. . ....++|||||||+++. +|
T Consensus 61 ~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~--~---~~~~~tvLDGElV~~~~-~g----- 129 (343)
T 3rtx_A 61 EQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL--R---MHLSNTLLDGEMIIDKV-NG----- 129 (343)
T ss_dssp HHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE--E---EECCSEEEEEEEEEEES-SS-----
T ss_pred ccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh--h---ccCCCeEEEEEEEEecC-CC-----
Confidence 3468999999999999999954789999999999985 589988653 1 13578999999999863 22
Q ss_pred hHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc--------------CCCcEEE
Q 001045 1054 FQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE--------------KMGYFQY 1119 (1176)
Q Consensus 1054 Fq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~--------------~~~~i~~ 1119 (1176)
...+.|++||+|++||++++++||.+||++|++.+..+ .|-.+.+
T Consensus 130 ---------------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~ 188 (343)
T 3rtx_A 130 ---------------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRP 188 (343)
T ss_dssp ---------------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEE
T ss_pred ---------------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEE
Confidence 01369999999999999999999999999999854221 1223444
Q ss_pred eEEEEEcCCCCCCccccCHHHHH-HHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1120 AKEMTVEGDDNCLTSDVSLSKIN-NFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1120 ~~~~~v~~~~~~~~~~~~~eei~-~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+.... ...+.+. .-|..++..+.||||+|..+ +|.+| |+.+|
T Consensus 189 K~~~~~----------~~~~~ll~~~~~~~l~~~~dGlIf~~~~---~Y~~G-~~~~~ 232 (343)
T 3rtx_A 189 KQFFDI----------NISRKLLEGNFAKEVSHEMDGLIFQPIG---KYKPG-RCDDI 232 (343)
T ss_dssp CCCEEG----------GGHHHHSCC----------CEEEEEESS---CCCCE-EEEEE
T ss_pred EEeEeh----------hhHHHHHhhhhHhhcCCCCCeEEEEECc---cCcCC-CCcce
Confidence 444432 1222222 12467889999999999874 89987 65444
|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=180.13 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=119.3
Q ss_pred CCCCCCCeeE-eCCccEEEecCCc------CCCCccEEEeccCChhhhCCcccCCC----CceEEeCHHHHHHHHHhhcc
Q 001045 34 IPRTFPPSKH-VPNTRFLIDAFRY------AADFSVSYFLSHFHSDHYTGLSPSWS----KGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~~liD~~~~------~~~~i~avfITHaH~DHiggL~~l~~----~~pIY~s~~T~~ll~~~l~~ 102 (1176)
..|..+++.+ ..+..++||++.. ...++++|||||.|.||++|++.+.. +.+||+++.+..+ ...+..
T Consensus 35 ~~r~~s~~li~~~~~~iLiD~G~~~~~~~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~-~~~~~~ 113 (258)
T 3g1p_A 35 YRRQPCSGVVKFNDAITLIDAGLHDLADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGC-DDLFKH 113 (258)
T ss_dssp GCBCBSEEEEEETTEEEEECCCCTTHHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCS-TTTTTS
T ss_pred ccccCceEEEEECCcEEEEECCchHHHhhcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhH-HHHhcC
Confidence 4567777777 6899999999821 23679999999999999999987643 4789999988721 111211
Q ss_pred CC--CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEE
Q 001045 103 NP--KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFL 180 (1176)
Q Consensus 103 ~~--~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~ 180 (1176)
.. .....+..++.+.+++++|+++++.|.+++++|+|+.++ ++++||||+.+.+...... +.. .++|+||+
T Consensus 114 ~~~~~~~~~~~~g~~~~~g~~~v~~~~~~H~~~~~g~~i~~~~-----~~i~~~GDt~~~~~~~~~~-l~~-~~~Dlli~ 186 (258)
T 3g1p_A 114 PGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAH-----SRVAWLSDTAGLPEKTLKF-LRN-NQPQVMVM 186 (258)
T ss_dssp CTTEEEEEECCTTCCEEETTEEEEEEECCSSSCCEEEEEECSS-----CEEEEECSCSSCCHHHHHH-HHH-TCCSEEEE
T ss_pred CCccccccccCCCCeEEECCEEEEEEECCCCCCceEEEEEeCC-----cEEEEECCCCCCCHHHHHH-HHh-CCCCEEEE
Confidence 11 113578899999999999999999999999999999743 6999999998765422111 111 58999999
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 181 DTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 181 EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
|+||....+. ...+...+++.+.++++
T Consensus 187 e~t~~~~~~~-~~~H~~~~~a~~~~~~~ 213 (258)
T 3g1p_A 187 DCSHPPRADA-PRNHCDLNTVLALNQVI 213 (258)
T ss_dssp ECCBSSCSSC-CSSSCBHHHHHHHHHHH
T ss_pred eCCCCCcccc-CCCCCCHHHHHHHHHHc
Confidence 9999864321 12234444556666655
|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=186.70 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=120.3
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC---------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW--------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~--------- 81 (1176)
+-.||+|+++|.+.+..+++.+ ..+..++|||+.. ...++++|||||.|.||++||+.+.
T Consensus 3 l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~ 82 (368)
T 3zwf_A 3 VTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGS 82 (368)
T ss_dssp EEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTHHHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC--
T ss_pred EEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhHHHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhcccc
Confidence 3468999999999999999999 7889999999832 1147999999999999999998643
Q ss_pred ----CCceEEeCHHHHHHHHHhhccCC------CceEEeCC---------------------------Cc----------
Q 001045 82 ----SKGIIFCSEITSRLLSQILNINP------KFIYPLPI---------------------------KI---------- 114 (1176)
Q Consensus 82 ----~~~pIY~s~~T~~ll~~~l~~~~------~~i~~l~~---------------------------~~---------- 114 (1176)
.+.+||+++.+.+.+...+.+.. -.++.+.. |.
T Consensus 83 ~~~~~~l~iygp~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 162 (368)
T 3zwf_A 83 MVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENS 162 (368)
T ss_dssp ----CCEEEEEETTHHHHHHHHHHHTTCCCSSCEEEEEECCCGGGSCC-------------------CCCEECCBTTTTB
T ss_pred ccCCCCeEEEEcHHHHHHHHHHHHhhCcCCCceEEEEEeecCccccccccccccccccccccCcccccccccccccccCc
Confidence 26799999999999887653211 12333432 22
Q ss_pred --eEEECCEEEEEEecCCCcCceEEEEEEcCCC-----------------------------------------------
Q 001045 115 --PVLIDGCEVVLVGANHCPGAVQFLFKVPGRN----------------------------------------------- 145 (1176)
Q Consensus 115 --~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~----------------------------------------------- 145 (1176)
.++.++++|+++++.|...+++|+|+.+...
T Consensus 163 ~~~~~~~~~~V~a~~~~H~vp~~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~G~~v~~~dG~~i~~~~v~~~~~~ 242 (368)
T 3zwf_A 163 YLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLKKPIV 242 (368)
T ss_dssp EEEEECSSEEEEEEEEESSSCEEEEEEEECC------------------------------------------------C
T ss_pred eeEEeCCCEEEEEEeccCCCceEEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCCCCeEEecCCEEEEhHHhcccccc
Confidence 2334789999999999888999999875211
Q ss_pred CcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCC
Q 001045 146 GGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNP 187 (1176)
Q Consensus 146 G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~ 187 (1176)
| ++|+|+||+++.. .......+.++|+||+|+||.+.
T Consensus 243 g--~~v~~~GDT~~~~---~~~~~~~~~~~Dlli~Eat~~~~ 279 (368)
T 3zwf_A 243 G--RKICILGDCSGVV---GDGGVKLCFEADLLIHEATLDDA 279 (368)
T ss_dssp C--CEEEEECSCSEEC---SSHHHHHTTTCSEEEEECCSCGG
T ss_pred c--eEEEEEecCCccc---chhHHHHhcCCCEEEEecCCChH
Confidence 3 6899999987611 11122233789999999999874
|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=174.65 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=124.3
Q ss_pred eCCccEEEecCCc-------CCCCccEEEeccCChhhhCCcccCC------C-----CceEEeCHHHHHHHHHhhc----
Q 001045 44 VPNTRFLIDAFRY-------AADFSVSYFLSHFHSDHYTGLSPSW------S-----KGIIFCSEITSRLLSQILN---- 101 (1176)
Q Consensus 44 ipg~~~liD~~~~-------~~~~i~avfITHaH~DHiggL~~l~------~-----~~pIY~s~~T~~ll~~~l~---- 101 (1176)
+.+..++||++.. ...++++|||||+|.||++|++.+. . +.+||+++.+. .+...+.
T Consensus 17 i~~~~iLiD~G~~~~~~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~ 95 (280)
T 2e7y_A 17 YSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKR 95 (280)
T ss_dssp EGGGTEEEEECTTHHHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHH
T ss_pred ECCcEEEEECCcchHHHhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhh
Confidence 4678899999832 2367999999999999999998751 1 47999999998 7665431
Q ss_pred ----cC-CCceEEeCCCceEEEC-----CEEEEEEecCCCcC--ceEEEEEEc-----------------------C---
Q 001045 102 ----IN-PKFIYPLPIKIPVLID-----GCEVVLVGANHCPG--AVQFLFKVP-----------------------G--- 143 (1176)
Q Consensus 102 ----~~-~~~i~~l~~~~~~~i~-----~~~Vt~~~a~H~pG--S~~flie~~-----------------------~--- 143 (1176)
.. ...++.+..|+++.++ +++|++++++|.+| +++|+|+.. +
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~ 175 (280)
T 2e7y_A 96 ANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDF 175 (280)
T ss_dssp HCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGG
T ss_pred cccCCCCceEEEEcCCCCEEEeCCcccCCEEEEEEEccCCCCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCce
Confidence 11 1246788899999998 89999999999999 999999741 0
Q ss_pred ----CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCe
Q 001045 144 ----RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKR 219 (1176)
Q Consensus 144 ----~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~ 219 (1176)
.+| ++|+|+||+++. ... .+.++|+||+||||.++.......+...+++.+.++++ +.+
T Consensus 176 ~~~~~~g--~~i~ysgDt~~~---~~~----~~~~~d~li~e~t~~~~~~~~~~~H~t~~~a~~~~~~~--------~~~ 238 (280)
T 2e7y_A 176 VTEEYHK--KVLTISGDSLAL---DPE----EIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAA--------GVK 238 (280)
T ss_dssp GEEEEEE--EEEEECCSCSSC---CHH----HHTTCSCEEEECCBC--------CCCBHHHHHHHHHHH--------TCC
T ss_pred ecCCccC--CEEEEECCCChH---HHH----hhcCCCEEEEeCCcCChhhHHhcCCCCHHHHHHHHHHc--------CCC
Confidence 013 589999999877 111 12689999999999875321122344445566666655 223
Q ss_pred EEEEEecccc--c-hHHHHHHHHHH-c-CCcEEE
Q 001045 220 VLFLVATYVI--G-KEKILIEIFKK-C-GRKVCV 248 (1176)
Q Consensus 220 vlvli~~~sl--G-R~q~ll~ia~~-~-g~~I~v 248 (1176)
. +++.+|+- . ..+.+++.+++ + +.+|.+
T Consensus 239 ~-lvl~H~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (280)
T 2e7y_A 239 K-VILYHISTRYIRQLKSVIKKYREEMPDVEILY 271 (280)
T ss_dssp E-EEEESCCGGGHHHHHHHHHHHHHHCTTSEEEE
T ss_pred E-EEEEeecCcCcchHHHHHHHHHHhCCCceEEE
Confidence 3 34445553 2 23445544443 3 346665
|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=169.78 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=117.4
Q ss_pred CCCCCCeeEe---CC---ccEEEecCCc--------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHH
Q 001045 35 PRTFPPSKHV---PN---TRFLIDAFRY--------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITS 93 (1176)
Q Consensus 35 ~r~~p~~~~i---pg---~~~liD~~~~--------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~ 93 (1176)
.|..+++.+. ++ ..++||++.. ...+|++|||||.|.||++||+.+. .+.+||+++.+.
T Consensus 60 ~R~~~s~li~~~~~~g~~~~iLID~G~~~~~~l~~~~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~ 139 (293)
T 3md7_A 60 RRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTR 139 (293)
T ss_dssp CBCBCEEEEEEECTTCCEEEEEECCCTTHHHHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHH
T ss_pred cccccEEEEEecCCCCceeEEEEECCccHHHHHHhcCCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHH
Confidence 4455777774 34 6999999822 2367999999999999999999653 378999999999
Q ss_pred HHHHHhhccC----------C-CceEEeCCCceEEECC----EEEEEEecCCC-cCceEEEEEEcCCCCcccEEEEECCC
Q 001045 94 RLLSQILNIN----------P-KFIYPLPIKIPVLIDG----CEVVLVGANHC-PGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 94 ~ll~~~l~~~----------~-~~i~~l~~~~~~~i~~----~~Vt~~~a~H~-pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
+.+...++.. . ..++.++.++++.+++ ++|+++++.|. .++++|+|+ +++|+||+
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~---------~~~y~gDt 210 (293)
T 3md7_A 140 NRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG---------SVVYCTDV 210 (293)
T ss_dssp HHHHHHCGGGTSCCTTCCCCCCEEEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET---------TEEEECSC
T ss_pred HHHHHhhhhhhccccccCCCCceEEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe---------EEEEECCC
Confidence 9998765311 1 1367788899999999 99999999997 699999985 49999999
Q ss_pred CCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 158 r~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
...+... +..+.++|+||+|+|+..+...+.+. +++.+.++++
T Consensus 211 ~~~~~~~----~~~~~~~Dlli~e~~~~~~~~~H~~~----~~a~~~~~~~ 253 (293)
T 3md7_A 211 SAFPEQS----LQYIKDADVLIIGALQYRPHPSHFSL----GEALEWIEKL 253 (293)
T ss_dssp SBCCGGG----HHHHTTCSEEEEECCCSSCBTTBCCH----HHHHHHHHHH
T ss_pred CCCCHHH----HHHhcCCCEEEEeCccCCCCCCCCCH----HHHHHHHHHc
Confidence 7543221 22236899999999987654444444 3455555555
|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=170.16 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCCCCCCeeE-eCCcc-EEEecCC--------c---------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHH
Q 001045 34 IPRTFPPSKH-VPNTR-FLIDAFR--------Y---------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEIT 92 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~-~liD~~~--------~---------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T 92 (1176)
..|..+++.+ ..+.. +|||++. . ...++++|||||.|.||++||+.+. .+++||+++.+
T Consensus 37 ~~R~~ss~li~~~~~~~iLiD~G~~~~~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~~~~~~vy~~~~~ 116 (321)
T 3jxp_A 37 TARTQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMV 116 (321)
T ss_dssp CCBCBCEEEEESSSSSEEEECCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECHHH
T ss_pred CcccceEEEEEeCCceEEEEeCCchHHHHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHhcCCCeEEECHHH
Confidence 4567777777 56676 9999982 1 2357999999999999999999875 36899999999
Q ss_pred HHHHHHhh---cc-C----CCceEEeCCCceEEE---CCEEEEEEecC--------CC-----cCceEEEEEEcCCCCcc
Q 001045 93 SRLLSQIL---NI-N----PKFIYPLPIKIPVLI---DGCEVVLVGAN--------HC-----PGAVQFLFKVPGRNGGF 148 (1176)
Q Consensus 93 ~~ll~~~l---~~-~----~~~i~~l~~~~~~~i---~~~~Vt~~~a~--------H~-----pGS~~flie~~~~~G~~ 148 (1176)
.+.+...+ ++ . ...++.++.++++.+ ++++|+++++. |. ..+++|+|+.+. +|
T Consensus 117 ~~~l~~~~~~f~~~~~~~~~i~~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~-~g-- 193 (321)
T 3jxp_A 117 HQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTR-TG-- 193 (321)
T ss_dssp HHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETT-TC--
T ss_pred HHHHHhhCccccccccccCceeEEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecC-CC--
Confidence 99887533 11 1 123678888999999 99999999998 74 479999998311 13
Q ss_pred cEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCC
Q 001045 149 ERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCN 186 (1176)
Q Consensus 149 ~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~ 186 (1176)
++++|+||++..+.. .+..+.++|+||+||||..
T Consensus 194 ~~i~y~~Dt~~~~~~----~~~~~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 194 GKLFYAPGLGQVDEK----LLAMMHGADCLLVDGTLWE 227 (321)
T ss_dssp CEEEEESSCCCCCHH----HHHHHHHCSEEEEECCCSS
T ss_pred cEEEEECCCCCCCHH----HHHHhcCCCEEEEeCCCCC
Confidence 799999999854332 1222368999999999865
|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=146.71 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=124.1
Q ss_pred CCCCeeE-eCCccEEEecCCcC-----CCCccEEEeccCChhhhCCccc---C-CCCceEEeCHHHHHHHHHhhccCCCc
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA-----ADFSVSYFLSHFHSDHYTGLSP---S-WSKGIIFCSEITSRLLSQILNINPKF 106 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~-----~~~i~avfITHaH~DHiggL~~---l-~~~~pIY~s~~T~~ll~~~l~~~~~~ 106 (1176)
..+|+.+ ..+..++||++... ..++++|||||.|.||+ ++.. + ..+.+||+++.+...+. .
T Consensus 36 g~s~~li~~~~~~iliDpg~~~~~~~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~~v~~~~~~~~~l~--------~ 106 (235)
T 3kl7_A 36 KHGSLMLTYDNHSIQVDPVSEYADYTTFPKADIILITHEHGDHL-DPKAIQAVEKSDTEIIANENSQKKLG--------K 106 (235)
T ss_dssp ETTEEEEEETTEEEEESCCTTTCCTTSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTCEEEECHHHHHHHT--------C
T ss_pred cceEEEEEECCEEEEECCCCCccchhhCCCCCEEEECCCccccC-CHHHHHHhhcCCCEEEEcHHHHHHhc--------C
Confidence 3467777 68889999998432 25799999999999999 4442 2 34789999999988764 2
Q ss_pred eEEeCCCc-eEEECCEEEEEEecCCCcC----------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCC
Q 001045 107 IYPLPIKI-PVLIDGCEVVLVGANHCPG----------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGC 175 (1176)
Q Consensus 107 i~~l~~~~-~~~i~~~~Vt~~~a~H~pG----------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~v 175 (1176)
...+..|+ ++.+++++|+++++.|.++ +++|+|+.++ ++++|+||+.+.+. +..+.++
T Consensus 107 ~~~l~~g~~~~~~g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g-----~~i~~~GDt~~~~~------~~~l~~~ 175 (235)
T 3kl7_A 107 GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDG-----LRVYIAGDTEDIPE------MKDLKDI 175 (235)
T ss_dssp SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETT-----EEEEECCSCCSCGG------GGGCCSC
T ss_pred cEEecCCCEEEEECCEEEEEEEeecCCCccccccCCCCceEEEEEeCC-----eEEEEECCCCchhh------HHhhcCC
Confidence 56788899 9999999999999999542 5899999853 79999999988764 2334689
Q ss_pred cEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEE
Q 001045 176 DAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCV 248 (1176)
Q Consensus 176 DvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~v 248 (1176)
|++++++... .+.+.++ +++.++.. +.+.+|.+ +|.-...+.+.+.+++.|.++.+
T Consensus 176 Dv~il~~~~~----~h~~~~e----a~~~~~~l--------~~k~vip~-H~~~~~~~~~~~~l~~~gi~v~~ 231 (235)
T 3kl7_A 176 DIAFLPVNQP----YTMTVSQ----AAKAARMF--------SPKILYPY-HYGDTKIGELKDALKDSGIDVRI 231 (235)
T ss_dssp SEEEEECCTT----TSCCHHH----HHHHHHHH--------CCSEEEEE-SCTTCCTTHHHHHTTTSCCEECC
T ss_pred CEEEECCCCC----cccCHHH----HHHHHHHc--------CCCEEEEE-cCCCCCHHHHHHHHhhCCCEEEE
Confidence 9999998631 2344443 44444444 33444444 44334445666666666766654
|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-13 Score=152.84 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=104.7
Q ss_pred CceEEEEEecceeEEEEEEeeCCeEEEEcCCCcc--CCC-Cchh-HHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE--TTS-RFPD-LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d--~T~-~ypd-l~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
...|+||+|+||.|+++|+ .+|.++++||++.. +|. .+|+ +...+.. .+.+++||||+++++ .+
T Consensus 94 ~~~~vvEeKlDG~~v~l~y-~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~----~~~~l~L~GEvv~~~-------~~ 161 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVM-YKGKMLGITRGGFICPFTTERIPDFVPQEFFK----DNPNLILVGEMAGPE-------SP 161 (389)
T ss_dssp SCEEEEEEECCSEEEEEEE-ETTEEEEEETTSCBCHHHHHHGGGTSCTHHHH----HCTTEEEEEEEESSS-------CS
T ss_pred CCeEEEEEeecCcEEEEEE-ECCEEEEEeCCCCCCCCchhhhhHhHHHHHhc----CCCcEEEEEEEEecC-------Ch
Confidence 4689999999999999999 58889999999998 544 4566 3323332 156899999998864 24
Q ss_pred hHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCc
Q 001045 1054 FQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133 (1176)
Q Consensus 1054 Fq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~ 1133 (1176)
|+.+.. .....++.|++|||++.++... .|+.+|+++|+++- -+..+.+ ....
T Consensus 162 f~~~n~------------~np~r~l~F~vFDV~~~~~g~~--~s~~er~~~L~~lG-~~~vp~~---~~~~--------- 214 (389)
T 2vug_A 162 YLVEGP------------PYVKEDIQFFLFDVQEIKTGRS--LPVEERLKIAEEYG-INHVEVF---GKYT--------- 214 (389)
T ss_dssp SCSCCC------------TTCCSSCEEEEEEEEETTTCCB--CCHHHHHHHHHHHT-CCBCCEE---EEEE---------
T ss_pred HHHhcc------------cCcccCCEEEEEEeeccCCCCc--CCHHHHHHHHHHcC-CCCCCeE---EEEc---------
Confidence 532210 0114579999999988873332 78999999999984 2222222 2221
Q ss_pred cccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1134 ~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
..+.+++.++++.+...+.||||+|..+
T Consensus 215 -~~~~eel~~~i~~~~~~~~EGvViK~~d 242 (389)
T 2vug_A 215 -KDDVDELYQLIERLSKEGREGIIMKSPD 242 (389)
T ss_dssp -GGGHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred -CCCHHHHHHHHHHhcCCCCCeEEEEECC
Confidence 1256899999999999999999999864
|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-12 Score=139.82 Aligned_cols=190 Identities=16% Similarity=0.147 Sum_probs=125.4
Q ss_pred CCCeeE-eCCccEEEecCCcC-----------------------C------CCccEEEeccCChhhhCCcccC--CCCce
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA-----------------------A------DFSVSYFLSHFHSDHYTGLSPS--WSKGI 85 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~-----------------------~------~~i~avfITHaH~DHiggL~~l--~~~~p 85 (1176)
.+++.+ ..|..+|+|++-.. . .++++|||||.|.||++++..+ ..+.+
T Consensus 12 ha~~li~~~g~~iLiDp~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~iliTH~H~DH~~~~~~~~~~~~~~ 91 (264)
T 3rpc_A 12 NATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLDHWDDTAINSIPKSLP 91 (264)
T ss_dssp TTEEEEEETTEEEEESCCCCCTTCBCCCTTBTTTTSCBSSSCCSSCHHHHHTTCCEEECSCCCGGGSCHHHHHHSCTTSC
T ss_pred CcEEEEEECCEEEEeCcccCCCcCccCCCCcccccccCCCCCCCCCHHHccccCCEEEECCCchhhCCCHHHHhhccCCe
Confidence 456667 78999999994110 0 1689999999999999998753 34789
Q ss_pred EEeC-HHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCCcC--------------ceEEEEEEcCCCCcccE
Q 001045 86 IFCS-EITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPG--------------AVQFLFKVPGRNGGFER 150 (1176)
Q Consensus 86 IY~s-~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pG--------------S~~flie~~~~~G~~~~ 150 (1176)
||++ ..+...+.. .++. .+..+ ++++++++++|+++++.|.++ +++|+|+.++ | ++
T Consensus 92 v~~~~~~~~~~l~~-~g~~--~~~~~--~~~~~~~~~~i~~~pa~H~~~~~~~~p~~~~~~~~~~g~~i~~~~--~--~~ 162 (264)
T 3rpc_A 92 IFVQNTADKELITS-QGFI--DVRII--FESLEFNGITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAAD--E--PT 162 (264)
T ss_dssp EEESSHHHHHHHHH-TTCS--CEEEC--SSEEEETTEEEEEECCCSSCHHHHTSTTHHHHHCCCCEEEEECTT--S--CC
T ss_pred EEEeCHHHHHHHHh-cCCC--eeEEe--cccEEECCEEEEEeccccCCccccccccccccccccEEEEEEeCC--c--cE
Confidence 9999 888887764 3443 23444 689999999999999999654 5899999853 3 69
Q ss_pred EEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--
Q 001045 151 YVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV-- 228 (1176)
Q Consensus 151 IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s-- 228 (1176)
++|+||+.+.+.... .... .++|++++++++..+.......+...+++++.++.+ +.+.+|.+ +|.
T Consensus 163 i~~~GDt~~~~~~~~--~~~~-~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l--------~~~~vi~~-H~~~~ 230 (264)
T 3rpc_A 163 VYLVGDTVWTSDVEK--ALLR-FDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRK--------PEAKIIAV-HMDTV 230 (264)
T ss_dssp EEECCSCCSCHHHHH--HHHH-HCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHC--------TTSEEEEE-SCSSS
T ss_pred EEEECCcCchHHHHH--HHHH-hCCCEEEEecCccccccccCCcccCHHHHHHHHHhC--------CcCeEEEE-ccccc
Confidence 999999988765321 1111 368999999996543211012233334455555443 23443443 333
Q ss_pred -c--chHHHHHHHHHHcCC--cEEE
Q 001045 229 -I--GKEKILIEIFKKCGR--KVCV 248 (1176)
Q Consensus 229 -l--GR~q~ll~ia~~~g~--~I~v 248 (1176)
. .-.+++.+.+++.|. ++.+
T Consensus 231 ~~~~~~~~~l~~~~~~~g~~~~~~~ 255 (264)
T 3rpc_A 231 NHTATSRKDVRKFIKGNNIESHVAV 255 (264)
T ss_dssp TTBCSCHHHHHHHHHHTTCTTTEEC
T ss_pred cccccCHHHHHHHHHHcCCCCcEEe
Confidence 1 334566777776654 4443
|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=139.37 Aligned_cols=167 Identities=24% Similarity=0.283 Sum_probs=113.9
Q ss_pred CcCCCCCc-cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccC---CCCchhHHH-HHHh
Q 001045 951 SMVPGVPI-KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET---TSRFPDLIS-IINE 1025 (1176)
Q Consensus 951 ~l~~g~Pi-~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~---T~~ypdl~~-~l~~ 1025 (1176)
.+-+|-|= +-++ .++..++......|++|+|+||.++-+.+ -+|++..+||+|..+ |.++|++.+ .+.+
T Consensus 49 ~vv~GyP~I~R~~-----~L~~~i~~~f~~~~~veEKLDG~NVRi~~-~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~ 122 (370)
T 3qwu_A 49 FIIWGYPHIGRIF-----LLETGLREQFEAPFWVEEKVDGYNTRIFK-YGDNYYALSRGGFICPFTTDRLPDLIDLRILD 122 (370)
T ss_dssp CEECCCCCCEEES-----CHHHHHHHHCSSCEEEEEECSSEEEEEEE-ETTEEEEECTTSCBCHHHHHHHHHHCCCHHHH
T ss_pred CEECCCCChhhhh-----chhhhhhhcCCCcEEEEEeeCCeEEEEEE-ECCEEEEEcCCCcccCcchhhhhhhcCchhhh
Confidence 45666663 2121 23334444335799999999999988855 388999999999987 666666543 1222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHH
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYL 1105 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL 1105 (1176)
.-++++|||||++-+ -||.. +. .. ....++.|++|||...+ ...-+|+.+|+++|
T Consensus 123 ----~~P~l~LdGEl~g~~-------npy~~-----~s-~~------y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll 177 (370)
T 3qwu_A 123 ----ENPDLVICAEVAGPE-------NPYIE-----ES-PP------YVKEDVQLFVFDFMKKN--EQGFLSQEEKMELI 177 (370)
T ss_dssp ----HCTTEEEEEEEECTT-------CSSCS-----CC-CT------TCCSSCEEEEEEEEETT--CCSCCCHHHHHHHH
T ss_pred ----cCCCeEEEEEEEcCC-------CCccc-----cC-Cc------ccccCceEEEEeCcccc--CCCcCCHHHHHHHH
Confidence 236999999999832 24431 11 01 11346899999999753 34456999999999
Q ss_pred HHhhcccCCCcEEEeEEEEEcCCCCCCcccc--CHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1106 KDLFYDEKMGYFQYAKEMTVEGDDNCLTSDV--SLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1106 ~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~--~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
+++- .+ ++.+..+..+ . +.+++.+++++..+.|.||||+|+++
T Consensus 178 ~~~~-lp---~V~ii~~~~~----------~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 178 EKYN-LP---HVEILGRFTA----------SEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp HHHT-CC---BCCEEEEECS----------SHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred HHCC-CC---CccEEEEeCC----------CCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 9886 22 3334444332 3 56799999999999999999999986
|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=139.04 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=88.8
Q ss_pred CCccEEEeccCChhhhC--CcccC---C-CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCC-
Q 001045 59 DFSVSYFLSHFHSDHYT--GLSPS---W-SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC- 131 (1176)
Q Consensus 59 ~~i~avfITHaH~DHig--gL~~l---~-~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~- 131 (1176)
.++++|||||.|.||++ ++..+ . .+.+||+++.+.+.+.. +++....++.+..|+.+.+++++|+++++.|.
T Consensus 132 ~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 210 (379)
T 3bv6_A 132 KEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG-WGVPQERCIVAKVGDVLEIGDVKIRVLDSFDRT 210 (379)
T ss_dssp CCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCHH
T ss_pred CCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHH-cCCChhhEEEeCCCCEEEECCEEEEEEeccccc
Confidence 35899999999999996 33322 1 26899999999988875 45543457889999999999999999999883
Q ss_pred ------------cC---------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 132 ------------PG---------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 132 ------------pG---------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
+| +++|+|+.++ ++|+|+||+.+.+.... .... .++|++++....
T Consensus 211 ~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g-----~~i~~sGDt~~~~~~~~--i~~~-~~~Dv~il~~g~ 276 (379)
T 3bv6_A 211 ALVTLPKGVSSYDKAILDGMDERAVNYLIETSG-----GSVYHSGDSHYSNYYAK--HGND-YQIDVALLSYGE 276 (379)
T ss_dssp HHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETT-----EEEEECTTCCCCTTHHH--HHHH-SCCSEEEEEBCC
T ss_pred ccccccccccccccccccccCCceEEEEEEeCC-----eEEEEeCCCCccHHHHH--Hhhc-CCCCEEEecCCC
Confidence 23 7999998854 79999999988754211 1111 378999997653
|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-11 Score=137.26 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCccEEEeccCChhhhC--CcccC---C-CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCC-
Q 001045 59 DFSVSYFLSHFHSDHYT--GLSPS---W-SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC- 131 (1176)
Q Consensus 59 ~~i~avfITHaH~DHig--gL~~l---~-~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~- 131 (1176)
.++++|||||.|.||++ ++..+ . ...+||+++.+.+.+.. +++....++.+..|+.+.+++++|+++++.|.
T Consensus 108 ~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 186 (360)
T 2wyl_A 108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIG-WGVPKERCIVVKPGDVVKVKDIEIHALDAFDRT 186 (360)
T ss_dssp CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCC-
T ss_pred CCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHHH-cCCChheEEEcCCCCEEEECCEEEEEEeccCcc
Confidence 46899999999999996 23322 1 26899999999988875 45543457889999999999999999999874
Q ss_pred -----------c---------CceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 132 -----------P---------GAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 132 -----------p---------GS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
+ ++++|+|+.++ ++|+|+||+.+.+.... .... .++|++++....
T Consensus 187 ~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g-----~~i~~sGDt~~~~~~~~--i~~~-~~~Dv~il~~g~ 251 (360)
T 2wyl_A 187 ALITLPADQKAAGVLPDGMDDRAVNYLFKTPG-----GSLYHSGDSHYSNYYAK--HGNE-HQIDVALGSYGE 251 (360)
T ss_dssp -----------------CCTTTBEEEEEEETT-----EEEEECTTCCCCTTHHH--HHHH-SCCCEEEEEBCC
T ss_pred cccccccccccccccccccCcccEEEEEEECC-----cEEEEeCCCCcCHHHHH--HhhC-CCCCEEEecCCC
Confidence 2 38999999854 69999999988754211 1111 378999997653
|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=123.93 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=83.0
Q ss_pred CCCCCeeE-eCCccEEEecCCc----C--CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceE
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY----A--ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIY 108 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~----~--~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~ 108 (1176)
+..+++.+ .++..++||++.. . ..++++|||||.|.||++ ++.+..+.+||
T Consensus 18 ~~~~~~li~~~~~~iLiD~g~~~~~~~~~~~~id~VliTH~H~DH~~-~~~l~~~~~vi--------------------- 75 (220)
T 1vjn_A 18 FGHACFALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNA-HHLVKGNFRVI--------------------- 75 (220)
T ss_dssp EETTEEEEEETTEEEEESCCC-----CCCCCBCSEEECSSCC---CG-GGGCBSSCEEE---------------------
T ss_pred ccCCEEEEEECCEEEEEcCCCCcCCCCcCCCCcCEEEECCCCCCCCC-chHhcCCCEEE---------------------
Confidence 45677777 7889999999742 1 367999999999999998 76543333443
Q ss_pred EeCCCceEEECCEEEEEEecCCCc------C-ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEe
Q 001045 109 PLPIKIPVLIDGCEVVLVGANHCP------G-AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLD 181 (1176)
Q Consensus 109 ~l~~~~~~~i~~~~Vt~~~a~H~p------G-S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~E 181 (1176)
..+..+++++++|+++++.|.+ | +++|+|+.++ ++++|+||+.+.+.. ..+..+.++|++++|
T Consensus 76 --~~~g~~~~~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g-----~~i~~~GDt~~~~~~---~~~~~~~~~Dvlil~ 145 (220)
T 1vjn_A 76 --DRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEG-----IKVCHLGDLGHVLTP---AQVEEIGEIDVLLVP 145 (220)
T ss_dssp --CSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETT-----EEEEECTTCCSCCCH---HHHHHHCCCSEEEEE
T ss_pred --cCCCeEEECCEEEEEEeeecCCCCCccCCCcEEEEEEECC-----eEEEEeCCCCCcchH---HHHHhhCCCCEEEEc
Confidence 1123678899999999999965 2 5999999854 799999999887641 122334689999999
Q ss_pred CC
Q 001045 182 TT 183 (1176)
Q Consensus 182 sT 183 (1176)
+.
T Consensus 146 ~g 147 (220)
T 1vjn_A 146 VG 147 (220)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=126.70 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=76.3
Q ss_pred CccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc-----------------CCCceEEeC-CCceEEEC-C
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI-----------------NPKFIYPLP-IKIPVLID-G 120 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~-----------------~~~~i~~l~-~~~~~~i~-~ 120 (1176)
+|++|||||+|.||++|++.+ .+.+||+++.+.+.+...... ....+..++ .++.++++ +
T Consensus 103 ~i~~VilTH~H~DH~gg~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 181 (276)
T 2r2d_A 103 DISTVVLSHLHNDHAGCVEYF-GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPG 181 (276)
T ss_dssp GCSEEECSCCSTTTSTTGGGC-SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETT
T ss_pred HCCEEEecCcccccCCChhhC-CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEecCC
Confidence 589999999999999999986 678999999998877543211 122356676 47888885 7
Q ss_pred EEEEEE-ecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 121 CEVVLV-GANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 121 ~~Vt~~-~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
++|... | ||.+|+++|+++.++ + ++++||||+.+..
T Consensus 182 ~~v~~~~p-gHt~g~~~~~~~~~~--~--~~vl~~GD~~~~~ 218 (276)
T 2r2d_A 182 VNLLNFGT-GHASGMLGLAVRLEK--Q--PGFLLVSDACYTA 218 (276)
T ss_dssp EEEEEEES-SSSSSEEEEEEECSS--S--CEEEEEETTSCCH
T ss_pred EEEEeCCC-CCCceeEEEEEEcCC--C--ceEEEEechhhhH
Confidence 999999 6 999999999998743 1 4899999987654
|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=129.90 Aligned_cols=123 Identities=13% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
...++.+ .++..++||++.. ...+|++|||||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 54 ~~n~~li~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~ 133 (294)
T 3m8t_A 54 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEG 133 (294)
T ss_dssp SSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHHHCCEEEEEGGGHHHHHH
T ss_pred CeEEEEEEECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhccCCEEEEChHHHHHHhc
Confidence 4456666 5778899999831 1125899999999999999998764 36899999999999886
Q ss_pred hhc----------cC-CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 99 ILN----------IN-PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 99 ~l~----------~~-~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
... +. ......+..|+.+.+++++|+++++ ||.+|+++|+++..++ +..++++||||+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~~~~~-~~~~~~lf~GD~~~~ 206 (294)
T 3m8t_A 134 GYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDG-KEDREVLFFCSGTVA 206 (294)
T ss_dssp TCBTTBTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TEEEEEEECCCCCCT
T ss_pred ccccCccccccCCCCCCCCceEeCCCCEEEeCCEEEEEEeCCCCCccCEEEEEEccCC-CccceEEEEcCccCC
Confidence 521 11 1123568889999999999999986 6999999999986431 111279999998643
|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=125.22 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
...++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 24 ~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~ 103 (263)
T 1k07_A 24 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILS 103 (263)
T ss_dssp SBCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEEHHHHHHHHT
T ss_pred CeEEEEEEeCCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHhcCCEEEEcHHHHHHHhc
Confidence 4567777 5778899999842 1135899999999999999998754 26899999999998875
Q ss_pred hh------c------cC-CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 99 IL------N------IN-PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 99 ~l------~------~~-~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. + +. ......+..++.+.+++++|+++++ ||.+|+++|+++..+. |..++++|+||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~i~~pGHt~g~~~~~~~~~~~-~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 104 GGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDH-GKQYQAVIIGSIGV 177 (263)
T ss_dssp TTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TEEEEEEEECCCCC
T ss_pred ccccccccCccccccCCCCCcceEeCCCCEEEECCeEEEEEECCCCCCCcEEEEEecccC-CceeEEEEECCccc
Confidence 32 1 11 1124567888999999999999887 7999999999987411 10027999999854
|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=121.91 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred CccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc------CCCceEEeCCCceEEECCEEEEEEecCCCcC
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI------NPKFIYPLPIKIPVLIDGCEVVLVGANHCPG 133 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~------~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pG 133 (1176)
+|++|||||+|.||++|++.+. +.+||+++.+.+.+.....+ ....+..+ .+....+++++|...| ||.+|
T Consensus 100 ~I~~VilTH~H~DH~gg~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~p-GHt~g 176 (254)
T 3dha_A 100 DLLYIISSHLHFDHAGGNGAFT-NTPIIVQRTEYEAALHREEYMKECILPHLNYKII-EGDYEVVPGVQLLYTP-GHSPG 176 (254)
T ss_dssp GCSEEECSCCSHHHHTTGGGCS-SSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEE-CSSEEEETTEEEEECC-SSSTT
T ss_pred HCCEEEcCCChhhcCCChHHCC-CCEEEECHHHHHHhhccccccccccCcccceEEe-cCCccccCCEEEEECC-CCCCC
Confidence 3899999999999999998764 78999999999887654221 11122333 3556667887777665 89999
Q ss_pred ceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 134 AVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 134 S~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
+++|+++..+ + ++++||||+-+..
T Consensus 177 ~~~~~~~~~~--~--~~vl~~GD~~~~~ 200 (254)
T 3dha_A 177 HQSLFIETEQ--S--GSVLLTIDASYTK 200 (254)
T ss_dssp CEEEEEEETT--T--EEEEEEETTCSSH
T ss_pred CEEEEEEeCC--C--CEEEEEecccchh
Confidence 9999999853 2 6899999987654
|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=136.37 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=93.0
Q ss_pred CCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+..+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+...+
T Consensus 35 ~n~~li~~~~~iliD~G~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~ 114 (402)
T 1e5d_A 35 YNAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHF 114 (402)
T ss_dssp EEEEEECSSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHHHHH
T ss_pred eEEEEEECCCEEEEeCCCCccHHHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHHCCCCEEEEChHHHHHHHHHh
Confidence 3456666667899999843 1357899999999999999998753 3689999999999998877
Q ss_pred ccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 101 NINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 101 ~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+.+...+..+..|+.+.+++++|+++++ +|.||++++++. + .+++||||+.
T Consensus 115 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~-----~~~l~~GD~~ 167 (402)
T 1e5d_A 115 HYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFA--D-----EKVLISNDIF 167 (402)
T ss_dssp CCSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred CCCCCceEEcCCCCEEEECCCEEEEEeCCCCCCCCcEEEEEC--C-----CCEEEecccc
Confidence 7644457788999999999999999988 599999998773 2 4799999984
|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=131.93 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHHHHh
Q 001045 37 TFPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 37 ~~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll~~~ 99 (1176)
...++.+..+..++||++.. ...++++||+||.|.||++|++.+ +.+.+||+++.+...+...
T Consensus 35 ~~n~~li~~~~~iliD~g~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~ 114 (398)
T 1ycg_A 35 TYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAH 114 (398)
T ss_dssp EECCEEECSSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHH
T ss_pred eEEEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhhhHHHHHHHCCCCEEEEcHHHHHHHHHH
Confidence 34566666666899999843 246799999999999999999875 3468999999999999887
Q ss_pred hccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 100 LNINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
++.+...+..+..|+.+.+++.+++++++ +|.+|++++++. + .+++||||+-
T Consensus 115 ~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~-----~~~lf~GD~~ 168 (398)
T 1ycg_A 115 YSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVP--E-----EALLLPNDAF 168 (398)
T ss_dssp TCSCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred hCCCCcceEEeCCCCEEeeCCcEEEEEeCCCCCCCCcEEEEEC--C-----CcEEEecccc
Confidence 76544457788899999999999999876 599999998763 2 4799999984
|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=121.46 Aligned_cols=113 Identities=18% Similarity=0.040 Sum_probs=89.9
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ ..+..++||++.. ...++++||+||+|.||++|++.+. .+.+||+++.+.+.+...-.
T Consensus 31 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~ 110 (219)
T 3l6n_A 31 ANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGK 110 (219)
T ss_dssp EEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHTTCEEEECHHHHHHHHHTTC
T ss_pred ceEEEEEeCCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHhCCCEEEEcHHHHHHHHhcCC
Confidence 345666 5778899999832 1257999999999999999998753 27899999999998876422
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
......+..++.+.+++++|+++. .+|.+|+++|++.. .+++||||+-+
T Consensus 111 --~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~-------~~~lf~GD~~~ 161 (219)
T 3l6n_A 111 --ATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPK-------YNVLDGGCLVK 161 (219)
T ss_dssp --CCCSEECCTTSEEEETTEEEEEECCCCSSSSSCCEEEETT-------TTEEEEETTSC
T ss_pred --CCCcEecCCCCEEEECCEEEEEEeCCCCCCCCCEEEEECC-------CCEEEECCeee
Confidence 223567888999999999999997 59999999999852 47999999754
|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-10 Score=131.32 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCCeeEe-CCccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 38 FPPSKHV-PNTRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 38 ~p~~~~i-pg~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
..++.+. .+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+
T Consensus 35 ~n~~li~~~~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~~~~~~~~~ 114 (404)
T 2ohh_A 35 YNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGL 114 (404)
T ss_dssp ECCEEEECSSCEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHHHHH
T ss_pred EEEEEEEeCCcEEEEeCCCCccHHHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHHCCCCEEEECHHHHHHH
Confidence 4566664 455899999843 3467999999999999999998753 468999999999998
Q ss_pred HHhhccC-CCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 97 SQILNIN-PKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 97 ~~~l~~~-~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
...++.+ ...+..+..|+.+.+++.+|+++++ ||.+|+++|++.. .+++||||+-
T Consensus 115 ~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~p~gH~~~~~~~~~~~-------~~~lf~GD~~ 172 (404)
T 2ohh_A 115 LKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDE-------DGILFSNDAF 172 (404)
T ss_dssp HHHCGGGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEEET-------TTEEECTTTT
T ss_pred HHHhcccccCCceEcCCCCEEEECCEEEEEEeCCCCCCCCceEEEECC-------CcEEEecCcc
Confidence 8766543 2346788889999999999999998 5999999998853 4699999974
|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=125.36 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred CCCCCCCCCeeEeC-CccEEEecCCcC-------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHH---
Q 001045 32 PPIPRTFPPSKHVP-NTRFLIDAFRYA-------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQ--- 98 (1176)
Q Consensus 32 p~~~r~~p~~~~ip-g~~~liD~~~~~-------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~--- 98 (1176)
+...+...++.+.. +..++||++... ..++++||+||.|.||++|++.+.. +.+||+++.+...+..
T Consensus 14 ~g~~~~~~~~li~~~~~~iLiD~G~~~~~~~l~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~l~~~~~ 93 (261)
T 3adr_A 14 VEFPEIATVYVMCGEKLTVMIDAGVSNSIADFSFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSEDG 93 (261)
T ss_dssp TTCGGGSEEEEEECSSCEEEECCCCTTCCCCCTTCSCCCEEECSCCSGGGTTTHHHHHHHSCCEEEEETTCTHHHHSHHH
T ss_pred CCCCCceEEEEEEcCCcEEEEeCCCCCChhhcCCCCCCcEEEECCCCccccCCHHHHHHHhCCeEEECHHHHHHhcCchh
Confidence 33445666777754 778999998432 2578999999999999999986532 6899999877655431
Q ss_pred -----------------hhcc-----CCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEEC
Q 001045 99 -----------------ILNI-----NPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTG 155 (1176)
Q Consensus 99 -----------------~l~~-----~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTG 155 (1176)
.++. ....+..+..++.+.+++++|+++++ ||.+|+++|.+ .+++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~~~~~~~~---------~~~lf~G 164 (261)
T 3adr_A 94 LKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV---------DDFLFTG 164 (261)
T ss_dssp HHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEE---------TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCccceEecCCCCEEEECCEEEEEEECCCCCCccEEEEE---------CCEEEEc
Confidence 1111 11235678889999999999999997 59999999853 2599999
Q ss_pred CCCCc
Q 001045 156 DFRFC 160 (1176)
Q Consensus 156 Dfr~~ 160 (1176)
|+.+.
T Consensus 165 D~~~~ 169 (261)
T 3adr_A 165 DSAGA 169 (261)
T ss_dssp TSSCE
T ss_pred Ccccc
Confidence 98554
|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=122.50 Aligned_cols=116 Identities=19% Similarity=0.094 Sum_probs=86.7
Q ss_pred CCCeeEe---CCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh---
Q 001045 38 FPPSKHV---PNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI--- 99 (1176)
Q Consensus 38 ~p~~~~i---pg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~--- 99 (1176)
..++.+. .+..++||++... ..++++||+||+|.||++|++.+.. +.+||+++.+.+.+...
T Consensus 13 ~n~~li~~~~~~~~iLiD~G~~~~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 92 (210)
T 2xf4_A 13 QNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPA 92 (210)
T ss_dssp EEEEEEECTTTCEEEEECCCSCHHHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHHTCCEECCCGGGHHHHHTHHH
T ss_pred cEEEEEEecCCCcEEEEcCCCCHHHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHcCCcEEEecchHHHHhccchh
Confidence 4466663 4678999998321 1358999999999999999987542 67999999888776542
Q ss_pred ----hccCC----CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 100 ----LNINP----KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 100 ----l~~~~----~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++.+. .....+..++.+.+++.+|+++++ ||.+|+++|+++ + .+++||||+-+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~--~-----~~~lf~GD~~~~ 155 (210)
T 2xf4_A 93 QSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDE--Q-----SQLLISGDVIFK 155 (210)
T ss_dssp HHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEET--T-----TTEEEEETSEET
T ss_pred hhhhcCCcccCCCCCceEECCCCEEEECCeEEEEEECCCCCCCcEEEEeC--C-----CCEEEECCEecc
Confidence 23211 123457788899999999999987 789999999874 2 479999998544
|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=119.71 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHh
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~ 99 (1176)
....++.+ .++..++||++.. ...+|++||+||+|.||++|++.+. +.+||+++.. +...
T Consensus 33 ~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~-~~~v~~~~~~---~~~~ 108 (221)
T 1ztc_A 33 HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE-NATFYVHEVY---KTKN 108 (221)
T ss_dssp CBCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT-TCEEEEEGGG---GGSC
T ss_pred CceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhhCC-CCEEEEeHHH---hhhh
Confidence 55667777 5778899999832 1236899999999999999998765 7899999872 1110
Q ss_pred ---hc---------c--CCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 100 ---LN---------I--NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 100 ---l~---------~--~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
++ . ....+..++.++.+..++++|...| +|.+|+++|+++.++ + ++++||||+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~v~~~p-GHt~g~~~~~~~~~~--~--~~vlftGD~~~~~ 179 (221)
T 1ztc_A 109 YLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTP-WHAREHLSFLLDTEN--A--GRVLITGDITPNR 179 (221)
T ss_dssp GGGGCHHHHHHHHHHHHTCCSEEEECSCCEETTTTEEEEECC-SSSTTCEEEEEEETT--T--EEEEECGGGSCSH
T ss_pred hhhhccchhhhhhhccccccceEEeCCCCEEECCeEEEEEcC-CCCcccEEEEEEcCC--C--CeEEEEeCccccc
Confidence 00 0 0123567777776642368888777 999999999999853 1 3899999987543
|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=122.10 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=82.3
Q ss_pred CCCCCeeE-eCCccEEEecCCcC-----------------------------CCCccEEEeccCChhhhCCcccCC----
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRYA-----------------------------ADFSVSYFLSHFHSDHYTGLSPSW---- 81 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~~-----------------------------~~~i~avfITHaH~DHiggL~~l~---- 81 (1176)
-.+.++.+ .++..++||++... ..+|++|||||+|.||+||++.+.
T Consensus 46 ~~~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~~ 125 (280)
T 3esh_A 46 LPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAI 125 (280)
T ss_dssp EECCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCS
T ss_pred EeEEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCcccccccccC
Confidence 34567777 67889999998321 136889999999999999998654
Q ss_pred -CCceEEeCHHHHHHHHHhhc-----cC-------CCceEEeCCCceEEE-CCEEEEEEe-cCCCcCceEEEEEEcCCCC
Q 001045 82 -SKGIIFCSEITSRLLSQILN-----IN-------PKFIYPLPIKIPVLI-DGCEVVLVG-ANHCPGAVQFLFKVPGRNG 146 (1176)
Q Consensus 82 -~~~pIY~s~~T~~ll~~~l~-----~~-------~~~i~~l~~~~~~~i-~~~~Vt~~~-a~H~pGS~~flie~~~~~G 146 (1176)
.+.+||+++.+...+..... +. ...+..++. ...+ +++++ ++ .||.||+++|+++.++
T Consensus 126 fp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~gi~~--~~~pGHt~g~~~~~i~~~~--- 198 (280)
T 3esh_A 126 FENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEK--HFEPVPGIKM--QHSGGHSFGHTIITIESQG--- 198 (280)
T ss_dssp STTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESS--EECSSTTEEE--EECCSSSTTCEEEEEEETT---
T ss_pred CCCCEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeCC--CCeEcCCEEE--EEcCCCCcccEEEEEEECC---
Confidence 37899999999888764210 00 011233322 2233 24555 44 4899999999999854
Q ss_pred cccEEEEECCCCCccc
Q 001045 147 GFERYVHTGDFRFCKT 162 (1176)
Q Consensus 147 ~~~~IlYTGDfr~~~~ 162 (1176)
++++||||+-+...
T Consensus 199 --~~vlftGD~~~~~~ 212 (280)
T 3esh_A 199 --DKAVHMGDIFPTTA 212 (280)
T ss_dssp --EEEEECGGGSCSGG
T ss_pred --cEEEEEEccCCchh
Confidence 68999999876543
|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=117.23 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|++.+. .+.+||+++.+.+.+.....
T Consensus 27 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~vi~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~ 106 (223)
T 1m2x_A 27 ANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENK 106 (223)
T ss_dssp EEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHHTTCEEEEEHHHHHHHHHTTC
T ss_pred ccEEEEEeCCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEEEeccCCccccCchhhHhhCCCeEEEcHHHHHHHHhcCc
Confidence 445666 46788999998310 247899999999999999998654 36899999999988875432
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.. ....+..++.+.+++.+|+++. .+|.+|+++|++. + .+++||||+-..
T Consensus 107 ~~--~~~~~~~g~~~~~g~~~i~~~~~~pgHt~~~~~~~~~--~-----~~~lf~GD~~~~ 158 (223)
T 1m2x_A 107 PR--AQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFP--K-----EKVLVGGCIIKS 158 (223)
T ss_dssp CC--CSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEET--T-----TTEEEEETTSCC
T ss_pred cC--CceecCCCceEEECCEEEEEEecCCCCCCCCEEEEEC--C-----CCEEEEeccccc
Confidence 11 1356788889999999999984 5999999999884 2 479999996543
|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.9e-10 Score=124.84 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC-----------------CCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA-----------------ADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRL 95 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~-----------------~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~l 95 (1176)
.....++.+ -++..++||++... ..+|++||+||.|.||+||+..+.. +.+||+++.+...
T Consensus 19 ~~~~n~~li~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~Vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~ 98 (317)
T 2zo4_A 19 LKTVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFAR 98 (317)
T ss_dssp TCEEEEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHHTTCEEEEEGGGTTT
T ss_pred CCcEEEEEEEcCCceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCEEEEcCCCCcccccHHHHHhCCCEEEEcHHHHHH
Confidence 345556666 45578999998321 1358999999999999999986432 6899999988776
Q ss_pred HHHhh-----------------ccC--------------------CCceEEeCCCceEEECCEEEEEEec-CCCcCceEE
Q 001045 96 LSQIL-----------------NIN--------------------PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQF 137 (1176)
Q Consensus 96 l~~~l-----------------~~~--------------------~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~f 137 (1176)
+.... +.+ ......+..|+.+.+++.+++++.+ ||.+|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~ 178 (317)
T 2zo4_A 99 GHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAF 178 (317)
T ss_dssp HHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEEE
T ss_pred HHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccCCCCCCceEECCCCEEEeCCceEEEEECCCCCcccEEE
Confidence 64321 221 1134667889999999999999998 899999999
Q ss_pred EEEEcCCCCcccEEEEECCCCCc
Q 001045 138 LFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 138 lie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++. + .+++||||.-+.
T Consensus 179 ~~~--~-----~~~lf~GD~~~~ 194 (317)
T 2zo4_A 179 YLE--E-----EGVLLAGDALLE 194 (317)
T ss_dssp EET--T-----TTEEEEETSCCS
T ss_pred EeC--C-----CCEEEECCEecC
Confidence 863 2 479999998654
|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=119.63 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=89.4
Q ss_pred CCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh
Q 001045 38 FPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~ 99 (1176)
.+++.+ .++..++||++.. ...++++||+||.|.||++|++.+.. +.+||+++.+...+...
T Consensus 58 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~~ 137 (303)
T 4ax1_B 58 ISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRG 137 (303)
T ss_dssp SCCEEECCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHHCCCEEEEHHHHHHHHHT
T ss_pred ceEEEEEeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhcCCEEEEcHHHHHHHhcc
Confidence 456666 4778899999831 11348999999999999999987542 68999999999998865
Q ss_pred hc------------c-CCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 100 LN------------I-NPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 100 l~------------~-~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. . .....+.+..|+.+.+++++|+++.+ ||.+|+++|+++.... .+...+++||.-+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~--~~~~~~l~gD~l~ 209 (303)
T 4ax1_B 138 LPDRTDPNFEVAEPVAPVANIVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEG--DDCRQMVYADSLT 209 (303)
T ss_dssp SCCTTSTTGGGCCCCCCCSCEEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET--TEEEEEEECCCCC
T ss_pred ccCccccccccccCcCCCCCcEEeCCCCEEEECCeEEEEEeCCCCCccceEEEEEecCC--CceeEEEEeCCcc
Confidence 21 0 11236788899999999999999986 6999999999987431 1122455599744
|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=127.07 Aligned_cols=114 Identities=13% Similarity=0.178 Sum_probs=90.0
Q ss_pred CCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+..+..++||++.. ...++++||+||.|.||+||++.+. .+.+||+++.+.+.+...+
T Consensus 41 ~n~~li~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~ 120 (414)
T 2q9u_A 41 YNSYFIDDECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKILY 120 (414)
T ss_dssp ECCEEECSSSCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHHHHHHHH
T ss_pred eeEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhcCHHHHHHHCCCCEEEECHHHHHHHHHHh
Confidence 4566665577899999842 1257999999999999999998643 4789999999999988776
Q ss_pred ccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 101 NINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 101 ~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+........+..|+.+.+++.+++++++ +|.+|++++++. + .+++||||+-
T Consensus 121 ~~~~~~~~~~~~g~~~~lg~~~~~~~~~p~gHt~~~~~~~~~--~-----~~~lf~GD~~ 173 (414)
T 2q9u_A 121 GMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCP--E-----DKILFSNDGF 173 (414)
T ss_dssp CCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred CCCCCeeEEeCCCCEEEECCeEEEEEeCCCCCCCCceEEEEC--C-----CeEEEEcccc
Confidence 6543356788889999999988888877 599999887653 2 4799999964
|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=117.42 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=88.6
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
..+++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~ 116 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLAR 116 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHHHHHHHHT
T ss_pred CcEEEEEEeCCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHhcCCeEEECHHHHHHHhc
Confidence 4557777 5777899999832 1126899999999999999998754 36899999999988875
Q ss_pred hh------c----cCC-CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 99 IL------N----INP-KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 99 ~l------~----~~~-~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. + +.+ .....+..|+.+.+++++|+++++ ||.+|+++|+++.... |. .+.+++||.-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~g~~~~~~~~~~~-~~-~~~l~~gD~l~ 187 (269)
T 1sml_A 117 GGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRN-GK-PVRIAYADSLS 187 (269)
T ss_dssp TTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TE-EEEEEECCCCC
T ss_pred CCccccccccccCCCCCCCCeEeCCCCEEEECCEEEEEEECCCCCcccEEEEEecccC-Cc-eeEEEEecccc
Confidence 32 1 111 123567788899999999999988 6999999999976321 20 13555599754
|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-10 Score=123.96 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=85.4
Q ss_pred CCCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhh
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l 100 (1176)
...++.+ ..+..++||++-. ...++++||+||.|.||++|++.+.. +.+||+++.+..++....
T Consensus 47 ~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~ 126 (243)
T 4hl2_A 47 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEG 126 (243)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGTT
T ss_pred cceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhCCCeEEECHHHHHHHhccc
Confidence 3455666 4667899999821 12468999999999999999987532 789999999998877543
Q ss_pred ccCCCc------eEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 101 NINPKF------IYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 101 ~~~~~~------i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
...... ...+..++.+.+++++|.....||.+|+++|+++. .+++||||+-+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~~ 185 (243)
T 4hl2_A 127 MVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDG-------TDIAFGGCLIKD 185 (243)
T ss_dssp CCCCSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSSTTCCEEEETT-------TTEEECTTTCCC
T ss_pred ccccccccccccceEecCCCeEEECCEEEEeCCCCCCcCCEEEEEcC-------CCEEEEcceeee
Confidence 221111 12345677778899999444669999999999852 479999998663
|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=117.61 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=88.4
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+... +
T Consensus 37 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~-~ 115 (232)
T 1a7t_A 37 SNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEK-G 115 (232)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHH-T
T ss_pred ceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHhCCCeEEEcHHHHHHHHhc-C
Confidence 445666 4777899999832 0247899999999999999998653 367999999999887753 3
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.. ....+..++.+.+++.+|+++. .+|.+|+++|++.. .+++||||+-+.
T Consensus 116 ~~~-~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~-------~~~lf~GD~~~~ 168 (232)
T 1a7t_A 116 LPV-PEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPT-------ENILFGGCMLKD 168 (232)
T ss_dssp CCC-CSEEESSEEEEEETTEEEEEECCCCSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred CCC-CceecCCCCEEEECCeEEEEEeCCCCCCCCCEEEEECC-------CCEEEEcCcccc
Confidence 322 2456778888999999999995 59999999998842 479999998653
|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=117.14 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=86.8
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|++.+.. +.+||+++.+.+++.. .+
T Consensus 41 ~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~-~~ 119 (227)
T 1mqo_A 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKK-NG 119 (227)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHHTCEEECBHHHHHHHHH-TT
T ss_pred ceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhCCcEEEeccchHHHHHh-cC
Confidence 345555 47778999998321 3579999999999999999986543 6899999999887764 23
Q ss_pred cCCCceEEeCCCceEEECCEEEEEE-e-cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLV-G-ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~-~-a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.. .+..+..++.+.+++++|+++ + .||.+|+++|+++ + .+++||||+-+.
T Consensus 120 ~~~-~~~~~~~~~~~~~g~~~i~~~~~~pgHt~g~~~~~~~--~-----~~~lf~GD~~~~ 172 (227)
T 1mqo_A 120 YEE-PLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLP--Q-----YNILVGGCLVKS 172 (227)
T ss_dssp CCC-CCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEEEET--T-----TTEEEEETTSCC
T ss_pred CCC-CccccCCCCeeeECCEEEEEEecCCCCCCCCEEEEEC--C-----CCEEEEeeeeec
Confidence 322 234556677889999999987 3 5999999999884 2 479999998543
|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=117.82 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=81.1
Q ss_pred CCCCeeE-eCCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh----
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI---- 99 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~---- 99 (1176)
...++.+ .++..++||++... ..++++||+||+|.||++|++.+.. +.+||+++.+.+.+...
T Consensus 12 ~~n~~li~~~~~~iliD~G~~~~~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 91 (207)
T 2zwr_A 12 QENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAA 91 (207)
T ss_dssp TEEEEEEEETTEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHHCCCEEECGGGHHHHHTHHHHH
T ss_pred ccEEEEEEeCCcEEEEeCCCCHHHHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHhCCcEEECHHHHHHHhCchhhh
Confidence 4556777 56778999998321 1358999999999999999987543 68999999999888743
Q ss_pred --hccCCC----ceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 100 --LNINPK----FIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 100 --l~~~~~----~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++.... ....+..|+.+. ++++...| ||.+|+++|+++ + .+++||||+-+.
T Consensus 92 ~~~g~~~~~~~~~~~~~~~g~~i~--~~~~~~~p-GHt~g~~~~~~~--~-----~~~lf~GD~~~~ 148 (207)
T 2zwr_A 92 RAWGLAIPKPPLPVRPLEEGMRLF--GFQVLHLP-GHSPGHVAFYDP--E-----GAQVFSGDLLFR 148 (207)
T ss_dssp HHTTCCCCCCCSCCEECCTTCEET--TEEEEECC-SSSTTCEEEEET--T-----TTEEEEETSEET
T ss_pred hhcCCCCCcCCCCceEeCCCCEEE--EEEEEeCC-CCCCCcEEEEEC--C-----CCEEEEecccCC
Confidence 232111 234566666554 55555433 799999999985 2 479999998543
|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=116.96 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=82.0
Q ss_pred CCCeeE-eCCccEEEecCCcC------------------------------CCCccEEEeccCChhhhCCcccCCCCceE
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA------------------------------ADFSVSYFLSHFHSDHYTGLSPSWSKGII 86 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~------------------------------~~~i~avfITHaH~DHiggL~~l~~~~pI 86 (1176)
..++.+ .++..+|||++... ..+|++|||||+|.||++|++.+ .+.+|
T Consensus 35 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~~~-~~a~v 113 (274)
T 3aj3_A 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYF-PHAKK 113 (274)
T ss_dssp EEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHHHTTCCGGGCCEEECSCCSGGGTTTGGGC-TTSEE
T ss_pred EEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHHHcCCCHHHCCEEEecCcCcccCCchhhC-CCCEE
Confidence 345555 47778999998421 13589999999999999999876 57899
Q ss_pred EeCHHHHHHHHHhhc----------c--------------------CCCceEEeCCCceEEECC-EEEEEEecCCCcCce
Q 001045 87 FCSEITSRLLSQILN----------I--------------------NPKFIYPLPIKIPVLIDG-CEVVLVGANHCPGAV 135 (1176)
Q Consensus 87 Y~s~~T~~ll~~~l~----------~--------------------~~~~i~~l~~~~~~~i~~-~~Vt~~~a~H~pGS~ 135 (1176)
|+++.+.+.+..... + ....+..++ ..+++++ ++|...| ||.+|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~v~~~p-GHt~g~~ 190 (274)
T 3aj3_A 114 ICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGID--GDVDLARGVKLISTP-GHSIGHY 190 (274)
T ss_dssp EEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCTTCCSTTSCEEEEC--SSEEEETTEEEEECT-TSSTTCE
T ss_pred EECHHHHHHHhCcCCccccccChhhhccccccccccccccccccccCCCCceEcC--CccccCCEEEEEECC-CCCceee
Confidence 999999887753210 0 011234443 3466777 6665554 7999999
Q ss_pred EEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 136 QFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 136 ~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
+|+++.++ + ++++||||+-+..
T Consensus 191 ~~~~~~~~--~--~~~lf~GD~~~~~ 212 (274)
T 3aj3_A 191 SLLVEFPR--R--KPILFTIDAAYTQ 212 (274)
T ss_dssp EEEECCSS--S--CCEEEEETTCSSH
T ss_pred EEEEECCC--C--CEEEEEechhhhH
Confidence 99998642 1 5899999976543
|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=121.27 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=86.9
Q ss_pred CCCCeeE--eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 37 TFPPSKH--VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 37 ~~p~~~~--ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
..+++.+ ..+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~a~v~~~~~~~~~~ 102 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAW 102 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCTTCEEEEEHHHHHHT
T ss_pred CceEEEEEeCCCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHhCCCCeEEECHHHHHHH
Confidence 4556776 4667799999842 2357899999999999999998753 468999999988765
Q ss_pred HHh--------h--------cc-------CCCceEEeCCCceEEECC-EEEEEEec-CCCcCceEEEEEEcCCCCcccEE
Q 001045 97 SQI--------L--------NI-------NPKFIYPLPIKIPVLIDG-CEVVLVGA-NHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 97 ~~~--------l--------~~-------~~~~i~~l~~~~~~~i~~-~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~I 151 (1176)
... + +. ....+..+..|+.+.+++ ++++++.+ ||.+|+++|++.. .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~~-------~~~ 175 (303)
T 2vw8_A 103 KSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVR-------RRR 175 (303)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEETT-------TTE
T ss_pred hccchhhHHHHHHHHHHHhhcccccccCCCCCCceEcCCCCEEecCCCeEEEEEECCCCCcccEEEEECC-------CCE
Confidence 421 1 00 011246778889999987 88888887 8999999998852 479
Q ss_pred EEECCCC
Q 001045 152 VHTGDFR 158 (1176)
Q Consensus 152 lYTGDfr 158 (1176)
+||||.-
T Consensus 176 lf~GD~~ 182 (303)
T 2vw8_A 176 LFCGDAL 182 (303)
T ss_dssp EEEETTT
T ss_pred EEEcCcc
Confidence 9999973
|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-09 Score=122.18 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCC------CCceEEeCHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSW------SKGIIFCSEIT 92 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~------~~~pIY~s~~T 92 (1176)
.....++.+ -.+..++||++... ..++++||+||.|.||+||++.+. ...+||+++.+
T Consensus 29 ~~~~n~~li~~~~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~ 108 (289)
T 4ad9_A 29 LQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRN 108 (289)
T ss_dssp BTCCEEEEECSSSSEEEECCCSTTCHHHHHHHHHHHHHTTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCS
T ss_pred CCceEEEEEecCCceEEEeCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCC
Confidence 455667777 45678999998321 136999999999999999998642 25689987654
Q ss_pred HHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 93 SRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 93 ~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.... ..+......+..+..|+.+.+++.+++++.+ ||.+|+++|+++. .+++||||.-+
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~g~~~~~gg~~~~~~~~pGHt~~~~~~~~~~-------~~~lftGD~~~ 168 (289)
T 4ad9_A 109 PQRE-EIIGNGEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEE-------ENAIFSGDCIL 168 (289)
T ss_dssp SCCC-CCBTTTTBCEEECCTTCEEEETTEEEEEEECCSSSTTCEEEEETT-------TTEEEEETSSC
T ss_pred cchh-hhccCCCCceEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEcC-------CCEEEEecccC
Confidence 2110 0111122346788999999999999999998 9999999999952 36999999743
|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-09 Score=119.31 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCCCCeeEe---CCccEEEecCCc----------------------CCCCccEEEeccCChhhhCCcccCCC--CceEE
Q 001045 35 PRTFPPSKHV---PNTRFLIDAFRY----------------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIF 87 (1176)
Q Consensus 35 ~r~~p~~~~i---pg~~~liD~~~~----------------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY 87 (1176)
...+.+|.+. .+..++||++.. ...+|++||+||.|.||++|+..+.. +.+||
T Consensus 14 ~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~a~i~ 93 (298)
T 4efz_A 14 ATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLSAAPYLKTRVGGEIA 93 (298)
T ss_dssp TTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBCCHHHHHHHHCCEEE
T ss_pred CcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhhhHHHHHHHhCCcEE
Confidence 3445556663 234799999731 01368999999999999999987543 68999
Q ss_pred eCHHHHHHHHHh---hccCC-------CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCC---CCcccEEEE
Q 001045 88 CSEITSRLLSQI---LNINP-------KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGR---NGGFERYVH 153 (1176)
Q Consensus 88 ~s~~T~~ll~~~---l~~~~-------~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~---~G~~~~IlY 153 (1176)
+++.+..++... ++... .....+..|+.+.+++++|+++.+ ||.+|+++|++...++ ++ ..++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~--~~~lf 171 (298)
T 4efz_A 94 IGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDAR--DAAAF 171 (298)
T ss_dssp EETTHHHHHHHHHHHTTCCTTSCSSSTTSSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGGC--BCEEE
T ss_pred EChhHHHHHHHHHHhcCCcccccccccCCCEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccCC--ceEEE
Confidence 999888776532 22221 123678889999999999999998 7999999999987430 00 23999
Q ss_pred ECCCCCcc
Q 001045 154 TGDFRFCK 161 (1176)
Q Consensus 154 TGDfr~~~ 161 (1176)
|||+-+.+
T Consensus 172 tGD~l~~~ 179 (298)
T 4efz_A 172 VGDTLFMP 179 (298)
T ss_dssp CCSSBCCT
T ss_pred EcCccccC
Confidence 99986543
|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=118.84 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=82.0
Q ss_pred CeeEe-C--CccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHhhccCCC
Q 001045 40 PSKHV-P--NTRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 40 ~~~~i-p--g~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
+|.+. + +..++||++.. ...++++||+||.|.||++|+..+.. +.+||+++.+...+. .
T Consensus 14 ~yli~~~~~~~~~lID~g~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~-------~ 86 (254)
T 1xm8_A 14 AYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIP-------G 86 (254)
T ss_dssp EEEEECTTTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGGGGGST-------T
T ss_pred EEEEEECCCCEEEEEeCCCHHHHHHHHHHcCCCccEEEECCCCCcccccHHHHHHHcCCeEEEchhhhhcCC-------C
Confidence 55553 2 45789999732 12468999999999999999987542 689999988754322 1
Q ss_pred ceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
....+..|+.+.+++.+++++.+ ||.+|+++|+++. .+++||||+-+.
T Consensus 87 ~~~~~~~g~~~~lg~~~~~vi~tPGHt~g~~~~~~~~-------~~~lftGD~l~~ 135 (254)
T 1xm8_A 87 IDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPG-------SRAIFTGDTMFS 135 (254)
T ss_dssp EEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGG-------GTEEEEETTEET
T ss_pred CceeeCCCCEEEECCEEEEEEECCCCCCCcEEEEECC-------CCEEEEcCcccc
Confidence 24567889999999999999987 8999999999853 469999998543
|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-09 Score=115.76 Aligned_cols=113 Identities=19% Similarity=0.101 Sum_probs=85.6
Q ss_pred CCCCCeeEe-C----CccEEEecCCcC-----------CCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHH
Q 001045 36 RTFPPSKHV-P----NTRFLIDAFRYA-----------ADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLL 96 (1176)
Q Consensus 36 r~~p~~~~i-p----g~~~liD~~~~~-----------~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll 96 (1176)
....+|.+. + +..++||++... ..++++||+||.|.||++|+..+ +...+||+++.+..
T Consensus 13 ~~~~~yli~~~~~~~~~~ilID~g~~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~-- 90 (245)
T 2gcu_A 13 SSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGS-- 90 (245)
T ss_dssp TTEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEEEEGGGCC--
T ss_pred CceEEEEEEcCCCCCCcEEEEeCCCchHHHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhCCCCeEEecccccc--
Confidence 345566663 3 568999998421 13589999999999999999875 45789999987632
Q ss_pred HHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCC-CCcccEEEEECCCCCc
Q 001045 97 SQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGR-NGGFERYVHTGDFRFC 160 (1176)
Q Consensus 97 ~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~-~G~~~~IlYTGDfr~~ 160 (1176)
.....+..|+.+.+++++|+++.+ ||.+|+++|+++..++ ++ .+++||||+-+.
T Consensus 91 --------~~~~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~--~~~lftGD~~~~ 146 (245)
T 2gcu_A 91 --------KADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQ--PRMAFTGDAVLI 146 (245)
T ss_dssp --------CCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCS--SCEEEEETTSBT
T ss_pred --------cCCEEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCcccccc--ccEEEECCcccc
Confidence 123567889999999999999987 8999999999976421 01 379999998654
|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=119.41 Aligned_cols=115 Identities=14% Similarity=0.258 Sum_probs=79.6
Q ss_pred CeeE-eCCccEEEecCCcC-------------------CCCccEEEeccCChhhhCCccc----CCCCceEEeCHHHHHH
Q 001045 40 PSKH-VPNTRFLIDAFRYA-------------------ADFSVSYFLSHFHSDHYTGLSP----SWSKGIIFCSEITSRL 95 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~~~-------------------~~~i~avfITHaH~DHiggL~~----l~~~~pIY~s~~T~~l 95 (1176)
++.+ .++..+|||++... ..+|++|||||.|.||++|+.. .+.+.+||+++.+.+.
T Consensus 99 ~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~~~fp~a~v~~~~~~~~~ 178 (331)
T 1p9e_A 99 GYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKEADF 178 (331)
T ss_dssp EEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHHHHHH
T ss_pred EEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCcccccccccCCCCEEEECHHHHHH
Confidence 5555 47778999998331 1368999999999999999984 3457899999999876
Q ss_pred HHHhh---ccC--------------------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEE
Q 001045 96 LSQIL---NIN--------------------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYV 152 (1176)
Q Consensus 96 l~~~l---~~~--------------------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~Il 152 (1176)
+.... +.. ...+..++.+..+.. ++++...+ ||.||+++|+++.++ ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-gi~vi~tp-GHtpG~~~~~i~~~~-----~~vl 251 (331)
T 1p9e_A 179 WLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP-GIKALASH-GHTPGHTTYVVESQG-----QKLA 251 (331)
T ss_dssp HSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECST-TEEEEECT-TSSTTCEEEEEEETT-----EEEE
T ss_pred HhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCEEcc-cEEEEEcC-CCChhCEEEEEEECC-----cEEE
Confidence 54211 000 122344555544332 45544433 899999999999753 6899
Q ss_pred EECCCCCcc
Q 001045 153 HTGDFRFCK 161 (1176)
Q Consensus 153 YTGDfr~~~ 161 (1176)
|+||+-+..
T Consensus 252 f~GD~~~~~ 260 (331)
T 1p9e_A 252 LLGDLILVA 260 (331)
T ss_dssp ECTTSCCCH
T ss_pred EEECccCcc
Confidence 999987654
|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-09 Score=117.81 Aligned_cols=110 Identities=20% Similarity=0.165 Sum_probs=82.2
Q ss_pred CeeE-e--CCccEEEecCCc----------C----C-----CCccEEEeccCChhhhCCcccCCC---------CceEEe
Q 001045 40 PSKH-V--PNTRFLIDAFRY----------A----A-----DFSVSYFLSHFHSDHYTGLSPSWS---------KGIIFC 88 (1176)
Q Consensus 40 ~~~~-i--pg~~~liD~~~~----------~----~-----~~i~avfITHaH~DHiggL~~l~~---------~~pIY~ 88 (1176)
+|.+ . .+..++||++.. . . .++++||+||.|.||++|+..+.. +.+||+
T Consensus 42 ~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~ 121 (311)
T 2p18_A 42 SYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVG 121 (311)
T ss_dssp EEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEE
T ss_pred EEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEE
Confidence 5666 3 256899999511 1 1 468999999999999999986432 579999
Q ss_pred CHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCccc-EEEEECCCCCc
Q 001045 89 SEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFE-RYVHTGDFRFC 160 (1176)
Q Consensus 89 s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~-~IlYTGDfr~~ 160 (1176)
++... + +.....+..|+.+.+++++|+++.+ ||.+|+++|+++.+++++ . +++||||+-+.
T Consensus 122 ~~~~~--------~-~~~~~~l~~g~~l~lg~~~l~vi~tPGHT~g~i~~~~~~~~~~~--~~~~lftGD~l~~ 184 (311)
T 2p18_A 122 GANDS--------I-PAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPN--DGVALFTGDTMFI 184 (311)
T ss_dssp EGGGT--------C-TTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGG--GCEEEEEETTEET
T ss_pred echhc--------C-CCCceEeCCCCEEEECCeEEEEEECCCCCcccEEEEEecCCcCC--cCCEEEEcCcccc
Confidence 87652 1 1234677889999999999999998 999999999997543111 3 79999998543
|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=113.99 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=83.1
Q ss_pred CCeeE-eCCccEEEecCCc-------------C-CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhcc
Q 001045 39 PPSKH-VPNTRFLIDAFRY-------------A-ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~-------------~-~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
.++.+ .++..++||++.. . ..++++|++||+|.||++|+..+. .+.+||+++.+.+.+......
T Consensus 69 n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~~i~~VilTH~H~DH~gg~~~~~~~~a~v~~~~~~~~~~~~~~~~ 148 (265)
T 2y8b_A 69 NGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNE 148 (265)
T ss_dssp EEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEECHHHHHHHHHTTCC
T ss_pred eEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCChhhcCCHHHHhhCCCeEEECHHHHHHHHhcccc
Confidence 34444 3567899999831 0 236899999999999999998643 368999999999988764322
Q ss_pred CCCc-eEE-eCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 103 NPKF-IYP-LPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 103 ~~~~-i~~-l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.... +.. .+.++.+.++++++.....||.||+++|+++. .+++|+||+-+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~g~~~v~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~~ 201 (265)
T 2y8b_A 149 VPAHSLKALSSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPA-------VRVLFGGCAVHE 201 (265)
T ss_dssp CCSEECSSCSSTTEEEEETTEEEEECCSSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred cccccccccCCCCcEEeecCEEEEecCCCCCCCCEEEEecC-------CCEEEEcccccc
Confidence 1111 111 25566788889888766679999999998852 369999998654
|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-09 Score=128.37 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=89.0
Q ss_pred CCCCeeE---eCCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhc
Q 001045 37 TFPPSKH---VPNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 37 ~~p~~~~---ipg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~ 101 (1176)
.+.+|.+ ..+..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+...+...+.
T Consensus 15 ~~n~yli~~~~~~~~ilID~g~~~~~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~ 94 (474)
T 3tp9_A 15 AHASYLVGCQETGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRAGAAICVSDEGPPEWKSEYV 94 (474)
T ss_dssp TEEEEEEEETTTCEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCGGGCCGGG
T ss_pred eeEEEEEEECCCCEEEEEcCCCChHHHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHHCCcEEEcCcchhhhccccc
Confidence 4556666 24667999998321 136899999999999999998754 26899998877544332111
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.......+..|+.+.+++++|+++.+ ||.||+++|++...++++...+++||||+-+..
T Consensus 95 -~~~~~~~~~~g~~~~~g~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~lf~~ 154 (474)
T 3tp9_A 95 -KAYPHRLLKDGDELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVG 154 (474)
T ss_dssp -GGSSEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSEETT
T ss_pred -ccccceECCCCCEEEECCEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCccccC
Confidence 11124678899999999999999998 799999999998743100001799999985543
|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-09 Score=112.02 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=82.6
Q ss_pred CCCeeEe-CC-ccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHV-PN-TRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~i-pg-~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+. ++ ..++||++... .....+||+||+|.||+||++.+. .+.+||+++.+.+.+....
T Consensus 30 ~n~~li~~~~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~ 109 (246)
T 2fhx_A 30 SNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEEN 109 (246)
T ss_dssp EEEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCccccChHHHHhhcCCEEEEcHHHHHHHHhcc
Confidence 3456653 43 57999997320 122347999999999999998653 2679999999998875321
Q ss_pred -----------c-------------cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEE
Q 001045 101 -----------N-------------INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHT 154 (1176)
Q Consensus 101 -----------~-------------~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYT 154 (1176)
. +.+..+..+..|+.+.+++.+++++. .||.+|+++|+++. .+++||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~~~~~~pGHt~g~~~~~~~~-------~~~lf~ 182 (246)
T 2fhx_A 110 KKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPK-------KKLLFG 182 (246)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSSSTTCCEEEETT-------TTEEEE
T ss_pred hhhhHHHHhhhccccchhhhcccccCCCCceeecCCCCEEEECCEEEEEEeCCCCCCCCCEEEEEcC-------CCEEEE
Confidence 0 01122345677888999999999984 48999999998742 479999
Q ss_pred CCCCC
Q 001045 155 GDFRF 159 (1176)
Q Consensus 155 GDfr~ 159 (1176)
||+-+
T Consensus 183 GD~~~ 187 (246)
T 2fhx_A 183 GCMIK 187 (246)
T ss_dssp ETTCC
T ss_pred CCEec
Confidence 99855
|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=123.47 Aligned_cols=163 Identities=9% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH-----------------HHhhccCCCceE--EeCCCceE
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL-----------------SQILNINPKFIY--PLPIKIPV 116 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll-----------------~~~l~~~~~~i~--~l~~~~~~ 116 (1176)
.+|++|||||.|.||++|++.+. ...+||+++.+...+ ........ .+. .+..++.+
T Consensus 76 ~~id~vilTH~H~DHiggl~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~g~~~ 154 (547)
T 2bib_A 76 QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGV-SVIQNITQGDAHF 154 (547)
T ss_dssp CCBSCEECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTC-EEECSCCTTTTEE
T ss_pred ccccEEEEcCCCccccCCHHHHHHhCCccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCC-eEEEeecCCCceE
Confidence 35899999999999999998754 234699887543221 11111011 111 24567789
Q ss_pred EECCEEEEEEec---CC-----------CcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhc-cCCCcEEEEe
Q 001045 117 LIDGCEVVLVGA---NH-----------CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNE-FAGCDAVFLD 181 (1176)
Q Consensus 117 ~i~~~~Vt~~~a---~H-----------~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~-~~~vDvLI~E 181 (1176)
.+++++|++++. .| ..+|++|+|+.++ .++|||||+....... . .+.. ..++|+|++-
T Consensus 155 ~~g~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~-----~~iLftGD~~~~~~~e-~-~l~~~~~~~DvLkv~ 227 (547)
T 2bib_A 155 QFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNG-----KKIYLGGDLDNVHGAE-D-KYGPLIGKVDLMKFN 227 (547)
T ss_dssp EETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETT-----EEEEECTTCCSTTSHH-H-HHHHHHCCCSEEECT
T ss_pred ecCCeeEEEecCccccCccccccccCCCCCCcEEEEEEECC-----EEEEecCCccchhhhh-h-hhcccccceeEEEec
Confidence 999999999973 23 4679999999854 6999999998653211 1 1111 2579999862
Q ss_pred CCCCCCCCCCC-ChHHHHHHHHHHHHHHhhhccccCCCeEEEEEecccc---c-hHHHHHHHHHHcCCcEEEc
Q 001045 182 TTYCNPKFLFP-LQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVI---G-KEKILIEIFKKCGRKVCVD 249 (1176)
Q Consensus 182 sTy~~~~~~~p-~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~sl---G-R~q~ll~ia~~~g~~I~vd 249 (1176)
+ |- +.......++ +.+ ..++ ++|++-.- + -.+++++.+++.+.+++..
T Consensus 228 ----H----HG~S~~s~s~~fl---~~v--------~P~~-aiiS~g~~n~~~hP~~evl~~l~~~g~~v~~T 280 (547)
T 2bib_A 228 ----H----HHDTNKSNTKDFI---KNL--------SPSL-IVQTSDSLPWKNGVDSEYVNWLKERGIERINA 280 (547)
T ss_dssp ----T----TTBCSSSSCHHHH---HHH--------CCSE-EEESBSSCSBSSSBCHHHHHHHHTTTCEEEEC
T ss_pred ----c----ccCcccCChHHHH---Hhc--------CCcE-EEEcCCcccccCCCCHHHHHHHHhCCceEEEe
Confidence 1 10 1111112233 222 2232 44433111 1 2567888888888888763
|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7e-09 Score=111.41 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=79.1
Q ss_pred CCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc-
Q 001045 39 PPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN- 101 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~- 101 (1176)
.++.+ -++..++||++.. ...++++||+||.|.||+||+..+. .+.+||+++.+...+.....
T Consensus 27 n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 106 (233)
T 3q6v_A 27 NSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGS 106 (233)
T ss_dssp EEEEEECSSCEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhhChHHHHhhCCCEEEEcHHHHHHHHhhhHH
Confidence 35555 4566799998731 2357899999999999999998764 47899999999988875421
Q ss_pred -----------cC----CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 -----------IN----PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 -----------~~----~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+. ......+..+..+..++++|...+.||.+|++++++.. .+++| ||.-+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~pGHt~g~~~~~~~~-------~~~lf-gD~~~~ 172 (233)
T 3q6v_A 107 IVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPA-------ERVLY-GNCILK 172 (233)
T ss_dssp HHHHHHHHSTTCCCCCCCCCSEEESSCEEETTTTEEEECCCCSSSSSCCEEEETT-------TTEEE-CTTTSC
T ss_pred HHHHHhccccccccccccCCCEEeCCCeEEcCceEEEEECCCCCCcCcEEEEecc-------CCEEE-Cceecc
Confidence 10 00112344443443456776666679999999998853 36888 997544
|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.9e-09 Score=113.83 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CeeEe-C--CccEEEecCCcC---------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCC
Q 001045 40 PSKHV-P--NTRFLIDAFRYA---------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 40 ~~~~i-p--g~~~liD~~~~~---------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
+|.+. + +..++||++... .-++++||+||.|.||++|+..+. ...+||+++... .
T Consensus 14 ~yli~~~~~~~~vlID~G~~~~i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~---------~- 83 (260)
T 1qh5_A 14 MYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRI---------G- 83 (260)
T ss_dssp EEEEEETTTTEEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTTS---------T-
T ss_pred EEEEEECCCCEEEEEcCCCHHHHHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCCCCEEEECcccC---------C-
Confidence 55663 3 467999998321 135899999999999999998653 358999986421 1
Q ss_pred CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.....+..|+.+.+++++++++.+ ||.+|+++|++......+ .+++||||+-+
T Consensus 84 ~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~--~~~lftGD~l~ 137 (260)
T 1qh5_A 84 ALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSE--PPAVFTGDTLF 137 (260)
T ss_dssp TCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSS--CCEEEEETTEE
T ss_pred CCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEeccCCCC--CCEEEEcCccc
Confidence 124567788999999999999987 899999999983210011 57999999744
|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=111.26 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=79.5
Q ss_pred CCeeEeC--CccEEEecCCcC---------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCC
Q 001045 39 PPSKHVP--NTRFLIDAFRYA---------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 39 p~~~~ip--g~~~liD~~~~~---------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
.+|.+.. +..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+. +.
T Consensus 20 ~~yli~~~~~~~vlID~G~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~------~~--- 90 (258)
T 2qed_A 20 YIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQ------DK--- 90 (258)
T ss_dssp EEEEEECTTSEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCEEEECGGGG------GG---
T ss_pred EEEEEEECCCcEEEEeCCCcHHHHHHHHHcCCCCCEEEeCCCCccccCCHHHHHHHCCCCEEEeccccc------CC---
Confidence 3555533 567999998321 136899999999999999998753 348999998762 11
Q ss_pred CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.....+..|+.+.+++.+++++.+ ||.+|+++|+ . .+++||||+-+.
T Consensus 91 ~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~--~-------~~~lftGD~l~~ 138 (258)
T 2qed_A 91 GATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF--S-------RPYLFCGDTLFS 138 (258)
T ss_dssp TCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEE--E-------TTEEEEETTEET
T ss_pred CCcEEeCCCCEEEECCcEEEEEECCCCCCCCeEEE--c-------CCEEEECCCCCC
Confidence 134677889999999999999988 8999999998 2 369999997543
|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=108.98 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=76.4
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ -++..++||++.. ...+|++||+||+|.||+||+..+. .+.+||+++.+...+.....
T Consensus 23 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~ 102 (227)
T 3iog_A 23 ENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWA 102 (227)
T ss_dssp EEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHH
T ss_pred CcEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhhCCCeEEECHHHHHHHHHhhH
Confidence 345555 4667899999831 2357899999999999999998753 47899999999988875321
Q ss_pred ---------cC------CCc-eEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 102 ---------IN------PKF-IYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 102 ---------~~------~~~-i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
.. ... ...+ +..+.+++..++++. .||.||+++|++.. .+++| ||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~pGHt~g~~~~~~~~-------~~~lf-gd~ 166 (227)
T 3iog_A 103 EIVAFTRKGLPEYPDLPLVLPNVVH--DGDFTLQEGKVRAFYAGPAHTPDGIFVYFPD-------EQVLY-GGC 166 (227)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCSEEE--SSCEEETTTTEEEECCCCSSSSSCCEEEETT-------TTEEE-CGG
T ss_pred HHHHHhhcCCCCCCCccccCCCEee--cCeEEEcCcEEEEEecCCCCCCCcEEEEecC-------CCEEE-ccc
Confidence 11 000 1112 234677665566665 59999999998862 36888 774
|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=110.07 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=80.1
Q ss_pred CCCeeE-eCCccEEEecCCcC-------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhcc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA-------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~-------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+.+.+......
T Consensus 33 ~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~ 112 (228)
T 1jjt_A 33 KHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKV 112 (228)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHTTCCEEEEHHHHHHHHHTTCC
T ss_pred ceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHcCCCeeEEEeCCCChhhhccHHHHHhCCCEEEEChHHHHHHHhcCCc
Confidence 345666 56778999998320 136899999999999999998653 268999999999888753221
Q ss_pred CCCceEEeCCCceEEECCEEEEEE-e-cCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 103 NPKFIYPLPIKIPVLIDGCEVVLV-G-ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 103 ~~~~i~~l~~~~~~~i~~~~Vt~~-~-a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
... ..++ +..+.+++..|+++ . .||.+|+++|+++. .+++||||+-+
T Consensus 113 ~~~--~~~~-g~~~~l~~~~i~~~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~ 161 (228)
T 1jjt_A 113 QAT--NSFS-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE-------RKILFGGCFIK 161 (228)
T ss_dssp CCS--EEEC-SSCCEEETTTEEEECCCCSSSTTCCEEEETT-------TTEEEEETTCC
T ss_pred Ccc--cccc-CcceEecCceEEEEecCCCCCCCcEEEEECC-------CcEEEEecccc
Confidence 111 2232 45566766667775 3 49999999998852 47999999854
|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-08 Score=115.06 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCeeEe-CCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC----CCCceEEeCHHHHHHHHHh
Q 001045 39 PPSKHV-PNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 39 p~~~~i-pg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T~~ll~~~ 99 (1176)
.+|++. .+..+|||.+.. ...+|++|++||.|.||+|+++.+ ..+.+|||++.+..++...
T Consensus 53 NsYLI~~~~~~vLIDtg~~~~~~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l~~~ 132 (410)
T 4dik_A 53 NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLLEGF 132 (410)
T ss_dssp EEEEEECSSCEEEECCCCGGGHHHHHHHHTTTSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHH
T ss_pred EEEEEEECCeEEEEeCCCcchHHHHHHHHHHhcCcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHHHhh
Confidence 456663 566799999732 125799999999999999999864 3468999999999999987
Q ss_pred hccCCCceEEeCCCceEEECCEEEEEEec-C-CCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 100 LNINPKFIYPLPIKIPVLIDGCEVVLVGA-N-HCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~-H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
++.. .+..+..|+.+.+|+.+++++++ + |.||++.++. + ++|||||+
T Consensus 133 ~~~~--~~~~v~dGd~l~lG~~~L~~i~tPg~H~p~~~~~y~---~------~iLFsgD~ 181 (410)
T 4dik_A 133 YGIK--DVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL---D------GILFSCDV 181 (410)
T ss_dssp HCCC--CEEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE---T------TEEEEETT
T ss_pred cCcc--ceeEecCCCEEeecceEEEEecCCCCCCCCCeeEEe---C------CceEcccc
Confidence 7643 46789999999999999999998 5 8999988774 1 49999997
|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.6e-09 Score=123.83 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCCCCCCeeEe---CCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHH
Q 001045 34 IPRTFPPSKHV---PNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 34 ~~r~~p~~~~i---pg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~ 98 (1176)
......+|.+. .+..++||++... ..+|++||+||.|.||++|+..+.. +.+||+++.+...+.
T Consensus 33 ~~~~~nsyli~~~~~~~~vlID~g~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~a~v~~~~~~~~~~~- 111 (466)
T 3r2u_A 33 KHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLG- 111 (466)
T ss_dssp TTTTEEEEEEEETTTCEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCTTTS-
T ss_pred CCccceEEEEEeCCCCEEEEEcCCCCHHHHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhhCCeEEECcchhhhhc-
Confidence 34455666663 4567999998321 1369999999999999999987543 689999987543222
Q ss_pred hhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcC--CCCcccEEEEECCCCCcc
Q 001045 99 ILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPG--RNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 99 ~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~--~~G~~~~IlYTGDfr~~~ 161 (1176)
+...+.....+..|+.+.+++++|+++.+ ||.||+++|++...+ .++ .+++||||+-+..
T Consensus 112 -~~~~~~~~~~~~~g~~l~~g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~--~~~lftGD~lf~~ 174 (466)
T 3r2u_A 112 -YKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQV--PMGLFSGDFIFVG 174 (466)
T ss_dssp -CCSCCTTCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECGGGTCCS--CCEEEEETTBCSS
T ss_pred -cccCCCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEcCCCccCCC--ceEEEECCcccCC
Confidence 11112246788899999999999999998 799999999998642 012 4699999986543
|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-07 Score=115.18 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=82.7
Q ss_pred CCCeeEe-CCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHHH
Q 001045 38 FPPSKHV-PNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITSR 94 (1176)
Q Consensus 38 ~p~~~~i-pg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~~ 94 (1176)
..++.+. ++..++||++.. ...+|++|++||.|.||+||+..+. .+.+||+++.+.+
T Consensus 123 ~N~ylI~~~~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~ 202 (658)
T 2cfu_A 123 ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFME 202 (658)
T ss_dssp SCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHH
T ss_pred eEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHH
Confidence 4455553 456799999721 1367999999999999999998764 3689999998766
Q ss_pred HHHH---------------hhcc--CC----------------------CceEEe-CCCceEEECCEEEEEEec-CC-Cc
Q 001045 95 LLSQ---------------ILNI--NP----------------------KFIYPL-PIKIPVLIDGCEVVLVGA-NH-CP 132 (1176)
Q Consensus 95 ll~~---------------~l~~--~~----------------------~~i~~l-~~~~~~~i~~~~Vt~~~a-~H-~p 132 (1176)
.+.. .++. +. .....+ ..|+.+.+++.+++++.+ || .|
T Consensus 203 ~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~~~~p~~~~~~dG~~l~lgg~~l~vi~tPGHhTp 282 (658)
T 2cfu_A 203 AAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESP 282 (658)
T ss_dssp HHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSS
T ss_pred HHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCccCCCCcEEEecCceEEEECCEEEEEEeCCCCCCC
Confidence 5410 1121 00 011334 466788899999999887 78 99
Q ss_pred CceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 133 GAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 133 GS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
|+++|++.. .+++||||.-+.
T Consensus 283 g~i~~~~p~-------~~vLftGD~v~~ 303 (658)
T 2cfu_A 283 AEMNIWLPR-------QKALLMAENVVG 303 (658)
T ss_dssp SBEEEEETT-------TTEEECTTTSCS
T ss_pred CcEEEEECC-------CCEEEEeccccc
Confidence 999998852 479999997653
|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=105.39 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=77.5
Q ss_pred CeeEe-CCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhccC
Q 001045 40 PSKHV-PNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNIN 103 (1176)
Q Consensus 40 ~~~~i-pg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~~ 103 (1176)
+|.+. .+..++||.+. ....+|++|++||+|.||+||+..+. ...++|+++.+..++.......
T Consensus 77 ~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 156 (270)
T 4eyb_A 77 GLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVA 156 (270)
T ss_dssp EEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGGTCCC
T ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhcCcHHHHHHCCCeEEECHHHHHHHHhcCccc
Confidence 34443 45568999861 12357999999999999999998753 3689999999998877543221
Q ss_pred CCce------EEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 104 PKFI------YPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 104 ~~~i------~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.... ..++.+..+..+++.+.....+|.||++++++.. .++|||||+-+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pgHT~g~~~~~~~~-------~~vLfsGD~l~~ 212 (270)
T 4eyb_A 157 AQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDG-------TDIAFGGCLIKD 212 (270)
T ss_dssp CSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSSSSCCEEEETT-------SSEEECTTTCCC
T ss_pred cccccCCCCceeecCceeeecCceeEEecccccCCCCEEEEecC-------CcEEEEeCeecC
Confidence 1111 1122233334456666666679999999988753 469999997543
|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
Probab=98.16 E-value=4e-07 Score=96.21 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=76.9
Q ss_pred CCCCeeE-eCCccEEEecCCcCC---------CCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCC
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYAA---------DFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~~---------~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
...++.+ .++..++||++.... .++++|++||. ||++|+..+. .+.+||+++.+.+.+.. .
T Consensus 23 ~~n~~li~~~~~~iliD~g~~~~~~~~~l~~~g~i~~ii~TH~--DH~gg~~~~~~~~~a~v~~~~~~~~~~~~----~- 95 (201)
T 2p97_A 23 DFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENFPI----Y- 95 (201)
T ss_dssp EEEEEEECCTTCCEEESCCCCCHHHHHHHHHTTCCSEEECSSG--GGCTTHHHHHHHSCCEEEEEGGGTTSCSS----C-
T ss_pred ceeEEEEEeCCeeEEEECCCCcHHHHHHHHhcCCCCEEEECCc--hhhhhHHHHHHhcCCEEEEcHhHhhhhcc----c-
Confidence 3445655 466789999983211 27999999999 9999998653 25899999987654321 1
Q ss_pred CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
....+..++.+. .++++...|+||.+|+++|+++. +++||||+-+..
T Consensus 96 -~~~~~~~g~~~~-~~~~~~~~p~gHt~g~~~~~~~~--------~~lf~GD~~~~~ 142 (201)
T 2p97_A 96 -CDRWLSDGDELV-PGLKVMELQGSKTPGELALLLEE--------TTLITGDLVRAY 142 (201)
T ss_dssp -CSEEECTTCBSS-TTEEEEEECSSSSTTEEEEEETT--------TEEEECSSEEBS
T ss_pred -CceecCCCCEEc-ceEEEEECCCCCCCCcEEEEEcC--------CEEEECcccccc
Confidence 124555565543 26888888889999999998751 499999985543
|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=93.35 Aligned_cols=127 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred CCCeeE-eCCccEEEecCCc------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++.. ...++++|||||.|.||++|++.+. .+.+||+++.+.+ ..+.
T Consensus 33 g~s~li~~~~~~iLiD~G~~~~~~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~~~~~~~v~~~~~~~~---~~~~ 109 (284)
T 2p4z_A 33 GLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILN---KKYA 109 (284)
T ss_dssp SCEEEEEETTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHCTTCEEEEEGGGGS---CEEE
T ss_pred EEEEEEEECCeEEEEeCCCCHHHHHHHHHcCCChhhCCEEEECCCCchhhccHHHHHHHcCCCceecCHHHHH---HHhc
Confidence 345666 5788899999731 1246899999999999999998753 4789999998853 1111
Q ss_pred --------cC----------CCceEEeCCCceEEEC-C-EEEEEEecCCCcCc---eEEEEEEcCCCCcccEEEEECCCC
Q 001045 102 --------IN----------PKFIYPLPIKIPVLID-G-CEVVLVGANHCPGA---VQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 102 --------~~----------~~~i~~l~~~~~~~i~-~-~~Vt~~~a~H~pGS---~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+. ...+..++ .++++. + +.+.+++..|.... .+|.++ .+.|++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~gi~~i~~~~~~h~~~~~~g~~~~~~---------~~~y~~D~- 177 (284)
T 2p4z_A 110 MRKGGQFEEIGFDLSFYEKYKNNFVLID--KDAEIEEGFYVITNTDITYDNEFTTKNFFVEK---------EGKRIPDK- 177 (284)
T ss_dssp ECSSSCEEECSCCHHHHHHHGGGEEEES--SCEEEETTEEEECSCCCCSCCHHHHTTEEEEE---------TTEEEECC-
T ss_pred cCccccccccccccchhhhcCceEEEeC--CCeEEeCCEEEEeeeCCccccccCCCceEEEc---------CCCEecCC-
Confidence 00 01233333 345553 4 56667777773221 246554 14689993
Q ss_pred CcccccchhhhhccCCCc--EEEEeCCC
Q 001045 159 FCKTMLLQPVMNEFAGCD--AVFLDTTY 184 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vD--vLI~EsTy 184 (1176)
+.+.. ..-+.+.| +||++|+.
T Consensus 178 ~~de~-----~~~~~~~dglvli~gcsH 200 (284)
T 2p4z_A 178 FLDEV-----FVVVKEEDGINVVTGCSH 200 (284)
T ss_dssp CTTCC-----EEEEEETTEEEEEESSCT
T ss_pred CCCce-----EEEEEcCCcEEEEECCCC
Confidence 33221 11124678 77888774
|
| >1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.8e-06 Score=93.51 Aligned_cols=173 Identities=20% Similarity=0.203 Sum_probs=111.0
Q ss_pred cCCCCc-ccCChhHH---HHhcc-----CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQ-----NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~-----~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.- .+.+.+++ .+++. .-.|+||+|+||..+-+.+ .+|. |+..|| .|+|+|....-|.. |+
T Consensus 84 ~pMlSL~n~f~~eel~~w~~rv~~~l~~~~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP 161 (332)
T 1ta8_A 84 IPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRY-ENGVFVRGATRGDGTVGENITENLRTVRS-VP 161 (332)
T ss_dssp SCCCCCCEECSHHHHHHHHHHHHHHHSSCCCEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SC
T ss_pred CcCCCccccCCHHHHHHHHHHHHHhcCCCceEEEeeeecceEEEEEE-ECCEEEEEEcCCCCccchhHHHHHHHhcC-Cc
Confidence 499863 33344433 22221 1359999999999999999 5777 899999 88999976543322 22
Q ss_pred hhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEee
Q 001045 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIM 1086 (1176)
Q Consensus 1025 ~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL 1086 (1176)
..+. .+..+.+-||++.- ...|..|..+ ...+ .+..+ ....++.||+|++.
T Consensus 162 ~~L~-~p~~leVRGEv~m~-------~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~i---ta~R~L~ff~y~i~ 230 (332)
T 1ta8_A 162 MRLT-EPISVEVRGECYMP-------KQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKI---VAKRNLNTFLYTVA 230 (332)
T ss_dssp SBCS-SCCCEEEEEEEECC-------HHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHH---HHTSCCEEEEEEES
T ss_pred cccC-CCCeEEEEEEEEEE-------HHHHHHHHHHHHhcCCccccChHHHHHHHHHccChhh---HhhCCCEEEEEecc
Confidence 2222 24569999999973 2457666432 1111 11111 12457999999995
Q ss_pred eeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEec
Q 001045 1087 FANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKS 1160 (1176)
Q Consensus 1087 ~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ 1160 (1176)
..+|... .+..++.+.|+++- -+......+ ..+.+++.++++...+. .-.|||+|-
T Consensus 231 ~~~~~~~--~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKv 292 (332)
T 1ta8_A 231 DFGPMKA--KTQFEALEELSAIG-FRTNPERQL---------------CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKV 292 (332)
T ss_dssp CCTTCCC--SBHHHHHHHHHHTT-CCCCTTCEE---------------ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEE
T ss_pred cccCCCC--CCHHHHHHHHHHcC-CCCCCcceE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEe
Confidence 4444332 68999999999976 333222221 24688999999888665 668999997
Q ss_pred CC
Q 001045 1161 LD 1162 (1176)
Q Consensus 1161 ld 1162 (1176)
-+
T Consensus 293 n~ 294 (332)
T 1ta8_A 293 NE 294 (332)
T ss_dssp SB
T ss_pred cC
Confidence 54
|
| >1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-06 Score=92.91 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=106.2
Q ss_pred ceEEEEEecceeEEEEEEeeCC-eEEEEcC----CCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDG-TVRIFSR----NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g-~V~ifSR----~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
-.|+||+|+||..+-+++. +| =|+..|| .|+|+|....-|.. |+..+. .+..+.+-||++.- ...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~levRGEv~m~-------~~~ 176 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYE-DGYFVQGATRGDGTTGEDITENLKTIRS-LPLRLK-EPVSLEARGEAFMP-------KAS 176 (318)
T ss_dssp CCEEEEEEESSEEEEEEEE-TTEEEEEEECTTSSCEEBCHHHHHTCTT-SCSBCS-SCCCEEEEEEEECC-------HHH
T ss_pred ceEEEEEecccEEEEEEEE-CCEEEEEEccCCCcccHHHHHhHHHhcC-CCcccC-CCCeEEEEEEEEEE-------HHH
Confidence 3599999999999999995 66 5899999 88999876543322 222222 24569999999973 246
Q ss_pred hHHHhhh-hcCCCC--c--------hhhhc----ccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEE
Q 001045 1054 FQELSSR-ERGGKD--S--------VITIK----SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQ 1118 (1176)
Q Consensus 1054 Fq~L~~R-~r~~~~--~--------~i~~~----~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~ 1118 (1176)
|..|..+ ...+.. . ..... ....++.||+|++...+|... .+..++.+.|+++- -+......
T Consensus 177 F~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~~--~t~~e~l~~L~~~G-f~v~~~~~ 253 (318)
T 1b04_A 177 FLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGI--ASHSEALDYLQALG-FKVNPERR 253 (318)
T ss_dssp HHHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTTC--CBHHHHHHHHHHTT-CCCCTTCE
T ss_pred HHHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCCC--CCHHHHHHHHHHcC-CCCCCcce
Confidence 7666432 111000 0 00000 124579999999953333232 68999999999976 33322222
Q ss_pred EeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCCCCCCccc----CCCCCCC
Q 001045 1119 YAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLDVDAGYSP----SKRSDSW 1176 (1176)
Q Consensus 1119 ~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld~~s~Y~p----GkRs~~W 1176 (1176)
+ ..+.+++.++++...+ -.-.|||+|--+ -.|.- ..|+..|
T Consensus 254 ~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~--~~~q~~LG~t~k~PRW 304 (318)
T 1b04_A 254 R---------------CANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDS--FAQQRALGATAKSPRW 304 (318)
T ss_dssp E---------------ESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECB--HHHHHHHCCCSSSCTT
T ss_pred E---------------eCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecC--HHHHHHhCCcCCCCCc
Confidence 1 2467899999988764 466899999754 33332 3456566
|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=7.5e-07 Score=110.56 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=76.5
Q ss_pred CCeeEe-CCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHHHH
Q 001045 39 PPSKHV-PNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITSRL 95 (1176)
Q Consensus 39 p~~~~i-pg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~~l 95 (1176)
.++.+. .+..++||++.. ...+|++|++||.|.||+||+..+. .+.+||+++.+.+.
T Consensus 134 N~~lI~~~~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e~ 213 (668)
T 2yhe_A 134 NMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFMEH 213 (668)
Confidence 344443 455688998721 1256889999999999999998765 35799999986321
Q ss_pred H--H-------------Hhhc--cCC-----------------C-------ceEEeCCCceEEECCEEEEEEec-C-CCc
Q 001045 96 L--S-------------QILN--INP-----------------K-------FIYPLPIKIPVLIDGCEVVLVGA-N-HCP 132 (1176)
Q Consensus 96 l--~-------------~~l~--~~~-----------------~-------~i~~l~~~~~~~i~~~~Vt~~~a-~-H~p 132 (1176)
+ . ..++ ++. . ....+..|+.+.+++.+++++.+ | |.|
T Consensus 214 ~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~dg~~l~lgg~~l~vi~tPG~Htp 293 (668)
T 2yhe_A 214 AVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTTATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAP 293 (668)
Confidence 1 1 0111 000 0 01112346677888888888877 4 999
Q ss_pred CceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 133 GAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 133 GS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
|+++|++.. .++++|||.-+
T Consensus 294 g~i~~~~p~-------~~vLftGD~~~ 313 (668)
T 2yhe_A 294 SDMNIYLPQ-------FKVLNTADNAP 313 (668)
Confidence 999998864 47999999754
|
| >1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.7e-06 Score=94.17 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=108.0
Q ss_pred cCCCCcc-cCChhHH---HHhcc-----CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAKI-TNGVPQV---LKLFQ-----NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~~-~~~~~~~---~~~~~-----~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.-. +.+.+++ .+++. .-.|+||+|+||..+-+++. +|. |+..|| .|+|+|....-|.. |+
T Consensus 87 ~pMlSL~n~f~~eel~~f~~rv~~~l~~~~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP 164 (328)
T 1zau_A 87 ERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGVALSLVYR-EGRLTRASTRGDGRTGEDVTLNARTIAD-VP 164 (328)
T ss_dssp SCCCCCCCBSSHHHHHHHHHGGGTTTCSCSCEEEEEEECSEEEEEECG-GGBCCBCBBCTTSSEECBCHHHHHHSSS-CC
T ss_pred CCCCCccccCCHHHHHHHHHHHHHhcCCCcceEEeeecceEEEEEEEE-CCEEEEEEccCCCcccHHHHHHHHHhcC-CC
Confidence 4898642 2344443 33322 14699999999999999994 664 899999 88999876543321 22
Q ss_pred hhc-C----CCCCCeEEEEEEEEEecCCCCcccChHHHhhhhc-C-----------------CCCchhhhcccccceEEE
Q 001045 1025 EFC-K----PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRER-G-----------------GKDSVITIKSVKVDICVF 1081 (1176)
Q Consensus 1025 ~~~-~----~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r-~-----------------~~~~~i~~~~~~~~v~~~ 1081 (1176)
..+ . ..+..+.+-||++.- ...|..|..+.. . ..+..+ ..+.++.||
T Consensus 165 ~~L~~g~~~~~p~~leVRGEv~m~-------~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~i---ta~R~L~f~ 234 (328)
T 1zau_A 165 ERLTPGDDYPVPEVLEVRGEVFFR-------LDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAV---TARRRLRMI 234 (328)
T ss_dssp SBCCCBTTBCCCSCCEEEEEEBCC-------HHHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHH---HHHSCCBCC
T ss_pred hhhccCCcCCCCCeEEEEEEEEEE-------HHHHHHHHHHHHHcCCccccChHHHHHHHHHccChhh---hhcCcceEE
Confidence 212 1 114458999999973 235666543211 0 011111 123469999
Q ss_pred EEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCce
Q 001045 1082 VFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEG 1155 (1176)
Q Consensus 1082 vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EG 1155 (1176)
+|+|..+++... .+..++.+.|+++- -+.. +... ...+.+++.++++...+. .-.|
T Consensus 235 ~y~i~~~~~~~~--~t~~e~l~~L~~~G-f~v~------~~~~---------~~~~~~ev~~~~~~~~~~R~~l~y~iDG 296 (328)
T 1zau_A 235 CHGLGHVEGFRP--ATLHQAYLALRAWG-LPVS------EHTT---------LATDLAGVRERIDYWGEHRHEVDHEIDG 296 (328)
T ss_dssp CCBCCCCSSCCC--SBHHHHHHHHHTTT-CCCC------CCCC---------CBCHHHHHHHHHHHTTTTCSSCSSCEEE
T ss_pred EEeccccCCCCC--CCHHHHHHHHHHcC-CCCC------CceE---------EeCCHHHHHHHHHHHHHHHhcCCCCCce
Confidence 999965554322 57889999998875 2211 1111 135688999999888665 5689
Q ss_pred EEEecCC
Q 001045 1156 IIVKSLD 1162 (1176)
Q Consensus 1156 lmvK~ld 1162 (1176)
||+|--+
T Consensus 297 vViKvn~ 303 (328)
T 1zau_A 297 VVVKVDE 303 (328)
T ss_dssp EEEEECB
T ss_pred EEEEecC
Confidence 9999754
|
| >1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4 | Back alignment and structure |
|---|
Probab=97.59 E-value=9.5e-05 Score=81.05 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=70.9
Q ss_pred hccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCC----chhHHHH-------HHhhcC-CCCCCeEEEEEEEE
Q 001045 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR----FPDLISI-------INEFCK-PAAGTFILDAEVVA 1042 (1176)
Q Consensus 975 ~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~----ypdl~~~-------l~~~~~-~~~~~~ILDGElVa 1042 (1176)
.+.+..|++++|+||.-+-|.+ .++++.++||++.-.... +..+... +.+.+. ....+++|=||+++
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~-~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G 102 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAG 102 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEE-ESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCCCEEEEEEECCcceEEEE-ECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEcc
Confidence 3456789999999999999998 477899999999864321 2122221 122110 01368999999996
Q ss_pred EecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEee-eeCCcccccCCHHHHHHHHHHh
Q 001045 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIM-FANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1043 ~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL-~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
.. + .+ ++. .. +..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 103 ~~------------I----q~----~v~---Y~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 103 PG------------I----QK----NVD---YC-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TT------------T----SS----SCC---CC-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cc------------c----cC----Ccc---cC-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 31 0 11 011 11 4589999986 4343323456999999999885
|
| >4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.58 E-value=5.5e-05 Score=85.07 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=104.4
Q ss_pred cCCCCc-ccCChhHH---HHh----ccCceEEEEEecceeEEEEEEeeCCe-EEEEcCC----CccCCCCchhHHHHHHh
Q 001045 959 KPMLAK-ITNGVPQV---LKL----FQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRN----GDETTSRFPDLISIINE 1025 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~----~~~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR~----g~d~T~~ypdl~~~l~~ 1025 (1176)
.|||.- .+.+.+++ .++ ++...|+||+|+||.-+-+.+. +|. ++.+||. |+|+|....-|. .|+.
T Consensus 74 ~pMlSL~n~~~~~el~~f~~r~~~~l~~~~~~~epKiDGlavsL~Y~-~G~L~~a~TRGDG~~GeDiT~n~~tI~-~IP~ 151 (305)
T 4glw_A 74 YPLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYE-KGILVAGVTRGDGSIGENITENLKRVK-DIPL 151 (305)
T ss_dssp SCCCCCCEECSHHHHHHHHHHHTTTCSSCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEECHHHHTTST-TSCS
T ss_pred eeeeccCCcCCHHHHHHHHHHHHHhcCCCcEEEEeeecceEEEEEEe-CCeEEEEEecCCCcchhhHHHHHhhcc-CCcc
Confidence 488753 23344443 222 3456799999999999999994 676 8999999 899986533221 1222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hcC-----------------CCCchhhhcccccceEEEEEEeee
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ERG-----------------GKDSVITIKSVKVDICVFVFDIMF 1087 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r~-----------------~~~~~i~~~~~~~~v~~~vFDiL~ 1087 (1176)
.+ +....+.+=||++.- ...|..+-.. ... ..+..+ ....++.||+|++..
T Consensus 152 ~l-~~~~~levRGEv~m~-------~~~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~---~~~r~L~f~~y~~~~ 220 (305)
T 4glw_A 152 TL-PEELDITVRGECYMP-------RASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAV---VAKRNLATFLYQEAS 220 (305)
T ss_dssp BC-SSCCCEEEEEEEECC-------HHHHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHH---HHHSCCEEEEEEESS
T ss_pred cC-CCcccccccceEEee-------hhhHHHHHHHHHhcCCccchhhhHHHhhhhhccCchh---hhhhcceEEEeeecc
Confidence 11 235578999999972 2356655322 110 011111 123469999999876
Q ss_pred eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC----CC--ceEEEecC
Q 001045 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS----SC--EGIIVKSL 1161 (1176)
Q Consensus 1088 lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~----g~--EGlmvK~l 1161 (1176)
-+|. ....++.+.|+++- -.......+ ..+.+++.+++++..+. .+ -|||+|--
T Consensus 221 ~~~~----~s~~e~l~~L~~~G-f~~~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn 280 (305)
T 4glw_A 221 PSTR----DSQEKGLKYLEQLG-FVVNPKRIL---------------AENIDEIWNFIQEVGQERENLPYDIDGVVIKVN 280 (305)
T ss_dssp SCSS----SBHHHHHHHHHHHT-CCCCCCCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEEC
T ss_pred cccc----chHHHHHHHHHhCC-CccCCceEE---------------eCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 6553 36788899998874 222222111 24678888888876543 23 39999954
|
| >2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=81.86 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=71.5
Q ss_pred hccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC-C---chhHHHH----HHhhcCCC----CCCeEEEEEEEE
Q 001045 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS-R---FPDLISI----INEFCKPA----AGTFILDAEVVA 1042 (1176)
Q Consensus 975 ~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~-~---ypdl~~~----l~~~~~~~----~~~~ILDGElVa 1042 (1176)
.+.+..|++++|+||..+-|.+ .++++.++||++.-... . |..++.. +..++... ..+++|=||+++
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~-~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G 103 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAG 103 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEE-ETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEES
T ss_pred ccCCCcEEEEEEecCcceEEEE-ECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEcc
Confidence 4556789999999999999998 57889999999986431 1 1112222 22222111 268999999997
Q ss_pred EecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEee-eeCCcccccCCHHHHHHHHHHh
Q 001045 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIM-FANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1043 ~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL-~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
..- .+ ++. .. +..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 104 ~~I----------------q~----~i~---Y~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 104 PGI----------------QK----NVD---YG-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp BTT----------------BS----SCC---CC-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred Ccc----------------cC----Ccc---cC-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 421 11 011 11 4589999996 3343223457999999999985
|
| >3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=73.40 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=99.1
Q ss_pred ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC--CCCCeEEEEEEEEEecCCCCcc
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP--AAGTFILDAEVVAIDRKNGCKI 1051 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~--~~~~~ILDGElVa~d~~~g~~~ 1051 (1176)
-.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|+..+.. .+..+.+=||++.- .
T Consensus 107 ~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IPl~L~~~~~p~~leVRGEv~m~-------~ 177 (322)
T 3uq8_A 107 LTFCCEPKLDGLAVSILYV-NGELTQAATRGDGTTGEDITANIRTIR-NVPLQLLTDNPPARLEVRGEVFMP-------H 177 (322)
T ss_dssp CEEEEEEEESSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHHTCT-TSCSBCSCSSCCSEEEEEEEEECC-------H
T ss_pred ceEEEEEeeceEEEEEEEe-CCEEEEEEecCCCccchhHHHHHHHhc-CCCccccCCCCCceEEEEEEEEee-------H
Confidence 3699999999999999994 665 899999 5788886532221 12221111 24568899999972 2
Q ss_pred cChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1052 MSFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1052 ~pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
..|..|-.+ ...+ .+..+ ....++.||+|.+...+|..+ .....++.+.|+++- -+.
T Consensus 178 ~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~i---ta~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~G-f~v 252 (322)
T 3uq8_A 178 AGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNI---TSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIG-IPV 252 (322)
T ss_dssp HHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHH---HTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhCCccccchhHHHHHHHhhcChhh---hhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcC-CCC
Confidence 456666422 1111 01111 124579999999987766432 357899999999874 222
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCC------CceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS------CEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g------~EGlmvK~ld 1162 (1176)
...... ..+.+++.++++...+.+ --|||+|--+
T Consensus 253 ~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 292 (322)
T 3uq8_A 253 NPEIRL---------------CNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIND 292 (322)
T ss_dssp CTTCEE---------------EESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESB
T ss_pred CCCcEE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Confidence 222221 246889999998875543 3699999643
|
| >3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00035 Score=78.57 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=97.5
Q ss_pred CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
.-.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|+..+. .+..+.+=||++.- ..
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~-~~~~levRGEv~m~-------~~ 173 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYV-DGYFVQGLTRGDGTTGEDITENLKTIH-AIPLKMK-EPLNVEVRGEAYMP-------RR 173 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHTTCT-TSCSBCS-SCCCEEEEEEEECC-------HH
T ss_pred CceEEEEEeecceEEEEEEE-CCEEEEEEeCCCCccchhHHHHHHHhc-CCccccC-CCCcEEEEEEEEEc-------HH
Confidence 34799999999999999994 665 799999 5788886532221 1221111 13468999999972 23
Q ss_pred ChHHHhhhhcC-CC-----Cch-----hhh----cccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1053 SFQELSSRERG-GK-----DSV-----ITI----KSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1053 pFq~L~~R~r~-~~-----~~~-----i~~----~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
.|..|-.+... +. ..+ ... .....++.||+|++....|... ....++.+.|+++- -+.....
T Consensus 174 ~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~--~t~~e~l~~L~~~G-F~v~~~~ 250 (318)
T 3jsl_A 174 SFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNA--RSQSEALDELDKLG-FTTNKNR 250 (318)
T ss_dssp HHHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCCC--SBHHHHHHHHHHHT-CCCCTTC
T ss_pred HHHHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCCC--CCHHHHHHHHHHCC-CCcCCcc
Confidence 56665432110 00 000 000 0124579999999987665332 57889999999874 2222222
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
.+ ..+.+++.++++...+ ----|||+|--+
T Consensus 251 ~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 286 (318)
T 3jsl_A 251 AR---------------VNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVND 286 (318)
T ss_dssp EE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred eE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Confidence 11 2467899998887643 345799999644
|
| >4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0076 Score=67.82 Aligned_cols=186 Identities=19% Similarity=0.190 Sum_probs=118.1
Q ss_pred hhHHHHhc---cCceEEEEEecceeEEEEEEee------------CC-eEEEEcCCCccCCCCchhH----HHHHHhhc-
Q 001045 969 VPQVLKLF---QNKAFTCEYKYDGQRAQIHKLV------------DG-TVRIFSRNGDETTSRFPDL----ISIINEFC- 1027 (1176)
Q Consensus 969 ~~~~~~~~---~~~~f~~E~KyDGeR~QiH~~~------------~g-~V~ifSR~g~d~T~~ypdl----~~~l~~~~- 1027 (1176)
+.+++.-+ +-....||+|+=|-|+.+.+-. +| .=.+|+|+|+.+-+. +++ ...++..+
T Consensus 68 P~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~ 146 (427)
T 4e6n_A 68 PIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLD 146 (427)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHH
Confidence 34555443 3357899999999999777521 22 468999999998533 333 23232211
Q ss_pred -----C-CCCCCeEEEEEEEEEecCCCC-------------------------------------------cccChHHHh
Q 001045 1028 -----K-PAAGTFILDAEVVAIDRKNGC-------------------------------------------KIMSFQELS 1058 (1176)
Q Consensus 1028 -----~-~~~~~~ILDGElVa~d~~~g~-------------------------------------------~~~pFq~L~ 1058 (1176)
. ...+=+.||||++.|+-+-++ +-++-..|.
T Consensus 147 ~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll 226 (427)
T 4e6n_A 147 KSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELL 226 (427)
T ss_dssp HHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHH
T ss_pred hcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHH
Confidence 1 234447899999999743110 001222222
Q ss_pred hhhcCCCCchh-----------hhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcC
Q 001045 1059 SRERGGKDSVI-----------TIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127 (1176)
Q Consensus 1059 ~R~r~~~~~~i-----------~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~ 1127 (1176)
.|.+.... +. ..-+.--.+.+--|-||-..|....+.|-.--.+.+..+. ...++.+.-.++..|+.
T Consensus 227 ~r~~~r~~-~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~-~~d~~l~~~T~~~~VDl 304 (427)
T 4e6n_A 227 QRFTERSE-MMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYC-TQDDSLIMATNHILVDV 304 (427)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHH-STTCTTBCCCCEEEEET
T ss_pred HHHHHHHH-HHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHH-hcCccceeccccEEeeC
Confidence 22110000 00 0000111488999999999999999999998888889888 45556666666666653
Q ss_pred CCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1128 ~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
.+ ..+.++...++.+....|.||+|||..+
T Consensus 305 ~d-----~~s~~~a~~WW~~lT~~GgEGMVVKP~~ 334 (427)
T 4e6n_A 305 TD-----AESVDKGIKWWEDLTASGGEGMVVKPYD 334 (427)
T ss_dssp TC-----HHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CC-----HHHHHHHHHHHHHHhcCCCceeEecchh
Confidence 22 3566788899999999999999999876
|
| >4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0028 Score=76.98 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=96.9
Q ss_pred ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcC--CCCCCeEEEEEEEEEecCCCCcc
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCK--PAAGTFILDAEVVAIDRKNGCKI 1051 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~--~~~~~~ILDGElVa~d~~~g~~~ 1051 (1176)
-.|+||+|+||.-+-+.+ .+|. ++..|| .|+|+|....-|.. ++..+. ..+..+.+=||++.- .
T Consensus 108 ~~~~~epKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~-------~ 178 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILY-ENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLP-------Q 178 (586)
T ss_dssp -CEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECC-------H
T ss_pred ceEEEEEeecceEEEEEE-eCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEE-------h
Confidence 468999999999999999 4776 899999 57888854322211 111111 124568889999972 2
Q ss_pred cChHHHhhhh-c-C----------------CCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1052 MSFQELSSRE-R-G----------------GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1052 ~pFq~L~~R~-r-~----------------~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
..|..+-.+. . . ..+..+ ....++.|++|++....|..+. ....++.+.|+++- -+.
T Consensus 179 ~~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~---~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~G-f~v 253 (586)
T 4glx_A 179 AGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRI---TAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWG-LPV 253 (586)
T ss_dssp HHHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHH---HHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTT-CCC
T ss_pred hhccccchhhhhccCccchhhHHHHhccccccchhh---hhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcC-CCC
Confidence 3566654321 0 0 011111 1245799999999888875542 46788999998874 222
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ld 1162 (1176)
.....+ ..+.+++.+++++..+. ---|||+|--+
T Consensus 254 ~~~~~~---------------~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~ 293 (586)
T 4glx_A 254 SDRVTL---------------CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNS 293 (586)
T ss_dssp CTTCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred ccceee---------------eccHHHHHHHHHHHHHhhhcccccCCceEEEecc
Confidence 222221 24678888888766543 44799999643
|
| >1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0032 Score=66.21 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=109.6
Q ss_pred cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhh--cC-CCCCCeE
Q 001045 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEF--CK-PAAGTFI 1035 (1176)
Q Consensus 959 ~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~--~~-~~~~~~I 1035 (1176)
+.||++=..++++-+ +.+|++-+-==|.||.|+. .+|....++|+|..+. +|+.. ++.- .. ....-+|
T Consensus 5 ~lmlsEWl~diP~dl----~~~Wl~vp~P~GkRcLvva-~~G~T~~~~k~G~~~~-~F~S~---LPgG~~~~~~~~~~tI 75 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVN-RFSSL---LPGGNRRNSTAKDYTI 75 (204)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTSCEEE-EECCS---SSSSCSSSCCTTCCEE
T ss_pred chhhhhhcccCCCcc----CCCeEEEECCCCcEEEEEe-cCCeEEEECCCCcEEE-EEccc---CCCCCcccCCCCCCEE
Confidence 356665544444432 2478888888899999999 6899999999998652 23211 1100 00 0234699
Q ss_pred EEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC--
Q 001045 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK-- 1113 (1176)
Q Consensus 1036 LDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~-- 1113 (1176)
|||=. ++.+ -+|+|.|+|.+||.++.+-..+-|.--|++-+. +.
T Consensus 76 LDCI~---~e~~------------------------------~tyYVLDvl~W~g~~l~dcetefRffWl~skl~-E~~~ 121 (204)
T 1xk5_A 76 LDCIY---NEVN------------------------------QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLP-EEEG 121 (204)
T ss_dssp EEEEE---EGGG------------------------------TEEEEEEEEEETTEECTTSCHHHHHHHHHHHTT-TSTT
T ss_pred EEEEE---ecCC------------------------------cEEEEEEEEEECCceeecCcHHHHHHHHHHHhc-cccc
Confidence 99853 3211 259999999999999999999999999999883 32
Q ss_pred --------CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1114 --------MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1114 --------~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
+-+|..++...+ +.+.+.+++.....--..|+..=..+ +.|++|.
T Consensus 122 l~~~s~~n~~~f~~lp~~~c-----------~~~~l~~~~~~~~~~~~DGlLFyHK~--a~Y~~G~ 174 (204)
T 1xk5_A 122 LGEKTKLNPFKFVGLKNFPC-----------TPESLCDVLSMDFPFEVDGLLFYHKQ--THYSPGS 174 (204)
T ss_dssp TTSCBTTBSSEEEECCEEEC-----------SHHHHHHHHTCCCSSCEEEEEEEESS--CCCCSEE
T ss_pred cccccccCCcceEecccccC-----------CHHHHHHHHccCCCCCcceEEEEecc--ccccCCC
Confidence 124677777765 35677777765556678899988776 8999983
|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0068 Score=74.72 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=97.5
Q ss_pred eEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC--CCCCeEEEEEEEEEecCCCCccc
Q 001045 980 AFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP--AAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 980 ~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~--~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|.. |+..+.. .+..+.+=||++.- ..
T Consensus 109 ~~~~e~KiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~-------~~ 179 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYE-NGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLP-------QA 179 (671)
T ss_dssp CEEEEEEESSEEEEEEEE-TTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECC-------HH
T ss_pred eEEEEEecceEEEEEEEe-CCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEE-------HH
Confidence 699999999999999995 665 789999 67888754322211 2222221 14458899999972 34
Q ss_pred ChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEeeeeCC-cccccCCHHHHHHHHHHhhcccC
Q 001045 1053 SFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIMFANG-EQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1053 pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG-~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
.|..|-.+ ...+ .++.+ ....++.||+|++...+| .. -....++.+.|+++- -+.
T Consensus 180 ~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~---~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~G-f~v 253 (671)
T 2owo_A 180 GFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRI---TAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWG-LPV 253 (671)
T ss_dssp HHHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHH---HHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHT-CCC
T ss_pred HHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhh---HhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCC-CCC
Confidence 56666432 1111 11111 124579999999965554 32 257889999999985 232
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
.....+ ..+.+++.+++++..+ -.-.|||+|--+
T Consensus 254 ~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~ 293 (671)
T 2owo_A 254 SDRVTL---------------CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNS 293 (671)
T ss_dssp CTTCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred CCccee---------------eCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecC
Confidence 222221 2468899999888744 345899999643
|
| >3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B | Back alignment and structure |
|---|
Probab=96.18 E-value=0.011 Score=66.51 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=108.8
Q ss_pred cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHH--HhhcCCCCCCeEE
Q 001045 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISII--NEFCKPAAGTFIL 1036 (1176)
Q Consensus 959 ~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l--~~~~~~~~~~~IL 1036 (1176)
+.||+.-.-++++-+ +.+|++-+-==|.||.|+. ..|....|+|+|.-+ .+|+...+-- +.. ....-+||
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVa-s~G~T~aysk~G~~l-~~F~S~LPGG~~~~s--~~~~~TIL 177 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCV-NRFSSLLPGGNRRNS--TAKDYTIL 177 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTCCEE-EEECCSSTTTCC------CCCCEEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEe-cCceEEEECCCCCEE-eeeCCCCCCCCcccc--CCCCCEEE
Confidence 467776554554432 2478888888899999999 699999999999664 2333211000 000 02457999
Q ss_pred EEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc----
Q 001045 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE---- 1112 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~---- 1112 (1176)
||= |++.+ -+|+|.|||.+||.++.+.+..-|.-.|++-+.+.
T Consensus 178 DCI---y~e~~------------------------------~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~ 224 (365)
T 3gjx_B 178 DCI---YNEVN------------------------------QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLG 224 (365)
T ss_dssp EEE---EETTT------------------------------TEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTT
T ss_pred EEE---eecCC------------------------------ceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccc
Confidence 985 43221 26999999999999999999999999999988421
Q ss_pred -----CCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1113 -----KMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1113 -----~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
.+-+|...+...+ +.+.+...+..-..--..||.+=.-. +.|.||.
T Consensus 225 e~s~~np~~Fv~lp~~~C-----------~~esL~~~ls~~~pfe~DGLLFYHK~--ahY~~G~ 275 (365)
T 3gjx_B 225 EKTKLNPFKFVGLKNFPC-----------TPESLCDVLSMDFPFEVDGLLFYHKQ--THYSPGS 275 (365)
T ss_dssp SCCSSCCSEEEECCEEEC-----------CHHHHHHHTTCCCSSCEEEEEEEETT--CCCCSEE
T ss_pred ccccCCCCceeccCCCCc-----------CHHHHHHHhccCCCCccceEEEEecc--ccccCCC
Confidence 1224666677665 35666666655555567899988766 8999983
|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0061 Score=67.38 Aligned_cols=53 Identities=21% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCCeeE-eCCccEEEecCCcCC---------CCc-cEEEeccCChhhhCCcccCCCCceEEeCHHHH
Q 001045 38 FPPSKH-VPNTRFLIDAFRYAA---------DFS-VSYFLSHFHSDHYTGLSPSWSKGIIFCSEITS 93 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~~---------~~i-~avfITHaH~DHiggL~~l~~~~pIY~s~~T~ 93 (1176)
..|..+ +.. ++||++.... -++ ++|+|||.|.||+||++.+ .+.+||+++...
T Consensus 30 ~~G~s~lie~--iLiD~G~~~~l~~~l~~~gi~~~~~IvlTH~H~DH~ggl~~l-~~~~v~~~~~~~ 93 (267)
T 3h3e_A 30 EHGFSVLVDS--VLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYL-SGKRVWLRKEAL 93 (267)
T ss_dssp CSSCEEEETT--EEECCCSSSHHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGC-CSCEEEEEGGGG
T ss_pred CcEeHHeeee--EEEECCCcHHHHHHHHHCCcCcCCEEEECCCChhhhCCHHHh-cCCEEEECHHHH
Confidence 334444 444 9999984311 112 8999999999999999988 788999988763
|
| >1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=63.68 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=73.2
Q ss_pred cCceEEEEEecceeEEEEEEe-eCCe--EEEEcCCCccC-CCCc-------hhHHHHHHhhc---C-----CCCCCeEEE
Q 001045 977 QNKAFTCEYKYDGQRAQIHKL-VDGT--VRIFSRNGDET-TSRF-------PDLISIINEFC---K-----PAAGTFILD 1037 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~-~~g~--V~ifSR~g~d~-T~~y-------pdl~~~l~~~~---~-----~~~~~~ILD 1037 (1176)
.+..|.+.+|.||-..-+.+. +++. |++.||++.-- ++.| +++...+++++ . .....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 456899999999999998873 2556 99999998432 2222 34433332221 1 336889999
Q ss_pred EEEEEEecCCC-------------CcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCC---cccccCCHHHH
Q 001045 1038 AEVVAIDRKNG-------------CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANG---EQLLGYTLRQR 1101 (1176)
Q Consensus 1038 GElVa~d~~~g-------------~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG---~~Ll~~Pl~eR 1101 (1176)
||+.+|.-.+. .+..|+... ...+ .+- .....++.|+||||.+.++ +...-++|.+=
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~~--~IQ~----~i~-~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~ 183 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGV--QIQR----EPF-PQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEF 183 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGGC--CSCC----CSS-CCCEEEEEEEEEEEEEESSCCGGGEEECCHHHH
T ss_pred EEEecCccCCccccccccccccCccccCccccc--cccc----ccc-cccCCCceEEEEEEEEecCCCccccccCCHHHH
Confidence 99999862110 000010000 0000 000 0011268999999998763 33456888877
Q ss_pred HHHHHHh
Q 001045 1102 RKYLKDL 1108 (1176)
Q Consensus 1102 r~lL~~~ 1108 (1176)
.+.+.+.
T Consensus 184 ~~~~~~~ 190 (277)
T 1xdn_A 184 VEFSSKV 190 (277)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 7777654
|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.018 Score=70.95 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=105.6
Q ss_pred cCCCCc-ccCChhHH---HHhccC-----ceEEEEEecceeEEEEEEeeCCeEEEEcC----CCccCCCCchhHHHHHHh
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQN-----KAFTCEYKYDGQRAQIHKLVDGTVRIFSR----NGDETTSRFPDLISIINE 1025 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~~-----~~f~~E~KyDGeR~QiH~~~~g~V~ifSR----~g~d~T~~ypdl~~~l~~ 1025 (1176)
.|||.- .+.+.+++ .+++.. -.|+||+|+||.-+ +.+ .+|. +..|| .|+|+|....-|.. |+.
T Consensus 80 ~pMlSL~n~~~~~el~~f~~rv~~~~~~~~~~~~e~KiDGlai-L~Y-e~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~ 155 (667)
T 1dgs_A 80 TRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSV-LYY-EEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPR 155 (667)
T ss_dssp SCCCCCCEECSHHHHHHHHHHTTSSSCSCCEEEEEECCSCEEE-EEE-ETTE-EEEEECSSSEEEBCTGGGTSSTT-SCS
T ss_pred CcCcCccccCCHHHHHHHHHHHHHhcCCCceEEEEEccceeEE-EEE-cCCC-EEEeeCCCcchhhHHHHHhhhcC-CCc
Confidence 489864 23344443 334321 25999999999999 999 5888 99999 78999976543322 222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-h-cC----------------CCCchhhhcccccce--EEEEEEe
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-E-RG----------------GKDSVITIKSVKVDI--CVFVFDI 1085 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~-r~----------------~~~~~i~~~~~~~~v--~~~vFDi 1085 (1176)
.+...+..+.+=||++.- ...|..|-.+ . .+ ..+..+. ...++ .||+|++
T Consensus 156 ~l~~~p~~levRGEv~m~-------~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~---a~r~L~~~~~~y~~ 225 (667)
T 1dgs_A 156 RLKGVPDRLEVRGEVYMP-------IEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVT---AKRGLRATFYALGL 225 (667)
T ss_dssp BCSSCCSEEEEEEEEECC-------HHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHH---HHSCCEEECCCBCT
T ss_pred ccCCCCCeEEEEEEEEEE-------HHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhh---hhCCCCCEEEEEEe
Confidence 222124558899999972 3457666432 1 11 0111111 23457 9999998
Q ss_pred ee-eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEE
Q 001045 1086 MF-ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIV 1158 (1176)
Q Consensus 1086 L~-lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmv 1158 (1176)
++ .++.. -.+..++.+.|+++- -+......+ ..+.+++.+++++..+. .-.|||+
T Consensus 226 ~~~~~~~~--~~t~~e~l~~L~~~G-f~v~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~y~iDGvVi 287 (667)
T 1dgs_A 226 GLGLEESG--LKSQYELLLWLKEKG-FPVEHCYEK---------------ALGAEGVEEVYRRGLAQRHALPFEADGVVL 287 (667)
T ss_dssp TTTTTSCC--CCBHHHHHHHHHHTT-CCCCSCEEE---------------EEHHHHHHHHHHHHHHTTTTSSSCCCEEEE
T ss_pred eccCCCCC--CCCHHHHHHHHHHCC-CCCCccceE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEE
Confidence 41 13222 257889999999875 233332222 23578999999887643 4589999
Q ss_pred ecCC
Q 001045 1159 KSLD 1162 (1176)
Q Consensus 1159 K~ld 1162 (1176)
|--+
T Consensus 288 Kv~~ 291 (667)
T 1dgs_A 288 KLDD 291 (667)
T ss_dssp EESB
T ss_pred EecC
Confidence 9644
|
| >3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0029 Score=76.95 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=94.9
Q ss_pred eEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC-----CCCCeEEEEEEEEEecCCCC
Q 001045 980 AFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP-----AAGTFILDAEVVAIDRKNGC 1049 (1176)
Q Consensus 980 ~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~-----~~~~~ILDGElVa~d~~~g~ 1049 (1176)
.|+||+|+||.=+-+.+ .+|. |+..|| .|+|+|....-|. .|+..+.. .+..+.+=||++.-
T Consensus 117 ~~~~EpKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~~~~~~~~p~~levRGEv~m~------ 188 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIA-DVPERLTPGDDYPVPEVLEVRGEVFFR------ 188 (615)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEECCTTSSSCBCCHHHHHSCS-SSCSSCCCCSSCCCCSEEEEEEEEECC------
T ss_pred eEEEEEEecceEEEEEE-ECCEEEEEEecCCCcchhhHHHHHHhhc-CcchhhcCCcccCCCCeEEEEEEEEEe------
Confidence 69999999999999999 4776 799999 6788875432111 11211111 14468899999972
Q ss_pred cccChHHHhhhhc-CC-----------------CCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1050 KIMSFQELSSRER-GG-----------------KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1050 ~~~pFq~L~~R~r-~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
...|..|-.+.. .+ .+..+ ..+.++.||+|++...+|.. -....++.+.|+++- -
T Consensus 189 -~~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqld~~i---ta~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~G-f 261 (615)
T 3sgi_A 189 -LDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAV---TARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWG-L 261 (615)
T ss_dssp -HHHHHHHHTTCSSSSSCCCSSHHHHHHHHHTCSSTTH---HHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTT-C
T ss_pred -HHHHHHHHHHHHHcCCCcCCChHHHHHHHHHcCChhh---HhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCC-C
Confidence 235665543211 00 01111 12357999999998776532 235678888998873 1
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHH------hCCCceEEEecCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEAL------HSSCEGIIVKSLD 1162 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai------~~g~EGlmvK~ld 1162 (1176)
+.... .. ...+.+++.++++... .----|||+|--+
T Consensus 262 ~v~~~------~~---------~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 303 (615)
T 3sgi_A 262 PVSEH------TT---------LATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDE 303 (615)
T ss_dssp CCCCC------CC---------CBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESB
T ss_pred CCCCC------eE---------eeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Confidence 11111 11 1357899999987663 3445799999744
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.045 Score=67.48 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhcc--------ccCcchhhHHHHHHHhhc
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL--------RIGAMMRTILPALAQAVV 894 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~L--------RiG~~~~tvl~aLa~A~~ 894 (1176)
.++...++-+.+++|+..+ +...|.++|.++|+.+++.+.-|.+++|++.| +.|++++++.++++++++
T Consensus 19 ~~~~f~~~~~~~~~l~~t~---~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g 95 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKIS---SRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATN 95 (621)
T ss_dssp --CBTHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHC
Confidence 5678899999999998765 46789999999999999999999999998875 789999999999999988
Q ss_pred cCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
++. ..+++.|....|+..++..++.
T Consensus 96 ~~~---------------------~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 96 TDE---------------------NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp CCH---------------------HHHHHHHHHHCCHHHHHHHHHH
T ss_pred cCH---------------------HHHHHHHHhcCCHHHHHHHHHh
Confidence 764 2345566777777777766654
|
| >2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.034 Score=46.23 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=39.7
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRG 637 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1176)
+.|.+.|.||.+| |= +-+..++.+|.++.|||++|++..|+.++.+.|
T Consensus 7 ~~~~~~l~~L~~M--GF-~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~~~ 54 (54)
T 2dah_A 7 GHFQVQLEQLRSM--GF-LNREANLQALIATGGDVDAAVEKLRQSSGPSSG 54 (54)
T ss_dssp CSSHHHHHHHHHH--TC-CCHHHHHHHHHHHTSCHHHHHHHHHHHSCSSCC
T ss_pred hhHHHHHHHHHHc--CC-CcHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCC
Confidence 3678889999998 42 456678999999999999999999998876643
|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.18 Score=61.22 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchh-hHHHHHHHHhhccc-------cCcchhhHHHHHHHhhccC
Q 001045 825 LLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREK-EMKFLVRTLVRNLR-------IGAMMRTILPALAQAVVMN 896 (1176)
Q Consensus 825 LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~-E~k~LvRiIlk~LR-------iG~~~~tvl~aLa~A~~~~ 896 (1176)
+...++-+.+++|++.+ +...|.++|.++|+.+++. +.-++++++++.+. .|++++++.++++++++++
T Consensus 4 m~~~~~a~~~~~i~~t~---~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKIS---STLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcC
Confidence 56788888999998654 5678999999999999987 88888999987663 5999999999999999876
Q ss_pred c
Q 001045 897 S 897 (1176)
Q Consensus 897 ~ 897 (1176)
.
T Consensus 81 ~ 81 (558)
T 3gde_A 81 R 81 (558)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.063 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=37.0
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
-++.|.||+.|-.-+ ...|+.+|+...+|++.||+.||+++..
T Consensus 15 ~~e~i~qF~~iTg~~---~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 15 LKGLIQQFTTITGAS---ESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHHTCCC---HHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 356799999997543 8899999999999999999999997653
|
| >2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.45 Score=54.92 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred ceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC-----------CchhHHHHHHhhcCCCCCCeEEEEEEEEEecCC
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS-----------RFPDLISIINEFCKPAAGTFILDAEVVAIDRKN 1047 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~-----------~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~ 1047 (1176)
.++.++.|+||.=+.+.. .+|++.+.||++-.... .+.++.+.+..++ ..++++=||++.-. .
T Consensus 93 ~pv~V~eK~DGslv~~~~-~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~~~l~---~~~~t~~fE~~~pe--n 166 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYL-DGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELA---EDGFTANFEFVAPT--N 166 (375)
T ss_dssp GEEEEEEECCSEEEEEEE-ETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHHHHHH---HTTEEEEEEEECTT--S
T ss_pred CCEEEEEecCCeEEEEEE-ECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHHHHhc---CCCCEEEEEEcCCC--C
Confidence 589999999999976666 58999999999866421 1112222333322 46799999999732 1
Q ss_pred CCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC-CcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEc
Q 001045 1048 GCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN-GEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126 (1176)
Q Consensus 1048 g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln-G~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~ 1126 (1176)
.-++++ .+ ..+++|||.... |+- +|+.++.++.+ +.-. .++...++
T Consensus 167 -~hVl~Y-------------------~~--~~L~L~~i~~n~tg~~---l~~~e~~~~a~--~g~~------~V~~~~~~ 213 (375)
T 2c5u_A 167 -RIVLAY-------------------QE--MKIILLNVRENETGEY---ISYDDIYKDAT--LRPY------LVERYEID 213 (375)
T ss_dssp -CSSSCC-------------------SS--CEEEEEEEEETTTCCB---CCHHHHHHCTT--TGGG------BCCEEECS
T ss_pred -ceeccC-------------------CC--CCEEEEEEEEcCCCcE---ecHHHHHHHHh--hCCC------cCceeecc
Confidence 011111 11 469999988755 444 69999987765 3222 22222221
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1127 ~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
.+++.+..+. ..+.||+|+|..+
T Consensus 214 -----------l~ell~~~~~--~~~~EGfVir~~~ 236 (375)
T 2c5u_A 214 -----------SPKWIEEAKN--AENIEGYVAVMKD 236 (375)
T ss_dssp -----------STHHHHHHHH--CSSCCEEEEEETT
T ss_pred -----------HHHHHHHHhh--CCCCceEEEEecC
Confidence 1233333222 6789999999875
|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.19 Score=62.63 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhh---cchhhHHHHHHHHhhcc-------ccCcchhhHHHHHHH
Q 001045 822 PPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCS---CREKEMKFLVRTLVRNL-------RIGAMMRTILPALAQ 891 (1176)
Q Consensus 822 ~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~---~~~~E~k~LvRiIlk~L-------RiG~~~~tvl~aLa~ 891 (1176)
..++...++-+.+++|++++ +...|.++|.++|+. +++.+.-|.+.++++.| .+|++++++.+++++
T Consensus 53 ~~~~~~~~la~~~~~i~~t~---~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~ 129 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVS---ARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ 129 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHH
Confidence 45788999999999998654 578899999999999 78999999999999775 469999999999999
Q ss_pred hhccCc
Q 001045 892 AVVMNS 897 (1176)
Q Consensus 892 A~~~~~ 897 (1176)
+++.+.
T Consensus 130 ~~g~~~ 135 (688)
T 1x9n_A 130 ATGRQL 135 (688)
T ss_dssp HHTCCH
T ss_pred HHCcCH
Confidence 998765
|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.25 Score=60.15 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhccc-------cCcchhhHHHHHHHhhccCcc
Q 001045 826 LIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR-------IGAMMRTILPALAQAVVMNSS 898 (1176)
Q Consensus 826 Ti~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LR-------iG~~~~tvl~aLa~A~~~~~~ 898 (1176)
...++-+.+++|+..+ +...|.++|.++|+.+++.+..|.++++++.+- .|++++++.++++++++++.
T Consensus 2 ~f~~~a~~~~~l~~t~---~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~- 77 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTT---MKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA- 77 (561)
T ss_dssp BHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH-
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH-
Confidence 3567778888888654 577899999999999999999999999987663 69999999999999988764
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 899 LEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 899 ~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
..+.+.|....|+..++..++.
T Consensus 78 --------------------~~~~~~~~~~GDlg~~~~~~~~ 99 (561)
T 2cfm_A 78 --------------------KEIEESVKDTGDLGESIALAVK 99 (561)
T ss_dssp --------------------HHHHHHHHHHSCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHhcCCHHHHHHHHhc
Confidence 2344556666677766666553
|
| >1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.095 Score=41.71 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=35.6
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.++.|.||+.|-.- ....|+..|+...+|++.||+.||+++
T Consensus 5 ~~~~i~~F~~iTg~---~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGA---EEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCC---CHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCc---CHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999998753 478999999999999999999999864
|
| >1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=92.13 E-value=0.18 Score=44.63 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=39.3
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGD 635 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1176)
+.|.+.|.|+++| |= +-|..++..|.++.|||++|++..|+.+.-+
T Consensus 27 ~~ye~qi~qL~eM--GF-~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 27 GRYQQELEELKAL--GF-ANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTSHHHHHHHHHH--TC-CCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 5688899999998 43 5688999999999999999999999876544
|
| >1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.83 E-value=0.14 Score=43.11 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=37.4
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.+.|.+.|.|+.+| |= +-|..++.+|.++.||+++|++..|+.+
T Consensus 14 e~~~~~qi~~L~~M--GF-~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 14 EERYEHQLRQLNDM--GF-FDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHTHHHHHHHHHH--TC-CCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 46788899999998 43 5688889999999999999999988753
|
| >2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A | Back alignment and structure |
|---|
Probab=91.65 E-value=0.12 Score=41.47 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=35.3
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccc
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYD 630 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1176)
+.|.+.|.|+.+| |- +-|..++..|.++.||+++|++..|+
T Consensus 5 ~~~~~~i~~L~~M--GF-~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM--GF-FDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT--TC-CCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5688889999988 43 56788899999999999999998876
|
| >2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B | Back alignment and structure |
|---|
Probab=91.19 E-value=0.22 Score=40.97 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.9
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
+.|.+.|.|++.| | =+.|..++..|.+|.||+++|++..++++
T Consensus 10 ~~~~~~l~~L~~M--G-F~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 10 VRFQQQLEQLSAM--G-FLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp TTTHHHHHHHHHT--T-CCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHc--C-CCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 5678889999988 3 36799999999999999999999988753
|
| >2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.22 Score=41.12 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=37.1
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.+.|.+.|.|++.| | =+.|..++..|.+|.||+++|++..++.+
T Consensus 8 e~~~~~~l~~L~~M--G-F~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSM--G-FINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTT--T-CCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHc--C-CCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45688888888888 3 35799999999999999999999988753
|
| >2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.21 Score=43.24 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=34.6
Q ss_pred HhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 591 EEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
+.|.||+.|-.- ..+.|+..|+.+.+|++.||+.||.++.
T Consensus 19 ~~i~qF~~iTg~---~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGC---AADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCC---CHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 579999998643 4667999999999999999999998654
|
| >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=87.79 E-value=0.78 Score=40.42 Aligned_cols=47 Identities=11% Similarity=0.264 Sum_probs=39.2
Q ss_pred hhhhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 584 NAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
...+.+++.|.||+.| | -.|+.|+..|.++.||+++|++..+++..-
T Consensus 24 ~~~~~~ee~I~~L~eM--G--F~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM--G--FDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCSCCCHHHHHHHHTT--T--CCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cCCcccHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 3455567789999988 4 589999999999999999999999986553
|
| >2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.4 Score=41.56 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=37.1
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.|.||+.|-.. .....|+.+|+...+|++.||+.||++.++
T Consensus 18 ~~e~i~qF~~ITg~--~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGI--ESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCC--SCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45679999999862 246789999999999999999999997653
|
| >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=87.20 E-value=0.39 Score=36.80 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=32.2
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccc
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYY 629 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1176)
.+++.|.||+.| |- ++..|+..|..+.||+++|++..|
T Consensus 3 ~~~~~i~~L~~m--Gf--~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM--GF--DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT--TC--CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc--CC--CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 356789999998 54 689999999999999999998654
|
| >2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=85.08 E-value=0.97 Score=39.09 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=38.3
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCC
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGD 635 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1176)
.+.|.++|.|+..|= =+-+...+..|.+|.|||++|++.-|+.++..
T Consensus 16 e~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 16 EVRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 456788888888773 24567779999999999999999999987754
|
| >4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=2.2 Score=46.16 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhc-------------chhhHHHHHHHHhhcc-----ccCcchhh
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSC-------------REKEMKFLVRTLVRNL-----RIGAMMRT 884 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~-------------~~~E~k~LvRiIlk~L-----RiG~~~~t 884 (1176)
.++...++-+.+++|.+.++ ..+|.++|.++++.. .+...-.++|+|+=+. -.|+++++
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~---rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~ 88 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKG---RAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETM 88 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSS---HHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHH
T ss_pred cCCcHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHH
Confidence 45778899999999987654 678899999999985 2456677789888543 28999999
Q ss_pred HHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 885 ILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 885 vl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
+.++++++++.+.... --..|..|.. -...|....|++.++..++.
T Consensus 89 L~Kai~~~~g~~~~~~---------~~~~L~~wk~-~~~~~~~~GDlg~va~~~~~ 134 (240)
T 4htp_A 89 LAKLYIELLNLPRDGK---------DALKLLNYRT-PTGTHGDAGDFAMIAYFVLK 134 (240)
T ss_dssp HHHHHHHHTTCCTTSH---------HHHHHHTC-----------CCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcchH---------HHHHHHhccc-cccccccCCCHHHHHHHHHH
Confidence 9999999998875210 0012222211 11456678999999988764
|
| >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=83.04 E-value=1.1 Score=39.56 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=38.4
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDR 636 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1176)
+..++.|.|++.| | =.|..|...|..|.||+++|++..+++++...
T Consensus 27 ~~~~~~v~~L~~M--G--F~~~~a~~AL~~t~~nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 27 DIDQSSVDTLLSF--G--FAEDVARKALKASGGDIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SSCHHHHHHHHHH--T--CCHHHHHHHHHHTTSCHHHHHHHHHHSCCSSC
T ss_pred CCCHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 3456778999988 3 47899999999999999999999999876543
|
| >1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=80.99 E-value=1.6 Score=39.39 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=37.1
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.|+||+.| | -.|..|+.+|.+|.||+++|++..|+++..
T Consensus 29 ~ee~I~~Lv~M--G--F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYM--G--FDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHH--S--CCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 57789999999 3 589999999999999999999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1176 | ||||
| d1x9na1 | 272 | a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( | 2e-68 | |
| d1x9na3 | 220 | d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( | 6e-44 | |
| d1a0ia2 | 239 | d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te | 7e-26 | |
| d1fvia2 | 188 | d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te | 8e-19 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 6e-13 | |
| d1p16a2 | 245 | d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu | 1e-10 | |
| d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 | 3e-09 | |
| d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation prot | 7e-09 | |
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 2e-06 | |
| d1s68a_ | 233 | d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba | 0.001 | |
| d1ckma2 | 228 | d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA | 0.004 |
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ATP-dependent DNA ligase DNA-binding domain superfamily: ATP-dependent DNA ligase DNA-binding domain family: ATP-dependent DNA ligase DNA-binding domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 228 bits (583), Expect = 2e-68
Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 13/264 (4%)
Query: 688 DPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLA 747
+P Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++A
Sbjct: 6 NPAK-----NNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVA 60
Query: 748 LSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGD 807
LSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 61 LSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGL 120
Query: 808 VAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867
VA+ R TQ L+ PPPPL V+S I+ TGS STA+K +I L +CR E +F
Sbjct: 121 VAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARF 180
Query: 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNSS--------LEFSHEGKMENLKEKLQSLSA 919
+ R+L LR+G +++L AL+QAV + ++ E K L+
Sbjct: 181 IARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGM 240
Query: 920 AAVEAYNILPSLDLLIPSLMNKGI 943
+ + +P LD +IP L+ G+
Sbjct: 241 ILKQTFCEVPDLDRIIPVLLEHGL 264
|
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (396), Expect = 6e-44
Identities = 97/223 (43%), Positives = 142/223 (63%), Gaps = 16/223 (7%)
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
PG+P+KPMLA T G+ +VLK F+ AFTCEYKYDGQRAQIH L G V+IFSRN ++ T
Sbjct: 3 PGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNT 62
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
++PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R +
Sbjct: 63 GKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKR----KEVDASE 117
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
++V +C++ FD+++ NGE L+ L +RR+ L++ F E G F +A + + +
Sbjct: 118 IQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFV-ETEGEFVFATSLDTKDIEQ--- 173
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 174 -------IAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 209
|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: ATP-dependent DNA ligase, N-terminal domain species: Bacteriophage T7 [TaxId: 10760]
Score = 105 bits (262), Expect = 7e-26
Identities = 37/245 (15%), Positives = 72/245 (29%), Gaps = 40/245 (16%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT--- 1013
P K + + + + + L E KYDG R I SR
Sbjct: 7 PFKAVSF-VESAIKKALDNAGY--LIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALE 63
Query: 1014 ---SRFPDLISIINEFCKPAAGTFILDAEVVAID--------------RKNGCKIMSFQE 1056
++N+ F+LD E++ + +
Sbjct: 64 HLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEEL 123
Query: 1057 LSSRERGGKDSVITIKSVKVDICVFVFDIM--FANGE--QLLGYTLRQRRKYLKDLFYDE 1112
R + + + I ++ + +GE ++ +++ K + L +
Sbjct: 124 FVEPIRKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEY 183
Query: 1113 -KMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171
+Q A+ V + ++ E+ EG+IVK D Y K
Sbjct: 184 FPEIEWQAAESYEVY----------DMVELQQLYEQKRAEGHEGLIVK--DPMCIYKRGK 231
Query: 1172 RSDSW 1176
+S W
Sbjct: 232 KSGWW 236
|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: ATP-dependent DNA ligase, N-terminal domain species: Chlorella virus PBCV-1 [TaxId: 10506]
Score = 83.4 bits (205), Expect = 8e-19
Identities = 23/217 (10%), Positives = 59/217 (27%), Gaps = 41/217 (18%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFP 1017
KP+LA + V K G R+ ++ SR +
Sbjct: 3 TKPLLAATLENIEDV-----QFPCLATPKIAGIRSVKQ------TQMLSRTFKPIRNSVM 51
Query: 1018 DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVD 1077
+ + D E+ + S +
Sbjct: 52 NRLLTELLPE-------GSDGEISI-EGATFQDTTSAVMTGHKMY------------NAK 91
Query: 1078 ICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVS 1137
+ FD + + + + + Y+ + + + + VE ++
Sbjct: 92 FSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINN-------- 143
Query: 1138 LSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSD 1174
++++ + + L EG++++ D Y + +
Sbjct: 144 ITELLQYERDVLSKGFEGVMIR--KPDGKYKFGRSTL 178
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage and polyadenylation specificity factor subunit 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 6e-13
Identities = 53/380 (13%), Positives = 113/380 (29%), Gaps = 88/380 (23%)
Query: 65 FLSHFHSDHYTGL----SPSWSKGIIFCSEITSRLLSQIL-------------------- 100
+SHFH DH L + KG F + T + +L
Sbjct: 60 LISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETD 119
Query: 101 -NINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159
+ I + + G + A H GA F+ ++ + ++TGDF
Sbjct: 120 LEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEI-----AGVKLLYTGDFSR 174
Query: 160 CKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKR 219
+ L D + +++TY + +EE N V+ + +
Sbjct: 175 QEDRHLMAAEIPNIKPDILIIESTYGTH--IHEKREEREARFCNTVHDI----VNRGGRG 228
Query: 220 VLFLVATYVIGKEKILIEIFKKCGRKV----CVDSRKMEVLRVLGYGDSGVFTEDESETD 275
++ + A + ++++ + + ++ + + + Y D+
Sbjct: 229 LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 288
Query: 276 VH----------VVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDA-------- 317
++ + + VV P + R F D
Sbjct: 289 ININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 348
Query: 318 -----------------------------FEIHLVPYSEHSNYDELREYVKFLKPKRVIP 348
+ + +S H++Y + E+++ LKP VI
Sbjct: 349 YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVIL 408
Query: 349 TVGMDIEKLDSKHANKMRKY 368
G + ++ A +R+Y
Sbjct: 409 VHG-EQNEMARLKAALIREY 427
|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: mRNA capping enzyme domain: mRNA capping enzyme alpha subunit species: Yeast (Candida albicans) [TaxId: 5476]
Score = 61.0 bits (147), Expect = 1e-10
Identities = 34/262 (12%), Positives = 80/262 (30%), Gaps = 66/262 (25%)
Query: 950 LSMVPGVPIKPMLAKITNG-VPQVL---------------------KLFQNKAFTCEYKY 987
+ ++PG + K V ++L + K + K
Sbjct: 9 IPVIPGNKLDEEETKELRLMVAELLGRRNTGFPGSQPVSFERRHLEETLMQKDYFVCEKT 68
Query: 988 DGQRAQIHKLVD----GTVRIFSRNGDE---TTSRFPDLISIINEFCKPAAGTFILDAEV 1040
DG R + + D V + +R D FP ++ E GT +LD E+
Sbjct: 69 DGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGT-LLDGEL 127
Query: 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQ 1100
V +R ++ + +FD + +G+ ++ L +
Sbjct: 128 VLENRNVSEPVLRY--------------------------VIFDALAIHGKCIIDRPLPK 161
Query: 1101 RRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT------SDVSLSKINNFLEEALHSSCE 1154
R Y+ + + ++ ++ + + + + +++ H + +
Sbjct: 162 RLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFKTMLTSYHADDVLSKMDKLFH-ASD 220
Query: 1155 GIIVKSLDVDAGYSPSKRSDSW 1176
G+I + Y +
Sbjct: 221 GLIYT--CAETPYVF-GTDQTL 239
|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Hypothetical protein EF2904 species: Enterococcus faecalis [TaxId: 1351]
Score = 55.4 bits (132), Expect = 3e-09
Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 11/133 (8%)
Query: 65 FLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIY------PLPIKIPVLI 118
FLSH H DH ++ ++ + T +L+ + I ++ L
Sbjct: 34 FLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLN 93
Query: 119 DGCEVVLVG---ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC--KTMLLQPVMNEFA 173
+ + + +TGD R +
Sbjct: 94 KNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAK 153
Query: 174 GCDAVFLDTTYCN 186
+ + ++ +
Sbjct: 154 HTELLMMEGVSIS 166
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Putative RNA-degradation protein TTHA0252 species: Thermus thermophilus [TaxId: 274]
Score = 57.3 bits (137), Expect = 7e-09
Identities = 71/415 (17%), Positives = 119/415 (28%), Gaps = 109/415 (26%)
Query: 43 HVPNTRFLIDA--------FRYAADFSVSY------FLSHFHSDHYTGLSPSWSKGI--- 85
R L+D R A F L+H H DH L + +G
Sbjct: 20 LAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGP 79
Query: 86 IFCSEITSRLLSQILNINP-----------------KFIYPLPIKIPVLIDGCEVVLVGA 128
++ + T L+ +L + PL + + + A
Sbjct: 80 VYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQA 139
Query: 129 NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPK 188
H PG+ + + GR V++GD + +L P + D V + TY +
Sbjct: 140 GHLPGSAFVVAQGEGR-----TLVYSGDLGNREKDVL-PDPSLPPLADLVLAEGTYGDRP 193
Query: 189 FLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILI---EIFKKCGRK 245
E V + + L++G +VL +E + + +
Sbjct: 194 H-----RPYRETVREFLEILEKTLSQG--GKVLIPTFAVERAQEILYVLYTHGHRLPRAP 246
Query: 246 VCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWNE---------------------- 283
+ +DS RVL V E + G N
Sbjct: 247 IYLDSPMAG--RVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAP 304
Query: 284 ------------------------IMVERGYDKVVGFVPTGWT-YEVKRNKFAVRSKDAF 318
+ R VG+ P G E+ AVR
Sbjct: 305 GPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEE 364
Query: 319 -----EIH-LVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRK 367
+H L +S H+ DEL ++++ RV+ G + EKL +
Sbjct: 365 VPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVLVHG-EEEKLL-ALGKLLAL 415
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.4 bits (117), Expect = 2e-06
Identities = 22/235 (9%), Positives = 53/235 (22%), Gaps = 59/235 (25%)
Query: 65 FLSHFHSDHYTGL--------SPSWSKGIIFCSEITSRLLSQIL-------NINPKFIYP 109
LS + S S+ ++ + L + +
Sbjct: 58 ILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTN 117
Query: 110 L--------------------PIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFE 149
+ + DG ++ A CPG + E
Sbjct: 118 KLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYS-----E 172
Query: 150 RYVHTGDFRFCKTMLLQP---------VMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEY 200
+ V+ + + +L ++ A+ F + + +
Sbjct: 173 KLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKD 232
Query: 201 VVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEV 255
+ G V ++ + GK L + + + +V
Sbjct: 233 TLKKGLSSDG--------SV--IIPVDMSGKFLDLFTQVHELLFESTKINAHTQV 277
|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: RNA ligase domain: RNA ligase 2, N-terminal domain species: Bacteriophage T4 [TaxId: 10665]
Score = 39.8 bits (92), Expect = 0.001
Identities = 20/208 (9%), Positives = 45/208 (21%), Gaps = 16/208 (7%)
Query: 976 FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFI 1035
+ K G + V R G + II + +
Sbjct: 25 LTGGEWVAREKIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQ 83
Query: 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSV----ITIKSVKVDICVFVFDIMFANGE 1091
E A+ + + I + + D+ +M +
Sbjct: 84 DIMETSAVVSYQVFGEFAGPGIQKNVDYCDKDFYVFDIIVTTESGDVTYVDDYMMESFCN 143
Query: 1092 Q--LLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEA 1148
L R K+ + + + Q V + +
Sbjct: 144 TFKFKMAPLLGRGKFEELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNA-----EAKG 198
Query: 1149 LHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ EG ++K + + +
Sbjct: 199 EVFTAEGYVLK--PCYPSWLRN-GNRVA 223
|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: mRNA capping enzyme domain: RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain species: Chlorella virus PBCV-1 [TaxId: 10506]
Score = 37.8 bits (87), Expect = 0.004
Identities = 26/206 (12%), Positives = 55/206 (26%), Gaps = 43/206 (20%)
Query: 973 LKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG 1032
+ + + K DG R + F+R
Sbjct: 59 FEKLKQNKYVVSEKTDGIRFMMF---------FTRVFGFKVCTI---------------- 93
Query: 1033 TFILDAEVVAIDRKNGCKIMSFQELSSRERGGK--DSVITIKSVKVDICVFVFDIMFANG 1090
IDR ++ F+ + G D + + V+ +FD + +G
Sbjct: 94 ----------IDRAMTVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSG 143
Query: 1091 EQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH 1150
+ L R +K + K A E + + ++ +
Sbjct: 144 VTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTII----KDHLKKANAI 199
Query: 1151 SSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+G+I+ VD + + +
Sbjct: 200 YHTDGLIIM--SVDEPVIYGRNFNLF 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1176 | |||
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1x9na3 | 220 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 99.98 | |
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 99.97 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 99.97 | |
| d1a0ia2 | 239 | ATP-dependent DNA ligase, N-terminal domain {Bacte | 99.96 | |
| d1fvia2 | 188 | ATP-dependent DNA ligase, N-terminal domain {Chlor | 99.94 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.81 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.8 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 99.69 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 99.66 | |
| d1p16a2 | 245 | mRNA capping enzyme alpha subunit {Yeast (Candida | 99.65 | |
| d1ckma2 | 228 | RNA guanylyltransferase (mRNA capping enzyme), N-t | 99.63 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 99.33 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 99.31 | |
| d1s68a_ | 233 | RNA ligase 2, N-terminal domain {Bacteriophage T4 | 99.13 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 98.88 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 98.85 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 98.84 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 98.74 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 98.71 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 98.68 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 98.65 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 98.61 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.6 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 98.57 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 98.57 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.57 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 98.53 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 98.51 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 98.48 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.46 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 98.36 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 98.31 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 98.26 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 98.21 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 98.03 | |
| d1b04a_ | 312 | Adenylation domain of NAD+-dependent DNA ligase {B | 97.06 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 97.05 | |
| d1ta8a_ | 313 | Adenylation domain of NAD+-dependent DNA ligase {E | 97.01 | |
| d1dgsa3 | 314 | Adenylation domain of NAD+-dependent DNA ligase {T | 96.52 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 95.7 | |
| d1xdna_ | 265 | RNA editing ligase MP52 {Trypanosoma brucei [TaxId | 95.38 | |
| d1v92a_ | 46 | NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { | 94.06 | |
| d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Ar | 84.03 |
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ATP-dependent DNA ligase DNA-binding domain superfamily: ATP-dependent DNA ligase DNA-binding domain family: ATP-dependent DNA ligase DNA-binding domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-48 Score=427.07 Aligned_cols=256 Identities=34% Similarity=0.611 Sum_probs=232.1
Q ss_pred CCCCCcccccccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccccccc
Q 001045 696 PEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNI 775 (1176)
Q Consensus 696 ~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgi 775 (1176)
...|+|+.++||.+|+++||.+||++|++|++|++|++|+++|++||++++..+|+|+.+++||++|+++|+|++++|||
T Consensus 9 ~~~~~p~~~~~w~~~~~vpf~~la~~f~~ie~ts~rl~k~~iL~~~f~~~~~~~p~dl~~~vyL~~g~l~P~~e~~elgi 88 (272)
T d1x9na1 9 KNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGV 88 (272)
T ss_dssp CSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCC
T ss_pred cccCCcchhhcccCCCCcCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhCCcCcchhchhccc
Confidence 56799999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred chhhHHHHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 001045 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVN 855 (1176)
Q Consensus 776 ge~~L~kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~ 855 (1176)
|+++|.|++++++|++.+.+++.|++.||+|++|+.+++++.+++.|++|||.+|++.|++||..+|++|+.+|.++|.+
T Consensus 89 ge~~l~kai~e~~G~~~~~i~~~~~~~GDlG~va~~~~~~~~~~~~~~~LTv~~V~~~L~~IA~~sG~~s~~~K~~~i~~ 168 (272)
T d1x9na1 89 GDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKG 168 (272)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCcCHHHHHHHHHHcCCHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCccccc--------ccccchhHHHHHHHHHHHHHHHHHhh
Q 001045 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEF--------SHEGKMENLKEKLQSLSAAAVEAYNI 927 (1176)
Q Consensus 856 Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~v~~ay~~ 927 (1176)
||.+|++.|+|||+|+|+|+||||+++++|+.|||+||.++..... ......+.+++.+++....++++|++
T Consensus 169 Ll~~~~~~E~kyliR~l~g~LRIGv~e~tvl~ALa~Af~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vk~ay~~ 248 (272)
T d1x9na1 169 LFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCE 248 (272)
T ss_dssp HHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhcCcccccccchhhhhhhccchhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998764332 11223456688888888899999999
Q ss_pred CCChHHHHHHHhccccCCCccccC
Q 001045 928 LPSLDLLIPSLMNKGIGFSASTLS 951 (1176)
Q Consensus 928 ~pdl~~v~~~L~~~g~~~~~~~~~ 951 (1176)
||||+.|++.|+++|++.+...|+
T Consensus 249 ~P~~~~iv~~ll~~gi~~l~~~ck 272 (272)
T d1x9na1 249 VPDLDRIIPVLLEHGLERLPEHCK 272 (272)
T ss_dssp SCCHHHHHHHHHHHHHHHTGGGCC
T ss_pred CCCHHHHHHHHHHhCHHHHHhhcC
Confidence 999999999999999987777663
|
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-43 Score=376.53 Aligned_cols=209 Identities=47% Similarity=0.861 Sum_probs=187.0
Q ss_pred cCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCC
Q 001045 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 952 l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
|+||+|++||||++++++++.++++.+.+|++|+||||+|||||+..+|+|++|||+|+++|..||+|...+...+.+..
T Consensus 1 ~~pg~P~~PMLA~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~i~~~~~~~v~l~SR~g~~~t~~~p~l~~~~~~~~~~~~ 80 (220)
T d1x9na3 1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV 80 (220)
T ss_dssp CCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTC
T ss_pred CCCCCCCCCeeCCCCCChHHHHhhcCCCcEEEEEeECcEEEEEEEECCCEEEEEeCCCccccccchhHHHHHHHhhcCCC
Confidence 68999999999999999999999999999999999999999999877889999999999999999999999988877778
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
.+||||||||+||... ..+.+|+.++.+.++... ......+++|+|||||++||++++++||.+|+++|++++ .
T Consensus 81 ~~~iLDGEl~~~d~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vFDil~~~g~~~~~~p~~eR~~~L~~~~-~ 154 (220)
T d1x9na3 81 TSFILDTEAVAWDREK-KQIQPFQVLTTRKRKEVD----ASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENF-V 154 (220)
T ss_dssp CCEEEEEEEEEECTTT-CSBCCHHHHTTSCSSCCC----GGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHB-C
T ss_pred cceeeeeeeEEecCCC-CccchHHHHhhhhhcccc----hhhhccccceEEEEEEEECCcchhhhhHHHHHHHHHHHh-c
Confidence 8999999999999875 477889999887665432 234467899999999999999999999999999999999 6
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+.++.+.++++..+ ++.+++.++|+++++.|+||||+|..+.+|+|+||+||.+|
T Consensus 155 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGim~K~~~~~s~Y~~GkRs~~w 209 (220)
T d1x9na3 155 ETEGEFVFATSLDT----------KDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 209 (220)
T ss_dssp CBTTTEEECCEECC----------CCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEE
T ss_pred cCCCeEEEEEeecc----------CCHHHHHHHHHHHHHCCCceEEEeccCCCCCeecCCcCCCe
Confidence 66788888887653 57899999999999999999999976556999999999988
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.7e-32 Score=327.73 Aligned_cols=203 Identities=14% Similarity=0.054 Sum_probs=161.4
Q ss_pred CCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCC--------CCceEEeCHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSW--------SKGIIFCSEIT 92 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~--------~~~pIY~s~~T 92 (1176)
..+|+.+ +.+..+|+|||-.. .++|++|||||+|.||+|+||+++ .++|||||+.|
T Consensus 14 ~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T 93 (514)
T d2i7xa1 14 TTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPV 93 (514)
T ss_dssp SCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHH
T ss_pred eeeEEEEEECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHH
Confidence 3478888 89999999998211 257999999999999999999875 26899999999
Q ss_pred HHHHHHhhc-----------cC-C-----------CceEEeCCCceEEEC----CEEEEEEecCCCcCceEEEEEEcCCC
Q 001045 93 SRLLSQILN-----------IN-P-----------KFIYPLPIKIPVLID----GCEVVLVGANHCPGAVQFLFKVPGRN 145 (1176)
Q Consensus 93 ~~ll~~~l~-----------~~-~-----------~~i~~l~~~~~~~i~----~~~Vt~~~a~H~pGS~~flie~~~~~ 145 (1176)
+++++..+. .. + ..+.++++++++.++ +++++++++||+|||+++.|++++
T Consensus 94 ~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa~~~I~~~~-- 171 (514)
T d2i7xa1 94 INLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYS-- 171 (514)
T ss_dssp HHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECSS--
T ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCceEEEEEECC--
Confidence 999875430 00 0 236789999999996 699999999999999999999865
Q ss_pred CcccEEEEECCCCCcccccchhh-hh-------ccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCC
Q 001045 146 GGFERYVHTGDFRFCKTMLLQPV-MN-------EFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQ 217 (1176)
Q Consensus 146 G~~~~IlYTGDfr~~~~~~~~~~-l~-------~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~ 217 (1176)
++|+|||||+.....+..+. +. .....|.+++++||+.. .++++.+..+.+.+.+.+++.+ +
T Consensus 172 ---~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~--~~~~~~~~~~~l~~~i~~~~~~-----g 241 (514)
T d2i7xa1 172 ---EKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFG--SSQPFKKRSKIFKDTLKKGLSS-----D 241 (514)
T ss_dssp ---CEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCC--CSSCHHHHHHHHHHHHHHHTST-----T
T ss_pred ---eEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEEcCCCCC--CCCChHHHHHHHHHHHHHHHhC-----C
Confidence 69999999999877654322 11 11345667777777763 4677888889999999999776 7
Q ss_pred CeEEEEEeccccchHHHHHHHHHHc-----------CCcEEEccchH
Q 001045 218 KRVLFLVATYVIGKEKILIEIFKKC-----------GRKVCVDSRKM 253 (1176)
Q Consensus 218 g~vlvli~~~slGR~q~ll~ia~~~-----------g~~I~vdg~~~ 253 (1176)
|+ |+||+|++||.|+++.++.++ ++||++++..+
T Consensus 242 G~--VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~ 286 (514)
T d2i7xa1 242 GS--VIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYAR 286 (514)
T ss_dssp CE--EEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTT
T ss_pred CE--EEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHH
Confidence 88 799999999999999988764 46999987543
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Putative RNA-degradation protein TTHA0252 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3.7e-31 Score=310.64 Aligned_cols=309 Identities=18% Similarity=0.216 Sum_probs=216.1
Q ss_pred CCCCeeE-eCCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~ 98 (1176)
+.+|+.+ ..+..++||||- ....+|++|||||+|.||+||||.++ .+.|||+++.|..++..
T Consensus 13 g~sc~lv~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~id~I~iTH~H~DHigglp~l~~~~~~~~i~~~~~t~~~~~~ 92 (431)
T d2dkfa1 13 TGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEI 92 (431)
T ss_dssp SCCEEEEEETTEEEEEEECCCCGGGTTTTTSCCSSCGGGCCEEECCSCCSTTTTTHHHHHHTTCCSCEEECHHHHHHHHH
T ss_pred cccEEEEEECCcEEEEECCCCCCcccccchhhcCCChhhCCEEEECCCChHHHCchHHHHhcCCCCcEEcCHHHHHHHHH
Confidence 3468888 899999999971 11257999999999999999999864 47899999999999887
Q ss_pred hhc------cC-----------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 99 ILN------IN-----------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 99 ~l~------~~-----------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.+. .. ...+.++.+++++.+++++|++++++|+||+++|.|++++ ++|+|||||+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~gH~~g~~~~~i~~~~-----~~i~ytgD~~~~~ 167 (431)
T d2dkfa1 93 VLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEG-----RTLVYSGDLGNRE 167 (431)
T ss_dssp HHHHHHHHCSSCSSCHHHHHHHHTTEEECCSSCCEESSSCEEEEEECCSSTTCEEEEEEETT-----EEEEECCSCCCTT
T ss_pred HhhhhhhccccccCCHHHHHHHHhhcccccCCCeEEECCEEEEEEecCCCCccEEEEEEECC-----eeeeecCCcCcCC
Confidence 652 01 0236788899999999999999999999999999999864 7999999999887
Q ss_pred cccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHH
Q 001045 162 TMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKK 241 (1176)
Q Consensus 162 ~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~ 241 (1176)
........ ....+|+|++|+||+++. ++.+...+..+.+.+.+++.+ +++ |++|+|++||.|+++.++.+
T Consensus 168 ~~~l~~~~-~~~~~d~li~e~t~~~~~--~~~~~~~~~~~~~~i~~~~~~-----~g~--vli~~fa~gr~qeil~~l~~ 237 (431)
T d2dkfa1 168 KDVLPDPS-LPPLADLVLAEGTYGDRP--HRPYRETVREFLEILEKTLSQ-----GGK--VLIPTFAVERAQEILYVLYT 237 (431)
T ss_dssp SSSSCCCC-BCCCCSEEEEECTTSSCC--CCCHHHHHHHHHHHHHHHHHT-----TCE--EEEEECTTHHHHHHHHHHHT
T ss_pred CccCCCch-hhhhccccccccccCCCC--cccchHHHHHHHHHHHHHHhc-----CCe--EEEEeccchHHHHHHHHHHH
Confidence 65543321 125799999999999853 667777788888889888766 677 78999999999999999988
Q ss_pred cCC-----cEEEccchHH-HHHHh---C-CC----------CCCcccc----------------CCCCCeEEEecCh---
Q 001045 242 CGR-----KVCVDSRKME-VLRVL---G-YG----------DSGVFTE----------------DESETDVHVVGWN--- 282 (1176)
Q Consensus 242 ~g~-----~I~vdg~~~~-il~~l---g-~~----------~~~~~t~----------------d~~~~~I~v~~~~--- 282 (1176)
++. +|++++..+. ++..+ . +. ....|.. ......+.+++.+
T Consensus 238 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~~~~~~~ 317 (431)
T d2dkfa1 238 HGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLA 317 (431)
T ss_dssp TTTSSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTCCTTSCTTBCCCCSHHHHHHHHHCCSSEEEEEECTTSS
T ss_pred hccccCCccEEEechhHHHHHHHHHhhhhhcCHHHHhhhhcccCccccccccccCCHHHHHHHHhCCCCceeeccccccc
Confidence 763 7999886543 22221 1 00 0000000 0112334444333
Q ss_pred -----HHHHhcCCCceEEEEeccceeecccCc--------eee---eccCCeeEEEE-eecCCCCHHHHHHHHHHcCCCE
Q 001045 283 -----EIMVERGYDKVVGFVPTGWTYEVKRNK--------FAV---RSKDAFEIHLV-PYSEHSNYDELREYVKFLKPKR 345 (1176)
Q Consensus 283 -----~~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~v---~~~~~~~v~~i-~~SgHAs~~EL~~~V~~lrPk~ 345 (1176)
..+.....+..-.++.+||+.....++ +.. ..+..+.++.+ ++||||+++||++|++ .|++
T Consensus 318 ~~~~~~~~~~~~~~~~n~vi~tg~~~~gt~g~~l~~~~~~~~~~~~~~~~~~~v~~~~~~SgHa~~~eL~~~i~--~~~~ 395 (431)
T d2dkfa1 318 GGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPR 395 (431)
T ss_dssp SSTHHHHHHSSSSSTTCEEEESSCCCTTSTTHHHHTCCSEEEETTEEEECCSEEEECTTSCSSCCHHHHHHHHT--TCSC
T ss_pred cchHHHHHHHhccCCccceeeeeccCCCcHHHHHhccCCeEEEcCcEEEEeeEEEECCcccCCCCHHHHHHHHh--cCCe
Confidence 111111122222344588876543221 111 12233455554 5899999999999997 4667
Q ss_pred EEEEecCCCCcCchHHHHHHHHHHHH
Q 001045 346 VIPTVGMDIEKLDSKHANKMRKYFAG 371 (1176)
Q Consensus 346 VIPvHG~~~e~~~~~E~~~m~k~f~~ 371 (1176)
|||||| |+++|.++.+.
T Consensus 396 vi~vHG---------e~~~~~~~a~~ 412 (431)
T d2dkfa1 396 VVLVHG---------EEEKLLALGKL 412 (431)
T ss_dssp EEEESS---------CHHHHHHHHHH
T ss_pred EEEEcC---------CHHHHHHHHHH
Confidence 999999 67777654443
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage and polyadenylation specificity factor subunit 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-30 Score=300.78 Aligned_cols=318 Identities=19% Similarity=0.214 Sum_probs=212.7
Q ss_pred CCCCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccC----CCCceEEeCHHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEITSR 94 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T~~ 94 (1176)
+.+.+|+.+ ..+..+++|||-. ...++++|||||+|.||+||||++ +.++|||||+.|++
T Consensus 14 eIG~n~~lv~~~~~~il~D~G~~~~~~~~~~~p~~~~~~~~~id~i~lTH~H~DH~ggLp~l~~~~~~~~pIy~s~~T~~ 93 (451)
T d2i7ta1 14 EVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKA 93 (451)
T ss_dssp SSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHH
T ss_pred cccccEEEEEECCeEEEEeCCCCCCccccccCCCccCCCHhhCCEEEECCCcHHHhCchHHHHHhcCCCCCEEechhHhh
Confidence 345568888 8999999999710 114789999999999999999864 35789999999999
Q ss_pred HHHHhhccC---------------------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEE
Q 001045 95 LLSQILNIN---------------------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVH 153 (1176)
Q Consensus 95 ll~~~l~~~---------------------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlY 153 (1176)
+++..+... ...+..+.+++.+.++++.|++++++|+|||++|+|+.++ ++++|
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~Gs~~~~i~~~~-----~~i~~ 168 (451)
T d2i7ta1 94 IYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAG-----VKLLY 168 (451)
T ss_dssp HHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEEEEEETT-----EEEEE
T ss_pred hhhhhhhhhhhhhhcccccccCcHHHHHHhhhhcceecCCceEeeCCEEEEEeccCCCCCceeEEeecCC-----ceEEe
Confidence 998765210 1246788899999999999999999999999999999865 69999
Q ss_pred ECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHH
Q 001045 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEK 233 (1176)
Q Consensus 154 TGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q 233 (1176)
||||+..+............++|+|++|+|++.. .++...+....+.+.+.....+ ++. +++++++.||.+
T Consensus 169 tgD~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~--v~i~~~~~g~~~ 239 (451)
T d2i7ta1 169 TGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH--IHEKREEREARFCNTVHDIVNR-----GGR--GLIPVFALGRAQ 239 (451)
T ss_dssp CCSCCCC-----CCCCCCSSCCSEEEEECTTTTC--CCCCHHHHHHHHHHHHHHHHHT-----TCE--EEEECCSSSSHH
T ss_pred cCCCCCCCCcccccccccccccceeEeecccCcc--ccccchhHHhhhhHHHhHHHhc-----CCc--EEEEEecchHHH
Confidence 9999988765433222223688999999999884 4677778888888888777665 455 688999999999
Q ss_pred HHHHHHHHc----C----CcEEEccch-HHH---HH----HhC----------CC--------CCCccccCCCCCeEEEe
Q 001045 234 ILIEIFKKC----G----RKVCVDSRK-MEV---LR----VLG----------YG--------DSGVFTEDESETDVHVV 279 (1176)
Q Consensus 234 ~ll~ia~~~----g----~~I~vdg~~-~~i---l~----~lg----------~~--------~~~~~t~d~~~~~I~v~ 279 (1176)
+++..+.++ + ..++..... ... +. .+. .+ .....+.+.....+++.
T Consensus 240 e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 319 (451)
T d2i7ta1 240 ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMA 319 (451)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCTTSSCCCSSEEEEE
T ss_pred HHHHHHHHHhhccccccceeeeehhHHHHHHHHHHHhhhhhhCHHHHHHhhccCcccccceeeeeeeccccccCceEEEe
Confidence 877665532 2 233332211 111 11 110 00 00111122223446666
Q ss_pred cChH--------HH--HhcCCCceEEEEeccceeecc------cCceee------eccCCeeEEEEeecCCCCHHHHHHH
Q 001045 280 GWNE--------IM--VERGYDKVVGFVPTGWTYEVK------RNKFAV------RSKDAFEIHLVPYSEHSNYDELREY 337 (1176)
Q Consensus 280 ~~~~--------~~--~~~g~~~~v~i~ptGw~~~~~------~~~~~v------~~~~~~~v~~i~~SgHAs~~EL~~~ 337 (1176)
+.+. .. ........+.+ +++..... .+...+ .....++++.+||||||+++||.+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~SgHss~~eL~~~ 397 (451)
T d2i7ta1 320 SPGMMQSGLSRELFESWCTDKRNGVII--AGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 397 (451)
T ss_dssp SCTTCSSHHHHHHHHHHTTCTTCEEEE--CSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHH
T ss_pred CccccccchhhhhhhhhccCCCCEEEe--ccccccCcHHhhhhcccceeEeecCcEEeeeeEEEEEeecCCCCHHHHHHH
Confidence 5441 11 11222333433 33322111 001111 1223456788999999999999999
Q ss_pred HHHcCCCEEEEEecCCCCcCchHHHHHHHHHHHHHHHHhh
Q 001045 338 VKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMA 377 (1176)
Q Consensus 338 V~~lrPk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~~~~~ 377 (1176)
|+.++|++|||||| |.+.|.++-+.+.++..
T Consensus 398 i~~i~Pk~vipvHG---------e~~~~~~~~~~l~~~~~ 428 (451)
T d2i7ta1 398 IRALKPPHVILVHG---------EQNEMARLKAALIREYE 428 (451)
T ss_dssp HHHHCCSEEEEESS---------CHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCEEEEEcC---------CHHHHHHHHHHHHHhhc
Confidence 99999999999999 67888887777777643
|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: ATP-dependent DNA ligase, N-terminal domain species: Bacteriophage T7 [TaxId: 10760]
Probab=99.96 E-value=8.8e-30 Score=275.70 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=147.5
Q ss_pred CCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC------CchhHHHHHHhhcCC
Q 001045 956 VPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS------RFPDLISIINEFCKP 1029 (1176)
Q Consensus 956 ~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~------~ypdl~~~l~~~~~~ 1029 (1176)
.|++||.... ..+..+++.. ..|++|+||||+|||+|+++++.+.+|||+|+++|. .++.+.+.+...+..
T Consensus 6 ~p~~~~~~~e-~~~~~~~~~~--~~~~~E~K~DG~R~~~~~~~~~~~~~~SR~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (239)
T d1a0ia2 6 NPFKAVSFVE-SAIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLLNDDRCF 82 (239)
T ss_dssp CCEEEEECCH-HHHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHHHSTTCC
T ss_pred CCccCcCccH-hHHHHhhccC--CCEEEEEeeceEEEEEEEECCeEEEEEecCCCcccchhhhhhhhhhHHHHHHHHhhc
Confidence 5788876532 2344444443 368999999999999999766789999999999864 345666666766556
Q ss_pred CCCCeEEEEEEEEEecC--------------CCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCC-----
Q 001045 1030 AAGTFILDAEVVAIDRK--------------NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANG----- 1090 (1176)
Q Consensus 1030 ~~~~~ILDGElVa~d~~--------------~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG----- 1090 (1176)
.+++||||||||+|+.. ..+...+|+.++.|.++.... .......+++|++||+|++++
T Consensus 83 ~~~~~vLDGEl~~~~~~f~~~~~~v~~~~~~~~~~~~~f~~l~~r~~~~~~~--~~~~~~~~l~~~vfD~l~l~~~~~~~ 160 (239)
T d1a0ia2 83 YKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKV--PFKLHTGHLHIKLYAILPLHIVESGE 160 (239)
T ss_dssp CTTEEEEEEEEEESSSCTTTHHHHHHCCSCCSSBSSCC--------CCCSCC--CCCBCTTTEEEEEEEEEEHHHHHHCC
T ss_pred CCcceEEeeeEeeccCCcccchhhhhhcccccccccCCHHHHHhhhccCccc--hhhhhcccceEEEEEEeecccccccc
Confidence 67899999999997532 113568999999997654332 223345789999999999874
Q ss_pred -cccccCCHHHHHHHHHHhhccc-CCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcc
Q 001045 1091 -EQLLGYTLRQRRKYLKDLFYDE-KMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYS 1168 (1176)
Q Consensus 1091 -~~Ll~~Pl~eRr~lL~~~~~~~-~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~ 1168 (1176)
..++..|+++|++.|...+... .+..+.++++..+ ++.++++++|+++++.|+||||+|+++ |+|+
T Consensus 161 ~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~el~~~~~~~~~~g~EGlmiK~~~--s~Y~ 228 (239)
T d1a0ia2 161 DCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEV----------YDMVELQQLYEQKRAEGHEGLIVKDPM--CIYK 228 (239)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEE----------SSHHHHHHHHHHHHTTTCCCEEEECTT--CEEC
T ss_pred chhhccccHHHHHHHHHHHHhhcCCCccEEEeeeEec----------CCHHHHHHHHHHHHHCCCcEEEEeCCC--CccC
Confidence 4578889999999988887322 3456888888765 478999999999999999999999987 9999
Q ss_pred cCCCCCCC
Q 001045 1169 PSKRSDSW 1176 (1176)
Q Consensus 1169 pGkRs~~W 1176 (1176)
||+|+ +|
T Consensus 229 ~GR~~-~w 235 (239)
T d1a0ia2 229 RGKKS-GW 235 (239)
T ss_dssp SEEEE-EE
T ss_pred CCCCC-Cc
Confidence 99665 45
|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: ATP-dependent DNA ligase, N-terminal domain species: Chlorella virus PBCV-1 [TaxId: 10506]
Probab=99.94 E-value=3.1e-27 Score=246.83 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=130.3
Q ss_pred ccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEE
Q 001045 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILD 1037 (1176)
Q Consensus 958 i~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILD 1037 (1176)
++||||+++++++++ ..+|++|+||||+|||.|+ ++|||+|+++|..||.... .. ...++||
T Consensus 3 ~~PMLA~~~~~~~~~-----~~p~~~e~K~DG~R~~~~~------~l~SR~g~~~~~~~~~~~~--~~-----~~~~~lD 64 (188)
T d1fvia2 3 TKPLLAATLENIEDV-----QFPCLATPKIAGIRSVKQT------QMLSRTFKPIRNSVMNRLL--TE-----LLPEGSD 64 (188)
T ss_dssp SSCCBCEECCCGGGC-----CSSEEEEECCCSEEEEESS------SEECTTSCBCSCHHHHHHH--HH-----HSCTTEE
T ss_pred CCcccCCcCCChhhc-----CCcEEEEeccccEeEEeEE------EEEecCCCccCCcChHHHH--hh-----Ccccccc
Confidence 589999999988764 3468999999999999764 5999999999999876432 22 2367899
Q ss_pred EEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc----C
Q 001045 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE----K 1113 (1176)
Q Consensus 1038 GElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~----~ 1113 (1176)
||+++++ .+|+.++.+.++.... ...+++|++||+++.++ ..||.+|+..|++++... .
T Consensus 65 GEl~~~~-------~~~~~~~~~~~~~~~~------~~~~~~~~vfD~~~~~~----~~~~~~r~~~l~~~l~~~~~~~~ 127 (188)
T d1fvia2 65 GEISIEG-------ATFQDTTSAVMTGHKM------YNAKFSYYWFDYVTDDP----LKKYIDRVEDMKNYITVHPHILE 127 (188)
T ss_dssp EEEECTT-------SCHHHHHHHHHSCC----------CCEEEEEEEECSSCT----TSCHHHHHHHHHHHHHHCGGGGG
T ss_pred ceeeccC-------CchhhhHHHHhhcccc------cccccEEEEEEEecCcc----cccHHHHHHHHHHHHHhcccccc
Confidence 9999864 3899999887654322 34569999999998775 679999999999987321 1
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSD 1174 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~ 1174 (1176)
...+.++....+ ...+.+++.+++++++++|+||||+|+++ |+|++|+||.
T Consensus 128 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~G~EGlmiK~~d--s~Y~~gr~s~ 178 (188)
T d1fvia2 128 HAQVKIIPLIPV--------EINNITELLQYERDVLSKGFEGVMIRKPD--GKYKFGRSTL 178 (188)
T ss_dssp CSSEEEEECCCE--------EECSHHHHHHHHHHHHHTTCCSEEEECTT--CCCCSSBCCT
T ss_pred cCceEEEeeeeE--------ecCCHHHHHHHHHHHHHCCCcEEEEECCC--CccCCCCcCC
Confidence 122333332111 13578999999999999999999999987 9999998764
|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: YhfI-like domain: Hypothetical protein BA1088 (BAS1016) species: Bacillus anthracis [TaxId: 1392]
Probab=99.81 E-value=8.3e-20 Score=196.40 Aligned_cols=213 Identities=12% Similarity=0.061 Sum_probs=159.3
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCC--------c-CCCCccEEEeccCChhhhCCcccCC----------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFR--------Y-AADFSVSYFLSHFHSDHYTGLSPSW---------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~--------~-~~~~i~avfITHaH~DHiggL~~l~---------- 81 (1176)
+-.||+|+++|.+.+..+|+++ ..|..+|||++. . ...+|++|||||+|.||++||+.+.
T Consensus 3 l~~LG~~~~~p~~~~~~s~~lv~~~~~~iLID~G~~~~~~l~~~~~~~~id~i~iTH~H~DH~~gl~~l~~~~~~~~~~~ 82 (244)
T d1zkpa1 3 MTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATK 82 (244)
T ss_dssp EEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTHHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCcCCCCCCcCEEEEEECCeEEEEeCCCcHHHHHHhhcCCccCceEEeecccccccCchhhhhhhheeccccc
Confidence 4568999999999999999988 899999999972 1 2367999999999999999998632
Q ss_pred ---CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 82 ---SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
...+||++..+...+............++..++.+.+++++|+++++.|...+++|+|+.++ ++++|+||.+
T Consensus 83 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~i~~~~-----~~~~~~gDt~ 157 (244)
T d1zkpa1 83 GQLPELPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGN-----DIVVYSADSS 157 (244)
T ss_dssp CCCCCEEEEECSSSHHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECCSSSCCEEEEEEETT-----EEEEECCSCC
T ss_pred CCCCCceeeechhhHhHhhhhcccccccceecccceEEEEeccceeeeeecccccccceeecccc-----cccccccccc
Confidence 25789999998887776544444457788999999999999999999998889999999864 7999999998
Q ss_pred CcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHH
Q 001045 159 FCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEI 238 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~i 238 (1176)
+.+.. ...+.++|+||+||++..........+...+++.++++++ +.+.+++++....++.+++++.
T Consensus 158 ~~~~~-----~~~~~~~D~li~e~~~~~~~~~~~~~H~~~~e~~~~~~~~--------~~k~~vl~H~~~~~~~~~~~~~ 224 (244)
T d1zkpa1 158 YIPEF-----IPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDA--------NVKELLLTHLPHTGNPADLVTE 224 (244)
T ss_dssp CCTTH-----HHHHTTCSEEEEECCBCTTSCCGGGTCCBHHHHHHHHHHT--------TCSEEEEESBCSSSCTHHHHHH
T ss_pred ccchh-----hhhhcccceeEEeecccchhhhhcccCCCHHHHHHHHHHc--------CCCEEEEECCCCCCCHHHHHHH
Confidence 76542 1122689999999998775443333345556666666665 2233344443336666777766
Q ss_pred HHH-cCCcEEE--ccch
Q 001045 239 FKK-CGRKVCV--DSRK 252 (1176)
Q Consensus 239 a~~-~g~~I~v--dg~~ 252 (1176)
+++ +...|.+ ||+.
T Consensus 225 ~~~~~~~~v~~a~dG~~ 241 (244)
T d1zkpa1 225 AKQIFSGHITLAHSGYV 241 (244)
T ss_dssp HHTTCCSEEEECCTTCE
T ss_pred HHHhcCCCEEEecCCCE
Confidence 655 4445554 6664
|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Hypothetical protein EF2904 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.80 E-value=1.7e-19 Score=186.91 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc-------------CCCceEEeCCCceEEECCEEEEE
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI-------------NPKFIYPLPIKIPVLIDGCEVVL 125 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~-------------~~~~i~~l~~~~~~~i~~~~Vt~ 125 (1176)
.+++||||||+|.||++||+.++...|||+++.|..++...... ....++.++.++++.+++++|++
T Consensus 28 ~~~~AI~iTH~H~DH~~gl~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ig~~~v~~ 107 (183)
T d2az4a1 28 YQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEI 107 (183)
T ss_dssp CSEEEEECSCSCHHHHTTGGGBCTTSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEEE
T ss_pred CceeEEEEcCCChHhhCchHHHhhcceEecCHHHHHHHHHHhhhhccccccccccccCccceEEecCCCceEECCEEEEe
Confidence 46999999999999999999999999999999999999876421 12246789999999999999999
Q ss_pred EecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccch--hhhhccCCCcEEEEeCCCCCCC
Q 001045 126 VGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQ--PVMNEFAGCDAVFLDTTYCNPK 188 (1176)
Q Consensus 126 ~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~--~~l~~~~~vDvLI~EsTy~~~~ 188 (1176)
++++| +|||++|+|+.++ ++|+||||+++++..... .......++|+||+|+|+.+..
T Consensus 108 ~~~~h~~pgs~~~~i~~~~-----~~i~ysGD~~~~g~~~~~~~~~~~~~~~~DlLI~E~T~~~~p 168 (183)
T d2az4a1 108 VPVDHDAYGASALLIRTPD-----HFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFP 168 (183)
T ss_dssp EECCCSSTTCEEEEEEETT-----EEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSC
T ss_pred ecccccccccceeeeeccC-----ceEEEcCcccccCCCCchhhhHHhhCCCCCEEEECCCCCCCC
Confidence 99987 9999999999865 699999999987543221 1222337999999999987643
|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: RNase Z-like domain: Ribonuclease Z (RNase Z) species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=4.1e-17 Score=180.57 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=131.7
Q ss_pred CCCCCCCCCCCCCCCCCeeE-e---CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC--------
Q 001045 24 SPPDSLIFPPIPRTFPPSKH-V---PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW-------- 81 (1176)
Q Consensus 24 ~l~s~~~~p~~~r~~p~~~~-i---pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~-------- 81 (1176)
-||||+++|...|..+|+.+ + .+..+||||+.. ...++++|||||+|.||++||+.+.
T Consensus 5 ~LGtg~~~p~~~r~~s~~~v~~~~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~I~iTH~H~DH~~Gl~~ll~~~~~~~~ 84 (307)
T d1y44a1 5 FLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGG 84 (307)
T ss_dssp EEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHHHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTC
T ss_pred EEeeCCCcCCCCCCcCEEEEEEEccCCCEEEEeCcHHHHHHHHHcCCChhHCCEEEEcccchHhccchhhhhhhhcccCC
Confidence 48999999999999999988 4 455699999821 1257999999999999999998632
Q ss_pred -CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCC----------
Q 001045 82 -SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR---------- 144 (1176)
Q Consensus 82 -~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~---------- 144 (1176)
....||+++.+.+.+...+... ...+..++.+..+...+++|+++++.|...+.+|.++....
T Consensus 85 ~~~l~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T d1y44a1 85 EDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLK 164 (307)
T ss_dssp CSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSSBEEEEEEECCBCCCC------
T ss_pred CCcccccCCcchhHHHHHHhhhcccccCcceeEEEccCCceEeccCceEEEeeeccccccccccccccccccchhhhhhh
Confidence 2578999999999988765321 11355667777777889999999999988899988875321
Q ss_pred -------------------------------------CCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCC
Q 001045 145 -------------------------------------NGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNP 187 (1176)
Q Consensus 145 -------------------------------------~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~ 187 (1176)
.| .+++|+||.++.+. ...-+.++|+||+||||.+.
T Consensus 165 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~g--~~~~~sgDt~~~~~-----l~~~~~~~DlLi~E~~~~~~ 237 (307)
T d1y44a1 165 EMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKG--RSVVFSGDTRVSDK-----LKELARDCDVMVHEATFAKE 237 (307)
T ss_dssp --------------------------------CCCCBCC--CEEEECCSCBCCHH-----HHHHTTTCSEEEEECCBCTT
T ss_pred hcCCCCcchhhhcccccEEEEeeeEEeecceeeeccccc--ccccccccccchHH-----HHHhhcCCceEEEeccccch
Confidence 12 58999999987653 12223799999999999875
Q ss_pred CCC--CCChHHHHHHHHHHHHHH
Q 001045 188 KFL--FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 188 ~~~--~p~~~e~~~~l~~~i~~~ 208 (1176)
... ....|...+++.++++++
T Consensus 238 ~~~~a~~~~H~t~~~a~~~a~~~ 260 (307)
T d1y44a1 238 DRKLAYDYYHSTTEQAAVTAKEA 260 (307)
T ss_dssp CHHHHHHTTCCBHHHHHHHHHHH
T ss_pred hhhhcccCCCCCHHHHHHHHHHc
Confidence 321 011244556677777765
|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: RNase Z-like domain: Ribonuclease Z (RNase Z) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.1e-16 Score=176.65 Aligned_cols=179 Identities=15% Similarity=0.077 Sum_probs=127.7
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-e----CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC------
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-V----PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW------ 81 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-i----pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~------ 81 (1176)
--||||+++|.+.|..+|+.+ + .+..+++||+.. ...++++|||||+|.||++||+.+.
T Consensus 4 ~~LGtg~~~p~~~r~~s~~li~~~~~~~~~~iL~DcG~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~Gl~~ll~~~~~~ 83 (305)
T d2cbna1 4 IFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMS 83 (305)
T ss_dssp EEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHT
T ss_pred EEEccCCCCCCCCCccCEEEEEEecCCCCcEEEEeCchHHHHHHHHhCCCHHHCcEEEEccccHHHhCchhhhhhhhhcc
Confidence 358999999999999999988 3 567799999821 2357999999999999999998642
Q ss_pred ---CCceEEeCHHHHHHHHHhhccC----CCceEEeCCC--ceEEECCEEEEEEecCCCcCceEEEEEEcCC--------
Q 001045 82 ---SKGIIFCSEITSRLLSQILNIN----PKFIYPLPIK--IPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-------- 144 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~----~~~i~~l~~~--~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~-------- 144 (1176)
.+..||+++.+.+.+....... ...+..++.+ ..+..+.++|.+++..|......|.+.....
T Consensus 84 ~~~~~l~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (305)
T d2cbna1 84 GIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQA 163 (305)
T ss_dssp TCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSCCEEEEEEECCCCCCBCHHH
T ss_pred CCcccccccCChhHHHHHHHHhhhhcccccccceeeecccccceeccceeEEeeeccccccccccccccccCCccchhhh
Confidence 2578999999999988765321 1223333444 3455678999999999988888888864211
Q ss_pred ---------------------------------------CCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCC
Q 001045 145 ---------------------------------------NGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYC 185 (1176)
Q Consensus 145 ---------------------------------------~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~ 185 (1176)
+| .+++|+||+++.+.. ...+.++|+||+||||.
T Consensus 164 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~~i~~sgDt~~~~~l-----~~~~~~~d~LI~E~t~~ 236 (305)
T d2cbna1 164 LKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPG--KALAIFGDTGPCDAA-----LDLAKGVDVMVHEATLD 236 (305)
T ss_dssp HHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCC--CEEEECCSCBSCSTH-----HHHHTTCSEEEEECCBC
T ss_pred hhhcCCCCchhhhhcCcceEEEEeeceeeeecccccccccc--ceeecccccCCchhH-----HHHhhccceeeeccccc
Confidence 13 589999999876541 22237999999999997
Q ss_pred CCCCC--CCChHHHHHHHHHHHHHH
Q 001045 186 NPKFL--FPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 186 ~~~~~--~p~~~e~~~~l~~~i~~~ 208 (1176)
+.... ....|...+++.++++++
T Consensus 237 ~~~~~~a~~~~H~t~~~~~~la~~~ 261 (305)
T d2cbna1 237 ITMEAKANSRGHSSTRQAATLAREA 261 (305)
T ss_dssp GGGHHHHHHTTCCBHHHHHHHHHHH
T ss_pred hhhhhcccCCCCCCHHHHHHHHHHc
Confidence 64211 011233444566666655
|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: mRNA capping enzyme domain: mRNA capping enzyme alpha subunit species: Yeast (Candida albicans) [TaxId: 5476]
Probab=99.65 E-value=1.3e-17 Score=180.34 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=103.5
Q ss_pred CceEEEEEecceeEEEEEEee----CCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCc
Q 001045 978 NKAFTCEYKYDGQRAQIHKLV----DGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCK 1050 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~----~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~ 1050 (1176)
..+|+|++|+||+|+|+|+.. .+.+.+++|+++.+. ..+|....... .......+.+||||++......
T Consensus 59 ~~~Y~v~eK~DG~R~lL~i~~~~~~~~~~~li~R~~~~~~~~~~~~~~~~~~~~-~~~~~~~~tilDGElv~~~~~~--- 134 (245)
T d1p16a2 59 QKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETR-EKPTYHHGTLLDGELVLENRNV--- 134 (245)
T ss_dssp HSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCS-SSCCCCSSEEEEEEEEEECCSS---
T ss_pred cCCEEEEECcCCeEEEEEEEEcCCCceEEEEEeCCCCeEEcccccccccccccc-ccccccCCeeEEEEEEeecccC---
Confidence 357999999999999999842 346899999988652 12332221110 0112345789999999864321
Q ss_pred ccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC--------------CCc
Q 001045 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK--------------MGY 1116 (1176)
Q Consensus 1051 ~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~--------------~~~ 1116 (1176)
.+.+++|++||++++||+++.+.||.+|++.|++.+.... ...
T Consensus 135 -----------------------~~~~~~~~ifDil~~~g~~l~~~~l~~R~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 191 (245)
T d1p16a2 135 -----------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFP 191 (245)
T ss_dssp -----------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSC
T ss_pred -----------------------CcceEEEEEeeehhhCCceeeeccHHHHHHHHHHHHHHhhhhhhhcccccccchhhh
Confidence 1235899999999999999999999999999998763110 001
Q ss_pred EEEeEEEEEcCCCCCCccccCHHHHHHHHHHH--HhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1117 FQYAKEMTVEGDDNCLTSDVSLSKINNFLEEA--LHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1117 i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~a--i~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+.. .... ....+++.++++.. +..+.||||++..+ ++|.+| |+.+|
T Consensus 192 ~~~-~~k~----------~~~~~~~~~l~~~~~~~~~~~DGLIf~p~~--~pY~~G-r~~~~ 239 (245)
T d1p16a2 192 FKV-GFKT----------MLTSYHADDVLSKMDKLFHASDGLIYTCAE--TPYVFG-TDQTL 239 (245)
T ss_dssp CEE-EECC----------CEEGGGTHHHHTTGGGCSSCEEEEEEEESS--SCCCSE-EEEEE
T ss_pred hhh-hhhh----------hhhHHHHHHHHHHhhhcCCCCCeEEEEcCC--CCEeCC-CCCCe
Confidence 111 0000 11223444555432 45688999999987 899998 54444
|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: mRNA capping enzyme domain: RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain species: Chlorella virus PBCV-1 [TaxId: 10506]
Probab=99.63 E-value=2.2e-16 Score=168.98 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=112.8
Q ss_pred HhccCceEEEEEecceeEEEEEEeeC---CeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCc
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKLVD---GTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCK 1050 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~~~---g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~ 1050 (1176)
..+...+|++++|+||+|+++++... +.+.+++|++..++..+..+.. ....+.|||||++..+..
T Consensus 60 ~~l~~~~Y~vseK~DG~R~ll~~~~~~~~~~~~li~r~~~~~~~~~~~~~~-------~~~~~ti~DGEli~~~~~---- 128 (228)
T d1ckma2 60 EKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-------VLFQGSIFDGELCVDIVE---- 128 (228)
T ss_dssp HHHHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-------TGGGCEEEEEEEEEETTT----
T ss_pred hhhccCCeEEEEeecCEEEEEEEEecCCceEEEEEeCCCceEEcccccCch-------hhcCCceEeEEEEeeccc----
Confidence 34445689999999999999998532 4689999999987654433321 123579999999986421
Q ss_pred ccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCC-----CcEEEeEEEEE
Q 001045 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM-----GYFQYAKEMTV 1125 (1176)
Q Consensus 1051 ~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~-----~~i~~~~~~~v 1125 (1176)
-..+|++||+++++|.++.+.||.+|++.|++++..... -.+...+...
T Consensus 129 -------------------------~~~~f~ifD~l~~~g~~~~~~pf~~Rl~~L~~~l~~~~~~~~~~~~i~~k~~~~- 182 (228)
T d1ckma2 129 -------------------------KKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIP- 182 (228)
T ss_dssp -------------------------TEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEE-
T ss_pred -------------------------ccceEEEeeEEEEcCcchhcCChHHHHHHHHHHHhhhhccccCceeEEeeeeee-
Confidence 136799999999999999999999999999999832211 1244433333
Q ss_pred cCCCCCCccccCHHHHHHHHHH-HHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1126 EGDDNCLTSDVSLSKINNFLEE-ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1126 ~~~~~~~~~~~~~eei~~~~~~-ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
....+.+.+.++. ....++||||++..+ ++|.+| |+.+|
T Consensus 183 ---------~~~~~~l~~~~~~~~~~y~~DGLIf~p~~--~pY~~G-r~~~~ 222 (228)
T d1ckma2 183 ---------LEHPTIIKDHLKKANAIYHTDGLIIMSVD--EPVIYG-RNFNL 222 (228)
T ss_dssp ---------TTCHHHHHHHHHHHHHHSCEEEEEEEESS--SCCCCE-EEEEE
T ss_pred ---------hhhHHHHHHHHhhhccCCCCceEEEEeCC--CCEeCC-CCCCe
Confidence 2456677777644 567899999999987 899999 55544
|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: RNase Z-like domain: Ribonuclease Z (RNase Z) species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=3.1e-12 Score=138.42 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=121.1
Q ss_pred eEeCCccEEEecCC-------cCCCCccEEEeccCChhhhCCcccCC-----------CCceEEeCHHHHHHHHHhhc--
Q 001045 42 KHVPNTRFLIDAFR-------YAADFSVSYFLSHFHSDHYTGLSPSW-----------SKGIIFCSEITSRLLSQILN-- 101 (1176)
Q Consensus 42 ~~ipg~~~liD~~~-------~~~~~i~avfITHaH~DHiggL~~l~-----------~~~pIY~s~~T~~ll~~~l~-- 101 (1176)
.++++.++|||||. ....+|++|||||+|.||++||+.+. ....+|+++.+..++.....
T Consensus 15 ~~~~~~~iLiD~G~g~~~~l~~~~~~i~~I~ITH~H~DHi~GLp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 94 (280)
T d2e7ya1 15 IYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIK 94 (280)
T ss_dssp EEEGGGTEEEEECTTHHHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCHHHHHHHHHHH
T ss_pred EEECCCEEEEECChhHHHHhhhccccCCEEEEecCchhhhcCcHHHHHhhhccccCCCccccccCchHHHHHHHHHHHHh
Confidence 34899999999983 22368999999999999999998642 14678999998887664321
Q ss_pred -----c-CCCceEEeCCCceEEE-----CCEEEEEEecCCCcC--ceEEEEEEcC-------------------------
Q 001045 102 -----I-NPKFIYPLPIKIPVLI-----DGCEVVLVGANHCPG--AVQFLFKVPG------------------------- 143 (1176)
Q Consensus 102 -----~-~~~~i~~l~~~~~~~i-----~~~~Vt~~~a~H~pG--S~~flie~~~------------------------- 143 (1176)
. .......++.+....+ .+++|+++.+.|... +++|.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (280)
T d2e7ya1 95 RANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRD 174 (280)
T ss_dssp HHCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTG
T ss_pred hcccccccceeeeeecccceeeeccccccceEEEEEEecccCCccceeeEEeccccceeeeeccccchhhhhhhhhcCcc
Confidence 1 1122445555554443 368999999999443 5666664321
Q ss_pred -----CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCC
Q 001045 144 -----RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQK 218 (1176)
Q Consensus 144 -----~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g 218 (1176)
..| ..+.|+||.+.... . ...++|+||+||||..........|...+++.++++++ +.
T Consensus 175 ~~~~~~~~--~~~~~~gd~~~~~~-----~--~~~~~d~li~e~~~~~~~~~~~~~H~t~~e~~~la~~~--------~~ 237 (280)
T d2e7ya1 175 FVTEEYHK--KVLTISGDSLALDP-----E--EIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAA--------GV 237 (280)
T ss_dssp GGEEEEEE--EEEEECCSCSSCCH-----H--HHTTCSCEEEECCBC--------CCCBHHHHHHHHHHH--------TC
T ss_pred ccccccCC--ceeeecCCccCCcH-----H--HHhcCCeEEEeccchhHHHhhhccCCCHHHHHHHHHHc--------CC
Confidence 002 46889999876542 1 12689999999999987544334455666777777766 22
Q ss_pred eEEEEEeccc---cchHHHHHHHHH-Hc-CCcEEEcc
Q 001045 219 RVLFLVATYV---IGKEKILIEIFK-KC-GRKVCVDS 250 (1176)
Q Consensus 219 ~vlvli~~~s---lGR~q~ll~ia~-~~-g~~I~vdg 250 (1176)
+.+ ++.+++ .++.+++++.++ .+ +.+|++++
T Consensus 238 k~l-vltH~s~ry~~~~~~~~~~~~~~~p~~~i~~~~ 273 (280)
T d2e7ya1 238 KKV-ILYHISTRYIRQLKSVIKKYREEMPDVEILYMD 273 (280)
T ss_dssp CEE-EEESCCGGGHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CEE-EEEecCcccCccHHHHHHHHHHhCCCCEEEECC
Confidence 333 445555 344555555544 34 68888864
|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Coenzyme PQQ synthesis protein B, PqqB domain: Coenzyme PQQ synthesis protein B, PqqB species: Pseudomonas putida [TaxId: 303]
Probab=99.31 E-value=1.6e-12 Score=140.85 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCCCCCCCCeeEe-CC-ccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCH
Q 001045 32 PPIPRTFPPSKHV-PN-TRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSE 90 (1176)
Q Consensus 32 p~~~r~~p~~~~i-pg-~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~ 90 (1176)
|...|..+++.+. .| ..+||||+.. ...+|++|||||+|.||+.||+.+.. ..++|+++
T Consensus 33 p~~~R~~ss~~i~~~g~~~lLiD~G~~~~~ql~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~~GL~~l~~~~~~~v~~~~ 112 (304)
T d1xtoa_ 33 KATARTQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTD 112 (304)
T ss_dssp CCCCBCBCEEEEESSSSSEEEESCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECH
T ss_pred CCCcceeeEEEEEeCCCeEEEEeCCchHHHHHHhhhhhhhhcccCCccceEEEEecCCcCeehhHHHHhhhccccccccc
Confidence 3445677777774 44 3589999821 23579999999999999999998643 67899999
Q ss_pred HHHHHHHHhhcc--------CCCceEEeCCCceEEE---CCEEEEEEecCCCc-------------CceEEEEEEcCCCC
Q 001045 91 ITSRLLSQILNI--------NPKFIYPLPIKIPVLI---DGCEVVLVGANHCP-------------GAVQFLFKVPGRNG 146 (1176)
Q Consensus 91 ~T~~ll~~~l~~--------~~~~i~~l~~~~~~~i---~~~~Vt~~~a~H~p-------------GS~~flie~~~~~G 146 (1176)
.+.......+.+ .......+..+..+.+ ++++|+++++.|.. .+.+|.++... .|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 191 (304)
T d1xtoa_ 113 MVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTR-TG 191 (304)
T ss_dssp HHHHHTTTTSCHHHHHTTSTTCEEEEECCSSSCBCCTTCTTEEEEEEECCCCCCTTSTTTTSCCTTSSEEEEEEETT-TC
T ss_pred hhhhhhhhccchhhhcccccCccceeeeeccCceeeccCCCcEEeeeeeccccccccceeccccccceeeEEEeccc-cc
Confidence 998876544311 1112345555555544 67999999999933 35688887654 23
Q ss_pred cccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCC
Q 001045 147 GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCN 186 (1176)
Q Consensus 147 ~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~ 186 (1176)
++++|.+|........ +.....+|++++|+++..
T Consensus 192 --~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 225 (304)
T d1xtoa_ 192 --GKLFYAPGLGQVDEKL----LAMMHGADCLLVDGTLWE 225 (304)
T ss_dssp --CEEEEESCCSCCCHHH----HHHHTTCSEEEEECCCSS
T ss_pred --ccccccccceeeehhh----hhhhhccchhhhhhhhcc
Confidence 6899999986544322 222268999999999865
|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: RNA ligase domain: RNA ligase 2, N-terminal domain species: Bacteriophage T4 [TaxId: 10665]
Probab=99.13 E-value=8.8e-11 Score=125.08 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=74.6
Q ss_pred ccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCcc--CCCCc------hhHHHHHHhhcCCCCCCeEEEEEEEE-EecC
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE--TTSRF------PDLISIINEFCKPAAGTFILDAEVVA-IDRK 1046 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d--~T~~y------pdl~~~l~~~~~~~~~~~ILDGElVa-~d~~ 1046 (1176)
+.+..|++|+|+||+|+|+|+ .+++++++|||+.. .+.-| +.+.+.+..++......+++||||++ |.-.
T Consensus 25 ~~~~~~vveEKlDG~n~~l~~-~~~~~~~~SR~~~l~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~GE~~g~ 103 (233)
T d1s68a_ 25 LTGGEWVAREKIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (233)
T ss_dssp CSCSCEEEEECCCSEEEEEEE-ESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred cCCCeEEEEEeECCccEEEEE-ECCEEEEEecCCcccCCCccchhhhhhhHHHHHHHHHHhhhhhccCcceEEEeecccC
Confidence 578899999999999999999 58999999999963 33222 23444444443334567899999997 3310
Q ss_pred CCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC-CcccccCCHHHHHHHHHHh
Q 001045 1047 NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN-GEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1047 ~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln-G~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
. ++.. ....+..|++||+...+ +....-+++.++..+++..
T Consensus 104 ---~------iq~~------------~~~~~~~f~~Fdv~~~~~~~~~~fl~~d~~~~~~~~~ 145 (233)
T d1s68a_ 104 ---G------IQKN------------VDYCDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (233)
T ss_dssp ---T------TSSS------------CCCCSCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred ---C------cccc------------ccccccceEEEEEEEeccCCccceecHHHHHHHHhcC
Confidence 0 0100 01224578999997664 3444456888888888775
|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: ROO N-terminal domain-like domain: Nitric oxide reductase N-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=98.88 E-value=2.5e-09 Score=114.08 Aligned_cols=114 Identities=13% Similarity=0.050 Sum_probs=92.7
Q ss_pred CCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHHHHhhc
Q 001045 39 PPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 39 p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll~~~l~ 101 (1176)
.+|.+..+..+|||++.. ...+|++|++||.|.||+||+..+ ....++|+++.+.+.+...+.
T Consensus 37 N~yli~~e~~~LIDtg~~~~~~~~~~~~~~~~~~~~i~~Ii~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (249)
T d1ycga2 37 NAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYS 116 (249)
T ss_dssp CCEEECSSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHHTC
T ss_pred EEEEEeCCCEEEEECCCchhhHHHHHHHHHhcCCCCceEEEecccccchhhHHHHHHHhhccceEeeehHHHHHHhhhcc
Confidence 466666677799999721 225799999999999999999763 346899999999999998877
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
........+..|+.+.+++.+++++.+ +|.+|++.++... .+++||||.-.
T Consensus 117 ~~~~~~~~~~~g~~l~lg~~~~~~~~~p~~h~~~~~~~~~~~-------~~~lf~GD~~~ 169 (249)
T d1ycga2 117 HIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPE-------EALLLPNDAFG 169 (249)
T ss_dssp SCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEETT-------TTEEEEETTTC
T ss_pred ccccceeeccCCCEEEEEeeEEEEEecCCCCCCCeEEEEECC-------CCEEEecCccc
Confidence 666667888999999999988888877 4899999988764 36999999743
|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: ROO N-terminal domain-like domain: Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=98.85 E-value=1.8e-09 Score=115.40 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=92.1
Q ss_pred CCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHHHHhhc
Q 001045 39 PPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 39 p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll~~~l~ 101 (1176)
.+|.+..+..+|||.+.. ...+|++|++||.|.||+||+..+ ....++|+++.+...+...+.
T Consensus 35 N~ylI~~~~~vLIDtg~~~~~~~~~~~~~~~~~~~~I~~Ii~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (249)
T d1e5da2 35 NAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHFH 114 (249)
T ss_dssp EEEEECSSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHHHHHC
T ss_pred EEEEEEcCCEEEEeCCChHHHHHHHHHHHHhcCCCCccEEEeCCcChHhhchHHHHHHHhcccceeehhhhHHhhhhhhc
Confidence 356666666799999721 225899999999999999999753 346789999999988888777
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
........+..++.+.+|+.+++++.+ +|.+|++++++.. .++|||||+-.
T Consensus 115 ~~~~~~~~~~~g~~l~lg~~~~~~~~~p~gHt~~~~~~~~~~-------~~~LfsGD~~~ 167 (249)
T d1e5da2 115 YKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFAD-------EKVLISNDIFG 167 (249)
T ss_dssp CSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEEEETT-------TTEEEEETTTC
T ss_pred cccccceeecCCcEEeecceEEEEeecCCCCCCCCeEEEecC-------ceEEEeecccC
Confidence 666678889999999999988888876 6999999988864 36999999743
|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]
Probab=98.84 E-value=5.4e-09 Score=112.38 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCCeeE-eCCccEEEecCC---------------cCCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHh
Q 001045 38 FPPSKH-VPNTRFLIDAFR---------------YAADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~---------------~~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~ 99 (1176)
.+++.+ -++..+|||++- ....+|++||+||.|.||++|+..+. ...+||+++.+...+...
T Consensus 24 ~~~~li~~~~~~vLID~g~~~~~~~i~~~l~~~~~~~~~i~~il~TH~H~DH~gg~~~~~~~~~~~i~~~~~~~~~~~~~ 103 (262)
T d1k07a_ 24 LASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSG 103 (262)
T ss_dssp BCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEEHHHHHHHHTT
T ss_pred cEEEEEEECCEEEEEeCCCchhHHHHHHHHHHcCCCccceeEEEECCCccccccchhhHhhccCCceEechhHHHHHhhh
Confidence 346666 567789999972 12247899999999999999997643 268999999998888764
Q ss_pred hcc-------------CCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 100 LNI-------------NPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 100 l~~-------------~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
... .......+..|+.+.+++..++++.+ ||.+|+++|++.... .+....++|+||+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~~~PGHt~g~~~~~~~~~~-~~~~~~~l~~gd~~~~ 177 (262)
T d1k07a_ 104 GKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKD-HGKQYQAVIIGSIGVN 177 (262)
T ss_dssp TTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEE-TTEEEEEEEECCCCCC
T ss_pred hhhhhhhhcccccccccccccEEeecCceEeecccccccccCCCCCCCCEEEEEeccC-CcccCCEEEECCccCC
Confidence 311 01124567889999999999999987 999999999987643 1222479999998654
|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Xanthomonas maltophilia [TaxId: 40324]
Probab=98.74 E-value=1.3e-08 Score=109.92 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=89.1
Q ss_pred CCCCeeE-eCCccEEEecCC---------------cCCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFR---------------YAADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~---------------~~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
...+|++ .++..+|||++- ....+|++|++||+|.||+||++.+. ...+||+++.+...+..
T Consensus 36 ~~~~yli~~~~g~vLIDtG~~~~~~~~~~~l~~~G~~~~~I~~Ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~ 115 (266)
T d2aioa1 36 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLAR 115 (266)
T ss_dssp SSCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHHHHHHHHT
T ss_pred CcEEEEEEeCCEEEEEeCCCchhhHHHHHHHHHcCCChHHeEEEEecCCCcccccchHHHhhhcceEEEEEechhhhhhc
Confidence 3568888 688899999961 12246999999999999999998753 36899999999998875
Q ss_pred hhcc----------CC-CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 99 ILNI----------NP-KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 99 ~l~~----------~~-~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
.... .+ ...+.+..|+.+.+++.+++++.+ ||.||+++|++..... +.-..++|.+|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~d~~l~dg~~~~~gg~~l~~~~~PGHt~g~~~~~~~~~~~-~~~~~v~~~~~~~ 186 (266)
T d2aioa1 116 GGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRN-GKPVRIAYADSLS 186 (266)
T ss_dssp TTCSBTTTBTTTCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TEEEEEEECCCCC
T ss_pred cccccccccccccccccccccccccceeeecCCceEEEEECCCCCCcCEEEEEecccc-CcceeEEECCCcC
Confidence 4311 11 112567889999999999999886 9999999999975321 1112466666643
|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: PqsE-like domain: Quinolone signal response protein PqsE species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.71 E-value=9.6e-09 Score=112.57 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=83.8
Q ss_pred CCCCCeeEe-CC-ccEEEecCC---------------cCCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHH
Q 001045 36 RTFPPSKHV-PN-TRFLIDAFR---------------YAADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRL 95 (1176)
Q Consensus 36 r~~p~~~~i-pg-~~~liD~~~---------------~~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~l 95 (1176)
...+.|.++ .+ ..++||++- ....+|++||+||+|.||+||+..+ +.+.+||+++.+.+.
T Consensus 20 ~~~~~yli~~~~~~~vLID~G~~~~~~~~~~~l~~~~~~~~~I~~vi~TH~H~DH~Gg~~~l~~~~p~a~v~~~~~~~~~ 99 (298)
T d2q0ia1 20 VQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQA 99 (298)
T ss_dssp TTSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSHHHHTTHHHHGGGCTTCEEEEEHHHHHH
T ss_pred CccEEEEEEECCCCEEEEcCCCCchHHHHHHHHHHcCCCchhceEEEeCCCCccccCchhhHHhhCCCCEEEecHHHHHH
Confidence 345677664 33 357999981 1235799999999999999998754 457899999998876
Q ss_pred HHHhh-------------cc----------CCCceEEeCCCceEEEC-CEEEEEEec-CCCcCceEEEEEEcCCCCcccE
Q 001045 96 LSQIL-------------NI----------NPKFIYPLPIKIPVLID-GCEVVLVGA-NHCPGAVQFLFKVPGRNGGFER 150 (1176)
Q Consensus 96 l~~~l-------------~~----------~~~~i~~l~~~~~~~i~-~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~ 150 (1176)
+.... .. .......+..|+.++++ +..+.++.+ ||.+|++++++.. .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~~~~~PGHt~g~~~~~~~~-------~~ 172 (298)
T d2q0ia1 100 WKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVR-------RR 172 (298)
T ss_dssp TTCHHHHHHHHHHHHTTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECCSSSTTCEEEEETT-------TT
T ss_pred HhcchhhhhHHHHhhhhhhhhhcccccccccccCceeecCCCEEEeecceEEEEeeccccCCCCceEEeCC-------CC
Confidence 54210 00 01235678888999985 578888887 8999999987653 46
Q ss_pred EEEECCC
Q 001045 151 YVHTGDF 157 (1176)
Q Consensus 151 IlYTGDf 157 (1176)
++||||.
T Consensus 173 ~lf~GD~ 179 (298)
T d2q0ia1 173 RLFCGDA 179 (298)
T ss_dssp EEEEETT
T ss_pred EEEEcCc
Confidence 9999995
|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.68 E-value=1.4e-08 Score=109.47 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=81.7
Q ss_pred CCCCeeE-eCCccEEEecCC---------------cCCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFR---------------YAADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~---------------~~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~ 98 (1176)
..+++.+ -++..+|||++- ....+|++|++||.|.||+||++.+.. +.+||+++.+..++..
T Consensus 26 ~~n~~lI~~~~~~vLIDtG~~~~~~~~~~~i~~~~~~~~~I~~ii~TH~H~DH~gg~~~l~~~~~a~i~~~~~~~~~~~~ 105 (264)
T d2gmna1 26 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEG 105 (264)
T ss_dssp SSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHHCCEEEEEGGGHHHHHH
T ss_pred CeEEEEEEECCEEEEEcCCCcchHHHHHHHHHHcCCCchheEEEEECCCCcccccchhHHHHhcCCeEEeeccccccccc
Confidence 4456777 566689999971 112468999999999999999987542 6899999999999886
Q ss_pred hhccC-----------CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEc
Q 001045 99 ILNIN-----------PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVP 142 (1176)
Q Consensus 99 ~l~~~-----------~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~ 142 (1176)
..... ...-..+..|+.+.+++.+++++.+ ||.+|+++|++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~i~lg~~~~~v~~~PGHt~g~~~~~~~~~ 161 (264)
T d2gmna1 106 GYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVK 161 (264)
T ss_dssp TCCTTCTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEE
T ss_pred ccccccccccccccccccceEEEeeeccccccccccccccCCCCCCCcEEEEEecc
Confidence 53211 1112567889999999999999887 99999999999763
|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Methyl parathion hydrolase domain: Methyl parathion hydrolase species: Pseudomonas sp. WBC-3 [TaxId: 165468]
Probab=98.65 E-value=1.2e-08 Score=111.88 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCCeeE-eCCccEEEecCCc-------------------CCCCccEEEeccCChhhhCCcccC----CCCceEEeCHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY-------------------AADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEIT 92 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~-------------------~~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T 92 (1176)
.+.++++ .++..+|||++-. ...+|++|++||+|.||+||+..+ +.+..++++...
T Consensus 61 ~vn~~LI~~~~~~iLiDtG~g~~~~~~~~~l~~~L~~~Gi~p~dI~~VilTH~H~DHiGgl~~~~~~~~p~~~~~~~~~e 140 (294)
T d1p9ea_ 61 SVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKE 140 (294)
T ss_dssp EEEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHHH
T ss_pred eeEEEEEEECCeEEEEECCCCcccCccHHHHHHHHHHcCCCHHHCcEEECCCCCccccCchhhhhhhccCCceeehhhhh
Confidence 4456777 5888999999732 114799999999999999999753 346788888877
Q ss_pred HHHHHHhhcc---C--------------------CCceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCcc
Q 001045 93 SRLLSQILNI---N--------------------PKFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGF 148 (1176)
Q Consensus 93 ~~ll~~~l~~---~--------------------~~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~ 148 (1176)
...+...... . ...+.. .+....+ ++++|...| ||.+|+++|+++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gi~vi~tp-GHt~Gh~~~~i~~~~----- 212 (294)
T d1p9ea_ 141 ADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKP--FSGNTDLVPGIKALASH-GHTPGHTTYVVESQG----- 212 (294)
T ss_dssp HHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCC--BCSSEECSTTEEEEECT-TSSTTCEEEEEEETT-----
T ss_pred Hhhhhhhhhhhhccchhhcchhhhhhhhcccccccceeee--ccCceeecCCeEEEecc-CCCCCceeeeeccCC-----
Confidence 6655322110 0 000111 1122223 455554443 999999999999854
Q ss_pred cEEEEECCCCCcc
Q 001045 149 ERYVHTGDFRFCK 161 (1176)
Q Consensus 149 ~~IlYTGDfr~~~ 161 (1176)
++++|+||.-+..
T Consensus 213 ~~~lf~GD~~~~~ 225 (294)
T d1p9ea_ 213 QKLALLGDLILVA 225 (294)
T ss_dssp EEEEECTTSCCCH
T ss_pred cEEEEEeeecccC
Confidence 6999999986553
|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: TM0894-like domain: Hypothetical protein TM0894 species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=1.7e-08 Score=103.18 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhh--
Q 001045 39 PPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQIL-- 100 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l-- 100 (1176)
.++.+ ..+..++||++-. ...+|++|++||+|.||+||++.+. +..+++++..........
T Consensus 24 ~~~li~~~~~~iliD~G~~~~~~~~~~~l~~~g~~~~~I~~IiiTH~H~DH~gg~~~~~-~~~~~~~~~~~~~~~~~~~~ 102 (207)
T d1ztca1 24 TVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE-NATFYVHEVYKTKNYLSFGT 102 (207)
T ss_dssp CEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT-TCEEEEEGGGGGSCGGGGCH
T ss_pred EEEEEEECCeEEEEeCCCCccHHHHHHHHHHcCCChHHeeEEEeCCCCccccccchhcc-Ccceeeechhhhhhcccccc
Confidence 44454 6888899999721 1246999999999999999998753 445555433322111100
Q ss_pred --------ccCCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 101 --------NINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 101 --------~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
............+....++.........||.+|++++++..++. .+++||||+-..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGHt~~~~~~~~~~~~~----~~vlf~gD~~~~ 166 (207)
T d1ztca1 103 IVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLSFLLDTENA----GRVLITGDITPN 166 (207)
T ss_dssp HHHHHHHHHHHTCCSEEEECSCCEETTTTEEEEECCSSSTTCEEEEEEETTT----EEEEECGGGSCS
T ss_pred ccccccccccccccceeeeccceeeeeeeeeeeecccCCCCcEEEEEecCCC----ceEEEEcCCCCC
Confidence 00011112222333333333334455669999999999998642 589999997543
|
| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Glyoxalase II (hydroxyacylglutathione hydrolase) domain: Glyoxalase II (hydroxyacylglutathione hydrolase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.60 E-value=1.7e-08 Score=108.51 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=76.7
Q ss_pred ccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHhhccCCCceEEeCCCce
Q 001045 47 TRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQILNINPKFIYPLPIKIP 115 (1176)
Q Consensus 47 ~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~ 115 (1176)
..++||++.. ....+.+||+||.|.||++|...+.. ..+||+++..... .+..-+.+..|+.
T Consensus 24 ~avvIDPg~~~~i~~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~~~~~~v~~~~~~~~~-------~~~~~~~l~dgd~ 96 (254)
T d1xm8a_ 24 TVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDR-------IPGIDMALKDGDK 96 (254)
T ss_dssp CEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGGGGG-------STTEEEEECTTCE
T ss_pred EEEEECCCCcHHHHHHHHHCCCceeEEecccCcccccCchHHHHhhcCCcEEeccccccc-------CCCCCEEecCCCe
Confidence 3589999732 12479999999999999999876532 5677776654321 1223467889999
Q ss_pred EEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 116 VLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 116 ~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.+|+.+++.+.+ ||.||+++|++.. .++++|||+-+.
T Consensus 97 i~lg~~~i~vl~TPGHT~ghi~~~~~~-------~~~lftGDtLf~ 135 (254)
T d1xm8a_ 97 WMFAGHEVHVMDTPGHTKGHISLYFPG-------SRAIFTGDTMFS 135 (254)
T ss_dssp EEETTEEEEEEECCSSSSSCEEEEEGG-------GTEEEEETTEET
T ss_pred eeecCcEEEEeeccCCCCCceEEEEcc-------cceEEeCCEEEe
Confidence 9999999999998 9999999999864 469999997543
|
| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Hypothetical protein TM0207 domain: Hypothetical protein TM0207 species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=2.2e-07 Score=96.81 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=78.1
Q ss_pred CCCeeE-eCCccEEEecCCcC------CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEe
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA------ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPL 110 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~------~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l 110 (1176)
.+++.+ ..|..+++|.+... ..++|+||+||.|.||+.. ... ......+
T Consensus 9 hs~~lIe~~g~~iliDP~~~~~~~~~~~~~~D~VliSH~H~DH~~~--~~~----------------------~~~~~~~ 64 (209)
T d1vjna_ 9 HACFALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNAH--HLV----------------------KGNFRVI 64 (209)
T ss_dssp TTEEEEEETTEEEEESCCC-----CCCCCBCSEEECSSCC---CGG--GGC----------------------BSSCEEE
T ss_pred ccEEEEEECCEEEEECCCCCccCCCCccCcCCEEEECCCCCCcCch--hhc----------------------ccccccc
Confidence 456777 78999999997321 2367999999999999642 100 1124456
Q ss_pred CCCceEEECCEEEEEEecCCCc-------CceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeC
Q 001045 111 PIKIPVLIDGCEVVLVGANHCP-------GAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182 (1176)
Q Consensus 111 ~~~~~~~i~~~~Vt~~~a~H~p-------GS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~Es 182 (1176)
..+..+++++++|+.+++.|.+ .+++|+|+.++ .+|+|+||..+..... ...++.++|++++-.
T Consensus 65 ~~~g~~~~~~~~i~~v~a~h~~~~~~~~~~~~~~~i~~~g-----~~i~~~GDt~~~~~~~---~~~~~~~~Dva~lpi 135 (209)
T d1vjna_ 65 DRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEG-----IKVCHLGDLGHVLTPA---QVEEIGEIDVLLVPV 135 (209)
T ss_dssp CSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETT-----EEEEECTTCCSCCCHH---HHHHHCCCSEEEEEC
T ss_pred cCcCcEecCCceeeeeeeeecCCCCccCCcceEEEEEcCC-----cEEEEeCCccCCCCHH---HHhhcCCceEEEEec
Confidence 6777899999999999999944 25899999864 7999999998755421 122346899999864
|
| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Bacillus cereus [TaxId: 1396]
Probab=98.57 E-value=2e-08 Score=105.54 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred eeE-eCCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhhccCC
Q 001045 41 SKH-VPNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 41 ~~~-ipg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
+.+ -++..++||.+. ....++.+|++||.|.||+||+..+.. ..++|++..+.+++.... +.
T Consensus 38 ~li~~~~~~iLIDt~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~~~v~~~~~~~~~~~~~~~~-~~- 115 (221)
T d1mqoa_ 38 LVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNG-YE- 115 (221)
T ss_dssp EEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHHTCEEECBHHHHHHHHHTT-CC-
T ss_pred EEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCCceEEEECCCCccccCCHHHHhhCCCceeechhhhhhhhhcc-cc-
Confidence 344 466678999751 112569999999999999999876432 578999999988776432 11
Q ss_pred CceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.....+..+..+.+++.++.++. .||.||++++++.. .+++|+||+-+
T Consensus 116 ~~~~~~~~~~~l~~g~~~i~~~~~~pgHt~g~~~~~~~~-------~~vLf~GD~~~ 165 (221)
T d1mqoa_ 116 EPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ-------YNILVGGCLVK 165 (221)
T ss_dssp CCCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEEEETT-------TTEEEEETTSC
T ss_pred cceeeccCCceEEEeeeeeEEeccCCCCCCCceEEEEcC-------CceEEecceec
Confidence 12334556667889999988875 49999999888853 47999999743
|
| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Glyoxalase II (hydroxyacylglutathione hydrolase) domain: Glyoxalase II (hydroxyacylglutathione hydrolase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=6e-08 Score=104.57 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=76.0
Q ss_pred ccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCCCceEEeCCCc
Q 001045 47 TRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINPKFIYPLPIKI 114 (1176)
Q Consensus 47 ~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~ 114 (1176)
..++||++.. ..-.+.+||+||.|.||++|+..+. ....+|..... .......+..++
T Consensus 24 ~a~vIDP~~~~~i~~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~gd 93 (260)
T d1qh5a_ 24 EAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDR----------IGALTHKITHLS 93 (260)
T ss_dssp EEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTT----------STTCSEECCTTC
T ss_pred EEEEEeCCCCHHHHHHHHHCCCeEEEEEcCCCChhhhccchhhhccccCccccccccc----------cccccccccccc
Confidence 4599999732 1247899999999999999987642 34445544321 112345778899
Q ss_pred eEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 115 PVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 115 ~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.+.+++++++.+.+ ||.+|+++|+++..++ ....+++|||+-+..
T Consensus 94 ~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~~--~~~~~lFtGDtLF~g 139 (260)
T d1qh5a_ 94 TLQVGSLNVKCLATPCHTSGHICYFVSKPGG--SEPPAVFTGDTLFVA 139 (260)
T ss_dssp EEEETTEEEEEEECCSSSTTCEEEEEECSSS--SSCCEEEEETTEETT
T ss_pred cceeeeeeeEEEEecCCCCccEEEEEcCCCC--cccceEEecCccccC
Confidence 99999999999998 9999999999987532 124699999975543
|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Pce catalytic domain-like domain: Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.53 E-value=1.8e-07 Score=102.08 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCccEEEeccCChhhhCCcccCCCC---ceEEeCHHHHH-----------------HHHHhhccCCCceEE-eCCCceEE
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSWSK---GIIFCSEITSR-----------------LLSQILNINPKFIYP-LPIKIPVL 117 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~~~---~pIY~s~~T~~-----------------ll~~~l~~~~~~i~~-l~~~~~~~ 117 (1176)
..|++++|||+|.||++||+.++.. ..||++..... ++............. ...+..+.
T Consensus 72 ~~ID~lilTH~h~DHigGl~~ll~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (305)
T d1wraa1 72 QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQ 151 (305)
T ss_dssp CCEEEEECCCSCHHHHTTHHHHHTTSCEEEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHHTCEEECSCCTTTTEEE
T ss_pred CcccEEEECCCCcchhcCHHHHHHhCCCCEEEeCCCccccccchhhhhhhHHHHHHHHHHHHHcCCCceeeeccCCcEEe
Confidence 4699999999999999999986543 46788764321 222111111111122 23355788
Q ss_pred ECCEEEEEEecCCC--------------cCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCC
Q 001045 118 IDGCEVVLVGANHC--------------PGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTT 183 (1176)
Q Consensus 118 i~~~~Vt~~~a~H~--------------pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsT 183 (1176)
++++.++.+...+. ..|+.++++..+ .++|++||............ .....+|+|.+-..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~Siv~~i~~~~-----~~~L~~GD~~~~~~~~ll~~-~~~~~~~~l~~~~H 225 (305)
T d1wraa1 152 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNG-----KKIYLGGDLDNVHGAEDKYG-PLIGKVDLMKFNHH 225 (305)
T ss_dssp ETTEEEEEESCSCCBCSSCSBCCBSSGGGGCCEEEEEETT-----EEEEECTTCCSTTSHHHHHH-HHHCCCSEEECTTT
T ss_pred eCCeeEEEeccccccccccccccccccChhhEEEEEEECC-----EEEEEecCcchHHHHHHHhh-ccccccceEEEccc
Confidence 89999998876551 247889999854 79999999865543221110 01146777765333
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEecccc----chHHHHHHHHHHcCCcEEEcc
Q 001045 184 YCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVI----GKEKILIEIFKKCGRKVCVDS 250 (1176)
Q Consensus 184 y~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~sl----GR~q~ll~ia~~~g~~I~vdg 250 (1176)
.+.. ......+.+.+ ..++ ++|++-.. ...+++++.+++.|++++...
T Consensus 226 HGs~-------~s~s~~~l~~i-----------~P~~-~iiS~g~~n~~~hP~~~~l~~l~~~g~~~~~t~ 277 (305)
T d1wraa1 226 HDTN-------KSNTKDFIKNL-----------SPSL-IVQTSDSLPWKNGVDSEYVNWLKERGIERINAA 277 (305)
T ss_dssp TBCS-------SSSCHHHHHHH-----------CCSE-EEESBSSCSBSSSBCHHHHHHHHHTTCEEEECB
T ss_pred CCCC-------ccCHHHHHHhh-----------CCCE-EEEECCCCCCCCCCCHHHHHHHHHCCCeEEEec
Confidence 3321 11112233222 2233 45544221 235788888899998887653
|
| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Aeromonas hydrophila, CphA [TaxId: 644]
Probab=98.51 E-value=3.2e-08 Score=103.92 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=73.3
Q ss_pred CeeE-eCCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhh---
Q 001045 40 PSKH-VPNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQIL--- 100 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l--- 100 (1176)
++.+ -.+..++||++- ....++++|++||+|.||+||+..+.. ..+||+++.+.++++...
T Consensus 25 ~~~i~~~~g~vlID~g~~~~~~~~l~~~i~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 104 (228)
T d1x8ha_ 25 SMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAEI 104 (228)
T ss_dssp EEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCCceEEEECCCCccccccchhhcccCceeeccHHHHHHHHhhhhhh
Confidence 3444 356678899861 223578999999999999999876432 579999999999887542
Q ss_pred ------ccC--C-Cce--EEeCCCceEEEC--CEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 101 ------NIN--P-KFI--YPLPIKIPVLID--GCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 101 ------~~~--~-~~i--~~l~~~~~~~i~--~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+.. . ..+ ..+..+..+.++ .+++..+..||.||++++++.. .+++|+||+-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~pGHt~g~~~~~~~~-------~~vlf~GD~~ 168 (228)
T d1x8ha_ 105 VAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPD-------EQVLYGGCIL 168 (228)
T ss_dssp HHHHHHHCTTSCCCCCCCCSEEESSCEEETTTTEEEECCCCSSSSSCCEEEETT-------TTEEECGGGS
T ss_pred cccccccccccccccccCCcEEecCcEEEecccEEEEecCCCCCCCCeEEEEcC-------CCEEEeccCc
Confidence 111 0 000 011123334554 4554333469999999988853 4699999974
|
| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Pseudomonas aeruginosa, VIM-2 [TaxId: 287]
Probab=98.48 E-value=6.9e-08 Score=101.04 Aligned_cols=114 Identities=18% Similarity=0.062 Sum_probs=85.2
Q ss_pred CeeE-eCCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhhccC
Q 001045 40 PSKH-VPNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQILNIN 103 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l~~~ 103 (1176)
++.+ -.+..++||++. ....++++|++||.|.||+||++.+.. ..++|+++.+...+.......
T Consensus 40 ~~li~~~~~~vLID~g~~~~~~~~~~~~i~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (230)
T d1ko3a_ 40 GLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEI 119 (230)
T ss_dssp EEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCCCEEEEECSSSSHHHHTTHHHHHHTTCEEEECHHHHHHHHHHTCCC
T ss_pred EEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhcCCeeEEEEECCCCccccCCHHHHhhcCCceEeeccccchhhcccccc
Confidence 3444 366789999861 123579999999999999999987543 578999999988887665432
Q ss_pred CC--ceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 104 PK--FIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 104 ~~--~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.. ....+..+..+.++++.+..+..||.+|++++.+.. .+++|+||+-+.
T Consensus 120 ~~~~~~~~~~~~~~l~~g~~~~~~~~pGHt~~~~~~~~~~-------~~~l~~GD~~~~ 171 (230)
T d1ko3a_ 120 PTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPS-------ASVLYGGCAIYE 171 (230)
T ss_dssp CSEECCSCCSTTCEEEETTEEEECCCSSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred cccccccccccccEEEeCCEEEEEeCCCCCCCcceeeccc-------CCcccccceecc
Confidence 21 123456677899999988888889999999988753 369999997543
|
| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Glyoxalase II (hydroxyacylglutathione hydrolase) domain: Glyoxalase II (hydroxyacylglutathione hydrolase) species: Salmonella typhimurium [TaxId: 90371]
Probab=98.46 E-value=1.1e-07 Score=102.07 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=72.2
Q ss_pred cEEEecCCc---------CCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHHHHhhccCCCceEEeCCCce
Q 001045 48 RFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIP 115 (1176)
Q Consensus 48 ~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~ 115 (1176)
.++||++.. ....+.+||+||.|.||++|+..+ +....+|++.... .....+.+..|+.
T Consensus 24 avvIDPg~~~~il~~i~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~~~~~~---------~~~~~~~l~dgd~ 94 (251)
T d2qeda1 24 CVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQ---------DKGATHLVGDGDT 94 (251)
T ss_dssp EEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCEEEECGGGG---------GGTCSEECCTTCE
T ss_pred EEEEcCCccHHHHHHHHHcCCceeEEEeCCCcccccchhhhHHHhhhcceeccccccc---------ccccceeeeccce
Confidence 589999732 124688999999999999999763 2345566654331 1123467888999
Q ss_pred EEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 116 VLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 116 ~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.+|+.+++.+.+ ||.+|+++|+++ ..++|||+-+.
T Consensus 95 i~~g~~~~~vi~TPGHT~g~v~~~~~---------~~lftGDtLF~ 131 (251)
T d2qeda1 95 IRVLGEKFTLFATPGHTLGHVCYFSR---------PYLFCGDTLFS 131 (251)
T ss_dssp EEETTEEEEEEECCSSSTTCEEEEET---------TEEEEETTEET
T ss_pred eeecCceEEEEECCCCCCCcEEEecc---------ceeeecCceee
Confidence 9999999999999 999999999863 38999997544
|
| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]
Probab=98.36 E-value=2.4e-07 Score=96.00 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=84.3
Q ss_pred CeeEe-CCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhccC
Q 001045 40 PSKHV-PNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNIN 103 (1176)
Q Consensus 40 ~~~~i-pg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~~ 103 (1176)
++.++ .+..++||.+.. ...++++|++||.|.||++|+..+. ...++|+++.+...+......
T Consensus 29 ~~~i~~~~~~iliD~g~~~~~~~~l~~~~~~~~~~~i~~vi~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~- 107 (219)
T d1m2xa_ 29 AVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKP- 107 (219)
T ss_dssp EEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHHTTCEEEEEHHHHHHHHHTTCC-
T ss_pred EEEEEECCEEEEEECCCCHHHHHHHHHHHHhccCCceeEEEeCCCCccccCcHHHHHhcCCCeecchhhHhHhhhhccc-
Confidence 34443 555789998621 1256999999999999999998754 367999999999888755432
Q ss_pred CCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 104 PKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 104 ~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.....+..+..+.+++..+.++. .+|.+++.++.+.. .+++++||+-+..
T Consensus 108 -~~~~~~~~~~~i~~g~~~~~~~~~~~~ht~~~~~~~~~~-------~~~l~~gD~~~~~ 159 (219)
T d1m2xa_ 108 -RAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPK-------EKVLVGGCIIKSA 159 (219)
T ss_dssp -CCSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEETT-------TTEEEEETTSCCT
T ss_pred -ceeecccCCCEEEECCEeEEeeeecCccccCceeeeccc-------cceeecccccccC
Confidence 23567778888999998877765 46899998877753 4699999975543
|
| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Pseudomonas aeruginosa, IMP-1 [TaxId: 287]
Probab=98.31 E-value=1.6e-07 Score=98.29 Aligned_cols=109 Identities=22% Similarity=0.170 Sum_probs=76.5
Q ss_pred eeE-eCCccEEEecCC-------------cCCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhccCCC
Q 001045 41 SKH-VPNTRFLIDAFR-------------YAADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 41 ~~~-ipg~~~liD~~~-------------~~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
+.+ -.+..++||.+. ....+|++|++||.|.||++|+..+. ...++|+++.+...+.........
T Consensus 34 ~~i~~~~~~~liDt~~~~~~~~~~~~~i~~~~~~i~~vi~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (220)
T d1jjta_ 34 LVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQAT 113 (220)
T ss_dssp EEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHTTCCEEEEHHHHHHHHHTTCCCCS
T ss_pred EEEEECCEEEEEeCCCCHHHHHHHHHHHHhcCCCeEEEEECCccccccchHHHHHhcCCCeeechhhhhhhhhccccccc
Confidence 444 466678999851 12347999999999999999998654 378999999999998865443221
Q ss_pred ceEEeCCCceEEECC--EEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 106 FIYPLPIKIPVLIDG--CEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~--~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
....+..+.+++ +.+..+.-+|.+|++.+++.. .+++++||+-.
T Consensus 114 ---~~~~~~~~~~~~~~~~~~~~~pgHt~g~~~~~~~~-------~~vlf~GD~~~ 159 (220)
T d1jjta_ 114 ---NSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE-------RKILFGGCFIK 159 (220)
T ss_dssp ---EEECSSCCEEETTTEEEECCCCSSSTTCCEEEETT-------TTEEEEETTCC
T ss_pred ---ccccCceEEECCcEEEEEEeCCCCCcccccccccc-------ccccccCceec
Confidence 122344444543 444444569999999888853 47999999743
|
| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Zn metallo-beta-lactamase domain: Zn metallo-beta-lactamase species: Bacteroides fragilis [TaxId: 817]
Probab=98.26 E-value=3.8e-07 Score=95.45 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=79.9
Q ss_pred eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhccCCCceE
Q 001045 44 VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNINPKFIY 108 (1176)
Q Consensus 44 ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~~~~~i~ 108 (1176)
-.+..++||.+.. ...++++||+||.|.||+||+..+. ...++|+++.+...+...... ....
T Consensus 42 ~~~~~iliD~g~~~~~~~~l~~~i~~~~~~~i~~vi~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 119 (230)
T d1znba_ 42 NNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLP--VPEH 119 (230)
T ss_dssp ETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHTTCC--CCSE
T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHhcCCcceEEEECCCcccccCcHHHHhhhhccccccchhhhhhhhcccc--ccee
Confidence 3667789998621 1246899999999999999998754 367899999998777654322 2234
Q ss_pred EeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 109 PLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 109 ~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.+..+..+.+++..+.++.. +|.++.+.+.+.. .+++|+||+-+.
T Consensus 120 ~~~~~~~i~~g~~~~~~~~~~~~h~~~~~~~~~~~-------~~vlf~GD~~~~ 166 (230)
T d1znba_ 120 GFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPT-------ENILFGGCMLKD 166 (230)
T ss_dssp EESSEEEEEETTEEEEEECCCCSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred ecCCCcEEEECCEEEEEEEeecccccccccccccc-------ccccccCCEecC
Confidence 56677788999999988876 5678877766642 469999997544
|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: ROO N-terminal domain-like domain: ROO-like flavoprotein TM0755, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=2.6e-06 Score=90.07 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred CeeE-eCCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccC----CCCceEEeCHHHHHHHHHhh
Q 001045 40 PSKH-VPNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T~~ll~~~l 100 (1176)
+|++ -.+..++||.+. ....+|++|++||.|.||+||+..+ .....+|+++.+..++....
T Consensus 42 ~yLI~~~~~~vLIDtG~~~~~~~~~~~l~~~~~~~~I~~IilTH~H~DH~Gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 121 (250)
T d1vmea2 42 AYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGFY 121 (250)
T ss_dssp EEEEECSSCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEeCCChhHHHHHHHHHHhhCCcccccEEEECCCChhhhchHHHHHHhcCcceEEEechhhhhcccccc
Confidence 5666 466689999972 1236799999999999999999764 23578999999999988766
Q ss_pred ccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 101 NINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 101 ~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
... ....+..++.+.+++.++.++++ .|..++..+. + ..++++||...
T Consensus 122 ~~~--~~~~~~~g~~~~l~~~~l~~i~tP~~h~~~~~~~~-~--------~~~l~~gd~~~ 171 (250)
T d1vmea2 122 GIK--DVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTY-L--------DGILFSCDVGG 171 (250)
T ss_dssp CCC--CCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEE-E--------TTEEEEETTTC
T ss_pred ccc--cccccccceeEeeccceeEEEecCCccccCceeEE-e--------cceEEeccccc
Confidence 543 34567788899999988888887 3666665443 2 24899999743
|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Alkylsulfatase-like domain: Alkylsulfatase SdsA1 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.03 E-value=4e-06 Score=98.21 Aligned_cols=109 Identities=10% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCccEEEecCC---------------cCCCCccEEEeccCChhhhCCcccCCC-------CceEEeCHHHHHHHHHh---
Q 001045 45 PNTRFLIDAFR---------------YAADFSVSYFLSHFHSDHYTGLSPSWS-------KGIIFCSEITSRLLSQI--- 99 (1176)
Q Consensus 45 pg~~~liD~~~---------------~~~~~i~avfITHaH~DHiggL~~l~~-------~~pIY~s~~T~~ll~~~--- 99 (1176)
.+.-++||++- ....+|.+|++||.|.||+||...+.. ..+||+++...+.+...
T Consensus 112 ddG~iVIDtg~s~e~a~~~l~~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~~~~IiA~~~~~~~~~~~~~~ 191 (505)
T d2cfua2 112 DSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVL 191 (505)
T ss_dssp SSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHHC---CT
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhHHHHhhhhhhccCCceEEechHHHHHHHhhchh
Confidence 34468899961 223579999999999999999987642 56899988776654211
Q ss_pred ------------hcc--C-----------------------CCceEEeCCCceEEECCEEEEEEec-C-CCcCceEEEEE
Q 001045 100 ------------LNI--N-----------------------PKFIYPLPIKIPVLIDGCEVVLVGA-N-HCPGAVQFLFK 140 (1176)
Q Consensus 100 ------------l~~--~-----------------------~~~i~~l~~~~~~~i~~~~Vt~~~a-~-H~pGS~~flie 140 (1176)
++. + +......+.+..+.+++.++.++.+ | |.||.++|++.
T Consensus 192 ~~~~~~rr~~~q~g~~L~~~~~~~~~~~lg~~~~~g~~~~~~p~~~~~~~~~~l~igG~~ie~i~tpG~HTp~~l~~y~P 271 (505)
T d2cfua2 192 AGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLP 271 (505)
T ss_dssp THHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSSSBEEEEET
T ss_pred hhHHHHHHHHHHHHhhccccchhccccccccccCcCCcccCCCCeEEeccceEEeeCcEEEEEEECCCCCCccceEEEec
Confidence 110 0 0012233445678899999998877 4 99999998875
Q ss_pred EcCCCCcccEEEEECCCCCc
Q 001045 141 VPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 141 ~~~~~G~~~~IlYTGDfr~~ 160 (1176)
. .++|++||.-+.
T Consensus 272 e-------~kvL~sGD~v~~ 284 (505)
T d2cfua2 272 R-------QKALLMAENVVG 284 (505)
T ss_dssp T-------TTEEECTTTSCS
T ss_pred C-------CCEEEEeccccc
Confidence 4 579999997543
|
| >d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: Adenylation domain of NAD+-dependent DNA ligase domain: Adenylation domain of NAD+-dependent DNA ligase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.06 E-value=0.00026 Score=77.49 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=94.9
Q ss_pred cCceEEEEEecceeEEEEEEeeCCeEEEEcCC----CccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRN----GDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~----g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
....|.||+|+||.-+.+.+..|.-++++||+ |+|+|.....+.. ++.. .+.+..+.+.||++.-. .
T Consensus 104 ~~~~~~v~~KlDG~si~l~Y~~G~l~~a~TRGdG~~GeDIT~~~~~i~~-iP~~-~~~~~~~~irGE~~~~~-------~ 174 (312)
T d1b04a_ 104 GEAAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRS-LPLR-LKEPVSLEARGEAFMPK-------A 174 (312)
T ss_dssp SSCCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTT-SCSB-CSSCCCEEEEEEEECCH-------H
T ss_pred cccceeeeeeeecceeeeeecccceEEEeecCCcchhhhHHHHHhhhcC-CCCc-cCCCcccccccceeeec-------c
Confidence 45689999999999999999644459999998 8898865433321 2211 12356789999999832 2
Q ss_pred ChHHHhhh-------------------hcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1053 SFQELSSR-------------------ERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1053 pFq~L~~R-------------------~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
.|..+... .|.. +. ......+++|+++.+.+..+ .......+..+.|..+- -..
T Consensus 175 ~f~~~~~~~~~~~~~~f~NpRN~aAG~l~~k-~~---~~~~~~~l~~~~y~~~~~~~--~~~~~~~e~l~~L~~~g-f~~ 247 (312)
T d1b04a_ 175 SFLRLNEERKARGEELFANPRNAAAGSLRQL-DP---KVAASRQLDLFVYGLADAEA--LGIASHSEALDYLQALG-FKV 247 (312)
T ss_dssp HHHHHHHHHHHC--CCCSCHHHHHHHHHHSS-CH---HHHHHTCCEEEEEEETTTTT--TTCCBHHHHHHHHHHTT-CCC
T ss_pred hhhhhhhhhhhccccccchhhHHhhcccccc-cc---hhhhhhhhhheeeecccccc--ccchhHHHHHHHHHhcC-ccc
Confidence 34433221 0110 00 01123468899998865443 33456778888888874 111
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC----CCc--eEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS----SCE--GIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~----g~E--GlmvK~ld 1162 (1176)
...... ..+.+++.+++++..+. .+| |||||--+
T Consensus 248 ~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~Y~iDGIVikvn~ 287 (312)
T d1b04a_ 248 NPERRR---------------CANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDS 287 (312)
T ss_dssp CTTCEE---------------ESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECB
T ss_pred ccceEE---------------ECCHHHHHHHHHHHHhhhhcCCCCCCeEEEEEcC
Confidence 111111 24577888888776532 233 99999644
|
| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Ava3068-like domain: Hypothetical protein Ava3068 species: Anabaena variabilis [TaxId: 1172]
Probab=97.05 E-value=8.4e-05 Score=75.99 Aligned_cols=103 Identities=21% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCeeE-eCCccEEEecCCcCC---------CCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCCC
Q 001045 38 FPPSKH-VPNTRFLIDAFRYAA---------DFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~~---------~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
..++.+ .++..++||+..... .++++|++||. ||++++..+. ...+||+++.+...+. ..+.
T Consensus 23 ~n~~~v~~~~g~vlIDp~~~~~~~~~~l~~~g~i~~vi~TH~--DH~g~~~~~~~~~~a~i~~~~~~~~~~~----~~pd 96 (200)
T d2p97a1 23 FNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENFP----IYCD 96 (200)
T ss_dssp EEEEEECCTTCCEEESCCCCCHHHHHHHHHTTCCSEEECSSG--GGCTTHHHHHHHSCCEEEEEGGGTTSCS----SCCS
T ss_pred cEEEEEEECCeeEEEECCcChHHHHHHHHhcCCccEEEecCc--cccchHHHHHHhcCceEEeecccccccc----ccce
Confidence 345665 677889999963321 47999999965 9999987542 3789999987643221 1111
Q ss_pred ceEEeCCCceEEECCEEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
..+..+.. ..++++|..+| || .+|.+.++ .. .++|+|||+-
T Consensus 97 --~~~~~~~~-~~~~~~vi~~p-GH~~~~~~~~~-~~-------~~~Lf~GD~l 138 (200)
T d2p97a1 97 --RWLSDGDE-LVPGLKVMELQ-GSKTPGELALL-LE-------ETTLITGDLV 138 (200)
T ss_dssp --EEECTTCB-SSTTEEEEEEC-SSSSTTEEEEE-ET-------TTEEEECSSE
T ss_pred --Eecccccc-cceeEEEEEeC-CcCCCCEeEEe-cc-------cceEEECCEe
Confidence 12222221 12456666665 67 66665544 31 3699999973
|
| >d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: Adenylation domain of NAD+-dependent DNA ligase domain: Adenylation domain of NAD+-dependent DNA ligase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.01 E-value=0.0043 Score=67.43 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=93.0
Q ss_pred CceEEEEEecceeEEEEEEeeCCe-EEEEcCC----CccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRN----GDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR~----g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
+..|+||+|+||.-+.+.+. +|. ++++||. |+|+|+....+.. ++..+ +.+..+.+=||++.-. .
T Consensus 108 ~~~~~~~~KiDG~si~l~Y~-~G~l~~a~TRGdG~~GeDiT~~~~~i~~-ip~~l-~~~~~~~iRGEl~~~~-------~ 177 (313)
T d1ta8a_ 108 PVAYCCELKIDGLAISLRYE-NGVFVRGATRGDGTVGENITENLRTVRS-VPMRL-TEPISVEVRGECYMPK-------Q 177 (313)
T ss_dssp CCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBC-SSCCCEEEEEEEECCH-------H
T ss_pred ccceeeeeecccceEEEEec-CCcEEEeeecccchHHHHHHHhhhhhcc-ccccc-cCCcceeeeeEEEEec-------c
Confidence 45799999999999999995 665 7999999 9999865432221 12111 2356799999999732 2
Q ss_pred ChHHHhhhh-cCCCC---c--h-----hh----hcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1053 SFQELSSRE-RGGKD---S--V-----IT----IKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1053 pFq~L~~R~-r~~~~---~--~-----i~----~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
.|..+.... .+... . + +. .......+.|++|++.+..+.. .....+....|.+.. -......
T Consensus 178 ~f~~~n~~~~~~~~~~f~N~RN~vaG~l~~k~~~~~~~~~l~f~~y~v~~~~~~~--~~~~~~~~~~l~~~g-~~~~~~~ 254 (313)
T d1ta8a_ 178 SFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIG-FRTNPER 254 (313)
T ss_dssp HHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTT-CCCCTTC
T ss_pred chhhhHHHHHHhcccccccchhhhcccchhcccchhhhccccceeeecceecccc--cchhHHHhhhhhhcC-CcCCCCe
Confidence 454332211 00000 0 0 00 0112345889999987655433 345666677777654 2211111
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC----CCc--eEEEecCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS----SCE--GIIVKSLD 1162 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~----g~E--GlmvK~ld 1162 (1176)
.. ..+.+++.++++...+. .+| |||||--+
T Consensus 255 ~~---------------~~~~~ei~~~~~~~~~~R~~l~YeIDGIVikvn~ 290 (313)
T d1ta8a_ 255 QL---------------CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 290 (313)
T ss_dssp EE---------------ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESB
T ss_pred EE---------------eCCHHHHHHHHHHHHHhhhcCCCCCceEEEEEeC
Confidence 11 24678888888777543 344 99999643
|
| >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: Adenylation domain of NAD+-dependent DNA ligase domain: Adenylation domain of NAD+-dependent DNA ligase species: Thermus filiformis [TaxId: 276]
Probab=96.52 E-value=0.0032 Score=68.61 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=101.3
Q ss_pred cCCCCcc-cCChhHHH---Hhc-----cCceEEEEEecceeEEEEEEeeCCeEEEEcCC----CccCCCCchhHHHHHHh
Q 001045 959 KPMLAKI-TNGVPQVL---KLF-----QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRN----GDETTSRFPDLISIINE 1025 (1176)
Q Consensus 959 ~PMLA~~-~~~~~~~~---~~~-----~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~----g~d~T~~ypdl~~~l~~ 1025 (1176)
.|||.-. +.+.+++. +++ ....|+||+|+||.=+ +.+ .+| +..+||. |+|+|..+..|.. ++.
T Consensus 80 ~pMlSL~k~~~~~~~~~~~~r~~~~~~~~~~~~ve~KlDG~Si-L~y-~~G-v~~~TRGdG~~GeDiT~~~~~I~~-iP~ 155 (314)
T d1dgsa3 80 TRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSV-LYY-EEG-VWSTGSGDGEVGEEVTQNLLTIPT-IPR 155 (314)
T ss_dssp SCCCCCCEECSHHHHHHHHHHTTSSSCSCCEEEEEECCSCEEE-EEE-ETT-EEEEEECSSSEEEBCTGGGTSSTT-SCS
T ss_pred eeeeccccccchhhhhhhhhhhhccccccchhhhhhccCcceE-EEe-cCC-EeEEeecCCceehhhHhhHhhhcC-cch
Confidence 3898653 33444432 332 2345999999999998 666 355 8999997 7899987654432 222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-------------------hcCCCCchhhhcccccceEEEEEEee
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-------------------ERGGKDSVITIKSVKVDICVFVFDIM 1086 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-------------------~r~~~~~~i~~~~~~~~v~~~vFDiL 1086 (1176)
.+...+..+.+=||++.- ...|..+... .|. .+.. ......+.++++++.
T Consensus 156 ~l~~~~~~l~IRGEl~i~-------~~~F~~~n~~~~~~~~~~f~NpRN~aaG~l~~-~~~~---~~~~~~l~~~~~~~~ 224 (314)
T d1dgsa3 156 RLKGVPDRLEVRGEVYMP-------IEAFLRLNEELEERGEKVFKNPRNAAAGSLRQ-KDPR---VTAKRGLRATFYALG 224 (314)
T ss_dssp BCSSCCSEEEEEEEEECC-------HHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSC-SSHH---HHHHSCCEEECCCBC
T ss_pred hccCCCccceeeeeEEee-------cchHHHHHHHHHHhcCCcccccchhhhhhhhc-ccch---hhhhccccceeeecc
Confidence 222235678999999973 2345444221 011 0111 112334667777765
Q ss_pred eeCCc-ccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCC------CceEEEe
Q 001045 1087 FANGE-QLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS------CEGIIVK 1159 (1176)
Q Consensus 1087 ~lnG~-~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g------~EGlmvK 1159 (1176)
+..+. .-......+....|.... -........ ..+.+++.+++++..+.+ .-|||||
T Consensus 225 ~~~~~~~~~~~~~~e~~~~l~~~g-~~~~~~~~~---------------~~~~e~l~~~~~~~~~~R~~l~y~iDGiVik 288 (314)
T d1dgsa3 225 LGLGLEESGLKSQYELLLWLKEKG-FPVEHCYEK---------------ALGAEGVEEVYRRGLAQRHALPFEADGVVLK 288 (314)
T ss_dssp TTTTTTSCCCCBHHHHHHHHHHTT-CCCCSCEEE---------------EEHHHHHHHHHHHHHHTTTTSSSCCCEEEEE
T ss_pred ccccccCCCcccHHHHHHhhhccc-ccCCcceEE---------------ECCHHHHHHHHHHHHHhhhcCCCCCCceEEE
Confidence 44332 223456788888888876 232222211 235788999998876543 3499999
Q ss_pred cCC
Q 001045 1160 SLD 1162 (1176)
Q Consensus 1160 ~ld 1162 (1176)
--+
T Consensus 289 vnd 291 (314)
T d1dgsa3 289 LDD 291 (314)
T ss_dssp ESB
T ss_pred EeC
Confidence 754
|
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ATP-dependent DNA ligase DNA-binding domain superfamily: ATP-dependent DNA ligase DNA-binding domain family: ATP-dependent DNA ligase DNA-binding domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.011 Score=62.87 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhh---cchhhHHHHHHHHhhc-------cccCcchhhHHHHHHHh
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCS---CREKEMKFLVRTLVRN-------LRIGAMMRTILPALAQA 892 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~---~~~~E~k~LvRiIlk~-------LRiG~~~~tvl~aLa~A 892 (1176)
.++...++-+.+++|.+.+ +..+|.++|.++|+. .+|.|.-+.++++++. ..+|++++++.+|++.+
T Consensus 24 ~~vpf~~la~~f~~ie~ts---~rl~k~~iL~~~f~~~~~~~p~dl~~~vyL~~g~l~P~~e~~elgige~~l~kai~e~ 100 (272)
T d1x9na1 24 QKVPYLAVARTFEKIEEVS---ARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQA 100 (272)
T ss_dssp SCCBHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhCCcCcchhchhcccCHHHHHHHHHHH
Confidence 5567788888899998654 577899999999987 4789999999999986 46799999999999999
Q ss_pred hccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHh
Q 001045 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLM 939 (1176)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~ 939 (1176)
++.+. ..+++.|+...|++.++..++
T Consensus 101 ~G~~~---------------------~~i~~~~~~~GDlG~va~~~~ 126 (272)
T d1x9na1 101 TGRQL---------------------ESVRAEAAEKGDVGLVAENSR 126 (272)
T ss_dssp HTCCH---------------------HHHHHHHHHHTCHHHHTCC--
T ss_pred HCcCH---------------------HHHHHHHHHcCCHHHHHHHHh
Confidence 98775 567889999999999886554
|
| >d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: RNA ligase domain: RNA editing ligase MP52 species: Trypanosoma brucei [TaxId: 5691]
Probab=95.38 E-value=0.021 Score=59.10 Aligned_cols=127 Identities=15% Similarity=0.229 Sum_probs=73.6
Q ss_pred ccCceEEEEEecceeEEEEEEe---eCCeEEEEcCCCccCCC-Cc-------hhHHHHHHhh---c-----CCCCCCeEE
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKL---VDGTVRIFSRNGDETTS-RF-------PDLISIINEF---C-----KPAAGTFIL 1036 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~---~~g~V~ifSR~g~d~T~-~y-------pdl~~~l~~~---~-----~~~~~~~IL 1036 (1176)
+.++.|.+.+|.||-..-+++. +++.|++=+|++-.-.. .| +++.+.++.+ + .....++++
T Consensus 26 l~~~ewVa~EKIHGaNFsii~~~~~dg~~V~~aKR~~~l~~~e~Ffgy~~i~~~l~~~~~~l~~~l~~~~~v~~~~~~vv 105 (265)
T d1xdna_ 26 LAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVL 105 (265)
T ss_dssp GGGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEE
T ss_pred cccceEEEEEeecCccEEEEEeecCCCcEEEEeecccccCCcccccchhhHHHHHHHHHHHHHHHHHhhhccCCccEEEE
Confidence 3468999999999998888873 24679999999865332 22 3344433332 1 134668999
Q ss_pred EEEEEEEecCCCCcccC---hHHHhh---------hhcCCCCchhhhcccccceEEEEEEeeeeCC---cccccCCHHHH
Q 001045 1037 DAEVVAIDRKNGCKIMS---FQELSS---------RERGGKDSVITIKSVKVDICVFVFDIMFANG---EQLLGYTLRQR 1101 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~p---Fq~L~~---------R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG---~~Ll~~Pl~eR 1101 (1176)
=||++.+--.+. .+.. .+.+++ +..+... -.....+.|+||||++..+ ++..-+++.+=
T Consensus 106 yGELfGg~Y~hp-~v~~~~~~~~~~~g~~~~~~~~~iQk~~~-----v~Y~p~l~FyAFDI~~~~~~~~~~~~fl~~d~~ 179 (265)
T d1xdna_ 106 NGELFGAKYKHP-LVPKSEKWCTLPNGKKFPIAGVQIQREPF-----PQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEF 179 (265)
T ss_dssp EEEEEEEECCCT-TSCCCCCEEECTTSCEEEGGGCCSCCCSS-----CCCEEEEEEEEEEEEEESSCCGGGEEECCHHHH
T ss_pred EEEecccccCCC-cccccccccccccCccccccceeeccccc-----cccCCCccEEEEEEEeccCCCcceeeeccHHHH
Confidence 999999432210 1111 111111 1111000 0012248999999998865 34456777776
Q ss_pred HHHHHHh
Q 001045 1102 RKYLKDL 1108 (1176)
Q Consensus 1102 r~lL~~~ 1108 (1176)
.+...+.
T Consensus 180 ~e~~~~~ 186 (265)
T d1xdna_ 180 VEFSSKV 186 (265)
T ss_dssp HHHHHTS
T ss_pred HHHHhhc
Confidence 6665543
|
| >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TAP-C domain-like domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.06 E-value=0.014 Score=44.96 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=35.2
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDN 631 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1176)
..+-|+||+.|-. ++.+.|...|+.+.+|++.||+.||++
T Consensus 5 ~~~lI~qF~~iTg---~~~~~A~~~Le~~~w~Le~Ai~~yfe~ 44 (46)
T d1v92a_ 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 4578999999854 468899999999999999999999974
|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Rhomboid family protein At3g58460 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.03 E-value=0.71 Score=38.59 Aligned_cols=44 Identities=9% Similarity=0.220 Sum_probs=35.8
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCC
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGD 635 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1176)
..++.|.|++.| + =.|+.|+..|+++.|||++|+|.-++++-.+
T Consensus 28 ~~ee~i~~L~~M---G-F~~~~a~~AL~~~~~n~e~A~~~Ll~~~~ps 71 (73)
T d1vg5a_ 28 ASEEQIQKLVAM---G-FDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp CCHHHHHHHHTT---T-CCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred cCHHHHHHHHHh---C-CCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 346677777766 3 4699999999999999999999999976544
|