Citrus Sinensis ID: 001048
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1174 | 2.2.26 [Sep-21-2011] | |||||||
| Q5W274 | 1447 | Pleiotropic drug resistan | N/A | no | 0.990 | 0.803 | 0.671 | 0.0 | |
| Q9LFH0 | 1450 | ABC transporter G family | yes | no | 0.991 | 0.802 | 0.636 | 0.0 | |
| Q9ZUT8 | 1413 | ABC transporter G family | no | no | 0.990 | 0.823 | 0.629 | 0.0 | |
| Q7PC81 | 1390 | ABC transporter G family | no | no | 0.971 | 0.820 | 0.623 | 0.0 | |
| Q7PC83 | 1397 | ABC transporter G family | no | no | 0.977 | 0.821 | 0.635 | 0.0 | |
| Q8GZ52 | 1400 | ABC transporter G family | no | no | 0.975 | 0.817 | 0.636 | 0.0 | |
| Q7PC82 | 1392 | ABC transporter G family | no | no | 0.970 | 0.818 | 0.619 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.991 | 0.792 | 0.562 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.994 | 0.800 | 0.535 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.994 | 0.800 | 0.535 | 0.0 |
| >sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1693 bits (4385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/1173 (67%), Positives = 957/1173 (81%), Gaps = 10/1173 (0%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
++ + EK AG+ PDPD+D YMKAIS EG + +LQTDYILKILGLDICADT+VGD MRRG+
Sbjct: 285 DLSRREKEAGVVPDPDIDTYMKAISIEGQKKNLQTDYILKILGLDICADTLVGDAMRRGI 344
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGELIVGP +ALFMDEISNGLDSSTT+QIV+ L+ L HITDAT L+SLLQP
Sbjct: 345 SGGQKKRLTTGELIVGPIKALFMDEISNGLDSSTTYQIVACLQQLAHITDATILVSLLQP 404
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+ILMAEGKI+YHGP + + +FFE CGF+CP+RKGVADFLQEV S+KDQAQ
Sbjct: 405 APETFDLFDDIILMAEGKILYHGPRNSALEFFESCGFKCPERKGVADFLQEVTSKKDQAQ 464
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YWH Y +VSVD KFK +EEL+ ++ S H+N+I+F+ YSL KWEL
Sbjct: 465 YWHGTKETYKFVSVDMLSRKFKESPYRKKLNEELSVPYDNSRSHRNSITFRDYSLPKWEL 524
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
+ C +REFLLMKRNS +Y+FK+ QL IIAS+TMTVFLR+ + D++HAN YLGALFYAL
Sbjct: 525 FRACMSREFLLMKRNSFIYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYAL 584
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
+IL+VDGFPE++MTI+RLAVFYK +LCFYPAWAY IPA+ILK+PLSLLES +W S+TYY
Sbjct: 585 IILLVDGFPELSMTITRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYY 644
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IGFSPE GRF RQ LL FAVH+TSIS+FR +AS+ RT+ S A G ++IL +L F GFI
Sbjct: 645 VIGFSPEAGRFFRQLLLLFAVHMTSISMFRFLASVCRTIVASTAAGGLSILFVLCFSGFI 704
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IP+ SMP WL+WGFW+ PLTYGEIGL VNEFLAPRW+K + NT+ G + LESRGLNFD
Sbjct: 705 IPRPSMPIWLKWGFWISPLTYGEIGLAVNEFLAPRWQKTLPTNTSIGNEVLESRGLNFDG 764
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRS 541
FYWIS+ AL GFT+LFN FTLALTFLK PG SR +IS +KY +++ D + D+ +
Sbjct: 765 YFYWISVCALFGFTILFNIGFTLALTFLKAPG-SRAIISTDKYSQIEGSSDSI--DKADA 821
Query: 542 PTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQL 601
++ + + G +M+LPFEPL++ F+D++YYVD P+AM + GF Q RLQL
Sbjct: 822 AENSKATMDSHERAG-------RMVLPFEPLSLVFQDVQYYVDTPAAMTELGFTQKRLQL 874
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
LSDITG RPGILTALMGVSGAGKTTL+DVL+GRKT G +EG+I++GGYPKVQ TFAR+S
Sbjct: 875 LSDITGALRPGILTALMGVSGAGKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVS 934
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
GYCEQ DIHSP ITVEES++FSAWLRL QIDSKTK EFV EV++TIELDGIK LVG+P
Sbjct: 935 GYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTKYEFVKEVIETIELDGIKGMLVGMP 994
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDAR+AA VMRAVKNV +TGRT+VCT
Sbjct: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCT 1054
Query: 782 IHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWM 841
IHQPSIDIFEAFD+L+L+K GGR+IY+G LG++SCK+IEYFE I V KIK+N+NPATWM
Sbjct: 1055 IHQPSIDIFEAFDELILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWM 1114
Query: 842 LEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQF 901
LEV+S S E + +DFA++Y+ S L++ N+ELVK+LS P GSKDLHFPT F QNGW QF
Sbjct: 1115 LEVTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQF 1174
Query: 902 KACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961
K C WK SYWR+PSYNL+R + SL+ G+LFW KGKK+ NQQ VF++ GA+F+A
Sbjct: 1175 KTCFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAV 1234
Query: 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITY 1021
+F GI N S V+P VTTER+VLYRERFAGMY+ WAY+ AQV +E+PYL QA+ + +ITY
Sbjct: 1235 IFCGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITY 1294
Query: 1022 PMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGF 1081
PMIGY+WS YK+FW FY MFC LLYF Y+GM++VS+TP+ VA+IL SSFY+M NLF GF
Sbjct: 1295 PMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGF 1354
Query: 1082 TIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFDH 1141
+PK QIPKWW W YYL PTSW L GML+SQYGDI+KEI+ F + KTV+AFL DYFGF H
Sbjct: 1355 LMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHH 1414
Query: 1142 DFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
+ L +V VLI +P++FASLFA+FIG+LNFQRR
Sbjct: 1415 NQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1615 bits (4182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1175 (63%), Positives = 926/1175 (78%), Gaps = 11/1175 (0%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV K EK GI PD +VDAYMKAIS EGL+ SLQTDYILKILGLDICA+ ++GD MRRG
Sbjct: 286 MEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRG 345
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST FQIV L+ HI+ AT L+SLLQ
Sbjct: 346 ISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQ 405
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPE++DLFDD++LMA+G+IVYHGP FFE CGFRCP+RKGVADFLQEVIS+KDQA
Sbjct: 406 PAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQA 465
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW +D PYS+VSV+ KFK +G ++ L++ +++S+ HK+A+SF YSL WE
Sbjct: 466 QYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWE 525
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L C +RE+LLMKRN +Y+FK+ QLV+ A +TMTVF+R+ + +DIIH N+Y+ ALF+A
Sbjct: 526 LFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFA 585
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+IL+VDGFPE++MT RLAVFYK + LCFYPAWAYAIPA++LKVPLS ES VWT L+Y
Sbjct: 586 LIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSY 645
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG++PE RF +QF+L FAVH TSIS+FR +A+IF+TV S G+ IL +F GF
Sbjct: 646 YVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGF 705
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+IP SMP+WL+WGFW PL+YGEIGL+VNEFLAPRW ++ N T G L++RG++++
Sbjct: 706 VIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFTLGRTILQTRGMDYN 765
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQ-DQKDCVGSDRD 539
YW+S+ AL+GFT+LFN +FTLALTFLK P SR +IS +K ELQ +K S
Sbjct: 766 GYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSSVR 825
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+ TD+P+K KM+LPF+PLTVTF+DL Y+VD+P MR G++Q +L
Sbjct: 826 KKTTDSPVKTE----------EEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKL 875
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
QLLSDITG FRPGILTALMGVSGAGKTTL+DVL+GRKT G IEGDIRI G+PKVQ TFAR
Sbjct: 876 QLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFAR 935
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+SGYCEQ DIHSPNITVEES+++SAWLRL+ +ID+ TK +FV +VL+TIELD IKDSLVG
Sbjct: 936 VSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVG 995
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA VMRAVKNV +TGRT+V
Sbjct: 996 VTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 1055
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+LVL+K GGR+IY GPLGQHS +IEYFE +P + KIKDN+NPAT
Sbjct: 1056 CTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPAT 1115
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WML+VSS S+E +LGVDFA+IY +S LY+ N ELVKQLS P GS D+ F F Q+ W
Sbjct: 1116 WMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWG 1175
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
QFK+ +WK NLSYWR+PSYNL+R++ T SL+FG LFW++G+ + QQ +F + GA++
Sbjct: 1176 QFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYG 1235
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
+F GI NC+ + TER V+YRERFAGMYS AY+ QV+ E+PY+FIQA +VI+
Sbjct: 1236 LVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIV 1295
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
TYPMIG++ S YK+FWS Y MFC+LL FNY+ M +VS+TPN VA+IL S FY NLF
Sbjct: 1296 TYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFS 1355
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
GF IP+ Q+P WW W YYL PTSW L G +SSQYGDI +EI+ FG++ TV+ FL DYFGF
Sbjct: 1356 GFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGF 1415
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L V +V I FPI AS+FA+F+G+LNFQRR
Sbjct: 1416 HHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1600 bits (4143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1174 (62%), Positives = 929/1174 (79%), Gaps = 11/1174 (0%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV K EK GI PDP++DAYMKAIS +GL+ SLQTDYILKILGLDICA+T+VG+ M+RG
Sbjct: 251 MEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRG 310
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST FQI+ L+ + HIT+AT +SLLQ
Sbjct: 311 ISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQ 370
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPE++DLFDD++LMAEGKIVYHGP KFFE CGF+CP+RKGVADFLQEVIS+KDQ
Sbjct: 371 PAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQG 430
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW Q+ P+S+VSVD +FK +G +E L++ ++ S+ HK+A+SF YSL KWE
Sbjct: 431 QYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWE 490
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L + C +REFLLMKRN +Y+FK+ QLV+ A +TMTVF+R+ + +DIIH N+Y+ LF+A
Sbjct: 491 LFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNSYMSCLFFA 550
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
V+L+VDG PE++MT+ RL+VFYK + LCFYPAWAYAIPA++LK+PLS ES VWT LTY
Sbjct: 551 TVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTY 610
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG++PE RF RQF++ FAVH TSIS+FR IA+IF+T + G+ +L+ +F GF
Sbjct: 611 YVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGF 670
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
IP MP WL+WGFWV P++Y EIGL+VNEFLAPRW+K+ N T G LESRGLN+D
Sbjct: 671 AIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYD 730
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDR 540
YW+S+ AL+G T++FN +FTLAL+FLK P SR +IS +K ELQ KD S +
Sbjct: 731 DYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD--SSVKKN 788
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
P D+ +K P KMILPF+PLT+TF+DL YYVD+P M+ G+N+ +LQ
Sbjct: 789 KPLDSSIKTNEDPG---------KMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQ 839
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LLS+ITG FRPG+LTALMG+SGAGKTTL+DVL+GRKT G IEG+IRI G+ KVQ TFAR+
Sbjct: 840 LLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARV 899
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSP+ITVEES+++SAWLRL +I+ +TK FV +VL+TIEL+ IKD+LVG+
Sbjct: 900 SGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGV 959
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
GV+GLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAA VMRAVKNV ETGRT+VC
Sbjct: 960 AGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVC 1019
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSI IFEAFD+LVL+K GGR+IY GPLGQHS VIEYF+ IPGV KI+D YNPATW
Sbjct: 1020 TIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATW 1079
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
MLEV+S S+ET+L +DFA+IY ES LY+ N ELVK+LS P GS DLHF F QN WEQ
Sbjct: 1080 MLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQ 1139
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FK+C+WK +LSYWR+PSYNL+RI T S +FG+LFW +GKKI QQ++F +LGA++
Sbjct: 1140 FKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGL 1199
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+F GI NC+ + TER V+YRERFAGMYS +AY+ AQV+ E+PY+FIQ+ +VI+
Sbjct: 1200 VLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVI 1259
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPMIG++ S K+FWS Y MFCNLL FNY+ M ++S+TPN VA+IL S F++ N+F G
Sbjct: 1260 YPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAG 1319
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F IPKPQIPKWW W YY+ PTSW L SSQYGDI ++I+AFG+ KTV++FL+DYFGF
Sbjct: 1320 FLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFH 1379
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L + I+LI FPI A+++A+F+ +LNFQ+R
Sbjct: 1380 HDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1576 bits (4080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/1173 (62%), Positives = 918/1173 (78%), Gaps = 33/1173 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EKL GI PDPD+DAYMKA S EG + +LQTDYILKILGL ICADT VGD R G+
Sbjct: 251 EISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRPGI 310
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQK+RLTTGE+IVGP + LFMDEISNGLDSSTTFQI+S L+ +++ T L+SLLQP
Sbjct: 311 SGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEGTILVSLLQP 370
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDD+ILM EGKI+YHGP + C FFE CGF+CP RK VA+FLQEVISRKDQ Q
Sbjct: 371 APETFELFDDLILMGEGKIIYHGPRDFICSFFEDCGFKCPQRKSVAEFLQEVISRKDQEQ 430
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW +D PY YVS+D FI KFK LGL +EL+++++KS+ K+ + +KYSL+ W++
Sbjct: 431 YWCHRDKPYCYVSIDSFIEKFKKSDLGLQLQDELSKTYDKSQTQKDGLCIRKYSLSNWDM 490
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
K C+ REFLLMKRNS +YVFKS L+ I S+ MTV+LR+ D +HAN +G+LF++L
Sbjct: 491 FKACSRREFLLMKRNSFVYVFKSGLLIFIGSIAMTVYLRTGSTRDSLHANYLMGSLFFSL 550
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
+ L+ DG PE+ +T+SR+AVF K ++L FYPAWAYAIP++ILK+P+S LESF+WT LTYY
Sbjct: 551 IKLLADGLPELTLTVSRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYY 610
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPE GRFIRQ L+ FA+HL+ IS+FRAI ++FR V+ IG+++I++L +FGGFI
Sbjct: 611 VIGYSPEAGRFIRQVLILFALHLSCISMFRAIGAVFRDFDVATTIGSISIVLLSVFGGFI 670
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
+ K SMPSWLEWGFW+ PL+Y EIGLT NEF AP W K+ S N T G Q L++RGLNF +
Sbjct: 671 VRKPSMPSWLEWGFWLSPLSYAEIGLTSNEFFAPMWRKMTSENRTLGEQVLDARGLNFGN 730
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRS 541
YW + GALIGFT+ FN VF LALTFLK +SR ++S++K + ++ + S
Sbjct: 731 QSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHDKNTQSSEKDSKIAS----- 785
Query: 542 PTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQL 601
H K LPFEPLT TF+D++Y+++ P +LQL
Sbjct: 786 --------------------HSKNALPFEPLTFTFQDVQYFIETPQG--------KKLQL 817
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
LSD+TG F+PG+LTALMGVSGAGKTTL+DVLSGRKT G I+G I +GGY KVQ TF+R+S
Sbjct: 818 LSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTRGDIKGQIEVGGYVKVQDTFSRVS 877
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
GYCEQ DIHSPN+TV+ES+ +SAWLRL I S+TK+ VNEVL+TIEL+ IKDSLVG+P
Sbjct: 878 GYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVP 937
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
G++G++ EQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA VMRAVKN+ ETGRTVVCT
Sbjct: 938 GISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCT 997
Query: 782 IHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWM 841
IHQPSIDIFEAFD+L+LMKNGG+IIY+GPLGQHS KVIEYF IPGV K+K+N NPATW+
Sbjct: 998 IHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMSIPGVPKLKENSNPATWI 1057
Query: 842 LEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQF 901
L+++S S E +LGVD A IY ESTL++ENK +++Q SLGS+ L + + Q WEQF
Sbjct: 1058 LDITSKSSEDKLGVDLAHIYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQF 1117
Query: 902 KACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961
KAC+WK +LSYWRNPSYNL RI+F C +L GILF QK K+I NQQD+FN+ G++F+
Sbjct: 1118 KACLWKQHLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMFTVV 1177
Query: 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITY 1021
+F GI NCS VI V TER V YRERF+ MY+PWAYS AQVLVE+PY Q++IYVII Y
Sbjct: 1178 LFSGINNCSTVIFCVATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVY 1237
Query: 1022 PMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGF 1081
PM+GYHWS YK+FWSFY +FC+LL FNY GML+V +TPN+ +A L SSFY+++NLF G+
Sbjct: 1238 PMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGY 1297
Query: 1082 TIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFDH 1141
+PKP IP+WW W YYL PTSWVL G+L+SQYGD++KEI AFG+ K VSAFL+DYFG+ +
Sbjct: 1298 VMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSAFLEDYFGYRY 1357
Query: 1142 DFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
D L +V +VLI FPIL ASLFA+FIG+LNFQ++
Sbjct: 1358 DSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1575 bits (4079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1173 (63%), Positives = 922/1173 (78%), Gaps = 26/1173 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EKL I PDPD+DAYMKAIS EGL+NS+QTDYILKILGLDICADT GD R G+
Sbjct: 251 EISRREKLKEIVPDPDIDAYMKAISVEGLKNSMQTDYILKILGLDICADTRAGDATRPGI 310
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQK+RLTTGE++VGP L MDEISNGLDSSTTFQIVS L+ L HI AT LISLLQP
Sbjct: 311 SGGQKRRLTTGEIVVGPATTLLMDEISNGLDSSTTFQIVSCLQQLAHIAGATILISLLQP 370
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDDVIL+ EGKI+YH P + CKFFEGCGF+CP+RKGVADFLQEV+SRKDQ Q
Sbjct: 371 APETFELFDDVILLGEGKIIYHAPRADICKFFEGCGFKCPERKGVADFLQEVMSRKDQEQ 430
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW + PYSY+SVD FI KF +LG + EEL++ F+KS+ K+++ F+KYSL+KWE+
Sbjct: 431 YWCHRSKPYSYISVDSFIKKFNESNLGFLLKEELSKPFDKSQTRKDSLCFRKYSLSKWEM 490
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
LK C+ RE LLMKRNS +Y+FKS LV A VTMTVFL++ D H N +G++F AL
Sbjct: 491 LKACSRREILLMKRNSFIYLFKSGLLVFNALVTMTVFLQAGATRDARHGNYLMGSMFTAL 550
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
L+ DG PE+ +TISRL VF K +DL FYPAWAYAIP+ IL++PLS+L+SF+WT LTYY
Sbjct: 551 FRLLADGLPELTLTISRLGVFCKQKDLYFYPAWAYAIPSIILRIPLSVLDSFIWTVLTYY 610
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPEVGRF R F++ HL+ IS+FRAIASI RT G +++L+L LFGGF+
Sbjct: 611 VIGYSPEVGRFFRHFIILLTFHLSCISMFRAIASICRTFVACSITGAISVLLLALFGGFV 670
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IPK SMP+WL WGFW+ PL+Y EIGLT NEF +PRW K+ SGN TAG Q L+ RGLNF
Sbjct: 671 IPKSSMPTWLGWGFWLSPLSYAEIGLTANEFFSPRWRKLTSGNITAGEQVLDVRGLNFGR 730
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRS 541
YW + GAL+GF + FNA++TLALT+ P +SR ++S+ K C D
Sbjct: 731 HSYWTAFGALVGFVLFFNALYTLALTYRNNPQRSRAIVSHGK------NSQCSEEDFKPC 784
Query: 542 PTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQL 601
P + +A TG K+ILPF+PLTVTF++++YY++ P +TR QL
Sbjct: 785 P-EITSRAKTG-----------KVILPFKPLTVTFQNVQYYIETPQG-------KTR-QL 824
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L DITG +PG+LT+LMGVSGAGKTTL+DVLSGRKT GII+G+IR+GGYPKVQ TFAR+S
Sbjct: 825 LFDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIRVGGYPKVQETFARVS 884
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
GYCEQ DIHSPNITVEES+ +SAWLRL ID+KTK E V EVL+T+EL+ IKDS+VGLP
Sbjct: 885 GYCEQFDIHSPNITVEESLKYSAWLRLPYNIDAKTKNELVKEVLETVELEDIKDSMVGLP 944
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
G++GLSTEQRKRLTIAVELV+NPSIIF+DEPT+GLDARAAA VMRAVKNV ETGRTVVCT
Sbjct: 945 GISGLSTEQRKRLTIAVELVSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAETGRTVVCT 1004
Query: 782 IHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWM 841
IHQPSIDIFE FD+L+LMK+GG+++Y+GPLG+HS KVI+YFE IPGV K++ N NPATWM
Sbjct: 1005 IHQPSIDIFETFDELILMKDGGQLVYYGPLGKHSSKVIKYFESIPGVPKVQKNCNPATWM 1064
Query: 842 LEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQF 901
L+++ S E +LG+DFAQ Y++STLY+ENK +V+QLSS SLGS+ L FP+ + Q GW Q
Sbjct: 1065 LDITCKSAEHRLGMDFAQAYKDSTLYKENKMVVEQLSSASLGSEALSFPSRYSQTGWGQL 1124
Query: 902 KACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961
KAC+WK + SYWRNPS+NL RIVF SLL +LFWQK K I NQQD+F+I G++++
Sbjct: 1125 KACLWKQHCSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMYTIV 1184
Query: 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITY 1021
+F GI NC+ V+ + TER V YRERFA MYS WAYSF+QVLVEVPY +Q+++ II Y
Sbjct: 1185 IFSGINNCATVMNFIATERNVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSLLCTIIVY 1244
Query: 1022 PMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGF 1081
PMIGYH S YK+FWS Y +FC+LL FNY GML+V+LTPNI +A L S+F+SM+NLF GF
Sbjct: 1245 PMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGF 1304
Query: 1082 TIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFDH 1141
+PK +IPKWW W YYL PTSWVL+G+LSSQYGD++KEI+ FG+ K+VSAFL+DYFG+ H
Sbjct: 1305 VMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFGEKKSVSAFLEDYFGYKH 1364
Query: 1142 DFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
D L VV VLI FPI+ ASLFA+F+ +LNFQ++
Sbjct: 1365 DSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1569 bits (4062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1175 (63%), Positives = 919/1175 (78%), Gaps = 30/1175 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ ++EKL I PDP VDAYMKA S EGL+N+LQTDYILKILGLDICADT VGD R G+
Sbjct: 254 EISRMEKLQEIIPDPAVDAYMKATSVEGLKNNLQTDYILKILGLDICADTRVGDATRPGI 313
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGG+K+RLTTGEL+VGP LFMDEISNGLDSSTTFQIVS L+ L HI +AT LISLLQP
Sbjct: 314 SGGEKRRLTTGELVVGPATTLFMDEISNGLDSSTTFQIVSCLQQLAHIAEATILISLLQP 373
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDDVILM EGKI+YH P + C+FFE GF+CP+RKGVADFLQE++S+KDQ Q
Sbjct: 374 APETFELFDDVILMGEGKIIYHAPRADICRFFEEFGFKCPERKGVADFLQEIMSKKDQEQ 433
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW +D PYSY+SVD FI KFK +LGL+ EEL++ FNKS+ K+ + +KKYSL KWE+
Sbjct: 434 YWCHRDKPYSYISVDSFINKFKESNLGLLLKEELSKPFNKSQTRKDGLCYKKYSLGKWEM 493
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
LK C+ REFLLMKRNS +Y+FKS LV A VTMTVFL+ D +H N +G+LF AL
Sbjct: 494 LKACSRREFLLMKRNSFIYLFKSALLVFNALVTMTVFLQVGATTDSLHGNYLMGSLFTAL 553
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
L+ DG PE+ +TISRL VF K +DL FYPAWAYAIP+ ILK+PLS+L+SF+WT LTYY
Sbjct: 554 FRLLADGLPELTLTISRLGVFCKQKDLYFYPAWAYAIPSIILKIPLSVLDSFIWTLLTYY 613
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPEV RF QFL+ +L+ +S+FRAIA+IFRT+ S G ++IL+L LFGGF+
Sbjct: 614 VIGYSPEVKRFFLQFLILSTFNLSCVSMFRAIAAIFRTIIASTITGAISILVLSLFGGFV 673
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IPK SMP+WL WGFW+ PL+Y EIGLT NEF +PRW KVIS TTAG Q L+ RGLNF
Sbjct: 674 IPKSSMPAWLGWGFWLSPLSYAEIGLTANEFFSPRWSKVISSKTTAGEQMLDIRGLNFGR 733
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLE--LQDQKDCVGSDRD 539
YW + GAL+GF + FNA++ LALT+ P +SR +IS+EKY +D K C
Sbjct: 734 HSYWTAFGALVGFVLFFNALYVLALTYQNNPQRSRAIISHEKYSRPIEEDFKPC------ 787
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+A TG K+ILPF+PLTVTF++++YY++ P +TR
Sbjct: 788 ---PKITSRAKTG-----------KIILPFKPLTVTFQNVQYYIETPQG-------KTR- 825
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
QLLSDITG +PG+LT+LMGVSGAGKTTL+DVLSGRKT GII+G+I++GGYPKVQ TFAR
Sbjct: 826 QLLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIKVGGYPKVQETFAR 885
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+SGYCEQ DIHSPNITVEES+ +SAWLRL IDSKTK E V EVL+T+ELD IKDS+VG
Sbjct: 886 VSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDSKTKNELVKEVLETVELDDIKDSVVG 945
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
LPG++GLS EQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA VMRAVKNV ETGRTVV
Sbjct: 946 LPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTVV 1005
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFE FD+L+LMKNGG+++Y+GP GQ+S KVIEYFE G+ KI+ N NPAT
Sbjct: 1006 CTIHQPSIDIFETFDELILMKNGGQLVYYGPPGQNSSKVIEYFESFSGLPKIQKNCNPAT 1065
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
W+L+++S S E +LG+DF+Q Y++STLY++NK +V+QLSS SLGS+ L FP+ F Q W
Sbjct: 1066 WILDITSKSAEEKLGIDFSQSYKDSTLYKQNKMVVEQLSSASLGSEALRFPSQFSQTAWV 1125
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
Q KAC+WK + SYWRNPS+N+ RIVF S L G+LFWQK + I NQQD+ +I G++++
Sbjct: 1126 QLKACLWKQHYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYT 1185
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
VF G+ NC+ VI + ER V YRERFA MYS WAYSF+QVL+EVPY +Q+++ II
Sbjct: 1186 LVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTII 1245
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
YP IGYH S YK+FWS Y +FC+LL FNY GML+V+LTPNI +A L SSF+SMLNLF
Sbjct: 1246 VYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFA 1305
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
GF IPK +IPKWW W YYL PTSWVL+G+LSSQYGD+DKEI FG+ K VSAFL+DYFG+
Sbjct: 1306 GFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGY 1365
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
H+ L VV VLI +PI+ A+LFA+F+ +L+FQ++
Sbjct: 1366 KHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1557 bits (4031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1174 (61%), Positives = 916/1174 (78%), Gaps = 35/1174 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EKL GI PDPD+DAYMKA S EG + +LQTDYILKILGL ICADT VGD R G+
Sbjct: 253 EISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRPGI 312
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQK+RLTTGE+IVGP + LFMDEISNGLDSSTTFQI+S L+ +++ T L+SLLQP
Sbjct: 313 SGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEGTILVSLLQP 372
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDD+ILM EGKI+YHGP + C FFE CGF+CP+RK VA+FLQEVISRKDQ Q
Sbjct: 373 APETFELFDDLILMGEGKIIYHGPRDFVCSFFEDCGFKCPNRKSVAEFLQEVISRKDQEQ 432
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW + Y YVS++ FI KFK LGL + L+++++KS+ K+ + F+KYSL+ W++
Sbjct: 433 YWCHIEKTYCYVSIESFIEKFKKSDLGLELQDRLSKTYDKSQTQKDGLCFRKYSLSNWDM 492
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
LK C+ REFLLMKRNS +YVFKS L+ I + MTV+LR+ D +HAN +G+LF++L
Sbjct: 493 LKACSRREFLLMKRNSFVYVFKSGLLIFIGFIAMTVYLRTGSTRDSLHANYLMGSLFFSL 552
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
L+ DG PE+ +TISR+AVF K ++L FYPAWAYAIP++ILK+P+S LESF+WT LTYY
Sbjct: 553 FKLLADGLPELTLTISRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYY 612
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPE+GRFIRQFL+ FA+HL+ IS+FRAIA++FR V+ +G+++I++L +FGGFI
Sbjct: 613 VIGYSPEMGRFIRQFLILFALHLSCISMFRAIAAVFRDFVVATTVGSISIVLLSVFGGFI 672
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
+ K SMPSWLEWGFW+ PL+Y EIGLT NEF APRW K+ S N T G Q L++RGLNF +
Sbjct: 673 VRKPSMPSWLEWGFWLSPLSYAEIGLTANEFFAPRWGKITSENRTLGEQVLDARGLNFGN 732
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRS 541
YW + GALIGFT+ FN VF LALTFLK +SR ++S+EK
Sbjct: 733 QSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHEK------------------ 774
Query: 542 PTDAPLKAATGPKRGERPLAHR-KMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
T + +A R K LPFEPLT TF+D++Y ++ P +LQ
Sbjct: 775 --------NTQSSENDSKIASRFKNALPFEPLTFTFQDVQYIIETPQG--------KKLQ 818
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LLS +TG F+PG+LTALMGVSGAGKTTL+DVLSGRKT G I+G I +GGY KVQ TF+R+
Sbjct: 819 LLSGVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTFGDIKGQIEVGGYVKVQDTFSRV 878
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSPN+TV+ES+ +SAWLRL++ I S+TK VNEVL+TIEL+ IKDS+VG+
Sbjct: 879 SGYCEQFDIHSPNLTVQESLKYSAWLRLTSNISSETKCAIVNEVLETIELEEIKDSIVGI 938
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
PG++GL+TEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA VMRAVKN+ ETGRTVVC
Sbjct: 939 PGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVC 998
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSIDIFEAFD+L+LMKNGG+IIY+GPLGQHS KVIEYF I GV K+K+N NPATW
Sbjct: 999 TIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMRIHGVPKLKENSNPATW 1058
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
+L+++S S E +LGVD AQ+Y ESTL++ENK +++Q SLGS+ L + + Q WEQ
Sbjct: 1059 ILDITSKSSEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQ 1118
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FKAC+WK +LSYWRNPSYNL RI+F +L GILFWQK K+I NQQD+FN+ G++F+
Sbjct: 1119 FKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSMFTV 1178
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+F GI NCS V+ V TER V YRERF+ MY+ WAYS AQVLVE+PY Q+++YVII
Sbjct: 1179 VLFSGINNCSTVLFSVATERNVFYRERFSRMYNSWAYSLAQVLVEIPYSLFQSIVYVIIV 1238
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPM+GYHWS +K+FWSFY +FC LL FNY GML+V +TPN+ +A L SSFY+++NLF G
Sbjct: 1239 YPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAG 1298
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
+ +PKP IP+WW W YYL PTSWVL G+L+SQYGD++KEI AFG+ K VS FL+DYFG+
Sbjct: 1299 YVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSDFLEDYFGYR 1358
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
+D L +V +VLI FPIL ASLFA+FIG+LNFQ++
Sbjct: 1359 YDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1370 bits (3546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1195 (56%), Positives = 866/1195 (72%), Gaps = 31/1195 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK AGIFP+ DVD +MKA +A+G++NSL TDY LKILGLDIC DT+VGD M RG+
Sbjct: 284 ELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGI 343
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTTFQIV L+ +VH+ +AT L+SLLQP
Sbjct: 344 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQP 403
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+IL++EG+IVY GP +FFE GF+CP+RKG ADFLQEV S+KDQ Q
Sbjct: 404 APETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQEQ 463
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW + PY Y+ V +F +++K+ H+G ELA F+KS HK A+ F KYS++K EL
Sbjct: 464 YWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKREL 523
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAV-DIIHANAYLGALFYA 300
LK+C +E+LLM+RN+ YVFK+ Q+VIIA++T T+FLR+E+ + AN Y+GAL +
Sbjct: 524 LKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLFG 583
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
++I + +GF EM M +SRL VFYK RDL FYP+W +++P +L +P S+LES W +TY
Sbjct: 584 MIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTY 643
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y IGF+P+ RF +QFLL F + + SLFR IAS+ RT+ ++ G + +L++ L GGF
Sbjct: 644 YSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGGF 703
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-EKVISGNTTA--GMQTLESRGL 477
++PK +P W W +WV PLTY GL VNE APRW K+ S N+T G L + +
Sbjct: 704 LLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDV 763
Query: 478 NFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSD 537
++YWIS+GAL+ FT LFN +FTLALT+L P GK L+ E E +D +D
Sbjct: 764 YHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEE---ENED------AD 814
Query: 538 RDRSPTDAPLKAATGPKRGERPLAH----------------RKMILPFEPLTVTFEDLRY 581
+ + P L A G +RGE + + M+LPF PL ++F+D++Y
Sbjct: 815 QGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKY 874
Query: 582 YVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII 641
+VD+P MR G +TRLQLL +TG FRPG+LTALMGVSGAGKTTLMDVL+GRKTGG I
Sbjct: 875 FVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 934
Query: 642 EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFV 701
EGD+RI G+PKVQ TFARISGYCEQ DIHSP +TV ES++FSA+LRL ++ K FV
Sbjct: 935 EGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFV 994
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
++V++ +ELD ++DS+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 995 DQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEY 821
A VMRAV+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG++IY GPLGQ+S KV+EY
Sbjct: 1055 AIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEY 1114
Query: 822 FECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPS 881
FE PGV KI + YNPATWMLE SS + E +L VDFA++Y +S L+Q NK LVK+LS P
Sbjct: 1115 FESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPP 1174
Query: 882 LGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKG 941
G+ DL+F T F QN W QFK+C+WK +YWR+P YNL+R +FT A SLL G +FWQ G
Sbjct: 1175 AGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIG 1234
Query: 942 KKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQ 1001
N D+ ++GAL++A +F GI NCS V P+V ERTV YRER AGMYS Y+ +Q
Sbjct: 1235 GNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQ 1294
Query: 1002 VLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNI 1061
V E+PY+ IQ V Y +I Y M+G+ W K FW + + + LY+ Y GM+ VSLTPN
Sbjct: 1295 VTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQ 1354
Query: 1062 QVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEIS 1121
QVASI AS+FY + NLF GF IP+P+IPKWW W Y++CP +W + G++ SQYGD++ I
Sbjct: 1355 QVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQ 1414
Query: 1122 AFGKAK--TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
G A TV +++D++GF DF+G V VLI F + FA +FA+ I LNFQ R
Sbjct: 1415 VLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1352 bits (3500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/1187 (53%), Positives = 853/1187 (71%), Gaps = 20/1187 (1%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK A I PD D+DA+MKA + G E ++ TDYILKILGL+ICADTMVGD M RG+
Sbjct: 277 ELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGI 336
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQ+KR+TTGE++VGP RALFMDEIS GLDSSTTFQIV+ L+ VHI TA+ISLLQP
Sbjct: 337 SGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQP 396
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APET++LFDD+IL+++G+IVY GP +FFE GF+CPDRKGVADFLQEV S+KDQ Q
Sbjct: 397 APETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQ 456
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW D PY +V+V +F++ F++ H G ELA F+KS+ H A++ +Y EL
Sbjct: 457 YWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKEL 516
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANA-YLGALFYA 300
LK RE LLMKRNS +Y+F++ QL++++ + MT+F R+++ D + + Y+GALF+
Sbjct: 517 LKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFG 576
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
+++++ +GF E+ +T+ +L VF+K RDL FYPAW+Y IP+ ILK+P++ +E + LTY
Sbjct: 577 VLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTY 636
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IGF VG F +Q+LL A++ + SLFR I R + V+ + +L+ ++ GGF
Sbjct: 637 YVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGF 696
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVI---SGNTTAGMQTLESRGL 477
I+ ++ + W WG+W+ P+ Y + ++VNE + W K++ + N T G+Q L+SRG+
Sbjct: 697 ILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGV 756
Query: 478 NFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQK-----D 532
++ +YWI GA+IGFT+LFNA+FTLALT+L+P G SR +S E EL++++ +
Sbjct: 757 FPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE---ELKEKRANLNGE 813
Query: 533 CVG-----SDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPS 587
VG S R P + + + + R M+LPF PL+++F+++RY VD+P
Sbjct: 814 IVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQ 873
Query: 588 AMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647
M+ G RL+LL ++G+FRPG+LTALMGVSGAGKTTLMDVL+GRKTGG IEG I I
Sbjct: 874 EMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINI 933
Query: 648 GGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
GYPK Q TFAR+SGYCEQNDIHSP +TV ES++FSAWLRL +DS T+ F+ EV++
Sbjct: 934 SGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMEL 993
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+EL ++D+LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMR
Sbjct: 994 VELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1053
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPG 827
V+N V TGRTVVCTIHQPSIDIFEAFD+L LMK GG IY GPLG HS ++I+YFE IPG
Sbjct: 1054 VRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPG 1113
Query: 828 VLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDL 887
V KIKD YNPATWMLEV++ E LGVDF+ IY++S LYQ NK L+K LS P+ S DL
Sbjct: 1114 VSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDL 1173
Query: 888 HFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQ 947
+FPT + Q+ Q AC+WK NLSYWRNP YN +R FT ++LLFG +FW G K+
Sbjct: 1174 YFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKS 1233
Query: 948 QDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVP 1007
QD+FN +G++++A +F G++NC+ V P+V ERTV YRER AGMYS + Y+F QV++E+P
Sbjct: 1234 QDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIP 1293
Query: 1008 YLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASIL 1067
Y +QA +Y II Y MIG+ W+ K FW + M LLYF + GM+ V LTPN +ASI+
Sbjct: 1294 YTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIV 1353
Query: 1068 ASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAK 1127
+S+FY++ NLF GF IP+P++P WW W + CP +W L G++ SQ+GDI+ +
Sbjct: 1354 SSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME---DGT 1410
Query: 1128 TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
V F+++YFGF H +LG V V+ F LFASLF + I + NFQ+R
Sbjct: 1411 PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1352 bits (3499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/1187 (53%), Positives = 853/1187 (71%), Gaps = 20/1187 (1%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK A I PD D+DA+MKA + G E ++ TDYILKILGL+ICADTMVGD M RG+
Sbjct: 277 ELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGI 336
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQ+KR+TTGE++VGP RALFMDEIS GLDSSTTFQIV+ L+ VHI TA+ISLLQP
Sbjct: 337 SGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQP 396
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APET++LFDD+IL+++G+IVY GP +FFE GF+CPDRKGVADFLQEV S+KDQ Q
Sbjct: 397 APETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQ 456
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW D PY +V+V +F++ F++ H G ELA F+KS+ H A++ +Y EL
Sbjct: 457 YWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKEL 516
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANA-YLGALFYA 300
LK RE LLMKRNS +Y+F++ QL++++ + MT+F R+++ D + + Y+GALF+
Sbjct: 517 LKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFG 576
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
+++++ +GF E+ +T+ +L VF+K RDL FYPAW+Y IP+ ILK+P++ +E + LTY
Sbjct: 577 VLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTY 636
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IGF VG F +Q+LL A++ + SLFR I R + V+ + +L+ ++ GGF
Sbjct: 637 YVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGF 696
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVI---SGNTTAGMQTLESRGL 477
I+ ++ + W WG+W+ P+ Y + ++VNE + W K++ + N T G+Q L+SRG+
Sbjct: 697 ILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGV 756
Query: 478 NFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQK-----D 532
++ +YWI GA+IGFT+LFNA+FTLALT+L+P G SR +S E EL++++ +
Sbjct: 757 FPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE---ELKEKRANLNGE 813
Query: 533 CVG-----SDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPS 587
VG S R P + + + + R M+LPF PL+++F+++RY VD+P
Sbjct: 814 IVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQ 873
Query: 588 AMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647
M+ G RL+LL ++G+FRPG+LTALMGVSGAGKTTLMDVL+GRKTGG IEG I I
Sbjct: 874 EMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINI 933
Query: 648 GGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
GYPK Q TFAR+SGYCEQNDIHSP +TV ES++FSAWLRL +DS T+ F+ EV++
Sbjct: 934 SGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMEL 993
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+EL ++D+LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMR
Sbjct: 994 VELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1053
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPG 827
V+N V TGRTVVCTIHQPSIDIFEAFD+L LMK GG IY GPLG HS ++I+YFE IPG
Sbjct: 1054 VRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPG 1113
Query: 828 VLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDL 887
V KIKD YNPATWMLEV++ E LGVDF+ IY++S LYQ NK L+K LS P+ S DL
Sbjct: 1114 VSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDL 1173
Query: 888 HFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQ 947
+FPT + Q+ Q AC+WK NLSYWRNP YN +R FT ++LLFG +FW G K+
Sbjct: 1174 YFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKS 1233
Query: 948 QDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVP 1007
QD+FN +G++++A +F G++NC+ V P+V ERTV YRER AGMYS + Y+F QV++E+P
Sbjct: 1234 QDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIP 1293
Query: 1008 YLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASIL 1067
Y +QA +Y II Y MIG+ W+ K FW + M LLYF + GM+ V LTPN +ASI+
Sbjct: 1294 YTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIV 1353
Query: 1068 ASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAK 1127
+S+FY++ NLF GF IP+P++P WW W + CP +W L G++ SQ+GDI+ +
Sbjct: 1354 SSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME---DGT 1410
Query: 1128 TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
V F+++YFGF H +LG V V+ F LFASLF + I + NFQ+R
Sbjct: 1411 PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1174 | ||||||
| 255542838 | 1458 | ATP-binding cassette transporter, putati | 0.993 | 0.799 | 0.741 | 0.0 | |
| 224099040 | 1476 | predicted protein [Populus trichocarpa] | 0.993 | 0.789 | 0.724 | 0.0 | |
| 356565445 | 1452 | PREDICTED: pleiotropic drug resistance p | 0.993 | 0.803 | 0.732 | 0.0 | |
| 224112072 | 1455 | predicted protein [Populus trichocarpa] | 0.994 | 0.802 | 0.721 | 0.0 | |
| 224109722 | 1406 | predicted protein [Populus trichocarpa] | 0.955 | 0.798 | 0.722 | 0.0 | |
| 224099038 | 1459 | predicted protein [Populus trichocarpa] | 0.992 | 0.798 | 0.731 | 0.0 | |
| 224132634 | 1250 | predicted protein [Populus trichocarpa] | 0.991 | 0.931 | 0.717 | 0.0 | |
| 296089838 | 1406 | unnamed protein product [Vitis vinifera] | 0.993 | 0.829 | 0.704 | 0.0 | |
| 225450466 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.993 | 0.805 | 0.704 | 0.0 | |
| 255556558 | 1393 | ATP-binding cassette transporter, putati | 0.940 | 0.792 | 0.707 | 0.0 |
| >gi|255542838|ref|XP_002512482.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223548443|gb|EEF49934.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1853 bits (4799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1174 (74%), Positives = 1008/1174 (85%), Gaps = 8/1174 (0%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
EV + EK AGI PD DVDAYMKA+S EGL++++QTDYILKILGLDICADTMVGD MRRG+
Sbjct: 275 EVSRREKQAGIVPDTDVDAYMKAVSIEGLKSNIQTDYILKILGLDICADTMVGDAMRRGI 334
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGE+IVGP + LFMDE+SNGLDSSTTFQIVS L+HLVHITDATALISLLQP
Sbjct: 335 SGGQKKRLTTGEMIVGPAKTLFMDEVSNGLDSSTTFQIVSCLQHLVHITDATALISLLQP 394
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDDVILMAEGKIVYHGP C FFE CGFRCP RKGVADFLQEVISRKDQAQ
Sbjct: 395 APETFDLFDDVILMAEGKIVYHGPRPSICSFFEECGFRCPQRKGVADFLQEVISRKDQAQ 454
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW D PY+YVSVDQF+ KF+ LG EEL++ F+KSE HK+A+SFK+YSL K E+
Sbjct: 455 YWCRTDQPYNYVSVDQFVKKFRESQLGQKLTEELSKPFDKSESHKSALSFKQYSLPKLEM 514
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
K C+ REFLLMKRNS +YVFK+ QLVIIA++TMTV LR+ L VD++HAN Y+GA+FY++
Sbjct: 515 FKACSRREFLLMKRNSFIYVFKTVQLVIIAAITMTVLLRTRLGVDVLHANDYMGAIFYSI 574
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
++L+VDGFPE+ MT+SRLAVF+K ++LCFYPAWAY +PA++LK+PLSLLE+ VWTSLTYY
Sbjct: 575 LLLLVDGFPELQMTVSRLAVFHKQKELCFYPAWAYVVPATLLKIPLSLLEAVVWTSLTYY 634
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IGFSPE GRF RQ LL F +HLTSIS+FR IASI +T S G++ IL LLFGGFI
Sbjct: 635 VIGFSPEAGRFFRQLLLLFVIHLTSISMFRFIASICQTTVASTTFGSLFILTSLLFGGFI 694
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IPK SMP WL+WGFW+ PLTYGEIG+ VNEFLAPRW+K++S NTT G QTLESRGL++D
Sbjct: 695 IPKPSMPPWLDWGFWINPLTYGEIGMCVNEFLAPRWQKIMSANTTIGQQTLESRGLHYDG 754
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS-DRDR 540
FYWIS+GAL+GFT+LFN FTLALT+LKPPG++ +ISYEKY +LQ++ D D++
Sbjct: 755 YFYWISVGALLGFTVLFNIGFTLALTYLKPPGRTHAIISYEKYNQLQEKVDDNNHVDKNN 814
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
DA T + G +M+LPFEPLT+TF+DL+YYVD P MRK GF Q LQ
Sbjct: 815 RLADAYFMPDTRTETG-------RMVLPFEPLTITFQDLQYYVDAPLEMRKRGFAQKNLQ 867
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LL+DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG I+GDIRIGGYPKVQH FARI
Sbjct: 868 LLTDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTIKGDIRIGGYPKVQHLFARI 927
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGY EQ DIHSP ITVEES+++SAWLRL ++ID KTK+EFVNEVL+TIELDGIKDSLVGL
Sbjct: 928 SGYVEQTDIHSPQITVEESLIYSAWLRLPSEIDPKTKSEFVNEVLETIELDGIKDSLVGL 987
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
PG++GLSTEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA VMRAVKNVVETGRTVVC
Sbjct: 988 PGISGLSTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNVVETGRTVVC 1047
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSIDIFEAFD+L+L+K GGRIIY GPLG+HS +VIEYFE +PGV KI+DNYNPATW
Sbjct: 1048 TIHQPSIDIFEAFDELILLKIGGRIIYSGPLGRHSSRVIEYFENVPGVKKIEDNYNPATW 1107
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
MLEV+S S E +LGVDF QIY ESTLY+ENKELVKQLSSP GSK+LHF T FPQNGWEQ
Sbjct: 1108 MLEVTSKSAEAELGVDFGQIYEESTLYKENKELVKQLSSPMPGSKELHFSTRFPQNGWEQ 1167
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FKAC WKH++SYWR+PSYNL R+V+ A S LFG LFWQ+GK+I NQQD+F + G++++A
Sbjct: 1168 FKACFWKHHMSYWRSPSYNLTRLVYMVAASFLFGALFWQRGKEINNQQDLFIMFGSMYTA 1227
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+FFGI NCS V+P + TERTVLYRERFAGMYSPWAYS AQVLVE+PY FI A+IYV+IT
Sbjct: 1228 VIFFGINNCSSVLPYIATERTVLYRERFAGMYSPWAYSLAQVLVELPYSFIIAIIYVVIT 1287
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPM+GY S YKIFW+FY +FC LL FNYMGML+VSLTPNIQVASILASS Y+ML LF G
Sbjct: 1288 YPMVGYSMSAYKIFWAFYSLFCTLLSFNYMGMLLVSLTPNIQVASILASSTYTMLILFTG 1347
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F +P+P+IPKWW W YY+CPTSWVL GML+SQ+GDIDKEIS FG+ KTVSAFL+DYFGF
Sbjct: 1348 FIVPRPRIPKWWIWLYYMCPTSWVLNGMLTSQFGDIDKEISVFGETKTVSAFLEDYFGFH 1407
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
H+FLGVVG VL+IFP +FASLFAYFIG+LNFQRR
Sbjct: 1408 HNFLGVVGAVLVIFPFVFASLFAYFIGKLNFQRR 1441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1799 bits (4660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1175 (72%), Positives = 993/1175 (84%), Gaps = 9/1175 (0%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEVI+ EK AGI PDPDVDAYMKAIS EGL+++LQTDYILKILGLDIC+D MVGD MRRG
Sbjct: 310 MEVIRREKQAGILPDPDVDAYMKAISVEGLKSTLQTDYILKILGLDICSDIMVGDAMRRG 369
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGE+IVGP +ALFMDEISNGLDSSTTFQI+S ++HL HITDAT LISLLQ
Sbjct: 370 ISGGQKKRLTTGEMIVGPVKALFMDEISNGLDSSTTFQIMSCMQHLAHITDATVLISLLQ 429
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPETFDLFDD+ILMAEGKIVYHGP S KFFE CGFRCP+RKG+ADFLQEVISRKDQ
Sbjct: 430 PAPETFDLFDDIILMAEGKIVYHGPRSTISKFFEDCGFRCPERKGIADFLQEVISRKDQG 489
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYWH + +SY+ VDQF+ KFK G D+EL+R F+KS+ HKNA++F KYSLTKWE
Sbjct: 490 QYWHRTEQLHSYIPVDQFVKKFKESQFGEKLDKELSRPFDKSKSHKNALTFSKYSLTKWE 549
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L K C+ REFL+MKRNS +YV KS QLVI+AS+ MTV LR+ + VD IHAN Y+GALFYA
Sbjct: 550 LFKACSMREFLMMKRNSFIYVLKSIQLVIVASICMTVLLRTRMGVDEIHANYYMGALFYA 609
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
LVIL+VDG PE+ MT SRLAVFYK R+L FYPAWAYAIPA+ILKVPLSL+E+FVWT+LTY
Sbjct: 610 LVILVVDGVPELQMTTSRLAVFYKQRELYFYPAWAYAIPAAILKVPLSLMEAFVWTALTY 669
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG+SPE+ RF+RQFL+ F +HL S+S+FR +ASIF+T S G++AI+ LLFGGF
Sbjct: 670 YVIGYSPELERFLRQFLILFLLHLASLSMFRFVASIFQTAVASMTAGSIAIMGCLLFGGF 729
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+IPK SMP+WL+WGFW+ P+TYGEIGLT NEFLAPRWEK++SGNTT G QTLESRGLNF
Sbjct: 730 VIPKPSMPAWLQWGFWISPITYGEIGLTTNEFLAPRWEKIVSGNTTIGQQTLESRGLNFH 789
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV-GSDRD 539
FYWIS+GAL+G +LFN FTLALTFLKPPG SR +ISYE+Y +LQ +KD V G D D
Sbjct: 790 GYFYWISVGALMGLALLFNIGFTLALTFLKPPGNSRAIISYERYYQLQGRKDDVDGFDED 849
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+ A +++ GPK+G +M+LPFEPL +TF+D++YYVD P MRK G Q +L
Sbjct: 850 KKLHSAN-ESSPGPKKG-------RMVLPFEPLVMTFKDVQYYVDTPLEMRKRGVLQKKL 901
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
QLLSDITG FRPGILTALMGVSGAGKTTLMDVLSGRKTGG EG+IRIGGYPKVQ TFAR
Sbjct: 902 QLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTTEGEIRIGGYPKVQDTFAR 961
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
ISGYCEQ DIHSP IT+EES+VFSAWLRL + ID KTK +FVNEVL+TIELD IKDSLVG
Sbjct: 962 ISGYCEQADIHSPQITIEESVVFSAWLRLPSVIDPKTKFDFVNEVLETIELDWIKDSLVG 1021
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
+PG++GLSTEQRKRLTIAVELV+NPS+IFMDEPTSGLDARAAA VMRA KN+VETGRTV+
Sbjct: 1022 IPGISGLSTEQRKRLTIAVELVSNPSVIFMDEPTSGLDARAAAIVMRAAKNIVETGRTVI 1081
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+L+LMK GGR+IY G LGQ S +IEYFE IPGV KIKDNYNPAT
Sbjct: 1082 CTIHQPSIDIFEAFDELILMKTGGRLIYSGQLGQRSSALIEYFEKIPGVPKIKDNYNPAT 1141
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WMLEV+S S E +LGVDF QIY STLY+EN++LV+QLSS + GSKDLHFPT F QNGWE
Sbjct: 1142 WMLEVTSQSAEAELGVDFGQIYEGSTLYKENRKLVEQLSSKTPGSKDLHFPTQFSQNGWE 1201
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
Q KAC+WK NLSYWR+P YNL+RI F + +LLFG+LFWQ+GK I NQQD+F++LGA+++
Sbjct: 1202 QLKACLWKQNLSYWRSPPYNLLRISFISSGALLFGVLFWQQGKNINNQQDLFSMLGAMYT 1261
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
A +FFGI NCS V+P V+ +RTVLYRERFAG YS WAYS AQ+LVEVPYLF Q+VIYVI+
Sbjct: 1262 AIMFFGINNCSTVLPYVSADRTVLYRERFAGTYSAWAYSLAQLLVEVPYLFAQSVIYVIV 1321
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
TYPMIGY S YKIFWS YGMFC LL FNY+GML++S+TPN QVA IL S ++ +N F
Sbjct: 1322 TYPMIGYSLSAYKIFWSLYGMFCTLLCFNYLGMLLISVTPNAQVAIILCSIAFTTMNFFA 1381
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
GF +PK +IP WW W YY+CPTSW L+GM +SQYGD+DKEIS FG+ KT SAF++DYFG+
Sbjct: 1382 GFIVPKKRIPMWWIWLYYICPTSWALEGMFTSQYGDLDKEISVFGETKTASAFIEDYFGY 1441
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
DFLGVVG+VLII PI+ ASLF YFIG+LNFQRR
Sbjct: 1442 RQDFLGVVGLVLIIIPIVIASLFTYFIGKLNFQRR 1476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565445|ref|XP_003550950.1| PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1798 bits (4657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1175 (73%), Positives = 1011/1175 (86%), Gaps = 9/1175 (0%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV + EK GI PDPD+DAYMKA S GL++SLQTDYILKILGLDICADT+VGDP+RRG
Sbjct: 286 MEVSRKEKEGGIVPDPDLDAYMKATSINGLKSSLQTDYILKILGLDICADTLVGDPIRRG 345
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTTFQI+S L+HLVHITDATALISLLQ
Sbjct: 346 ISGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTTFQIISCLQHLVHITDATALISLLQ 405
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPETFDLFDDVILMAEGKIVYHGP Y +FFE GF+CP RKG ADFLQEVIS+KDQA
Sbjct: 406 PAPETFDLFDDVILMAEGKIVYHGPCDYILEFFEDSGFKCPQRKGTADFLQEVISKKDQA 465
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
+YW+ + PYSYVS+DQFI KFK C GL EEL++ F+KS+ HKNA+ FKKYSLTKWE
Sbjct: 466 KYWNSTEKPYSYVSIDQFIEKFKDCPFGLKLKEELSKPFDKSQSHKNALVFKKYSLTKWE 525
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L C RE LLMK+NS +YVFKSTQLVI+A V MTVF+R+ + VD++H N ++G+LFY+
Sbjct: 526 LFNACMMREILLMKKNSFVYVFKSTQLVIVAFVAMTVFIRTRMTVDVLHGNYFMGSLFYS 585
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+IL+VDGFPE++MT+SRLAV YK ++LCF+PAWAY IP+++LK+PLSLLESF+WT+L+Y
Sbjct: 586 LIILLVDGFPELSMTVSRLAVIYKQKELCFFPAWAYTIPSAVLKIPLSLLESFIWTTLSY 645
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG+SPE+GRF RQFLL F +H+TS+S+FR IAS+ +TV S GT+ IL++LLFGGF
Sbjct: 646 YVIGYSPEIGRFFRQFLLLFIIHVTSVSMFRFIASVCQTVVASVTAGTVTILVVLLFGGF 705
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
IIPK MPSWL+WGFWV PLTYGEIGLTVNEFLAPRWEK +SGN T G Q LESRGLNFD
Sbjct: 706 IIPKPYMPSWLQWGFWVSPLTYGEIGLTVNEFLAPRWEK-MSGNRTLGQQVLESRGLNFD 764
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS-DRD 539
FYWISI ALIGFT+LFN FTL LTFL P +SRTLIS EK+ ELQ Q++ GS D
Sbjct: 765 GYFYWISIAALIGFTVLFNVGFTLMLTFLNSPARSRTLISSEKHSELQGQQESYGSVGAD 824
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+ + + + ++G ++LPF+PL V F D++YYVD P MR GF + RL
Sbjct: 825 KKHVGSMVGSTVQTRKG-------GLVLPFQPLAVAFHDVQYYVDSPLEMRNRGFTEKRL 877
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
QLLSDITG+ RPGILTALMGVSGAGKTTLMDVL GRKTGGIIEG+IRIGGYPKVQ TFAR
Sbjct: 878 QLLSDITGSLRPGILTALMGVSGAGKTTLMDVLCGRKTGGIIEGEIRIGGYPKVQETFAR 937
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+SGYCEQNDIHSPNITVEES++FSAWLRL +QID+KTKAEFVNEV+ TIELDGIKDSLVG
Sbjct: 938 VSGYCEQNDIHSPNITVEESVMFSAWLRLPSQIDAKTKAEFVNEVIHTIELDGIKDSLVG 997
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
+P ++GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA VMRAVKNVV TGRTV
Sbjct: 998 MPNISGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRAVKNVVGTGRTVA 1057
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+L+LMK GGR+ Y GPLG+HS +VIEYFE IPGV KIKDNYNP+T
Sbjct: 1058 CTIHQPSIDIFEAFDELILMKAGGRLTYAGPLGKHSSRVIEYFESIPGVPKIKDNYNPST 1117
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WMLEV+S S E +LG+DFAQIYRESTLY++NKELV+QLSSP S+DL+FP+HFPQNGWE
Sbjct: 1118 WMLEVTSRSAEAELGIDFAQIYRESTLYEQNKELVEQLSSPPPNSRDLYFPSHFPQNGWE 1177
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
QFKAC+WK +LSYWR+PSYNL+RI+F SLLFGILFW++GKKI +QQDVFN+ GA++S
Sbjct: 1178 QFKACLWKQHLSYWRSPSYNLMRIIFVAVSSLLFGILFWKQGKKINSQQDVFNVFGAMYS 1237
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
AA+FFGI NCS V+P V TERTVLYRERFAGMYSPWAYSFAQVL+EVPY+FIQAV+YVII
Sbjct: 1238 AALFFGINNCSTVLPYVATERTVLYRERFAGMYSPWAYSFAQVLIEVPYIFIQAVVYVII 1297
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
TYPM+ Y WS YKIFWSF+ MFCN+LY+NY+GMLIVSLTPN+Q+A+I+ASS Y+MLNLF
Sbjct: 1298 TYPMLSYDWSAYKIFWSFFSMFCNILYYNYLGMLIVSLTPNVQLAAIVASSSYTMLNLFS 1357
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
G+ +P+ +IPKWW W YYLCP SW L GML+SQYGD++KEISAF + KT++ FL+DY+GF
Sbjct: 1358 GYFVPRLRIPKWWIWMYYLCPMSWALNGMLTSQYGDVNKEISAFEEKKTIAKFLEDYYGF 1417
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HDFLGVVG+VLI+ PI+ A LFAY IG LNFQ+R
Sbjct: 1418 HHDFLGVVGVVLIVIPIVIAILFAYCIGNLNFQKR 1452
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112072|ref|XP_002316074.1| predicted protein [Populus trichocarpa] gi|222865114|gb|EEF02245.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1784 bits (4620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1178 (72%), Positives = 985/1178 (83%), Gaps = 11/1178 (0%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV + EK AGI PD DVDAYMKAIS EGL+++LQTDYILKILGLDICADTMVGD MRRG
Sbjct: 285 MEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQTDYILKILGLDICADTMVGDTMRRG 344
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRL+TGE++VGP +ALFMDEISNGLDSSTTFQIVS ++HL HITDAT LISLLQ
Sbjct: 345 ISGGQKKRLSTGEMVVGPMKALFMDEISNGLDSSTTFQIVSCMQHLAHITDATVLISLLQ 404
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPE FDLFDD++LMAEG +VYHGP S C+FFE GFRCP+RK VADFLQEVISRKDQ
Sbjct: 405 PAPEIFDLFDDIMLMAEGMVVYHGPRSSVCRFFEDSGFRCPERKEVADFLQEVISRKDQR 464
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW+C + P+SYVSV+QF+ KFK LG M DEE+ + F+KS HK A+ F+KYSL+KWE
Sbjct: 465 QYWYCTEQPHSYVSVEQFVKKFKESQLGQMLDEEIMKPFDKSNSHKTALCFRKYSLSKWE 524
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L K C+TREF+LMKRNS +YVFK TQLVI AS+TMTVFLR+ +AVD IHA+ Y+ ALF+A
Sbjct: 525 LFKVCSTREFVLMKRNSFIYVFKCTQLVITASITMTVFLRTRMAVDAIHASYYMSALFFA 584
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L IL DG PE++MT+SRLAVFYK R+LCFYPAWAY +P +ILKVPLSL+E+FVWT+LTY
Sbjct: 585 LTILFSDGIPELHMTVSRLAVFYKQRELCFYPAWAYVVPTAILKVPLSLVEAFVWTTLTY 644
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y++G+SPE GRF RQFLL F VH TSIS+FR +AS+F+T+ S G +A+L+ LLFGGF
Sbjct: 645 YVVGYSPEFGRFFRQFLLLFLVHSTSISMFRFVASLFQTMVASVTAGGLALLITLLFGGF 704
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+IPK SMP WL WGFW+ PL YGEIGL++NEFL PRW K +SGNTT QTLESRGLNF
Sbjct: 705 LIPKPSMPVWLGWGFWISPLAYGEIGLSLNEFLTPRWAKTVSGNTTIQQQTLESRGLNFH 764
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS---- 536
FYWIS+GALIG T+LFN F LALTFLK PG SR +ISYE+Y + Q + D S
Sbjct: 765 GYFYWISVGALIGLTVLFNVGFALALTFLKSPGNSRAIISYERYYQQQGKLDDGASFDIN 824
Query: 537 DRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQ 596
+ ++ T A K++ G K+G +M LPFEPLT+TF+D+RYYVD P MRK GF Q
Sbjct: 825 NDKKTLTCACPKSSPGDKKG-------RMALPFEPLTMTFKDVRYYVDTPLEMRKRGFPQ 877
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT 656
+LQLLSDITG FRPGILTALMGVSGAGKTTLMDVLSGRKTGG IEG+IRIGGYPKVQH+
Sbjct: 878 KKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTIEGEIRIGGYPKVQHS 937
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
FAR+SGYCEQ DIHSP ITVEES+++SAWLRL +ID+KTK EFVN+VL+TIELD IKDS
Sbjct: 938 FARVSGYCEQTDIHSPQITVEESVIYSAWLRLPPEIDTKTKYEFVNQVLETIELDEIKDS 997
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
LVG+PG++GLS EQRKRLT+AVELVANPSIIFMDEPTSGLDARAAA VMR VKN+VETGR
Sbjct: 998 LVGIPGISGLSIEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRVVKNIVETGR 1057
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYN 836
T+VCTIHQPSIDIFEAFD+L+LMK GGRIIY GPLGQ S KVIEYFE IPGV KIK+ YN
Sbjct: 1058 TIVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQRSSKVIEYFENIPGVPKIKNRYN 1117
Query: 837 PATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQN 896
PATWMLEVSS + E LGVDF + Y STLY+ENKELVKQLSSP+ GSKDLHFPT FPQN
Sbjct: 1118 PATWMLEVSSKTAEADLGVDFGEAYEGSTLYEENKELVKQLSSPTPGSKDLHFPTCFPQN 1177
Query: 897 GWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGA 956
GWEQ KAC+WK +LSYWR+PSYNL+RIVF +LLFG+LFWQ+G KI NQQD+F+I G+
Sbjct: 1178 GWEQLKACLWKQHLSYWRSPSYNLLRIVFMSFGALLFGLLFWQQGNKINNQQDLFSIAGS 1237
Query: 957 LFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIY 1016
++S +FFGI NCS V+ V ERTV YRERFAGMYS WAYSFAQVLVEVPYL I+ ++Y
Sbjct: 1238 MYSIIIFFGINNCSPVLAFVARERTVFYRERFAGMYSSWAYSFAQVLVEVPYLLIEGILY 1297
Query: 1017 VIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLN 1076
VIITYPMIGY S YKIFWSFY MFC LL+FNY+GML+VSLTPNIQVAS LA+ Y+ LN
Sbjct: 1298 VIITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTPNIQVASNLAAFAYTTLN 1357
Query: 1077 LFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDY 1136
F GF +PKP IPKWW W YY+CP+SW L ML+SQYGD++KEIS FG+ TV+ F+ DY
Sbjct: 1358 FFSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQYGDVNKEISVFGETMTVADFVGDY 1417
Query: 1137 FGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
FGF H+FLGVVG+VLIIFPI+ ASLFAYF G LNFQRR
Sbjct: 1418 FGFHHNFLGVVGVVLIIFPIITASLFAYFFGRLNFQRR 1455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1774 bits (4595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1174 (72%), Positives = 977/1174 (83%), Gaps = 52/1174 (4%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV + EK AGI PD DVDAYMKAIS EGL+++LQTDYILKILGLDICADTMVGD MRRG
Sbjct: 285 MEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQTDYILKILGLDICADTMVGDAMRRG 344
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT QI+S L+HL HI DAT LISLLQ
Sbjct: 345 ISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTTLQIISCLQHLSHIMDATVLISLLQ 404
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPETFDLFDD+ILM EGKIVYHGP S CKFFE CGFRCP+RKGVADFLQEVISRKDQ
Sbjct: 405 PAPETFDLFDDIILMTEGKIVYHGPRSSICKFFEDCGFRCPERKGVADFLQEVISRKDQG 464
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW + PY YVSVDQF+ KFK LG +EE+++ F+KS+ HK+A+SF YSLTKWE
Sbjct: 465 QYWFLTEEPYRYVSVDQFVKKFKESQLGKNLEEEISKPFDKSKNHKSALSFTSYSLTKWE 524
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
+ K C+ REFLLMKRNS +YVFK+TQL IIAS+TMTV LR+ +A+D IHA+ Y+GALFY
Sbjct: 525 MFKACSVREFLLMKRNSFIYVFKTTQLFIIASITMTVLLRTRMAIDAIHASYYMGALFYG 584
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+IL+VDGFPE+ MT+SRLAVFYKHR+LCFYPAWAYAIP++ILKVP+SLLE+FVWT+LTY
Sbjct: 585 LLILLVDGFPELQMTVSRLAVFYKHRELCFYPAWAYAIPSAILKVPVSLLEAFVWTALTY 644
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG+SPE GRF+RQFLL F VHLTS S+FR +AS+F+TV S A G++AIL+ +FGGF
Sbjct: 645 YVIGYSPEFGRFLRQFLLLFLVHLTSTSMFRFVASVFQTVVASTAAGSLAILVASVFGGF 704
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+I K +MP WL WGFW+ PLTYGEIGLTVNEFLAPRWEKV+SG T+ G QTLESRGL+F
Sbjct: 705 VIAKPAMPVWLAWGFWISPLTYGEIGLTVNEFLAPRWEKVVSGYTSIGQQTLESRGLDFH 764
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDR 540
FYWIS+GALIG T+L N FT+ALTFLK
Sbjct: 765 GYFYWISVGALIGMTVLLNIGFTMALTFLK------------------------------ 794
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
R+M+LPFEPL +TF D++YYVD P MRK G Q +L+
Sbjct: 795 ----------------------RRMVLPFEPLAMTFADVQYYVDTPLEMRKRGNQQKKLR 832
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LLSDITG F+PGILTALMGVSGAGKTTLMDVLSGRKTGG IEG+IRIGGY KVQ +FARI
Sbjct: 833 LLSDITGAFKPGILTALMGVSGAGKTTLMDVLSGRKTGGTIEGEIRIGGYLKVQDSFARI 892
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSP ITVEES+V+SAWLRL +I+++TK EFVNEV+ TIELD IKDSLVG+
Sbjct: 893 SGYCEQTDIHSPQITVEESLVYSAWLRLPPEINARTKTEFVNEVIDTIELDEIKDSLVGM 952
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMRA KN+VETGRTVVC
Sbjct: 953 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAAKNIVETGRTVVC 1012
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSIDIFEAFD+L+LMK GGRIIY GPLGQ S +VIEYFE IPGV KIKDNYNPATW
Sbjct: 1013 TIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQGSSRVIEYFESIPGVPKIKDNYNPATW 1072
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
+LEV+S S E +LGVDF +IY STLYQEN++LVKQLSSP+ GSK+LHFPT FPQNGWEQ
Sbjct: 1073 ILEVTSQSAEAELGVDFGRIYEGSTLYQENEDLVKQLSSPTPGSKELHFPTRFPQNGWEQ 1132
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
KAC+WK NLSYWR+PSYNL+RIVF + + LFG+L+WQ+GKKIKN+QD+FNI+G++++
Sbjct: 1133 LKACLWKQNLSYWRSPSYNLVRIVFMSSGASLFGLLYWQQGKKIKNEQDLFNIVGSMYAL 1192
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
VFFGI NCS V+P VTTERTVLYRERFAGMYS WAYSFAQVLVEVPYL +Q++IY+I T
Sbjct: 1193 IVFFGINNCSSVLPFVTTERTVLYRERFAGMYSSWAYSFAQVLVEVPYLLVQSIIYLITT 1252
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPMIGY S YKIFWSF+ MFC LL+FNY GML+VSLTPNIQVA+ILAS Y+MLN F G
Sbjct: 1253 YPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNIQVAAILASFSYTMLNFFSG 1312
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F +PKP IPKWW W YY+CPTSW L GML+SQYGD+D+EIS FG+A+ +S F++DYFGF
Sbjct: 1313 FVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEISVFGEARALSDFIEDYFGFH 1372
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
H FL VVG+VL+IFPI+ ASLFAYFIG LNFQRR
Sbjct: 1373 HSFLSVVGVVLVIFPIVTASLFAYFIGRLNFQRR 1406
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099038|ref|XP_002311358.1| predicted protein [Populus trichocarpa] gi|222851178|gb|EEE88725.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1768 bits (4579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1177 (73%), Positives = 996/1177 (84%), Gaps = 12/1177 (1%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEVI+ EK AGI PD DVD YMK IS EGL+++LQTDYILKILGLDIC+DTM+GD MRRG
Sbjct: 292 MEVIRREKQAGIHPDSDVDTYMKGISVEGLKSTLQTDYILKILGLDICSDTMIGDAMRRG 351
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTT QIVS L+ + H+T T LISLLQ
Sbjct: 352 ISGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTTSQIVSCLQQMAHVTHDTVLISLLQ 411
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPETFDLFDDVILMAEGKIVYHGP S CKFFE CGFRCP+RKGVADFLQEVISRKDQA
Sbjct: 412 PAPETFDLFDDVILMAEGKIVYHGPRSSICKFFEDCGFRCPERKGVADFLQEVISRKDQA 471
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW+C++ PYSYVS+D+++ KFK G DEEL++ F KSE HK A+SF+KYSL KWE
Sbjct: 472 QYWYCKEQPYSYVSIDEYVKKFKESEFGQKLDEELSKPFAKSESHKTALSFEKYSLPKWE 531
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L K C+TREFLLMKRN +YVFKS LV IASVTMTV LR+ +AVD IHAN Y+GALFYA
Sbjct: 532 LFKVCSTREFLLMKRNYFIYVFKSVLLVFIASVTMTVLLRTRMAVDPIHANYYMGALFYA 591
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+I++VDG PE+ MT+SRLAVF K R+LCFYPAWAYAIPA+ILKVPLS LE+FVWT+LTY
Sbjct: 592 LIIILVDGLPELLMTVSRLAVFNKQRELCFYPAWAYAIPAAILKVPLSFLEAFVWTTLTY 651
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG+SPEV RF RQFLLFF VHLTS S++R IASIF+TV S G++ +L++LLFGGF
Sbjct: 652 YVIGYSPEVSRFFRQFLLFFLVHLTSTSMYRFIASIFQTVVASTLAGSLIVLIVLLFGGF 711
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+I K SMP+WLEWGFW PLTYGEIGLTVNEFLAPRW KV+S N T G + LESRGLNF
Sbjct: 712 LIQKPSMPAWLEWGFWFSPLTYGEIGLTVNEFLAPRWGKVVSANATIGQRILESRGLNFH 771
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKD---CVGSD 537
S FYWIS+GALIGFT+LFN FTLALTFLK PGK+R +ISYEKY LQ + D CVG
Sbjct: 772 SYFYWISVGALIGFTVLFNVGFTLALTFLKSPGKTRAIISYEKYNRLQGKIDGGVCVG-- 829
Query: 538 RDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQT 597
++++PT A K++TGP +G +++LPFE T TF+D++YYVD P MRK GF
Sbjct: 830 KNKTPTSACSKSSTGPNKG-------RLVLPFELFTFTFKDVQYYVDTPLEMRKRGFLPK 882
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 657
RLQLLSDITG FRPGILTALMG SGAGKTTLMDVLSGRKT G IEG+IRI GY KVQ TF
Sbjct: 883 RLQLLSDITGAFRPGILTALMGASGAGKTTLMDVLSGRKTLGTIEGEIRIAGYLKVQDTF 942
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
ARISGYCEQ DIHSP ITVEES+V+SAWLRL +I ++ K EFVNEVL+TIELDGIKD+L
Sbjct: 943 ARISGYCEQTDIHSPQITVEESLVYSAWLRLPPEIPAEKKFEFVNEVLETIELDGIKDAL 1002
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
VG+PG++GLSTEQRKRLTIAVELVANP IIFMDEPTSGLDARAAA VMRAVKNV ETGRT
Sbjct: 1003 VGIPGISGLSTEQRKRLTIAVELVANPYIIFMDEPTSGLDARAAAVVMRAVKNVAETGRT 1062
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNP 837
VVCTIHQPSIDIFEAF++L+LMK GGRIIYFGP+GQ S KVIEYFE IPGV KI+D YNP
Sbjct: 1063 VVCTIHQPSIDIFEAFEELLLMKLGGRIIYFGPVGQFSSKVIEYFESIPGVPKIEDKYNP 1122
Query: 838 ATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNG 897
ATWMLEV+S S E +LGVDFAQIYRESTLY+ENK+LV+QLSSP GSKDLHFP+ FPQNG
Sbjct: 1123 ATWMLEVTSRSAEAELGVDFAQIYRESTLYKENKQLVEQLSSPISGSKDLHFPSRFPQNG 1182
Query: 898 WEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGAL 957
WEQ KAC+WK NLSYWR+P+YNLIRI + + S+LFG+LFWQ+GK+I+N QD+FNILG++
Sbjct: 1183 WEQLKACIWKQNLSYWRSPAYNLIRIFYIFSGSVLFGLLFWQQGKRIENHQDLFNILGSM 1242
Query: 958 FSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYV 1017
+SA +FFGI NCS V+P + ER V+YRERFAGMYS WAYSFAQVLVEVPYL QA+IYV
Sbjct: 1243 YSAIIFFGISNCSGVLPRIAAERAVMYRERFAGMYSSWAYSFAQVLVEVPYLLAQAIIYV 1302
Query: 1018 IITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNL 1077
IT+ MIGY S YKIFWS YGMFC LL FNY+GML++S+TP+IQ+AS L S FY+ML+L
Sbjct: 1303 TITHTMIGYSLSPYKIFWSVYGMFCTLLSFNYLGMLLISVTPDIQLASALTSPFYTMLHL 1362
Query: 1078 FCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYF 1137
F GF +P+ IPKWW W YY+ PTSW L G+ +SQYGD++KEI+ FG+ K+V+AFL DYF
Sbjct: 1363 FSGFFVPRTYIPKWWIWLYYISPTSWQLNGLFTSQYGDLEKEITVFGQTKSVAAFLQDYF 1422
Query: 1138 GFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
GF +FL VV +VLIIFPI+FASLFAYFIG LNFQ+R
Sbjct: 1423 GFHRNFLSVVAVVLIIFPIIFASLFAYFIGRLNFQKR 1459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132634|ref|XP_002321371.1| predicted protein [Populus trichocarpa] gi|222868367|gb|EEF05498.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1758 bits (4553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1176 (71%), Positives = 986/1176 (83%), Gaps = 12/1176 (1%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV + EK AGI PD DVDAYMKAIS EGL+++LQTDYILKILGLDICADTMVGD MRRG
Sbjct: 85 MEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQTDYILKILGLDICADTMVGDAMRRG 144
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT QI+S L+HL H+ DAT LISLLQ
Sbjct: 145 ISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTTLQIISCLQHLSHMMDATVLISLLQ 204
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPETFDLFDD+ILM EGKIVYHGP S CKFFE CGFRCP+RKGVADFLQEVISRKDQ
Sbjct: 205 PAPETFDLFDDIILMTEGKIVYHGPRSSICKFFEDCGFRCPERKGVADFLQEVISRKDQG 264
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW + PY YVSVDQF+ KFK LG +EE+++ F+KS+ HK+A+SF YSLTKWE
Sbjct: 265 QYWFLTEQPYRYVSVDQFVKKFKESQLGKNLEEEISKPFDKSKNHKSALSFTSYSLTKWE 324
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
+ K C+ REFLLMKRNS +YVFK+TQL IIAS+TMTV LR+ +A+D IHA+ Y+GALFY
Sbjct: 325 MFKACSVREFLLMKRNSFIYVFKTTQLFIIASITMTVLLRTRMAIDAIHASYYMGALFYG 384
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+IL+VDGFPE+ MT+SRLAVFYKHR+LCFYPAWAYAIP++ILKVP+SLLE+FVWT+LTY
Sbjct: 385 LLILLVDGFPELQMTVSRLAVFYKHRELCFYPAWAYAIPSAILKVPVSLLEAFVWTALTY 444
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y+IG+SPE GRF+RQFLL F VHLTS S+FR +AS+F+TV S A G++AIL+ +FGGF
Sbjct: 445 YVIGYSPEFGRFLRQFLLLFLVHLTSTSMFRFVASVFQTVVASTAAGSLAILVASVFGGF 504
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
+I K +MP WL WGFW+ PLTYGEIGLTVNEFLAPRWEKV+SG T+ G QTLESRGL+F
Sbjct: 505 VIAKPAMPVWLAWGFWISPLTYGEIGLTVNEFLAPRWEKVVSGYTSIGQQTLESRGLDFH 564
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQ-KDCVGSDRD 539
FYWIS+GALIG T+L N FT+ALTFLKPPG SR IS EKY +LQ + D D+D
Sbjct: 565 GYFYWISVGALIGMTVLLNIGFTMALTFLKPPGNSRAFISREKYNQLQGKINDRDFFDKD 624
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+ T AP K++T K+G +M+LPFEPLT+TF D++YYVD P MRK G Q +L
Sbjct: 625 MTLTAAPAKSSTETKKG-------RMVLPFEPLTMTFTDVQYYVDTPLEMRKRGNQQKKL 677
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
+LLSDITG F+PGILTALMGVSGAGKTTLMDVLSGRKTGG IEG+IRIGGY KVQ +FAR
Sbjct: 678 RLLSDITGAFKPGILTALMGVSGAGKTTLMDVLSGRKTGGTIEGEIRIGGYLKVQDSFAR 737
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
ISGYCEQ DIHSP ITVEES+V+SAWLRL +I+++TK EFVNEV+ IELD IKDSL G
Sbjct: 738 ISGYCEQTDIHSPQITVEESLVYSAWLRLPPEINARTKTEFVNEVIDIIELDEIKDSLAG 797
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
+PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMRA KN+VETGRTVV
Sbjct: 798 MPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAAKNIVETGRTVV 857
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+L+LMK GGRIIY GPLGQ S +VIEYFE IPGV KIKDNYNPAT
Sbjct: 858 CTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQGSSRVIEYFESIPGVPKIKDNYNPAT 917
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
W+LEV+S S E +LGVDF +IY STLYQEN++LVKQLSSP+ GSK+LHFPT FPQNGWE
Sbjct: 918 WILEVTSQSAEAELGVDFGRIYEGSTLYQENEDLVKQLSSPTPGSKELHFPTRFPQNGWE 977
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
Q KAC+WK NLSYWR+PSYNL+RIVF + + LFG+L+WQ+GKKIKN+QD+FNI+G++++
Sbjct: 978 QLKACLWKQNLSYWRSPSYNLVRIVFMSSGASLFGLLYWQQGKKIKNEQDLFNIVGSMYA 1037
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYS-FAQVLVEVPYLFIQAVIYVI 1018
VFFGI NCS V+P + + ++ M + + VLVEVPYL Q++IY+I
Sbjct: 1038 LIVFFGINNCSSVLPFFNRKNNKI---GYSCMLLLFCFVLLMHVLVEVPYLLAQSIIYLI 1094
Query: 1019 ITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLF 1078
ITYPMIGY S YKIFWSF+ MFC LL+FNY GML+VSLTPNIQVA+ILAS Y+MLN F
Sbjct: 1095 ITYPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNIQVAAILASFSYTMLNFF 1154
Query: 1079 CGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFG 1138
GF +PKP IPKWW W YY+CPTSW L GML+SQYGD+D+EIS FG+A+ +S F++DYFG
Sbjct: 1155 SGFVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEISVFGEARALSDFIEDYFG 1214
Query: 1139 FDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
F H FL VVG+VL+IFPI+ ASLFAYFIG LNFQRR
Sbjct: 1215 FHHSFLSVVGVVLVIFPIVTASLFAYFIGRLNFQRR 1250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1754 bits (4542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1174 (70%), Positives = 982/1174 (83%), Gaps = 8/1174 (0%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
EV + EK AGI PDPD+D YMKAIS EGL+ +LQTDYILKILGLDICADTMVGD MRRG+
Sbjct: 240 EVSRREKQAGIVPDPDIDTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGI 299
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTTFQIV++L+ LVHI DAT L+SLLQP
Sbjct: 300 SGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQP 359
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+ILMAEG IVYHGP S+ +FFE CGFRCP+RKGVADFLQEVISR+DQAQ
Sbjct: 360 APETFDLFDDIILMAEGIIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQ 419
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW+ + +SYVSV F KFK G +E+L++ F+KS HKNA+SF KYSL+KWEL
Sbjct: 420 YWYHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWEL 479
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
+ C +REFLLMKRNS +YVFKSTQLVIIA++TMTVFLR+ + VDIIHAN YLG+LFYAL
Sbjct: 480 FRACMSREFLLMKRNSFIYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYAL 539
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
VIL+VDGFPE++MT+SRL VFYK RDLCFYPAWAY IPA+ILK+PLS +ES VWTSLTYY
Sbjct: 540 VILLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYY 599
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPE GRF+RQF+LFF+VHL+S+S+FR AS+ RT+ S G+ AIL++LLFGGFI
Sbjct: 600 VIGYSPEFGRFLRQFILFFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFI 659
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IP+ SMP WL+W FW+ P+TYGEIGL VNEFLAPRW+K +S NTT G +TLE+RGLNFD
Sbjct: 660 IPQPSMPDWLKWAFWISPMTYGEIGLAVNEFLAPRWQKTLSTNTTLGRETLENRGLNFDG 719
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV-GSDRDR 540
+WIS+ AL G T++FN FTLAL+FL+ PGKSR +IS+EK +LQ + G+ ++
Sbjct: 720 YLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEK 779
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
+ P K G +M+LPF+PLTV+F+D++YYVD P MR+ GF Q +L
Sbjct: 780 ESKNPPPKTTKEADIG-------RMVLPFQPLTVSFQDVQYYVDTPVEMRQKGFAQKKLH 832
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LL D+TG+ RPG+LTALMGVSGAGKTTLMDVL+GRKT G IEG+IRIGGYPKVQ TFARI
Sbjct: 833 LLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARI 892
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSP IT+EES++FSAWLRLS QIDSKTKAEFVNEVL+TIELDGIKD+LVG+
Sbjct: 893 SGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGM 952
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPTSGLDARAAA VMRAVKNVV+TGRT+VC
Sbjct: 953 PGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVC 1012
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSIDIFEAFD+L+L+K GG +IY GPLGQHS +VIEYFE IPGV KI++NYNPATW
Sbjct: 1013 TIHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATW 1072
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
MLEV+S S E +LGVDFAQIY++S LY+ NKELVKQLS P GS+DLHFPT F +NGW Q
Sbjct: 1073 MLEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQ 1132
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FK+C+WK +LSYWR+PSYN+ R + SLLFGILFW++GK++ NQQ VFN+LG+++ A
Sbjct: 1133 FKSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVA 1192
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+F GI NCS V+P VT ERTVLYRE+FAGMYS WAYS AQV +E+PYLFIQ +IYVIIT
Sbjct: 1193 VIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIIT 1252
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPMIGY+ S YKIFW FY MFC LLY+NY+GML+V++TP+ VASIL+S+FY++ NLF G
Sbjct: 1253 YPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAG 1312
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F IP+PQ+PKWW W +YL PTSW + GML+SQYGDI K+I FG+ KTV+ FL DY+GF
Sbjct: 1313 FLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFH 1372
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L VV ++LI FP+ FA LF Y I LNFQRR
Sbjct: 1373 HDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1753 bits (4541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1174 (70%), Positives = 982/1174 (83%), Gaps = 8/1174 (0%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
EV + EK AGI PDPD+D YMKAIS EGL+ +LQTDYILKILGLDICADTMVGD MRRG+
Sbjct: 282 EVSRREKQAGIVPDPDIDTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGI 341
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTTFQIV++L+ LVHI DAT L+SLLQP
Sbjct: 342 SGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQP 401
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+ILMAEG IVYHGP S+ +FFE CGFRCP+RKGVADFLQEVISR+DQAQ
Sbjct: 402 APETFDLFDDIILMAEGIIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQ 461
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW+ + +SYVSV F KFK G +E+L++ F+KS HKNA+SF KYSL+KWEL
Sbjct: 462 YWYHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWEL 521
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
+ C +REFLLMKRNS +YVFKSTQLVIIA++TMTVFLR+ + VDIIHAN YLG+LFYAL
Sbjct: 522 FRACMSREFLLMKRNSFIYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYAL 581
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
VIL+VDGFPE++MT+SRL VFYK RDLCFYPAWAY IPA+ILK+PLS +ES VWTSLTYY
Sbjct: 582 VILLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYY 641
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IG+SPE GRF+RQF+LFF+VHL+S+S+FR AS+ RT+ S G+ AIL++LLFGGFI
Sbjct: 642 VIGYSPEFGRFLRQFILFFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFI 701
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IP+ SMP WL+W FW+ P+TYGEIGL VNEFLAPRW+K +S NTT G +TLE+RGLNFD
Sbjct: 702 IPQPSMPDWLKWAFWISPMTYGEIGLAVNEFLAPRWQKTLSTNTTLGRETLENRGLNFDG 761
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV-GSDRDR 540
+WIS+ AL G T++FN FTLAL+FL+ PGKSR +IS+EK +LQ + G+ ++
Sbjct: 762 YLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEK 821
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
+ P K G +M+LPF+PLTV+F+D++YYVD P MR+ GF Q +L
Sbjct: 822 ESKNPPPKTTKEADIG-------RMVLPFQPLTVSFQDVQYYVDTPVEMRQKGFAQKKLH 874
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LL D+TG+ RPG+LTALMGVSGAGKTTLMDVL+GRKT G IEG+IRIGGYPKVQ TFARI
Sbjct: 875 LLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARI 934
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSP IT+EES++FSAWLRLS QIDSKTKAEFVNEVL+TIELDGIKD+LVG+
Sbjct: 935 SGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGM 994
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPTSGLDARAAA VMRAVKNVV+TGRT+VC
Sbjct: 995 PGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVC 1054
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSIDIFEAFD+L+L+K GG +IY GPLGQHS +VIEYFE IPGV KI++NYNPATW
Sbjct: 1055 TIHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATW 1114
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
MLEV+S S E +LGVDFAQIY++S LY+ NKELVKQLS P GS+DLHFPT F +NGW Q
Sbjct: 1115 MLEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQ 1174
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FK+C+WK +LSYWR+PSYN+ R + SLLFGILFW++GK++ NQQ VFN+LG+++ A
Sbjct: 1175 FKSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVA 1234
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+F GI NCS V+P VT ERTVLYRE+FAGMYS WAYS AQV +E+PYLFIQ +IYVIIT
Sbjct: 1235 VIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIIT 1294
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPMIGY+ S YKIFW FY MFC LLY+NY+GML+V++TP+ VASIL+S+FY++ NLF G
Sbjct: 1295 YPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAG 1354
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F IP+PQ+PKWW W +YL PTSW + GML+SQYGDI K+I FG+ KTV+ FL DY+GF
Sbjct: 1355 FLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFH 1414
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L VV ++LI FP+ FA LF Y I LNFQRR
Sbjct: 1415 HDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556558|ref|XP_002519313.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223541628|gb|EEF43177.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1703 bits (4411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1148 (70%), Positives = 943/1148 (82%), Gaps = 44/1148 (3%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
EV + EK AGI PDPDVDAYMKA+S EGL+++LQTDYILKILGLD+CADTMVGD M+RG+
Sbjct: 277 EVSRREKQAGIVPDPDVDAYMKAVSIEGLKSNLQTDYILKILGLDMCADTMVGDAMKRGI 336
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTTFQIVS L+HLVHITDATAL+SLLQP
Sbjct: 337 SGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTTFQIVSCLQHLVHITDATALVSLLQP 396
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDDVILMAEGKIVY+GP S C FFE CGFRCP RK VADFLQEVISRKDQ Q
Sbjct: 397 APETFDLFDDVILMAEGKIVYNGPRSSICNFFEDCGFRCPPRKAVADFLQEVISRKDQGQ 456
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW D Y YVSVD F+ KFK H G +EEL++ F++SE HK+A+SFKKYSL K EL
Sbjct: 457 YWCRTDQAYDYVSVDLFVKKFKESHFGQKLNEELSKPFDRSECHKSALSFKKYSLPKLEL 516
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYAL 301
K C REFLLMKRN +YVFK+ QLV I+++TMTV LR+ L VD++HAN Y+GA+FYAL
Sbjct: 517 FKACTRREFLLMKRNYFVYVFKTAQLVTISAITMTVLLRTRLGVDVLHANDYMGAIFYAL 576
Query: 302 VILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYY 361
++L+VDG PE+ MT+SRLAVFYK ++LCFYPAWAY IPA+ILK+PLS LE+FVWTSLTYY
Sbjct: 577 LLLLVDGLPELQMTVSRLAVFYKQKELCFYPAWAYVIPATILKLPLSFLEAFVWTSLTYY 636
Query: 362 IIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFI 421
+IGFSPE GRF RQ LL F VHLTSIS+FR IASIF+T S IG++ I++ +LFGG+I
Sbjct: 637 VIGFSPEAGRFFRQLLLLFMVHLTSISMFRLIASIFQTGVASVTIGSLFIVINVLFGGYI 696
Query: 422 IPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFDS 481
IPK SMP WL+WGFW+CPL YGEIGL VNEFLAPRW++
Sbjct: 697 IPKPSMPPWLDWGFWICPLAYGEIGLGVNEFLAPRWQQS--------------------- 735
Query: 482 SFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRS 541
++L + T A PG++R +ISYEKY +LQ+Q D D+DR
Sbjct: 736 -----------NVSLLTEVIGTHA-----APGRTRAIISYEKYNKLQEQVDNNHVDKDRR 779
Query: 542 PTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQL 601
+DA + TGPK G +M+LPFEPL +TF+DL+YYVD PSAMRK GF Q +LQL
Sbjct: 780 LSDARIMPNTGPKNG-------RMVLPFEPLAMTFQDLQYYVDTPSAMRKRGFAQKKLQL 832
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L+DITG FRPG LTALMGVSGAGKTTLMDVLSGRKTGG I GDIRIGGYPKVQ TFARIS
Sbjct: 833 LTDITGAFRPGNLTALMGVSGAGKTTLMDVLSGRKTGGTINGDIRIGGYPKVQDTFARIS 892
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
GY EQ DIHSP ITVEES+++SAWLRL ++ D KTK+EFVNEVL+TIELD IKDSLVG+P
Sbjct: 893 GYVEQTDIHSPQITVEESVIYSAWLRLPSETDPKTKSEFVNEVLETIELDEIKDSLVGMP 952
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
G++GLSTEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA VMRA KNVVETGRTVVCT
Sbjct: 953 GISGLSTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAAKNVVETGRTVVCT 1012
Query: 782 IHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWM 841
IHQPSIDIFEAFD+L+L+K GGRIIY GPLGQ S +VIEYFE +PGV KIKDNYNPATWM
Sbjct: 1013 IHQPSIDIFEAFDELILLKIGGRIIYSGPLGQRSSRVIEYFENVPGVPKIKDNYNPATWM 1072
Query: 842 LEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQF 901
LEV+S S E +LGVDFAQIY ESTLY+ENKEL+KQL P GSK+L F T FPQNGWEQF
Sbjct: 1073 LEVTSKSAEAELGVDFAQIYEESTLYKENKELIKQLQKPMPGSKELQFSTRFPQNGWEQF 1132
Query: 902 KACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961
KAC+WKH+LSYWRNPSYNL RIVF A S++FG LFWQ+GKKI NQQD+ I G++++A
Sbjct: 1133 KACLWKHHLSYWRNPSYNLTRIVFMIAGSIIFGALFWQQGKKINNQQDLLIIFGSMYAAV 1192
Query: 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITY 1021
+FFGI NCS +P V TERTV+YRE+FAGMYSPWAYSFAQVLVE+PY+F A+IYV+ITY
Sbjct: 1193 IFFGINNCSTALPYVVTERTVMYREKFAGMYSPWAYSFAQVLVELPYMFAIAIIYVVITY 1252
Query: 1022 PMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGF 1081
PM+GY S YKIFW+FY +FC+LL FNYMG LIVSLTPNIQVASILAS Y++L LF G
Sbjct: 1253 PMVGYSMSAYKIFWAFYAVFCSLLSFNYMGRLIVSLTPNIQVASILASFSYAVLVLFSGL 1312
Query: 1082 TIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFDH 1141
+P+P+IPKWW W YY+CPTSWVL G+L+SQ+GD++KEISAFG+ KTVSAFL+DYFGF H
Sbjct: 1313 VVPRPRIPKWWIWLYYMCPTSWVLNGLLTSQFGDVNKEISAFGENKTVSAFLEDYFGFYH 1372
Query: 1142 DFLGVVGI 1149
+ LGVVG+
Sbjct: 1373 NLLGVVGV 1380
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1174 | ||||||
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.991 | 0.802 | 0.623 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.990 | 0.823 | 0.619 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.997 | 0.797 | 0.553 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.985 | 0.795 | 0.530 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.985 | 0.802 | 0.526 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.989 | 0.799 | 0.527 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.983 | 0.811 | 0.515 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.994 | 0.822 | 0.505 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.521 | 0.432 | 0.558 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.523 | 0.431 | 0.538 | 3.20000000008e-314 |
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3965 (1400.8 bits), Expect = 0., P = 0.
Identities = 733/1175 (62%), Positives = 909/1175 (77%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV K EK GI PD +VDAYMKAIS EGL+ SLQTDYILKILGLDICA+ ++GD MRRG
Sbjct: 286 MEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRG 345
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST FQIV L+ HI+ AT L+SLLQ
Sbjct: 346 ISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQ 405
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPE++DLFDD++LMA+G+IVYHGP FFE CGFRCP+RKGVADFLQEVIS+KDQA
Sbjct: 406 PAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQA 465
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW +D PYS+VSV+ KFK +G ++ L++ +++S+ HK+A+SF YSL WE
Sbjct: 466 QYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWE 525
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L C +RE+LLMKRN +Y+FK+ QLV+ A +TMTVF+R+ + +DIIH N+Y+ ALF+A
Sbjct: 526 LFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFA 585
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+IL+VDGFPE++MT RLAVFYK + LCFYPAWAYAIPA++LKVPLS ES VWT L+Y
Sbjct: 586 LIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSY 645
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y+IG++PE RF +QF+L FAVH TSIS+FR +A+IF+TV S G+
Sbjct: 646 YVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGF 705
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
P SMP+WL+WGFW PL+YGEIGL+VNEFLAPRW ++ N T G L++RG++++
Sbjct: 706 VIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFTLGRTILQTRGMDYN 765
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQD-QKDCVGSDRD 539
YW+S+ AL+GFT+LFN +FTLALTFLK P SR +IS +K ELQ +K S
Sbjct: 766 GYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSSVR 825
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
+ TD+P+K KM+LPF+PLTVTF+DL Y+VD+P MR G++Q +L
Sbjct: 826 KKTTDSPVKTEE----------EDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKL 875
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFAR 659
QLLSDITG FRPGILTALMGVSGAGKTTL+DVL+GRKT +PKVQ TFAR
Sbjct: 876 QLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFAR 935
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+SGYCEQ DIHSPNITVEES+++SAWLRL+ +ID+ TK +FV +VL+TIELD IKDSLVG
Sbjct: 936 VSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVG 995
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA VMRAVKNV +TGRT+V
Sbjct: 996 VTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 1055
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+LVL+K GGR+IY GPLGQHS +IEYFE +P + KIKDN+NPAT
Sbjct: 1056 CTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPAT 1115
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WML+VSS S+E +LGVDFA+IY +S LY+ N ELVKQLS P GS D+ F F Q+ W
Sbjct: 1116 WMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWG 1175
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
QFK+ +WK NLSYWR+PSYNL+R++ T SL+FG LFW++G+ + QQ +F + GA++
Sbjct: 1176 QFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYG 1235
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
+F GI NC+ + TER V+YRERFAGMYS AY+ QV+ E+PY+FIQA +VI+
Sbjct: 1236 LVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIV 1295
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
TYPMIG++ S YK+FWS Y MFC+LL FNY+ M +VS+TPN VA+IL S FY NLF
Sbjct: 1296 TYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFS 1355
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
GF IP+ Q+P WW W YYL PTSW L G +SSQYGDI +EI+ FG++ TV+ FL DYFGF
Sbjct: 1356 GFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGF 1415
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L V +V I FPI AS+FA+F+G+LNFQRR
Sbjct: 1416 HHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3949 (1395.2 bits), Expect = 0., P = 0.
Identities = 727/1174 (61%), Positives = 913/1174 (77%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
MEV K EK GI PDP++DAYMKAIS +GL+ SLQTDYILKILGLDICA+T+VG+ M+RG
Sbjct: 251 MEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRG 310
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST FQI+ L+ + HIT+AT +SLLQ
Sbjct: 311 ISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQ 370
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
PAPE++DLFDD++LMAEGKIVYHGP KFFE CGF+CP+RKGVADFLQEVIS+KDQ
Sbjct: 371 PAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQG 430
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW Q+ P+S+VSVD +FK +G +E L++ ++ S+ HK+A+SF YSL KWE
Sbjct: 431 QYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWE 490
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYA 300
L + C +REFLLMKRN +Y+FK+ QLV+ A +TMTVF+R+ + +DIIH N+Y+ LF+A
Sbjct: 491 LFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNSYMSCLFFA 550
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
V+L+VDG PE++MT+ RL+VFYK + LCFYPAWAYAIPA++LK+PLS ES VWT LTY
Sbjct: 551 TVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTY 610
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y+IG++PE RF RQF++ FAVH TSIS+FR IA+IF+T + G+
Sbjct: 611 YVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGF 670
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLNFD 480
P MP WL+WGFWV P++Y EIGL+VNEFLAPRW+K+ N T G LESRGLN+D
Sbjct: 671 AIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYD 730
Query: 481 SSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDR 540
YW+S+ AL+G T++FN +FTLAL+FLK P SR +IS +K ELQ KD S +
Sbjct: 731 DYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD--SSVKKN 788
Query: 541 SPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQ 600
P D+ +K P G KMILPF+PLT+TF+DL YYVD+P M+ G+N+ +LQ
Sbjct: 789 KPLDSSIKTNEDP--G-------KMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQ 839
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
LLS+ITG FRPG+LTALMG+SGAGKTTL+DVL+GRKT + KVQ TFAR+
Sbjct: 840 LLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARV 899
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
SGYCEQ DIHSP+ITVEES+++SAWLRL +I+ +TK FV +VL+TIEL+ IKD+LVG+
Sbjct: 900 SGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGV 959
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
GV+GLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAA VMRAVKNV ETGRT+VC
Sbjct: 960 AGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVC 1019
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATW 840
TIHQPSI IFEAFD+LVL+K GGR+IY GPLGQHS VIEYF+ IPGV KI+D YNPATW
Sbjct: 1020 TIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATW 1079
Query: 841 MLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQ 900
MLEV+S S+ET+L +DFA+IY ES LY+ N ELVK+LS P GS DLHF F QN WEQ
Sbjct: 1080 MLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQ 1139
Query: 901 FKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSA 960
FK+C+WK +LSYWR+PSYNL+RI T S +FG+LFW +GKKI QQ++F +LGA++
Sbjct: 1140 FKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGL 1199
Query: 961 AVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIIT 1020
+F GI NC+ + TER V+YRERFAGMYS +AY+ AQV+ E+PY+FIQ+ +VI+
Sbjct: 1200 VLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVI 1259
Query: 1021 YPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCG 1080
YPMIG++ S K+FWS Y MFCNLL FNY+ M ++S+TPN VA+IL S F++ N+F G
Sbjct: 1260 YPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAG 1319
Query: 1081 FTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFD 1140
F IPKPQIPKWW W YY+ PTSW L SSQYGDI ++I+AFG+ KTV++FL+DYFGF
Sbjct: 1320 FLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFH 1379
Query: 1141 HDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
HD L + I+LI FPI A+++A+F+ +LNFQ+R
Sbjct: 1380 HDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3438 (1215.3 bits), Expect = 0., P = 0.
Identities = 657/1188 (55%), Positives = 844/1188 (71%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK AGIFP+ DVD +MKA +A+G++NSL TDY LKILGLDIC DT+VGD M RG+
Sbjct: 284 ELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGI 343
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTTFQIV L+ +VH+ +AT L+SLLQP
Sbjct: 344 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQP 403
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+IL++EG+IVY GP +FFE GF+CP+RKG ADFLQEV S+KDQ Q
Sbjct: 404 APETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQEQ 463
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW + PY Y+ V +F +++K+ H+G ELA F+KS HK A+ F KYS++K EL
Sbjct: 464 YWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKREL 523
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAV-DIIHANAYLGALFYA 300
LK+C +E+LLM+RN+ YVFK+ Q+VIIA++T T+FLR+E+ + AN Y+GAL +
Sbjct: 524 LKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLFG 583
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
++I + +GF EM M +SRL VFYK RDL FYP+W +++P +L +P S+LES W +TY
Sbjct: 584 MIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTY 643
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y IGF+P+ RF +QFLL F + + SLFR IAS+ RT+ ++ G +
Sbjct: 644 YSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGGF 703
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-EKVISGNTTA--GMQTLESRGL 477
PK +P W W +WV PLTY GL VNE APRW K+ S N+T G L + +
Sbjct: 704 LLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDV 763
Query: 478 NFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSD 537
++YWIS+GAL+ FT LFN +FTLALT+L P GK L+ E+ + KD +
Sbjct: 764 YHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGKDPMR-- 821
Query: 538 RDRSPTDAPLKAATGPKRGERPLA--------HRK-MILPFEPLTVTFEDLRYYVDIPSA 588
R S D + R R A ++K M+LPF PL ++F+D++Y+VD+P
Sbjct: 822 RSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGE 881
Query: 589 MRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXX 648
MR G +TRLQLL +TG FRPG+LTALMGVSGAGKTTLMDVL+GRKT
Sbjct: 882 MRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRIS 941
Query: 649 XYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
+PKVQ TFARISGYCEQ DIHSP +TV ES++FSA+LRL ++ K FV++V++ +
Sbjct: 942 GFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELV 1001
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
ELD ++DS+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMRAV
Sbjct: 1002 ELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 1061
Query: 769 KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGV 828
+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG++IY GPLGQ+S KV+EYFE PGV
Sbjct: 1062 RNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGV 1121
Query: 829 LKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLH 888
KI + YNPATWMLE SS + E +L VDFA++Y +S L+Q NK LVK+LS P G+ DL+
Sbjct: 1122 SKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLY 1181
Query: 889 FPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQ 948
F T F QN W QFK+C+WK +YWR+P YNL+R +FT A SLL G +FWQ G N
Sbjct: 1182 FATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAG 1241
Query: 949 DVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPY 1008
D+ ++GAL++A +F GI NCS V P+V ERTV YRER AGMYS Y+ +QV E+PY
Sbjct: 1242 DLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPY 1301
Query: 1009 LFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILA 1068
+ IQ V Y +I Y M+G+ W K FW + + + LY+ Y GM+ VSLTPN QVASI A
Sbjct: 1302 VLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFA 1361
Query: 1069 SSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAK- 1127
S+FY + NLF GF IP+P+IPKWW W Y++CP +W + G++ SQYGD++ I G A
Sbjct: 1362 SAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPD 1421
Query: 1128 -TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
TV +++D++GF DF+G V VLI F + FA +FA+ I LNFQ R
Sbjct: 1422 LTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3256 (1151.2 bits), Expect = 0., P = 0.
Identities = 627/1183 (53%), Positives = 827/1183 (69%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK GI PDP +DA+MK+I+ G E SL TDY+LKILGLDICAD + GD MRRG+
Sbjct: 288 ELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGI 347
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKRLTTGE++VGP RALFMDEIS GLDSSTTFQI F++ LVHI+D T +ISLLQP
Sbjct: 348 SGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQP 407
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDD+IL++EG+IVY GP +FFE GF+CP+RKGVADFLQEV S+KDQ Q
Sbjct: 408 APETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQ 467
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW+ ++ PY+YVSV F + F H G E ++K++ H A+ +KY ++ WEL
Sbjct: 468 YWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWEL 527
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIH-ANAYLGALFYA 300
K C RE+LLMKRNS +YVFK+ Q+ I++ +TMTV+LR+E+ V + + GA+F++
Sbjct: 528 FKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFS 587
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+ ++ +G E+ T+ RL VFYK RD FYP WA+A+PA +LK+PLSL+ES +W LTY
Sbjct: 588 LINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTY 647
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y IGF+P RF RQ L +F V+ ++SLFR + +I RT +S +IGT
Sbjct: 648 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGF 707
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKV-----ISGNTTAGMQTLESR 475
K + W+ W +++ P+ YG+ + +NEFL RW I+ T G L+SR
Sbjct: 708 IIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTV-GEVLLKSR 766
Query: 476 GLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVG 535
G + ++WI I AL+GF++LFN + LAL +L P G S+ + E +D++ G
Sbjct: 767 GFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEG----KDKQK--G 820
Query: 536 SDRDRSPTDAPLKAAT--GPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNG 593
+R + L +++ GPKRG M+LPF+PL++ F ++ YYVD+PS M+ G
Sbjct: 821 ENRGTEGSVVELNSSSNKGPKRG--------MVLPFQPLSLAFNNVNYYVDMPSEMKAQG 872
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 653
RLQLL D+ G FRPGILTAL+GVSGAGKTTLMDVL+GRKT YPK
Sbjct: 873 VEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKN 932
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
Q TFAR+SGYCEQNDIHSP++TV ES+++SAWLRLST ID KT+ FV EV++ +EL +
Sbjct: 933 QTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPL 992
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
++S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMR V+N V+
Sbjct: 993 RNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1052
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKD 833
TGRTVVCTIHQPSIDIFE+FD+L+LMK GG++IY G LG HS K++EYFE + GV KI D
Sbjct: 1053 TGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKIND 1112
Query: 834 NYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHF 893
YNPATWML+V++ SME+Q+ +DFAQI+ S+LY+ N+EL+K LS+P GSKD++F T +
Sbjct: 1113 GYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKY 1172
Query: 894 PQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNI 953
Q+ Q KAC WK SYWR+P YN IR + T + +LFG++FWQ G K +N+QD+ N
Sbjct: 1173 AQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNF 1232
Query: 954 LGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQA 1013
GA+++A +F G +N + V P + ERTV YRE+ AGMYS Y+ +QV VE+ Y IQ
Sbjct: 1233 FGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQT 1292
Query: 1014 VIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYS 1073
+Y +I Y MIG +W+ K W +Y M + +YF GM++++LTPN Q+A I S F S
Sbjct: 1293 GVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLS 1352
Query: 1074 MLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDK--EISAFGKAKTVSA 1131
+ NLF GF IP+PQIP WW W Y+ P +W L G+++SQ GD D IS G +
Sbjct: 1353 LWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDID-LKT 1411
Query: 1132 FLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
L + FGF+HDFL VV +V I + +LF +FAY I LNFQRR
Sbjct: 1412 LLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3251 (1149.5 bits), Expect = 0., P = 0.
Identities = 620/1177 (52%), Positives = 822/1177 (69%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK AGIFP+ DVD +MKA +A+G+++SL TDY LKILGLDIC DT+VGD M RG+
Sbjct: 282 ELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGI 341
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTTFQIV L+ +VH+T+AT LISLLQP
Sbjct: 342 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQP 401
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+IL++EG+IVY GP + +FFE GF+CP+RKG ADFLQEV S+KDQ Q
Sbjct: 402 APETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQ 461
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW + PY Y+ V +F + FK H+G EL+ ++KS+ HK A+ F KYS+ K EL
Sbjct: 462 YWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTEL 521
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAV-DIIHANAYLGALFYA 300
LK+C +E++LMKRNS YVFK+ Q++IIA++T T++LR+E+ + I AN Y+G+L +A
Sbjct: 522 LKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFA 581
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
+++ + +G EM MTI RL VFYK RDL F+P W Y +P +L +P+S+ ES W +TY
Sbjct: 582 MIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTY 641
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y IG++P+ RF +QFL+ F + + +FR IAS RT+ ++ G +
Sbjct: 642 YSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGF 701
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTAGMQTLESRGLN-F 479
P+ +P W W +W+ PL+Y +TVNE APRW +SGN+T + T + F
Sbjct: 702 LLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVF 761
Query: 480 DSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRD 539
D W IG +G + F +F T L + L ++ ++ G
Sbjct: 762 DDK-NWYWIG--VGGLLGFTVIFNGFFTLALT--YLDPLGKAQAILPKEEDEEAKGKAGS 816
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
T+ +A K+G M+LPF PL ++F+D++Y+VD+P+ MR+ G +TRL
Sbjct: 817 NKETEMESVSA---KKG--------MVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRL 865
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFAR 659
QLL +T FRPG+LTALMGVSGAGKTTLMDVL+GRKT +PK Q TFAR
Sbjct: 866 QLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFAR 925
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
ISGYCEQ DIHSP +TV ES++FSA+LRL+ ++ + K FV++V++ +EL ++D++VG
Sbjct: 926 ISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVG 985
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
LPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMRAV+N V+TGRTVV
Sbjct: 986 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 1045
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+L+LMK GG +IY GPLG++S KV+EYFE PGV KI + YNPAT
Sbjct: 1046 CTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPAT 1105
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WMLE SS + E +LGVDFA++Y+ S L Q NK LV++LS P G+ DL+F T F QN W
Sbjct: 1106 WMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWG 1165
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
QFK+C+WK +YWR+P YNL+R +FT A SL+ G +FWQ G K N QD+ ++GA+++
Sbjct: 1166 QFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYA 1225
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
A VF GI NCS V P+V ERTV YRE+ AGMYS Y+ +QV E+PY+ IQ Y +I
Sbjct: 1226 AVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLI 1285
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
Y M+G+ W K W + + + LY+ Y GM+ VSLTPN QVASI AS+FY + NLF
Sbjct: 1286 IYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFS 1345
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAK--TVSAFLDDYF 1137
GF IP+P+IPKWW W Y++CP +W + G+++SQYGD++ I+ G A TV ++ D +
Sbjct: 1346 GFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQY 1405
Query: 1138 GFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
GF+ D++G V VL+ F + FA +FA+ I LNFQ R
Sbjct: 1406 GFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3227 (1141.0 bits), Expect = 0., P = 0.
Identities = 622/1179 (52%), Positives = 819/1179 (69%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + E+ AGI PDP++DA+MK+I+ G E SL TDY+LK+LGLDICADT+VGD MRRG+
Sbjct: 286 ELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGI 345
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQ+KRLTTGE++VGP ALFMDEIS GLDSSTTFQI F++ LVHI D T +ISLLQP
Sbjct: 346 SGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQP 405
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDD+IL++EG+IVY G +FFE GF+CP+RKG+ADFLQEV S+KDQ Q
Sbjct: 406 APETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQ 465
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW+ ++HPYSYVSV F + F + H G E ++K++ H A+ +KY ++ +L
Sbjct: 466 YWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDL 525
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIH-ANAYLGALFYA 300
K C RE+LLMKRNS +YVFK+ Q+ I++ + MTV+ R+E+ V + + GALF++
Sbjct: 526 FKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFS 585
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L+ L+ +G E+ T+ RL VF+K RD FYP WA+A+P +LK+PLSL+ES +W +LTY
Sbjct: 586 LINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTY 645
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y IGF+P RF RQ L +F V+ ++SLFR + ++ RT ++ + GT+A
Sbjct: 646 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGF 705
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNT----TAGMQTLESRG 476
K +PSWL W ++ P+ YG+ L +NEFL RW + T G L+SRG
Sbjct: 706 IISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRG 765
Query: 477 LNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS 536
+ ++WI IGAL+GFT+LFN + +AL +L P G S+ E E +D+ S
Sbjct: 766 FFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVE---EGKDKHKGSHS 822
Query: 537 DRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQ 596
S + ++ GPK+G M+LPF+PL++ F ++ YYVD+P+ M+ G
Sbjct: 823 GTGGSVVELTSTSSHGPKKG--------MVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEG 874
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHT 656
RLQLL D+ G FRPG+LTAL+GVSGAGKTTLMDVL+GRKT YPK Q T
Sbjct: 875 DRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQAT 934
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
FAR+SGYCEQNDIHSP++TV ES+++SAWLRLS ID+KT+ FV EV++ +EL +++S
Sbjct: 935 FARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNS 994
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMR V+N V+TGR
Sbjct: 995 IVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1054
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYN 836
TVVCTIHQPSIDIFE+FD+L+LMK GG++IY G LG HS K++EYFE I GV KIKD YN
Sbjct: 1055 TVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYN 1114
Query: 837 PATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQN 896
PATWML+V++ SME+Q+ VDFAQI+ S++ + N+EL+K+LS+P GS DL+F T + Q
Sbjct: 1115 PATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQP 1174
Query: 897 GWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGA 956
Q KAC WK S WR P YN IR + T + +LFG+LFWQ G KI+ +QD+ N GA
Sbjct: 1175 FSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGA 1234
Query: 957 LFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIY 1016
+++A +F G N + V P V ERTV YRE+ AGMYS Y+ +QV VE+ Y IQ +Y
Sbjct: 1235 MYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVY 1294
Query: 1017 VIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLN 1076
+I Y MIGY W+ K FW +Y M +YF GM++V+LTPN Q+A I S F S N
Sbjct: 1295 TLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWN 1354
Query: 1077 LFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAK-TVSAFLDD 1135
LF GF IP+PQIP WW W Y+ P +W L G+++SQ GD D + G ++ L +
Sbjct: 1355 LFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKN 1414
Query: 1136 YFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
FGFD+DFL VV +V I + ++F FAY I LNFQRR
Sbjct: 1415 GFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3219 (1138.2 bits), Expect = 0., P = 0.
Identities = 606/1175 (51%), Positives = 829/1175 (70%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK A I PDPD+D +MKA+S G + ++ TDYILKILGL++CADTMVGD M RG+
Sbjct: 267 ELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGI 326
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKR+TTGE++VGP+RALFMDEIS GLDSSTT+QIV+ L++ VHI + TALISLLQP
Sbjct: 327 SGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQP 386
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETF+LFDD+IL+AEG+I+Y GP + +FFE GF+CP RKGVADFLQEV S+KDQ Q
Sbjct: 387 APETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQ 446
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW +D PY ++ V +F F++ H+G +ELA F+K++ H A++ KKY + EL
Sbjct: 447 YWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKEL 506
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDI-IHANAYLGALFYA 300
+KT +RE+LLMKRNS +Y FK QL+++A +TMT+F R+E+ + + Y GALF+
Sbjct: 507 VKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFI 566
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
L++L+ +G E++MTI++L VFYK RDL FYPAW Y++P +LK+P+S +E+ + T +TY
Sbjct: 567 LMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITY 626
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXXX 420
Y+IGF P VGR +Q++L ++ + +LF+ +A++ R + V+ G A
Sbjct: 627 YVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGV 686
Query: 421 XXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNT-TAGMQTLESRGLNF 479
+ + W WG+W+ P+ YG+ + NEF W + + ++ T G+ L+SRG
Sbjct: 687 VLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLP 746
Query: 480 DSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRD 539
+ +YWI GAL+GF +LFN FTLALTFL GK + +I+ E D+ + +
Sbjct: 747 HAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEP---ASDETELQSA--- 800
Query: 540 RSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRL 599
RS + ++A KRG M+LPFEP ++TF+++ Y VD+P M + G + RL
Sbjct: 801 RS--EGVVEAGANKKRG--------MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRL 850
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFAR 659
LL + G FRPG+LTALMGVSGAGKTTLMDVL+GRKT YPK Q TFAR
Sbjct: 851 VLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFAR 910
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
ISGYCEQ DIHSP++TV ES+V+SAWLRL ++D + F+ EV++ +EL ++ +LVG
Sbjct: 911 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVG 970
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
LPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA VMR V+N V+TGRTVV
Sbjct: 971 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1030
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPAT 839
CTIHQPSIDIFEAFD+L L+K GG IY GPLG S +I YFE I G+ KI + YNPAT
Sbjct: 1031 CTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPAT 1090
Query: 840 WMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWE 899
WMLEVS+ S E LGVDFAQ+Y+ S LY+ NKEL+K+LS P+ GSKDL+FPT + Q+
Sbjct: 1091 WMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLT 1150
Query: 900 QFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFS 959
Q A +WK + SYWRNP Y +R +FT ++L+FG +FW G K K +QD+ N +G++++
Sbjct: 1151 QCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYT 1210
Query: 960 AAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1019
A +F G+ N + V P+V ERTV YRE+ AGMYS Y+FAQV +E+PY+ +QA++Y +I
Sbjct: 1211 AVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLI 1270
Query: 1020 TYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFC 1079
Y MIG+ W+ K FW + M+ + L F + GM+ V++TPN +AS+++S+FY + NLF
Sbjct: 1271 VYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFS 1330
Query: 1080 GFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGF 1139
GF IP+P +P WW W Y+LCP +W L G+++SQ+GDI + ++ +V F+ +++G+
Sbjct: 1331 GFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMA--DSNMSVKQFIREFYGY 1388
Query: 1140 DHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
FLGVV + +IFP+LFA +FA I NFQ+R
Sbjct: 1389 REGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3130 (1106.9 bits), Expect = 0., P = 0.
Identities = 596/1180 (50%), Positives = 816/1180 (69%)
Query: 1 MEVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRG 60
+E+ + EKLAGI PD D+D +MK+++ G+E SL +Y++KILGLD CADT+VGD M +G
Sbjct: 247 LELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKG 306
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQKKRLTTGEL+VGP R LFMDEISNGLDSSTT QI+ +++H H + T +ISLLQ
Sbjct: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQ 366
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQA 180
P+PET++LFDDVILM+EG+I+Y GP FF GF CPDRK VADFLQEV S+KDQ
Sbjct: 367 PSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQ 426
Query: 181 QYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWE 240
QYW PY YV +F F++ G ++L F+K H A+S +Y + K E
Sbjct: 427 QYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSE 486
Query: 241 LLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIH-ANAYLGALFY 299
LLK + LMK+N+ +YVFK QL+++A +TMTVF R+ + + I N YLG+L++
Sbjct: 487 LLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYF 546
Query: 300 ALVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLT 359
++VI++ +GF E+ M +++L V YKHRDL FYP+WAY +P+ +L +P S++ES W ++T
Sbjct: 547 SMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVT 606
Query: 360 YYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAXXXXXXXXX 419
YY IG+ P RF++QFLL+F++H S+ LFR + S+ R + V+ G+ A
Sbjct: 607 YYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGG 666
Query: 420 XXXPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVISGNTTA---GMQTLESRG 476
+ S+PSW WG+W+ PL Y + +VNEFL W+K +GN T+ G+ L+ R
Sbjct: 667 FIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKT-AGNHTSDSLGLALLKERS 725
Query: 477 LNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS 536
L + +YWI + AL+G+T+LFN +FTL L L P GK + ++S E EL +++
Sbjct: 726 LFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE---ELDEREKKRKG 782
Query: 537 DRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQ 596
D L+ + G G+ +R M+LPF+PL+++F ++ YYVD+P +++ G +
Sbjct: 783 DEFVVELREYLQHS-GSIHGKY-FKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHT 656
RLQLL +ITG FRPG+LTAL+GVSGAGKTTLMDVL+GRKT +PK Q T
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
FARISGYCEQND+HSP +TV ES++FSA LRL IDS+T+ FV+EV++ +EL + +
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
LVGLPGV+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAA VMR V+N+V TGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYN 836
T+VCTIHQPSIDIFE+FD+L+ MK GG +IY GPLGQ SC++I+YFE I GV KIK +N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 837 PATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQN 896
PA WML+V++++ E +LGVDFA+IYR S L Q NKEL++ LS PS +K++ FPT + Q+
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQS 1140
Query: 897 GWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGA 956
+ QF AC+WK NLSYWRNP Y +R +T +SL+ G + W+ G K QQ +FN +G+
Sbjct: 1141 LYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGS 1200
Query: 957 LFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIY 1016
+++A +F GI N + P+V+ ER V YRER AGMYS ++FAQV +E PY+ Q+ IY
Sbjct: 1201 MYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIY 1260
Query: 1017 VIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLN 1076
I Y M + WS K W + M+ +++YF + GM+ ++TPN VASI+A+ FY + N
Sbjct: 1261 STIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWN 1320
Query: 1077 LFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEIS-AFGKAKT-VSAFLD 1134
LF GF IP +IP WW W Y+ P +W L G+L SQYGD ++ + + G + V L+
Sbjct: 1321 LFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLE 1380
Query: 1135 DYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174
D G+ HDFLGV I+++ F + F+ +FA+ I NFQRR
Sbjct: 1381 DVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1895 (672.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 343/614 (55%), Positives = 462/614 (75%)
Query: 563 RKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSG 622
R M+LPF PLT++F+++ YYVD+P M++ G ++ +LQLL ++TG FRPG+LTALMGVSG
Sbjct: 803 RGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSG 862
Query: 623 AGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESIVF 682
AGKTTLMDVL+GRKT +PK Q TFARISGYCEQNDIHSP +TV+ES+++
Sbjct: 863 AGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIY 922
Query: 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742
SA+LRL ++ K FV+EV++ +EL+ +KD++VGLPG+ GLSTEQRKRLTIAVELVA
Sbjct: 923 SAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVA 982
Query: 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
NPSIIFMDEPTSGLDARAAA VMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+L+K G
Sbjct: 983 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1042
Query: 803 GRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYR 862
G++IY GPLGQ+S K+IEYF+ I GV KIK+ YNPATWMLEVSS + E +L +DFA+ Y+
Sbjct: 1043 GQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYK 1102
Query: 863 ESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIR 922
S+LYQ+NK LVK+LS+P G+ DL+F T F Q+ QFK+C+WK ++YWR P YNL R
Sbjct: 1103 TSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLAR 1162
Query: 923 IVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTV 982
FT A +++ G +FW+ G K +N D+ ++GA+++A +F G+ N S V PL+ ER+V
Sbjct: 1163 FFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSV 1222
Query: 983 LYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFC 1042
YRER A MYS Y+ AQV+ E+PY+ IQ Y +I Y M+ + W+ K FW ++ F
Sbjct: 1223 FYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFM 1282
Query: 1043 NLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTS 1102
+ LYF Y GM+ V+LTPN QVA++ A +FY + NLF GF IP+P+IPKWW W Y++CP +
Sbjct: 1283 SFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVA 1342
Query: 1103 WVLKGMLSSQYGDIDKEISAFGKAK--TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFAS 1160
W + G++ SQYGD++ I G A T+ ++++++G+D DF+ + VL+ F + FA
Sbjct: 1343 WTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAF 1402
Query: 1161 LFAYFIGELNFQRR 1174
+FA+ I LNFQ+R
Sbjct: 1403 MFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1742 (618.3 bits), Expect = 3.2e-314, Sum P(2) = 3.2e-314
Identities = 332/616 (53%), Positives = 438/616 (71%)
Query: 560 LAHRK-MILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALM 618
++ +K MILPF+PLT+TF ++ YYVD+P MR G +TRLQLLS+++G F PG+LTAL+
Sbjct: 811 ISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALV 870
Query: 619 GVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEE 678
G SGAGKTTLMDVL+GRKT +PK Q TFARISGY EQNDIHSP +TVEE
Sbjct: 871 GSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEE 930
Query: 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738
S+ FSA LRL +I + K EFV +V++ +ELD ++ +LVGLPG GLSTEQRKRLTIAV
Sbjct: 931 SLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAV 990
Query: 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798
ELVANPSIIFMDEPTSGLDARAAA VMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+L
Sbjct: 991 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1050
Query: 799 MKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFA 858
MK GG++IY G LG HS +++YF+ I GV I YNPATWMLEV++ ++E + ++FA
Sbjct: 1051 MKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFA 1110
Query: 859 QIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSY 918
+Y++S ++E + +KQLS P GS+ + F + + QN QF C+WK NL YWR+P Y
Sbjct: 1111 DLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEY 1170
Query: 919 NLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTT 978
NL+R+VFT + + G +FW G K + QD+ ++GAL+SA +F G+ N S V P+V+
Sbjct: 1171 NLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSI 1230
Query: 979 ERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFY 1038
ERTV YRE+ AGMY+P Y+ AQ LVE+PY+ Q ++Y +ITY IG+ + K
Sbjct: 1231 ERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLV 1290
Query: 1039 GMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYL 1098
MF YF + GM+ V LTPN +A++++S+FYS+ NL GF + KP IP WW W YY+
Sbjct: 1291 FMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYI 1350
Query: 1099 CPTSWVLKGMLSSQYGDIDKEISAFGKAKTVSAFLDDYFGFDHDFLGVVGIVLIIFPILF 1158
CP +W L+G++ SQ GD++ I+ TV F++ YFG+ + +GV VL+ F LF
Sbjct: 1351 CPVAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALF 1410
Query: 1159 ASLFAYFIGELNFQRR 1174
S FA + LNFQRR
Sbjct: 1411 FSAFALSVKYLNFQRR 1426
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5372 | 0.9965 | 0.8008 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.5358 | 0.9940 | 0.8009 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.5446 | 0.9940 | 0.8098 | N/A | no |
| Q9LFH0 | AB37G_ARATH | No assigned EC number | 0.6365 | 0.9914 | 0.8027 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.5331 | 0.9863 | 0.8075 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5336 | 0.9855 | 0.8057 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5358 | 0.9940 | 0.8009 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.6717 | 0.9906 | 0.8037 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1174 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-96 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-76 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-66 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-54 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-52 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-51 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-45 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-38 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-30 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-26 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 5e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-24 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-24 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-20 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-19 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-17 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-17 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-17 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-16 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-15 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-14 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-14 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 8e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-11 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-10 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-09 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-09 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-09 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-08 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-08 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-07 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-05 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-05 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-05 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-04 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-04 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-04 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-04 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-04 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-04 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-04 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 0.001 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 0.001 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 0.001 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 0.001 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.001 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 0.002 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.002 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 0.003 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.003 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.003 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.004 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1580 bits (4092), Expect = 0.0
Identities = 661/1201 (55%), Positives = 880/1201 (73%), Gaps = 36/1201 (2%)
Query: 2 EVIKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGV 61
E+ + EK AGIFP+ +VD +MKA + EG+++SL TDY LKILGLDIC DT+VGD M RG+
Sbjct: 278 ELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT+QIV L+ +VH+T+AT L+SLLQP
Sbjct: 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397
Query: 122 APETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQ 181
APETFDLFDD+IL++EG+IVY GP + +FFE CGF+CP+RKG ADFLQEV S+KDQ Q
Sbjct: 398 APETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ 457
Query: 182 YWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWEL 241
YW ++ PY Y+SV +F +FK+ H+G+ + EL+ F+KS+ HK A+ F KYS+ K EL
Sbjct: 458 YWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMEL 517
Query: 242 LKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAV-DIIHANAYLGALFYA 300
LK C +E+LLMKRN+ +YVFK+ Q++I+A++ TVFLR+E+ + Y+GAL ++
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577
Query: 301 LVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 360
++I + +GF E+ + I RL VFYK RDL F+P W + +P +L +P+S++ES VW +TY
Sbjct: 578 MIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITY 637
Query: 361 YIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420
Y IGF+PE RF +Q LL F + + +FR IAS+ RT+ ++ G + +L++ L GGF
Sbjct: 638 YSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF 697
Query: 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-EKVISGNTTA-GMQTLESRGLN 478
I+PK +P+W EW +WV PL+YG L VNE APRW K+ S N+T G L +
Sbjct: 698 ILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVF 757
Query: 479 FDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV---- 534
D ++YWI +GAL+GFT+LFN +FTLALT+L P GK + +IS E E++ ++D +
Sbjct: 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSL 817
Query: 535 -----------------GSDRDRSPTDAPLKAATG--PKRGERPLAHRKMILPFEPLTVT 575
+ D+ L+AA G PKRG M+LPF PL ++
Sbjct: 818 SSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRG--------MVLPFTPLAMS 869
Query: 576 FEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635
F+D+ Y+VD+P+ M++ G + RLQLL ++TG FRPG+LTALMGVSGAGKTTLMDVL+GR
Sbjct: 870 FDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929
Query: 636 KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK 695
KTGG IEGDIRI G+PK Q TFARISGYCEQNDIHSP +TV ES+++SA+LRL ++ +
Sbjct: 930 KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKE 989
Query: 696 TKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755
K FV+EV++ +ELD +KD++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 990 EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1049
Query: 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHS 815
LDARAAA VMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG++IY GPLG++S
Sbjct: 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNS 1109
Query: 816 CKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVK 875
K+IEYFE IPGV KIK+ YNPATWMLEVSS + E +LG+DFA+ Y+ S+LYQ NK LVK
Sbjct: 1110 HKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVK 1169
Query: 876 QLSSPSLGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGI 935
+LS+P G+ DL+F T + Q+ W QFK+C+WK +YWR+P YNL+R FT A +L+ G
Sbjct: 1170 ELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGT 1229
Query: 936 LFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPW 995
+FW+ G K N D+ ++GA+++A +F GI NCS V P+V ERTV YRER AGMYS
Sbjct: 1230 IFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSAL 1289
Query: 996 AYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIV 1055
Y+ AQV+ E+PY+ IQ Y +I Y M+ + W+ K FW ++ F + LYF Y GM+ V
Sbjct: 1290 PYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTV 1349
Query: 1056 SLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGD 1115
SLTPN QVA+I A++FY + NLF GF IP+P+IPKWW W Y++CP +W + G++ SQYGD
Sbjct: 1350 SLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGD 1409
Query: 1116 IDKEISAFGKAK--TVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQR 1173
++ I G A T+ ++ D++G+D DF+G V VL+ F + FA +FA+ I LNFQ
Sbjct: 1410 VEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469
Query: 1174 R 1174
R
Sbjct: 1470 R 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 969 bits (2507), Expect = 0.0
Identities = 361/1234 (29%), Positives = 590/1234 (47%), Gaps = 124/1234 (10%)
Query: 36 TDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 95
D + GL +T VG+ RGVSGG++KR++ E +G + D + GLDS+T
Sbjct: 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
Query: 96 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEG 155
+ + LK +I D T L+++ Q + + ++LFD VI++ EG +Y GP + ++FE
Sbjct: 245 ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEK 304
Query: 156 CGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLG--LMQD- 212
GF+CPDR+ ADFL + S + Q + + +F T ++ LM++
Sbjct: 305 MGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKK-VPRTPQEFETYWRNSPEYAQLMKEI 362
Query: 213 ------------EELARSFNKSERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLY 260
+E R + +++ K Y+++ +K C R FL MK N S
Sbjct: 363 DEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT 422
Query: 261 VFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNMTISRLA 320
+F +I+A + +VF + GALF+A++ E+
Sbjct: 423 LFMVFGNIIMALILSSVFYNLPKNTS--DFYSRGGALFFAILFNAFSSLLEIASMYEARP 480
Query: 321 VFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFF 380
+ KHR Y A AI + I ++P ++ES V+ + Y+++ F GRF L+ F
Sbjct: 481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540
Query: 381 AVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPL 440
L LFR+I ++ +T++ + + +L L ++ GF IP+ SM W +W ++V PL
Sbjct: 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPL 600
Query: 441 TYGEIGLTVNEFLAPRWE---KVISG----NTTAGMQTLESRGL---------------- 477
Y L VNEF R+E V SG N + G
Sbjct: 601 AYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLS 660
Query: 478 -NFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGS 536
+ +S W + G +IGFT+ F V+ L F K + ++ + + + +K S
Sbjct: 661 FQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETS 720
Query: 537 DRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQ 596
+ G +L LT +D+ D+ ++ F+
Sbjct: 721 A----------SNKNDIEAG--------EVLGSTDLTDESDDVNDEKDMEKESGEDIFHW 762
Query: 597 TRL-----------QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645
L +L+++ G +PG LTALMG SGAGKTTL++VL+ R T G+I G
Sbjct: 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822
Query: 646 RIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
R+ + +F R GY +Q D+H P TV ES+ FSA+LR + K E+V EV+
Sbjct: 823 RLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVI 882
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAATV 764
+ +E++ D++VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A ++
Sbjct: 883 KLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFEC 824
+ ++ + + G+ ++CTIHQPS +FE FD L+L++ GG+ +YFG LG++S +I YFE
Sbjct: 942 CKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE- 1000
Query: 825 IPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGS 884
G K ++ NPA WMLEV + D+ +++R S+ YQ K + +L + +
Sbjct: 1001 KHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060
Query: 885 KDLHFPTH---FPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKG 941
+D + P + + W QFK +W+ YWR P Y + T +L G F++ G
Sbjct: 1061 EDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG 1120
Query: 942 KKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQ 1001
+ Q + N + A+F A V F + + P V RER + +S A+ AQ
Sbjct: 1121 ---TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQ 1177
Query: 1002 VLVEVPYLFIQAVIYVIITYPMIGYHWSGYK---------IFWSFYGMFCNLLYFNYMGM 1052
+ VE+PY + I+ I Y +G++W+ K +FW MF LYF+ +G
Sbjct: 1178 ITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF--FLYFSTLGQ 1235
Query: 1053 LIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQ 1112
+++S PN A++LAS ++M FCG P ++P +W + Y P +++++ +LS+
Sbjct: 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTG 1295
Query: 1113 YGDID-----KEISAFG--KAKTVSAFLDDY---------------------FGFDHDFL 1144
D+ KE+ F +T ++ Y + + +DFL
Sbjct: 1296 LADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL 1355
Query: 1145 GVVGIVLI----IFPILFASLFAYFIGELNFQRR 1174
+ F I A +F I + F
Sbjct: 1356 EPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 314 bits (806), Expect = e-100
Identities = 110/239 (46%), Positives = 147/239 (61%), Gaps = 47/239 (19%)
Query: 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630
+T+++L Y V + + QLL++I+G +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 631 VLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690
VL+GRKT G+I G+I I G P + F R +GY EQ D+HSPN+TV E++ FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
EPTSGLD++AA ++R +K + ++G+ ++CTIHQPS IFE FD L+L+K GG+ +YFG
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = 2e-96
Identities = 186/593 (31%), Positives = 288/593 (48%), Gaps = 40/593 (6%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGYPKVQHT 656
R LL +++G +PG L A+MG SGAGKTTLM+ L+ R G+ G + + G P
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
IS Y +Q+D+ P +TV E ++F A LR+ ++ K K E V+EVLQ + L ++
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 717 LVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A +V++ +K + + G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNY 835
+T++CTIHQPS ++FE FD ++LM GR+ Y G + +NY
Sbjct: 217 KTIICTIHQPSSELFELFDKIILM-AEGRVAYLGS-PDQAVPFFSDLG-----HPCPENY 269
Query: 836 NPATWMLEVSSNSMETQLG--VDFAQIYRE---STLYQENKELVKQLS--SPSLGSKDLH 888
NPA + ++V + ++ +I S + ++ S + L +
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 889 FP-THFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQ 947
+ + W QF A + + LS R+P +R++ T ++L G+++ +G Q
Sbjct: 330 MEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---Q 386
Query: 948 QDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVP 1007
+ V NI GALF N VI + T E V RE +G+Y AY A+ + E+P
Sbjct: 387 KGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELP 446
Query: 1008 YLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNY---MGMLIVSLTPNIQVA 1064
I ++ ITY MIG SG F +F F L N G LI + +A
Sbjct: 447 LFIILPALFTSITYWMIGLR-SGATHFLTFL--FLVTLVANVATSFGYLISCAFSSTSMA 503
Query: 1065 SILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVL---KGMLSSQYGDIDKEIS 1121
+ F LF GF I IP ++ W YL SW +G+L +Q+ D+D I
Sbjct: 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYL---SWFRYGNEGLLINQWSDVD-NIE 559
Query: 1122 AFGKAKTVSAFLD-----DYFGFDHD--FLGVVGIVLIIFPILFASLFAYFIG 1167
T + F + +L ++G+V++IF + FA I
Sbjct: 560 CTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-76
Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 45/239 (18%)
Query: 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630
+T++F +L V + ++ QLL +++G +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 631 VLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690
L+GR+TG + G++ I G P + +F +I GY Q+DI P +TV E+++F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
EPTSGLD+ +A VM ++ + +TGRT++C+IHQPS +IFE FD L+L+ GR+IYFG
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 1e-66
Identities = 140/606 (23%), Positives = 264/606 (43%), Gaps = 73/606 (12%)
Query: 566 ILPFEPLTVTFEDLRYY------------VDIPSAMRKNGFN-------QTRLQLLSDIT 606
L V +++L Y + + GF +L +
Sbjct: 22 YYKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMD 81
Query: 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPK---VQHTFARIS 661
G +PG LT ++G G+G +TL+ ++ G +EG I G +H +
Sbjct: 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH-YRGDV 140
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRL-STQIDSKTKAEFVNEV----LQTIELDGIKDS 716
Y + D+H P++TV E++ F+A + + D ++ E+ + + T L +++
Sbjct: 141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNT 200
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN-VVETG 775
VG V G+S +RKR++IA + I D T GLD+ A +RA+K
Sbjct: 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNY 835
T + I+Q S D +E FD ++++ G IYFGP + K +YFE + K D
Sbjct: 261 TTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFEKMG--FKCPDRQ 313
Query: 836 NPATWMLEVSSNSMET----------QLGVDFAQIYRESTLYQENKELVKQLSSP----- 880
A ++ ++S + + +F +R S Y +L+K++
Sbjct: 314 TTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYA---QLMKEIDEYLDRCS 370
Query: 881 SLGSKDLHFPTHFPQNG-------------WEQFKACMWKHNLSYWRNPSYNLIRIVFTC 927
+K+ + +H + Q K C+ ++ L NPS+ L +
Sbjct: 371 ESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNI 430
Query: 928 AMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRER 987
M+L+ +F+ KN D ++ GALF A+ F + L I + R ++ + R
Sbjct: 431 IMALILSSVFY---NLPKNTSDFYSRGGALF-FAILFNAFSSLLEIASMYEARPIVEKHR 486
Query: 988 FAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYF 1047
+Y P A + A ++ E+P+ I++V++ II Y M+ + + + F+ +F L
Sbjct: 487 KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAM 546
Query: 1048 NYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKG 1107
+++ I ++T + A A+ L+++ GF IP+P + W W YY+ P ++ +
Sbjct: 547 SHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFES 606
Query: 1108 MLSSQY 1113
++ +++
Sbjct: 607 LMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 3e-54
Identities = 156/593 (26%), Positives = 284/593 (47%), Gaps = 66/593 (11%)
Query: 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRL-----------------QLLSDITGTFRPGI 613
P+T+ F D+ Y V M+ G N R+ +L+ +TG PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPN 673
+ A++G SG+GK+TL++ L+GR G G I + R G+ Q+DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733
+TV E++VF + LRL + + K V+ + L +++++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793
++IA E++ NPS++ +DEPTSGLDA AA ++ + ++ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 794 DDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNY--NPATWMLEVSSN---- 847
D VL+ + GR ++FG + YFE + ++ NPA ++L++++
Sbjct: 275 DS-VLVLSEGRCLFFGKGSD----AMAYFESV----GFSPSFPMNPADFLLDLANGVCQT 325
Query: 848 -----------------SMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKD-LHF 889
S T L S Q N V S+ S D +
Sbjct: 326 DGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISI 385
Query: 890 PTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQD 949
T F QF + + + +L ++ S+N +R+ A +LL G+++W + +D
Sbjct: 386 STWF-----NQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH-----SDFRD 434
Query: 950 VFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYL 1009
V + LG LF ++F+G+ + + ER + +ER +GMY+ +Y A+++ ++P
Sbjct: 435 VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494
Query: 1010 FIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILAS 1069
I I++ +TY M G + + +L +G+ + + + + AS + +
Sbjct: 495 LILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVT 554
Query: 1070 SFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISA 1122
L GF + K +P W Y+ T + + +++ QYG+ K IS+
Sbjct: 555 VTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGE-GKRISS 604
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 1e-52
Identities = 128/487 (26%), Positives = 218/487 (44%), Gaps = 36/487 (7%)
Query: 37 DYILKILGLDICADTMVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 95
D +L+ LGL CA+T +G P R +G+SGG++KRL ++ LF DE ++GLDS
Sbjct: 142 DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201
Query: 96 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEG 155
+ +V LK L T + ++ QP+ E F+LFD +ILMAEG++ Y G + FF
Sbjct: 202 AYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260
Query: 156 CGFRCPDRKGVADFLQEVIS----------RKDQAQYWHCQDHPYSYVSVDQFITKFKAC 205
G CP+ ADF +V++ + + + +
Sbjct: 261 LGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGR-DMLVNTNLWSGK 319
Query: 206 HLGLMQDEELARSFNKSERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKST 265
GL++D E N NA + ++ R +L + R+ L +
Sbjct: 320 AGGLVKDSE-----NMEGIGYNASWWTQFYALLK--------RSWLSVLRDPLLLKVRLI 366
Query: 266 QLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDG-FPEMNMTISRLAVFYK 324
Q ++ A + ++L L + GALF L + FP +N+ + L VF +
Sbjct: 367 QTMMTAILIGLIYLGQGLTQKGVQNI--NGALFLFLTNMTFQNVFPVINVFTAELPVFLR 424
Query: 325 HRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHL 384
Y AY + +I ++PL ++ ++TS+TY++IG F+ L V
Sbjct: 425 ETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVAN 484
Query: 385 TSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGE 444
+ S I+ F + +++ +G ++ LLFGGF I S+P + +W ++ YG
Sbjct: 485 VATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGN 544
Query: 445 IGLTVNEFLAPRWEKVISGNTTA-----GMQTLESRGLNFDSSFYWISIGALIGFTMLFN 499
GL +N++ + S NTT G LE+ L+F ++ ++ + L+ F
Sbjct: 545 EGLLINQWSDVDNIECTSANTTGPCPSSGEVILET--LSFRNADLYLDLIGLVILIFFFR 602
Query: 500 AVFTLAL 506
+ AL
Sbjct: 603 LLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 1e-52
Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 6/212 (2%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYPKVQHTF 657
++L+D++ G + A++G SG+GKTTL+D +SGR + GG G I G P+ F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
+ Y Q+DI P +TV E++ ++A LRL + + + V +VL L + +
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVL----LRDLALTR 135
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ + + R
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V+ TIHQP D+F FD ++L+ + G I+Y G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLL-SSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-51
Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 899 EQFKACMWKHNLSYWRNPSYNLI-RIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGAL 957
Q KA + + L WR+PS L+ R++ M+L+FG +F + N G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGN----LDTSLGGLNRPGLL 56
Query: 958 FSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYV 1017
F + +F + + + P+ ER VL RE + +YSP AY A++LVE+P +QA+I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1018 IITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNL 1077
+I Y M+G S + F + L + +G+ I +L P+ + AS + L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1078 FCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQY 1113
GF IP +P W W YYL P ++ ++ + ++++
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-46
Identities = 165/649 (25%), Positives = 300/649 (46%), Gaps = 93/649 (14%)
Query: 587 SAMRKNGFN---QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IE 642
SA+ G N +T+L +L D +G +P +T L+G +GKTTL+ L+G+ + +
Sbjct: 163 SALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVS 222
Query: 643 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR-------LSTQIDSK 695
G+I GY + + S Y QND+H +TV+E++ FSA + L +++ +
Sbjct: 223 GEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARR 282
Query: 696 TK-------AE-----------------FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731
K AE + L+ + LD KD++VG + G+S Q+
Sbjct: 283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342
Query: 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIF 790
KR+T +V +FMDE ++GLD+ +++ ++ +V T TV+ ++ QP+ + F
Sbjct: 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETF 402
Query: 791 EAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSME 850
+ FDD++L+ G+I+Y GP ++E+FE K + A ++ EV+S +
Sbjct: 403 DLFDDIILLSE-GQIVYQGPRDH----ILEFFESCG--FKCPERKGTADFLQEVTSKKDQ 455
Query: 851 TQLGVDFAQIYRESTL---------YQENKELVKQLSSPSLGSKD----LHFPTHFPQNG 897
Q D + YR ++ + +L +LS P S+ L F + +
Sbjct: 456 EQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPK 514
Query: 898 WEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGAL 957
E KAC K L RN + + V ++ + +F + +N++D GAL
Sbjct: 515 MELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED-----GAL 569
Query: 958 FSAAVFFGIV----NCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQA 1013
+ A+ F ++ N + L+ V Y++R + PW ++ L+ +P I++
Sbjct: 570 YIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIES 629
Query: 1014 VIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGM------LIVSLTPNIQVASIL 1067
V++V+ITY IG+ + F LL F M LI S+ + +A+
Sbjct: 630 VVWVVITYYSIGFAPEASRFFKQL------LLVFLIQQMAAGIFRLIASVCRTMIIANTG 683
Query: 1068 ASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSW-----VLKGMLSSQYGDIDKEISA 1122
+ ++ L GF +PK +IP WW WAY++ P S+ + M + ++ + ++++
Sbjct: 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN---KMAS 740
Query: 1123 FGKAKTVSAFLDDYFGFDHD----FLGVVGIV--LIIFPILFASLFAYF 1165
+ +A L+ F D ++GV ++ I+F +LF Y
Sbjct: 741 DNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
|
Length = 1470 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 6e-45
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 15/215 (6%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KVQHTF 657
L ++ PG + L+G +GAGKTTL+ +L+G G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKV 76
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R GY Q P +TV E++ F A L + + E + E+L+ L+ +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLEDKANKK 133
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN-VVETGR 776
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + ++ E G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811
T++ + H + E D ++++ + G+II G
Sbjct: 189 TILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 7e-38
Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 36/215 (16%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGYP--KVQH 655
+ +L D +G +PG + ++G G+G +TL+ L+ R G + +EGDI G P +
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
+ Y + D+H P +TV E++ F+ + NE
Sbjct: 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEF----------- 115
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ET 774
V G+S +RKR++IA LV+ S++ D T GLD+ A +++ ++ +
Sbjct: 116 -------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T +++Q S +I++ FD ++++ GR IY+G
Sbjct: 169 KTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 4e-36
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 240 ELLKTCATREFLLMKRNSSL-YVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALF 298
LK REFL R+ SL +++ Q +++A V TVF + + G LF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD---TSLGGLNRPGLLF 57
Query: 299 YALVILIVDGFPEM-NMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTS 357
++++ + + I V + Y AY + ++++P+SLL++ ++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 358 LTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLF 417
+ Y+++G V RF L+ L + L IA++ + + IG + +L LLL
Sbjct: 118 IVYFMVGL--PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 418 GGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEF 452
GF IP SMP WL+W +++ PLTY L NEF
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 3e-35
Identities = 33/91 (36%), Positives = 56/91 (61%)
Query: 54 GDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113
G+ RG+SGG++KR++ E +V L D + GLDSST +I+ ++ + + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 114 ALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+SL Q + E +DLFD V+++ EG+ +Y+G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 21/213 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 658
+ D++ G + L+G +GAGKTT + +L+G R T G I GY A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 659 -RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
+ GYC Q D +TV E + F A L+ + E V +L+ + L +
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V + GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRS 184
Query: 778 VVCTIHQPSIDIFEAF-DDLVLMKNGGRIIYFG 809
++ T H S+D EA D + +M + G++ G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSD-GKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 6e-30
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 576 FEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635
++L + + L DI+ T + G ++G +G+GK+TL+ +L+G
Sbjct: 2 LKNLSF-----------SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
Query: 636 KTGGIIEGDIRIGGYP---KVQHTFARISGYCEQNDIHSP-----NITVEESIVFSAWLR 687
G G++ + G R G QN P TVEE + F
Sbjct: 51 L--GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENL 104
Query: 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747
+ + + + V E L+ + L+G++D LS Q++R+ IA L +P I+
Sbjct: 105 GLPEEEIEER---VEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDIL 156
Query: 748 FMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+DEPT+GLD ++ +K + G+T++ H + E D ++++++G
Sbjct: 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-27
Identities = 98/422 (23%), Positives = 190/422 (45%), Gaps = 40/422 (9%)
Query: 31 ENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISN 89
E L + ++ LGL C +T++G+ RG+SGG++KR++ E+++ P+ L +DE ++
Sbjct: 177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTS 235
Query: 90 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149
GLD++ +++V L L T + S+ QP+ + +FD V++++EG+ ++ G S +
Sbjct: 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 150 CKFFEGCGFRCPDRKGVADFLQEV---------ISRKDQAQYWHCQDHPYSYVSVDQFIT 200
+FE GF ADFL ++ +S +++ Y+ + +
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKA 354
Query: 201 KFKACHLGLMQDEELARSFNKSERHKNAIS------FKKYSLTKWELLKTCATREFLLMK 254
+ H Q ++ H+++ F ++S+ LK +
Sbjct: 355 AIEMSHF--PQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE---------R 403
Query: 255 RNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNM 314
++ S + Q++ A + ++ S D LG LF+ + V FP N
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWHS----DFRDVQDRLGLLFFISIFWGV--FPSFNS 457
Query: 315 TIS---RLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGR 371
A+F K R Y +Y + + +P+ L+ ++ ++TY++ G PE+G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 372 FIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWL 431
F+ L+ L S L A+ + + I T+ +L +L GGF + K +PS +
Sbjct: 518 FLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK--LPSCM 575
Query: 432 EW 433
W
Sbjct: 576 AW 577
|
Length = 659 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ 654
+ + L ++ T PG+ L+G +GAGKTTLM +L+ + G IRI G ++
Sbjct: 12 KKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILAT-----LTPPSSGTIRIDGQDVLK 65
Query: 655 H--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
R GY Q PN TV E + + AWL+ I SK V+EVL+ + L
Sbjct: 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGD 122
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+G LS R+R+ IA LV +PSI+ +DEPT+GLD + +
Sbjct: 123 RAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
E R V+ + H D+ + + ++ G++++ G
Sbjct: 178 ED-RIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L D++ +PG A++G +GAGK+TL+ + G + T G IR+ G P + R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEK-ERKR 69
Query: 660 ISGYCEQNDIHSPN--ITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDS 716
I GY Q + I+V + ++ + + SK V+E L+ + L + D
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + ++ + G
Sbjct: 129 QIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T++ H + + E FD ++L+ ++ G
Sbjct: 184 TILVVTHDLGL-VLEYFDRVLLLN--RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 5e-25
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 457 WEKVISG-NTTAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKS 515
W K SG N T G L+SRGL ++ +YWI +GAL+GFT+LFN +FTLALT+L P GKS
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 516 RTLIS 520
+ ++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---- 656
+L D++ + G +T ++G +G+GK+TL+ L+G G++ + G +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKD-IASLSPKE 73
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKD 715
A+ Y Q+ +TV E ++ + L SK E V E L+ + L+ + D
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ET 774
V+ LS +R+R+ IA L I+ +DEPTS LD V+ ++++ E
Sbjct: 134 R-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 775 GRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
G TVV +H D+ A D L+L+K+ G+I+ G
Sbjct: 189 GLTVVMVLH----DLNLAARYADHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 24/222 (10%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ 654
R L D++ G L+G +G+GK+TL+ +L+G +++ G++ + G
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLDTSS 70
Query: 655 ----HTFARISGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
+ G QN D TVE+ + F + + + E V E L+ +
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL---ENLGLPREEIEERVAEALELVG 127
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
L+ + D LS Q++R+ IA L P I+ +DEPT+GLD + ++ +K
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 770 NVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ E G+T++ H +++ + D V++ + G+I+ G
Sbjct: 183 KLKEEGGKTIIIVTH--DLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-24
Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 34/247 (13%)
Query: 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630
+ E+L + + L DI+ + G +TAL+G +GAGK+TL+
Sbjct: 2 MPMIEVENLTVS-----------YGNRPV--LEDISLSVEKGEITALIGPNGAGKSTLLK 48
Query: 631 VLSGRKTGGII---EGDIRIGGYP-KVQHTFARISGYCEQNDIHSPN--ITVEESIVFSA 684
+ G ++ G+I+I G P + + RI GY Q + ITV++ ++
Sbjct: 49 AILG-----LLKPSSGEIKIFGKPVRKRRKRLRI-GYVPQKSSVDRSFPITVKDVVLLGR 102
Query: 685 WLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743
+ + + +K E V+E L+ + ++ ++D +G LS Q++R+ +A L N
Sbjct: 103 YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQN 157
Query: 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803
P ++ +DEP +G+D + +K + + G+TV+ H + + FD ++ +
Sbjct: 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN--R 214
Query: 804 RIIYFGP 810
+I GP
Sbjct: 215 HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 22/216 (10%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA- 658
+ L D++ T PG AL+G SG GKTTL+ +++G + G+I I G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRD-VTGVPPE 70
Query: 659 -RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R G Q+ P++TV E+I F L+L KAE V + +EL G++ L
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFG--LKLRG----VPKAEIRARVRELLELVGLEGLL 124
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGR 776
P + LS Q++R+ +A L PS++ +DEP S LDA+ + +K + E G
Sbjct: 125 NRYP--HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 777 TVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
T + H D EA D + +M N GRI+ G
Sbjct: 183 TTIYVTH----DQEEALALADRIAVM-NEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 42 ILGLDICADTMVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQIV 100
+ L A T +G + +G+SGG+++R++ +L+ P + L +DE ++GLDS T +V
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP-KVLILDEPTSGLDSFTALNLV 183
Query: 101 SFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
S L L + ++++ QP + F LFD ++L++ G+IVY G
Sbjct: 184 STLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 6e-23
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 658
+L D++ G + AL G +GAGKTTL +L+G +++ G I + G P
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ GY Q+ + + V L L + E VL+ ++L +K+
Sbjct: 71 KSIGYVMQD----VDYQLFTDSVREE-LLLGLKELDA-GNEQAETVLKDLDLYALKERH- 123
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
P LS Q++RL IA L++ ++ DEPTSGLD + V ++ + G+ V
Sbjct: 124 --P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNG 802
+ H + + D ++L+ NG
Sbjct: 180 IVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 59/218 (27%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653
+ Q +L+D++ G + AL+G SG+GK+TL+ ++G + G I I G
Sbjct: 10 YGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65
Query: 654 QHTFA-----RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
R G Q+ P++TV E+I
Sbjct: 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------- 99
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
GLS Q++R+ +A L +P ++ +DEPTS LD V +
Sbjct: 100 ----------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 769 KNVVET-GRTVVCTIHQPSIDIFEAF---DDLVLMKNG 802
K++ G TVV H D+ EA D +V++++G
Sbjct: 144 KSLQAQLGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.6 bits (234), Expect = 7e-22
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 53/205 (25%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 658
L DI+ T G + L+G +GAGKTTL+ ++ G + G+I++ G +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 659 -RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R GY + N+TV E++ S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
G ++RL +A L+ +P ++ +DEPTSGLD + ++ + + G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNG 802
++ + H + D + ++ NG
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 37/87 (42%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 59 RGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS 117
RG+SGG++KR++ EL+ P LF+DE ++GLDSS+ Q++S L+ L T T + S
Sbjct: 110 RGLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 118 LLQPAPETFDLFDDVILMAEGKIVYHG 144
+ QP+ E F+LFD ++L+++G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 2e-21
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 38/225 (16%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 652
++Q L ++ + G A++G SG+GK+TL+++L G R T G++R+ G
Sbjct: 13 GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT----SGEVRVDG--- 65
Query: 653 VQHTFARIS------------GYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKA 698
+++S G+ Q+ + P++T E++ L + K
Sbjct: 66 --TDISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENV------ELPLLLAGVPKK 115
Query: 699 EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758
E + +E G+ D L P + LS Q++R+ IA L +P II DEPT LD+
Sbjct: 116 ERRERAEELLERVGLGDRLNHYP--SELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 759 RAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
VM ++ + E G T+V H P ++ E D ++ +++G
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 27/224 (12%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY 650
G +++ L D+ G A++G SG+GK+TL+++L G + T G + I G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV----LINGK 67
Query: 651 P------KVQHTFARIS-GYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFV 701
K R G+ QN + P++TV E++ L I K+
Sbjct: 68 DLTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENV------ELPLLIAGKSAGRRK 119
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
+ +E+ G++D L+ + LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 120 RAAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 762 ATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804
V+ ++ + E G+T++ H P ++ + D ++ +K+G
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 6e-21
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 46/212 (21%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQHTFA 658
+L D++ + G + ++G +GAGK+TL+ L+G K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDG--------- 60
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
D+ + K A + V Q +EL G+ L
Sbjct: 61 --------KDLA--------------------SLSPKELARKIAYVPQALELLGLAH-LA 91
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRT 777
P N LS +R+R+ +A L P I+ +DEPTS LD ++ ++ + E G+T
Sbjct: 92 DRP-FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
VV +H ++ D ++L+K+ GRI+ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLKD-GRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 21/223 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE---GDIRIGGYPKVQ 654
Q L +I PG A++G SGAGK+TL+ ++ + G I DI K++
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVF------SAWLRLSTQIDSKTKAEFVNEVLQTI 708
RI G Q+ +TV E+++ W L + + K L +
Sbjct: 76 KLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER----ALSAL 130
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
E G+ D + LS Q++R+ IA L P +I DEP + LD + + VM +
Sbjct: 131 ERVGLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 769 KNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
K + E G TV+ +HQ +D+ + + D ++ G I++ G
Sbjct: 189 KRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 4e-20
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 38/229 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQ---- 654
L D++ + RPG + L+G +GAGKTTL +++SG R T G ++ I G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 655 ---HTFARISGYCEQNDIHSPNITVEESIV----------FSAWLRLSTQIDSKTKAEFV 701
TF + P +TV E+++ + +++ +AE
Sbjct: 76 GIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAE-- 125
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
E+L+ + L + D G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 126 -ELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ ++ + E G TV+ H +D+ + D V + + GR+I G
Sbjct: 180 EELAELIRELRERGITVLLVEH--DMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 5e-20
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 29/225 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQH 655
L D++ + PG AL+G SGAGK+TL+ L+G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 656 TFARISGYCEQNDIHSPNITVEESIV---------FSAWLRLSTQIDSKTKAEFVNEVLQ 706
R G Q ++V E+++ + + L + + K +A L
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-KQRA------LA 127
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+E G+ D + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 128 ALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 767 AVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+K + E G TV+ ++HQ + E D +V +K+ GRI++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 6e-20
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE---GDIRIGGYPKVQH 655
++ + T PG LT L+G +G+GK+TL+ +L+G R G ++ D+ G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH--GLSRRAR 73
Query: 656 TFARISGYCEQNDIHSPNITVEESIVF------SAWLRLSTQIDSKTKAEFVNEVLQTIE 709
AR EQ+ + +TV + + S W DS A V+ L E
Sbjct: 74 --ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-----AGDSPHDAAVVDRALARTE 126
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
L + D ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + V+
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ TG TVV +H +++ ++ D V++ +GGR++ GP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 7e-20
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE--GDIRIGGYPKVQH 655
++L DI+ + G + +G +GAGKTT M ++ G + G I G ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR 73
Query: 656 TFARISG---YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
A I Y PN+T E++ A I K ++EVL + L
Sbjct: 74 IGALIEAPGFY--------PNLTARENLRLLA---RLLGIRKKR----IDEVLDVVGLKD 118
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + ++
Sbjct: 119 SAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807
+ G TV+ + H S +I + D + ++ N G++I
Sbjct: 174 DQGITVLISSHLLS-EIQKVADRIGII-NKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 7e-20
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 60/355 (16%)
Query: 469 MQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQ 528
+ L S L F F ++SI AL+ + F + LT G +++ E + L+
Sbjct: 222 IAFLSSAVLEF---FAYLSI-ALVAVYIGFRLLGEGDLTL--FAGLFVLILAPEFFQPLR 275
Query: 529 DQ-------KDCVG-SDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLR 580
D +D+ + ++P+ P GE+ + P+ ++ E+L
Sbjct: 276 DLGSFFHAAAAGEAAADKLFTLLESPVAT---PGSGEKAEVANE-----PPIEISLENLS 327
Query: 581 Y-YVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 639
+ Y D LSD+ T + G LTAL+G SGAGK+TL+++L G
Sbjct: 328 FRYPDGK-------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP- 373
Query: 640 IIEGDIRIGGYPKV---QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKT 696
+G+IR+ G + + + QN + T+ E+I+ + +
Sbjct: 374 -TQGEIRVNGIDLRDLSPEAWRKQISWVSQNP-YLFAGTIRENILLAR--------PDAS 423
Query: 697 KAEFVNEVLQTIELDGIKDSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDE 751
E + L L GL V GLS Q +RL +A L++ S++ +DE
Sbjct: 424 DEE-IIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482
Query: 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
PT+ LDA +++A++ + + +TV+ H+ D +A D +++ + GR++
Sbjct: 483 PTAHLDAETEQIILQALQELAK-QKTVLVITHRLE-DAADA--DRIVVLDNGRLV 533
|
Length = 559 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQH 655
+L + R G + A++G SG+GK+TL+ ++ G R G +I+G+ G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
R G Q+ ++TV E++ F LR T++ + E V E L+ + L G +D
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGLRGAED 131
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET- 774
P LS +KR+ +A L +P ++ DEPT+GLD A+ + ++++ +
Sbjct: 132 LY---PA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186
Query: 775 GRTVVCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFGPLGQ 813
G T + H D+ AF D + + G+I+ G +
Sbjct: 187 GLTSIMVTH----DLDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L DI + +PG A++G +GAGKTTL+++L +G I I G + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLR 76
Query: 662 ---GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSL 717
G Q D + T+ E+I RL E V E + I
Sbjct: 77 SMIGVVLQ-DTFLFSGTIMENI------RLGRPN---ATDEEVIEAAKEAGAHDFIMKLP 126
Query: 718 VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
G LS +R+ L IA ++ +P I+ +DE TS +D + A++ ++
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
+ GRT + H+ S I A D +L+ + G+II
Sbjct: 187 K-GRTSIIIAHRLST-IKNA--DKILVLDDGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 22/220 (10%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPK 652
+++Q + D++ G +T L+G +GAGKTTL+ ++ ++ G + I G
Sbjct: 12 GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMI-----ATLLIPDSGKVTIDGVDT 66
Query: 653 V-QHTFAR--ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
V +F R I + +++ +T E++ + A RL+ + KA + E+ + ++
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYA-RLTARENLKYFA--RLNGLSRKEIKAR-IAELSKRLQ 122
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
L D VG ST ++++ IA LV +PSI+ +DEPTSGLD R +K
Sbjct: 123 LLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ GR V+ + H + EA D V++ + G ++ G
Sbjct: 178 QLKNEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-19
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKV 653
++L + G + AL+G +GAGK+TL+ L+G R G + D Y +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 654 QHTFARIS-GYCEQN---DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
R G Q+ + + V++ + F L L V E L +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVE--RRVREALTAVG 116
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
G+++ LS ++KR+ IA + P ++ +DEPT+GLD ++ ++
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 770 NVVETGRTVVCTIH 783
+ G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 18/216 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFA 658
L D++ T RPG AL+G +GAGK+TL +L+ EG I + G+ + A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
R+ +Q + +++V +++ + A L + + E+L + L D V
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDKV 130
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRT 777
L+ R+R+ IA L+ P+++ +DEPT GLD + A + V+ + G +
Sbjct: 131 R-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLS 185
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
V+ H +D EA D LV++ + GR++ G +
Sbjct: 186 VLWATHL--VDEIEADDRLVVL-HRGRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-19
Identities = 77/336 (22%), Positives = 135/336 (40%), Gaps = 71/336 (21%)
Query: 486 ISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDA 545
+++G L+ F ML + S+ + + + + +G D P
Sbjct: 407 LTLGQLVAFNMLAGYFISPITRL------SQLWT---DFQQAKVALERLGDILDTPP--- 454
Query: 546 PLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDI 605
E+ + LP + FE++ + + +L D+
Sbjct: 455 -----------EQEGDKTLIHLPKLQGEIEFENVSFR-----------YGPDDPPVLEDL 492
Query: 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISG 662
+ PG A++G SG+GK+TL+ +L G +G I + G + R G
Sbjct: 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVG 550
Query: 663 YCEQND------------IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
Y Q+ + +P T EE + A +L+ EF+ L
Sbjct: 551 YVLQDPFLFSGSIRENIALGNPEATDEE--IIEA-AQLA-GAH-----EFIEN------L 595
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
D+ VG G N LS QR+RL +A L++ P I+ +DE TS LD A +++ +
Sbjct: 596 PMGYDTPVGEGGAN-LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654
Query: 771 VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
++ GRTV+ H+ S I A D +++ + G+I+
Sbjct: 655 IL-QGRTVIIIAHRLST-IRSA--DRIIVLDQGKIV 686
|
Length = 709 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 39/230 (16%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 652
L DI+ G +TAL+G SG GK+TL+ D++ G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEVLLDGKDI 69
Query: 653 VQHTFARIS-----GYCEQNDIHSPNI---TVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
+ G Q PN ++ +++ + L + E V E
Sbjct: 70 YDLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGI--KLKEELDERVEEA 123
Query: 705 LQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
L+ L +KD L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 124 LRKAALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
+ + + + T+V H ++ +A D + N GR++ FGP
Sbjct: 180 IEELIAELKKE-YTIVIVTH----NMQQAARVADRTAFLLN-GRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQHTFA 658
+ DI+ + G L+G SG GKTTL+ +++G + + G I I P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
R G Q+ P++TVEE++ F L++ ++ V E L+ + L+G D
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRT 777
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + +K + E G T
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 778 VVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
V H D EA D + +M N GRI G
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVM-NDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 18/219 (8%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 652
+ +Q + ++ T +PG +T L+G +GAGKTT + +L+G G + G+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDV 69
Query: 653 VQHTFA--RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
V+ R G+ + +T E++ + A L + D T + E+ + +
Sbjct: 70 VKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTAR--LEELADRLGM 126
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
+ + D VG G ST R+++ IA LV +P ++ +DEPT+GLD A + ++
Sbjct: 127 EELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 771 VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ G+ ++ + H + E D V++ + GR++Y G
Sbjct: 182 LRALGKCILFSTH--IMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 2e-18
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 54/206 (26%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK---VQHT 656
+L D++ T +PG A++G SG+GK+TL+ +L G+I I G +
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLES 73
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
+ Y Q + +FS + I++
Sbjct: 74 LRKNIAYVPQ-----------DPFLFS---------GT------------------IRE- 94
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
N LS QR+R+ IA L+ +P I+ +DE TS LD A ++ A++ + + G+
Sbjct: 95 -------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNG 802
TV+ H+ S D ++++ +G
Sbjct: 147 TVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-18
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 707 TIELDGIKDSLVGLPG-------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
I +DG + + L V LS QR+R+ +A L+ NP ++ +DEPTSGLD
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
Query: 760 AAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ ++ ++ + E GRTV+ H P A D ++++K+G
Sbjct: 115 SRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 3e-18
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFA 658
L I + G L+G SGAGK+TL+ ++ + G I + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 659 RIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R G Q+ P+ V E++ F+ L + T + + + V L+ + L +L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEV-TGVPPREIRKRVPAALELVGLSHKHRAL 133
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
LS +++R+ IA +V +P+I+ DEPT LD +M +K + + G T
Sbjct: 134 P-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 778 VVCTIHQPSI 787
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-- 654
L DI+ + G L AL+G SGAGK+TL+ +++G +T G IR+ G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVS 70
Query: 655 --HTFARISGYCEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIE 709
R G+ Q+ P++TV ++I F R S + + + E E+L+ ++
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSE-AEIRARVE---ELLRLVQ 126
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV- 768
L+G+ D P LS QR+R+ +A L P ++ +DEP LDA +R
Sbjct: 127 LEGLADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA-KVRKELRRWL 180
Query: 769 -KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
K G T V H + E D +V++ GRI GP
Sbjct: 181 RKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L +++ T R G A++G G+GK+TL+ +L+G G + + G Q A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 662 ---GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
GY Q D+ T+ ++I A D +L+ EL G+ D +
Sbjct: 78 RNIGYVPQ-DVTLFYGTLRDNITLGA-----PLADD-------ERILRAAELAGVTDFVN 124
Query: 719 GLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + ++
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
++ +T++ H+PS+ + D +++M + GRI+
Sbjct: 185 QLLG-DKTLIIITHRPSLL--DLVDRIIVM-DSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 9e-18
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 55/206 (26%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 658
+L +++ + PG A++G SG+GK+TL ++ G R T G +R+ G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGAD------- 65
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DG-IKDS 716
+Q D + V + Q EL G I +
Sbjct: 66 ------------------------------ISQWDPNELGDHVGYLPQDDELFSGSIAE- 94
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
N LS QR+RL +A L NP I+ +DEP S LD + +A+ + G
Sbjct: 95 -------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNG 802
T + H+P + D ++++++G
Sbjct: 148 TRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 44/225 (19%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQH 655
L D+ G L+G SG GK+TL+ +++G + G+I I G P+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPE--- 73
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
R QN P++TV E+I F L+L ++ V EV + + L+ + +
Sbjct: 74 --KRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLN 128
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
LS QR+R+ +A LV P + +DEP S LDA+ +R +
Sbjct: 129 RKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-----LRVLM------ 172
Query: 776 RTVVCTIHQ--------PSIDIFEA---FDDLVLMKNGGRIIYFG 809
R+ + +H+ + D EA D +V+M N GRI G
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVM-NDGRIQQVG 216
|
Length = 338 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 25/221 (11%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY 650
G + L DI+ + G AL+G SG GK+TL+ +++G R T G++ + G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGE 66
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
P R GY Q D P +TV +++ L L ++ + E+L+ + L
Sbjct: 67 PVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARER-AEELLELVGL 121
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
G +++ P LS R+R+ +A L +P ++ +DEP S LDA + + +
Sbjct: 122 SGFENAY---PH--QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 771 VV-ETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG-GRII 806
+ ETG+TV+ H DI EA D +V++ GRI+
Sbjct: 177 IWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 1e-17
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--FA 658
+L D++ G L AL+G SG GKTTL+ ++G + G I I + H
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD-RDLTHAPPHK 78
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
R QN P++ VE+++ F LR KA+ V ++L G+ D+
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFG--LRAQKM----PKADIAERVADALKLVGLGDAAA 132
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GR 776
LP LS ++R+ IA + P ++ +DEP S LDA A + + + E
Sbjct: 133 HLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T++C H D D +MK+ GR+ G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L D++ R G L G SGAGKTTL+ +L G T G +RI G + ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 662 ------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
G Q+ P+ TV E++ L ++ K + E V + G++
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVA------LPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
P LS +++R+ IA +V +P ++ DEPT LD + ++ +K + + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 776 RTVVCTIHQPSI 787
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 555 RGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGIL 614
RPLA + + ++ F + ++ G R L ++ T PG
Sbjct: 303 AAPRPLAGKAPVTAAPAPSLEFSGV--------SVAYPG----RRPALRPVSFTVPPGER 350
Query: 615 TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQHTFARISGYCEQNDIH 670
AL+G SGAGK+TL+++L G EG I + G P +I + Q+
Sbjct: 351 VALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQI-AWVPQHP-F 406
Query: 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730
T+ E+I + +I + ++E + + G+ D+ +G G GLS Q
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALP-QGL-DTPIG-EGGAGLSGGQ 463
Query: 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSI 787
+RL +A + + ++ +DEPT+ LDA A V+ A++ + + GRTV+ H+ ++
Sbjct: 464 AQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 52/232 (22%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGG-----YPK 652
++++ G L+G SG+GKTT M + +IE G+I I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESIV----FSAWLRLSTQIDSKTKAEFVNEVLQTI 708
V+ R GY Q P++TVEE+I W + + E +E+L
Sbjct: 71 VE--LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK-------EKIRERADELL--- 118
Query: 709 ELDGIKDSLVGLPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
+LVGL LS Q++R+ +A L A+P ++ MDEP LD
Sbjct: 119 -------ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 762 ATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
+ K + + G+T+V H DI EAF D + +MKN G I+ G
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKN-GEIVQVG 218
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-17
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HT 656
Q L D+ G L AL+G SG+GK+TL+ +++G + G IR+ G + H
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
R G+ Q+ ++TV ++I F +R + V E+L+ ++L+G+ D
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR 126
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETG 775
P N LS QR+R+ +A L P ++ +DEP LDA+ + ++ + E
Sbjct: 127 ---YP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T V H + E D +V+M N G+I G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 6e-17
Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 29/217 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L ++ T RPG + AL+G +GAGK+TLM +LSG G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 660 ISGYCEQND-----IH-----SPNITVEESIVFSAWL-RLSTQIDSKTKAEFVNEVLQTI 708
S + +H PN++V E+I R ID K E+L +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
LD D+LVG LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 769 KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
+ + G ++ H+ ++FE D + ++++G +
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY-P---KVQ 654
L I+ T G + +G +GAGKTT + +LSG ++ G++R+ G P + +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKK 91
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
RI Q ++ V +S L I A F + + EL ++
Sbjct: 92 F-LRRIGVVFGQKTQLWWDLPVIDS------FYLLAAIYDLPPARFKKRLDELSELLDLE 144
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-E 773
+ L+ P V LS QR R IA L+ P I+F+DEPT GLD A + +K E
Sbjct: 145 E-LLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
G TV+ T H DI EA VL+ + GR++Y G
Sbjct: 203 RGTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 6e-17
Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 43/267 (16%)
Query: 557 ERPLAHRKMILPFEP---LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGI 613
E P A +M LP P L+V E L P +K +L I+ + G
Sbjct: 318 ELPAAAERMPLP-APQGALSV--ERLTA---APPGQKK--------PILKGISFALQAGE 363
Query: 614 LTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQND 668
++G SG+GK+TL +L G T G +R+ G Q R GY Q D
Sbjct: 364 ALGIIGPSGSGKSTLARLLVGIWPPTSG----SVRLDGADLRQWDREQLGRHIGYLPQ-D 418
Query: 669 IHSPNITVEESIVFSAWLRLSTQIDSK-----TKAEFVNEVLQTIELDGIKDSLVGLPGV 723
+ + T+ E+I R + D + + V+E++ + G D+ +G G
Sbjct: 419 VELFDGTIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLP-QGY-DTRIG-EGG 470
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS QR+R+ +A L +P ++ +DEP S LD+ A + A+ G TVV H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 784 QPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+PS A D +L+ GRI FGP
Sbjct: 531 RPSA---LASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-17
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L DI + G A++G SG GK+TL+ +++G + T G++ + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRPVTGPGPDI 74
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
GY Q D P +TV +++ L ++ K+KAE + +EL G+
Sbjct: 75 --GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLELVGLAGFEDK 126
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTV 778
P LS R+R+ IA L P ++ +DEP LDA + + + ET +TV
Sbjct: 127 YPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 779 VCTIHQPSIDIFEAF---DDLVLMKNGGRII 806
+ H D+ EA D +V++ N I
Sbjct: 185 LLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 29/225 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQH 655
L ++D++ RPG + L+G +GAGKTTL ++++G + + G +I I G P H
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP--PH 74
Query: 656 TFARIS-GYCEQNDIHSPNITVEESI------------VFSAWLRLSTQIDSKTKAEFVN 702
AR+ Q P +TV E++ + + +++ +A
Sbjct: 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--- 131
Query: 703 EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
E+L+ + L + D G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 132 ELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 763 TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
+ ++ + + G T++ H + + D +V++ N G +I
Sbjct: 187 ELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL-NYGEVI 229
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 21/223 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR---KTGGIIEGDIRIGGYPKVQ-H 655
Q L D+ G + A++G SGAGK+TL+ L+G +G I+ ++I +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 656 TFARISGYCEQNDIHSPNITVEESIVF------SAWLRLSTQIDSKTKAEFVNEVLQTIE 709
R G Q P ++V E+++ S W L + KA+ L +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ----ALDALE 133
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
GI D + LS Q++R+ IA LV P II DEP + LD +A VM +K
Sbjct: 134 RVGILDKA--YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191
Query: 770 NV-VETGRTVVCTIHQPSIDI-FEAFDDLVLMKNGGRIIYFGP 810
++ E G TV+ +HQ +D+ + D ++ +K GRI++ GP
Sbjct: 192 DINQEDGITVIVNLHQ--VDLAKKYADRIIGLKA-GRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 590 RKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDI 645
+ L D++ G + ++G SGAGK+TL+ +++ R T G ++G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ- 68
Query: 646 RIGGYPKVQ-HTFARISGYCEQNDIHSPNI----TVEESIVFSAWLRLSTQIDSKTKAEF 700
+ + + + G Q+ N+ TV E++ F L L+ K + +
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAFP--LELAGV--PKAEIKQ 120
Query: 701 -VNEVLQTIELDGIKDSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTS 754
V E+L+ LVGL LS Q++R+ IA L NP I+ DE TS
Sbjct: 121 RVAELLE----------LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 755 GLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
LD +++ +K++ G T+V H+ +++ + D V + + GR++ G + +
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTVSE 228
|
Length = 339 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI----- 647
G R Q+L DI PG + L G SG+GKTTL+ ++ G ++ + EG +++
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQEL 69
Query: 648 GGYPKVQHTFARIS-GYCEQ--NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
G + + R + GY Q N + +T +++ + L L + + E +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAA 761
L+ + G+ D L P + LS Q++R+ IA LV P ++ DEPT+ LD+ R
Sbjct: 126 LEAV---GLGDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+M+ K E G T++ H I + D +V M++G
Sbjct: 181 VELMQ--KLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-16
Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 58/292 (19%)
Query: 546 PLKAATGPKRGERPLAHRKMILPFEPLTVTFEDL--RYYVDIPSAMRKNGFNQTR--LQL 601
L AA E+ + + ++ +L RY RK F + R ++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGS------RKGLFVRERGEVKA 306
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-------------GDIR 646
+ D++ R G L+G SG+GK+TL +L+G + G I +R
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 647 IGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
Q ++ ++ P +TV + + LR+ + V E+L+
Sbjct: 367 RRIQMVFQDPYSSLN----------PRMTVGDILAEP--LRIHGGGSGAERRARVAELLE 414
Query: 707 TIELDGIKDSLVGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 760
LVGLP + LS QR+R+ IA L P ++ +DEP S LD
Sbjct: 415 ----------LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464
Query: 761 AATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAF-DDLVLMKNGGRIIYFGP 810
A V+ +K++ E G T + H + + D + +M + GRI+ GP
Sbjct: 465 QAQVLNLLKDLQEELGLTYLFISH--DLAVVRYIADRVAVMYD-GRIVEEGP 513
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--- 656
+LL ++ RPG + A++G +GAGK+TL+ LSG + G++ + G P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
AR QN + TV+E + + + + + + L +L G+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGR-IPHRSGREPEEDERIAAQALAATDLSGLAGR 131
Query: 717 LVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAATVMRAVKN 770
LS +++R+ +A L V + +F+DEPTS LD +R +
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 771 VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ G V+ +H +++ + D +++ + GR+I G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTF---A 658
++ R G + L+G +GAGKTT + +L+ + T G + G+ V+
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
RI G Q+ +T E++ A L + + E ++E+L + L D LV
Sbjct: 74 RI-GIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV 129
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRT 777
S R+RL IA LV P ++F+DEPT GLD + A V ++ + E G T
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ T H ++ E D V + + GRII G
Sbjct: 185 ILLTTHY--MEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQ 666
+ G L+G +GAGKTT + +L G G I + G P + +H R+ G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV-GVVPQ 87
Query: 667 NDIHSPNITVEESI-VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725
D P+ TV E++ VF + LS V +L+ +L+ D+ VG
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----E 138
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS ++RLT+A LV +P ++ +DEPT+GLD +A + +++++ G+T++ T H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 12/215 (5%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 657
L D++ G L AL+G SG+GKTTL+ +++G + G I GG
Sbjct: 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPV 71
Query: 658 A-RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK-TKAEFVNEVLQTIELDGIKD 715
R G+ Q+ ++TV +++ F ++ ++ + V+E+L+ ++LD + D
Sbjct: 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD 131
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VET 774
P LS QR+R+ +A L P ++ +DEP LDA+ + R ++ + E
Sbjct: 132 R---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T V H + E D +V+M N GRI G
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVM-NKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHT 656
+L + G + A++G SG+GK+TL+ R G++ +G+I I G Q +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLL-----RLILGLLRPDKGEILIDGEDIPQLS 76
Query: 657 FARIS------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
+ G Q ++TV E++ F LR T++ E V L+
Sbjct: 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLE---- 130
Query: 711 DGIKDSLVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
LVGL G LS RKR+ +A + +P ++F+DEPTSGLD +A +
Sbjct: 131 ------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184
Query: 765 MRAVKNVVET-GRTVVCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFGPLGQ 813
++ + + G TV+ H D+ D V + G++I G +
Sbjct: 185 DELIRELNDALGLTVIMVTH----DLDSLLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 658
L SD++ T G + G +GAGKTTL+ +L+G R G E + V+ ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG--EVYWQGEPIQNVRESYH 74
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ Y +T E++ F W R ++ T + E L + L G++D
Sbjct: 75 QALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLED--- 125
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
LP V LS Q++R+ +A ++ + +DEP + LD A + + G V
Sbjct: 126 -LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 779 VCTIHQP 785
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 7e-16
Identities = 63/228 (27%), Positives = 95/228 (41%), Gaps = 44/228 (19%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ---H 655
+ D+ T G L+G SG+GKTT + + +IE G+I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
R GY Q P++TV E+I L D + + +E+L
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELL---------- 118
Query: 716 SLVGLPGV-------NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATV-M 765
LVGL + LS Q++R+ +A L A+P I+ MDEP LD R +
Sbjct: 119 DLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
+ ++ E G+T+V H DI EA D + +M G I+ +
Sbjct: 179 KELQK--ELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 8e-16
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 616 ALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSP 672
++G +G+GK+ L++ ++G +G I+ I P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732
++TV ++I + R K E +VL+ E+ GI L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRK------VDKKEIERKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA 792
R+ IA LV NP I+ +DEP S LD R + +K + + V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 793 FDDLVLMKNGGRIIYFG 809
D + +M N G++I G
Sbjct: 197 ADKVAIMLN-GKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 46/218 (21%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQN 667
R G + +G +GAGKTT + +L+ R T G AR++GY
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-----------------ARVAGY---- 55
Query: 668 DIHSPNITVEESI--VF---------SAWLRLSTQ-----IDSKTKAEFVNEVLQTIELD 711
D+ V SI V + L + E E+L+ EL
Sbjct: 56 DVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG 115
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
D VG S R+RL IA L+ P ++F+DEPT+GLD R + ++ +
Sbjct: 116 EAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
E G T++ T H ++ + D + + + GRII G
Sbjct: 171 KEEGVTILLTTHY--MEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-15
Identities = 69/307 (22%), Positives = 111/307 (36%), Gaps = 77/307 (25%)
Query: 497 LFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRG 556
F A L + R + E+ +E+ D +P + P
Sbjct: 283 AFEAFAALPAAAQQLT---RVRAAAERIVEVLDAA--GPVAEGSAPAAGAV-GLGKP--- 333
Query: 557 ERPLAHRKMILPFEPLTVTFEDLRY-YVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILT 615
T+ DL Y P L ++ PG
Sbjct: 334 ----------------TLELRDLSAGYPGAPPV-------------LDGVSLDLPPGERV 364
Query: 616 ALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP---KVQHTFARISGYCEQNDI 669
A++G SG+GK+TL+ L+G +++ G++ + G P Q R C Q D
Sbjct: 365 AILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DA 418
Query: 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729
H +F +R + ++ + E+ +E G+ D L LP GL T
Sbjct: 419 H----------LFDTTVRENLRLARPDATD--EELWAALERVGLADWLRALPD--GLDTV 464
Query: 730 -----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
+R+RL +A L+A+ I+ +DEPT LDA A ++ + +GRTV
Sbjct: 465 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTV 523
Query: 779 VCTIHQP 785
V H
Sbjct: 524 VLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-15
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKV- 653
R+ + D++ PG + ++G SG+GK+TL L G + G I G++ + G +
Sbjct: 20 GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79
Query: 654 ------QHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
+ + Q+ + S P +T+ + I + L ++AE +
Sbjct: 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAV 134
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+ +E G+ D + LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 135 ELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194
Query: 766 RAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+K+ E G V+ H + + E D +V+M G
Sbjct: 195 DLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE------GDIRIGGYPKVQHTFARISG 662
+T + G SGAGK+TL+ ++G + GG I D R Q R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ---RKIG 78
Query: 663 YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722
Q P++ V E++ F + ++ V+E+L + LD + +
Sbjct: 79 LVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNR-----Y 128
Query: 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
LS +++R+ +A L A P ++ +DEP S LD ++ +K + + +
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NL 181
Query: 783 HQPSI----DIFEAF---DDLVLMKNGGRIIYFG 809
+ P I D+ EA D +V+M++ GR+ Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMED-GRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA--- 658
L DI+ G AL+G SG+GK+TL++++ + + G I I G+ +T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
R G Q D+ N TV E+I + +++ +A +E + EL D+++
Sbjct: 76 RQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELPEGYDTVI 132
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
G GV LS QR+R+ IA L+ +P I+ +DE TS LD + V A++ +++ RT
Sbjct: 133 GERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTT 190
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGG 803
H+ S I A D +V++++G
Sbjct: 191 FVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII---EGDIRIGGYPKVQH 655
L S ++ T G L G +G+GKTTL+ +++G G I GDI + H
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
Y + P +TV E++ F W + + L+ + L +
Sbjct: 77 -------YLGHRNAMKPALTVAENLEF--WAAFLGGEEL-----DIAAALEAVGLAPLAH 122
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A ++ + G
Sbjct: 123 ----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG 177
Query: 776 RTVVCTIHQPSIDIFEA 792
V+ H P + + A
Sbjct: 178 GIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 58/221 (26%), Positives = 115/221 (52%), Gaps = 30/221 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGI-IEGDIRIGGYPKVQHTF 657
L D++ G +T+++G +GAGK+TL+ ++S + +G I I+G + + P +
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPS-KELA 74
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWL----RLSTQIDSKTKAEFVNEVLQTIELDGI 713
++S ++N I+S +TV + + F + RL+ + +NE ++ + L+ +
Sbjct: 75 KKLSILKQENHINS-RLTVRDLVGFGRFPYSQGRLTKE-----DRRIINEAIEYLHLEDL 128
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV- 772
D + + LS QR+R IA+ L + + +DEP + LD + + +M+ ++ +
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 773 ETGRTVVCTIHQPSIDIFEA---FDDLVLMKNGGRIIYFGP 810
E G+T+V +H DI A D +V +KN G+++ G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 27/204 (13%)
Query: 616 ALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ---HTFARISGYCEQN-- 667
A++G +GAGK+TL R GI++ G + I G P + + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 668 -DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726
I SP TVE+ I F ++ +D +T A V+ L + G+++ +P + L
Sbjct: 89 DQIFSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHML---GLEELRDRVP--HHL 138
Query: 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQP 785
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ ET G TV+ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 786 SIDIFEAFDDLVLMKNGGRIIYFG 809
+D+ D + + + GRI+ +G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 7e-15
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSST 95
+ +L++ GL+ A+ V R +SGG K+RL+ L+ P L +DE ++GLD +
Sbjct: 118 EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDP-ELLILDEPTSGLDPES 171
Query: 96 TFQIVSFLKHLVHITDATALIS--LLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFF 153
+I L+ L T L+S +L+ E +L D VI++ +GKI+ G + F
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEKF 228
Query: 154 EGCGFRC--PDRKGVADFLQEVISRKDQAQYWH 184
G G P+R +A+ L+ + K + +
Sbjct: 229 GGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 8e-15
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 31/248 (12%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHT 656
+ + +I+ PG + L+G +GAGKTT R G++E G+I G P Q
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTF-----RMILGLLEPTEGEITWNGGPLSQEI 70
Query: 657 FARISGYC-EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
RI GY E+ ++ P +TVE+ + + A L+ + + + K + L+ +E+ G K
Sbjct: 71 KNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAW---LERLEIVGKKT 125
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
+ LS ++++ ++ P ++ +DEP SGLD + A+ + E G
Sbjct: 126 KKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY---------FGP--LGQHSCKVIEYFEC 824
T++ + H+ + E D L+++K G ++Y FG L S +E
Sbjct: 181 ATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239
Query: 825 IPGVLKIK 832
IPG+LKI
Sbjct: 240 IPGILKIT 247
|
Length = 300 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKV 653
++ L D++ + + G L+G SG+GK+TL + G + T G I +G + ++
Sbjct: 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 654 QHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
+ + Q+ + S P +T+ E I + + + E V +L + L
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLP 135
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
++ L P + LS QR+R+ IA L NP ++ DEPTS LD A ++ +K +
Sbjct: 136 --EEVLNRYP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 772 -VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
E G T++ H + A D + +M G+I+ G
Sbjct: 192 QEELGLTLLFITHDLGVVAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 9e-15
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 24/218 (11%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY-P-KVQHTFA 658
DI+ G + +G +GAGK+T + +L+G ++ G +R+ G P + + +
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTG-----LLLPTSGKVRVNGKDPFRRREEYL 96
Query: 659 RISGYCEQNDIHSP-NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDS 716
R G + ++ +S+ L+L +I AE ++ + + ++L+G +K
Sbjct: 97 RSIGLVMGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-G 775
V LS QR R +A L+ P ++F+DEPT GLD A A + +K E
Sbjct: 154 ------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
TV+ T H DI D VL+ + G++++ G L Q
Sbjct: 208 ATVLLTTHIFD-DI-ATLCDRVLLIDQGQLVFDGTLAQ 243
|
Length = 325 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-15
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGYPKVQ---HT 656
L I+ + + G A++G SG+GK+TL ++ G G +R+ G Q T
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK-----TKAEFVNEVLQTIELD 711
F + GY Q D+ TV E+I R D + K V+E++ + D
Sbjct: 390 FGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEKIIEAAKLAGVHELILRLP-D 442
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
G D+++G PG LS QR+R+ +A L +P ++ +DEP S LD + A+K +
Sbjct: 443 GY-DTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
G TVV H+PS + D ++++++ GRI FG
Sbjct: 501 KARGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 15/214 (7%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQH 655
+L DI+ + PG A++G SG+GK+TL+ +L G+I I G +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDS 400
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
RI G Q D + T+ E+I +I+ K +E + L D
Sbjct: 401 LRKRI-GIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGYD 456
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
++VG GVN LS QR+RL IA L+ NP I+ +DE TS LD A + A+K +++ G
Sbjct: 457 TIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-G 514
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
RT + H+ S + D ++++ N GRI+ G
Sbjct: 515 RTTLIIAHRLS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 19/215 (8%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQ 654
R+ L DI+ + G + L+G +GAGKTT + ++ G II G++ G P
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDI 66
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
RI GY + P + V + +V+ A L+ + +++ + + E L+ +EL
Sbjct: 67 AARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRID---EWLERLELSEYA 122
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+ V LS ++++ ++ +P ++ +DEP SGLD + ++ +
Sbjct: 123 NK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
G+TV+ + HQ +++ E D VL+ N GR + +G
Sbjct: 178 GKTVILSTHQ--MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGG--YPKV 653
+L D+ T G + A++G SG+GK+TL++++ G++E G + + G P +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNII------GLLEKFDSGQVYLNGQETPPL 65
Query: 654 QHTFARIS-----GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
A GY QN N TVEE+ L L + +K E + + +
Sbjct: 66 NSKKASKFRREKLGYLFQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEAL 119
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
E G+ L + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 120 EKVGLNLKLK--QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 769 KNVVETGRTVVCTIHQPSI 787
+ + G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-14
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV-QHTFARI 660
L DI+ R G + ALMG +GAGK+TL+ +LSG G I I G T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 661 -SG----YCEQNDIH-SPNITVEESIVFSAWL-RLSTQ---IDSKTKAEFVNEVLQTIEL 710
+G Y E +H P +TV E++ +L +L + ++ + E L+ + +
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
D D+ + LS QR+ + IA L N +I DEPTS L AR + R ++
Sbjct: 131 DIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185
Query: 771 VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808
+ GR ++ H+ +IF D + + K+G + F
Sbjct: 186 LRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATF 222
|
Length = 501 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 52/218 (23%)
Query: 564 KMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGA 623
+IL + ++V+F GF + L+D++ + PG L L+G +GA
Sbjct: 3 PIILYLDGVSVSF---------------GGF-----KALNDLSFSVDPGELRVLIGPNGA 42
Query: 624 GKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVE 677
GKTTLMDV++G R G + +GD + P +H AR G + + N+TV
Sbjct: 43 GKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP--EHRIARA-GIGRKFQKPTVFENLTVR 99
Query: 678 ESIVFSAWLRLSTQID-----------SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726
E+ L L+ D + ++E+L TI L +D L L L
Sbjct: 100 EN------LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----L 148
Query: 727 STEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAT 763
S Q++ L I + L +P ++ +DEP +G+ DA T
Sbjct: 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
|
Length = 249 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-14
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653
+ L D++ T G L ++G SG GKTTL+++++G T G I++ G
Sbjct: 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
R G QN+ P + V +++ F LR I+ + E +++L + L+G
Sbjct: 71 GPGAER--GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGA 125
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAATVMRAVK 769
+ + LS R+R+ IA L P ++ +DEP LDA + ++ +
Sbjct: 126 EHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 770 NVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG-GRIIYFGPLG 812
ETG+ V+ H DI EA LV++ G GR++ PL
Sbjct: 181 ---ETGKQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 61/298 (20%), Positives = 113/298 (37%), Gaps = 66/298 (22%)
Query: 535 GSDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGF 594
S L PK+ P+ + ++ + ++V R+NG
Sbjct: 1 QLAHSESSRGVELPEPKEPKKRH-PIEINEPLIELKNVSV---------------RRNGK 44
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---------------RKTGG 639
+L D++ PG A++G +GAGKTTL+ +L+G G
Sbjct: 45 K-----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99
Query: 640 IIEGDIRIGGYPKVQHTFARISGYC--EQNDIHSPNITVEESIVFSAWL----RLSTQID 693
I ++R RI G E ++ TV + +V S + +
Sbjct: 100 TIF-ELR-----------KRI-GLVSSELHERFRVRETVRD-VVLSGFFASIGIYQEDLT 145
Query: 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
++ A +L+ + + D G LS +++R+ IA LV +P ++ +DEP
Sbjct: 146 AEDLAA-AQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 754 SGLDARAAATVMRAVKNVV--ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
GLD A ++ ++ + ++ H +I F +L+K G ++ G
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 6e-14
Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HT 656
LL D++ T RPG + A++G +GAGK+TL+ LSG + G++R+ G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 657 FARISGYCEQNDIHSPNI----TVEESIVFSAWL-RLSTQIDSKTKAEFVNEVLQTIELD 711
AR Q ++ TVEE +V + R + V L ++L
Sbjct: 74 LARRRAVLPQ----HSSLSFPFTVEE-VV---AMGRAPHGLSRAEDDALVAAALAQVDLA 125
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAATVM 765
+ LS +++R+ +A L P + +DEPTS LD V+
Sbjct: 126 HLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180
Query: 766 RAVKN-VVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
R + E G V+ +H D+ A D +VL+ GR++ G
Sbjct: 181 RLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLHQ-GRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-14
Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 36/210 (17%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP---------KVQHTFAR 659
G + AL+G +GAGK+TL +G I++ G++ I G P +V+ T
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNG-----ILKPTSGEVLIKGEPIKYDKKSLLEVRKTV-- 80
Query: 660 ISGYCEQN---DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
G QN + +P TVEE + F L+ + + + V E L+ + ++G ++
Sbjct: 81 --GIVFQNPDDQLFAP--TVEEDVAFGP---LNLGLSKEEVEKRVKEALKAVGMEGFENK 133
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
P + LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ + ++ + G
Sbjct: 134 P---P--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGI 188
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
T++ + H +D+ + D V + + G+II
Sbjct: 189 TIIISTHD--VDLVPVYADKVYVMSDGKII 216
|
Length = 275 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 7e-14
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQ 654
+ Q+L ++ T G + AL+G +GAGKTTL+ + G ++G I I G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP--P 69
Query: 655 HTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDG 712
H AR GY + P +TVEE+++ A+ R +K KA + V + L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARR----RAKRKAR-LERVYELFPRLKE 124
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + A++ +
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 773 ETGRTVV 779
+ G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-14
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 59 RGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS 117
RG+S Q+KRLT G EL P+ LF+DE ++GLDS + IV FLK L + L +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCT 164
Query: 118 LLQPAPETFDLFDDVILMAE-GKIVYHG 144
+ QP+ F+ FD ++L+ GK VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 8e-14
Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM---- 629
+ FE++ + ++ R +L D++ T G A++G SG+GK+T++
Sbjct: 1 IEFENVTF-----------AYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 630 ---DVLSGRKTGGIIEG-DIRIGGYPKV-QHTFARISGYCEQNDIHSPNITVEESIVFSA 684
DV SG I+G DIR +V + R G Q D N T+ +I +
Sbjct: 49 RFYDVSSGSIL---IDGQDIR-----EVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGR 99
Query: 685 WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744
++ KA +++ + DG D++VG G+ LS +++R+ IA ++ NP
Sbjct: 100 PDATDEEVIEAAKAAQIHDKIMRFP-DGY-DTIVGERGLK-LSGGEKQRVAIARAILKNP 156
Query: 745 SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804
I+ +DE TS LD + A+++V GRT + H+ S I A D +++ GR
Sbjct: 157 PILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLS-TIVNA--DKIIVLKDGR 212
Query: 805 II 806
I+
Sbjct: 213 IV 214
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 9e-14
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 27/233 (11%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK-VQHTFAR 659
+++D++ T G L+G +GAGK+T+ +L G + G I + G P + AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 660 IS-GYCEQNDIHSPNITVEESI-VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
++ G Q D P TV E++ VF + +ST + + +L+ L+ D
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADVR 132
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A + +++++ G+T
Sbjct: 133 VAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 778 VVCTIHQPSIDIFEAF----DDLVLMKNGGRIIYFGPLG----QHSCKVIEYF 822
++ T H E D L ++++G +I P Q C VIE +
Sbjct: 188 ILLTTH-----FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIY 235
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 9e-14
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS------GY 663
RPG L+GV+GAGKTT +L+G T + GD + G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723
C Q D +T E + A LR + ++ + N +Q++ L D L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
S +++L+ A+ L+ P ++ +DEPT+G+D +A + + +++ GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTF 657
+++ ++ T G L+G +GAGK+T+ ++ G + G I + G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 658 ARISGYCEQNDIHSPNITVEES-IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
ARI G Q D TV E+ +VF + +ST + + +L+ L+ D+
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADA 168
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
V LS ++RLT+A L+ +P ++ +DEPT+GLD A + +++++ G+
Sbjct: 169 RVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 777 TVVCTIHQPSIDIFEAF----DDLVLMKNGGRIIYFGPLG----QHSCKVIEYF 822
T++ T H E D L +++ G +I P C+VIE +
Sbjct: 224 TILLTTH-----FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIY 272
|
Length = 340 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG------YPKVQH 655
L D+ G L+G SG GKTT + +++G + G I IGG PK
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK--- 70
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ--IDSKTKAEFVNEVLQTIELDGI 713
R QN P++TV ++I F LR + ID + V EV + ++++ +
Sbjct: 71 --DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELLQIEHL 123
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA--VKNV 771
D LS QR+R+ + +V P + MDEP S LDA+ MRA +
Sbjct: 124 LDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-MRAELKRLQ 177
Query: 772 VETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG 802
G T + H D EA D + +M +G
Sbjct: 178 QRLGTTTIYVTH----DQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQHTFA 658
L D++ G L G SGAGK+TL+ ++ G R T G I+ + + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 659 RIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R G Q+ P+ TV E++ LR + K E V + ++L G+K
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LR----VIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
LP + LS +++R+ IA +V P+++ DEPT LD + +MR + + G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807
V+ H +++ VL GR++
Sbjct: 190 VLMATH--DLELVNRMRHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658
+L I T + G + ++G SG+GK+TL+ ++ + G I I G K+
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGL-KLTDDKK 69
Query: 659 RIS------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
I+ G Q P++TV E+I + ++ +KAE L+ +E G
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLAP-----IKVKGMSKAEAEERALELLEKVG 124
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+ D P LS Q++R+ IA L NP ++ DEPTS LD V+ +K++
Sbjct: 125 LADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 773 ETGRTVVCTIHQPSIDIF--EAFDDLVLMKNGGRI 805
E G T+V H+ F E D ++ M + GRI
Sbjct: 183 EEGMTMVVVTHEMG---FAREVADRVIFM-DDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 26/212 (12%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FAR-ISG 662
T G + A++G SGAGK+TL+++++G +T G+I I G V HT R +S
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILING---VDHTASPPAERPVSM 75
Query: 663 YCEQNDIHSPNITVEESIVF--SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
++N++ + ++TV ++I S L+L+ + + E V + G+ L L
Sbjct: 76 LFQENNLFA-HLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV---GLAGFLKRL 126
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVV 779
PG LS QR+R+ +A LV I+ +DEP S LD A ++ V + E T++
Sbjct: 127 PGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811
H P D D V+ + GRI G
Sbjct: 185 MVTHHPE-DA-ARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-13
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 30/230 (13%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGG------- 649
+ + ++ + G + ++G SG+GK+ L + G + I+ G+I G
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 650 ---YPKVQHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
K++ I+ Q+ + S P +T+ + I LRL + SK E
Sbjct: 79 EKELRKIRGK--EIA-MIFQDPMTSLNPVMTIGDQIAEV--LRLHGKGLSK--KEAKERA 131
Query: 705 LQTIELDGIKDSLVGL---PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
++ +EL GI D L P + LS R+R+ IA+ L NP ++ DEPT+ LD
Sbjct: 132 IELLELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 762 ATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
A ++ +K + E G ++ H + + E D + +M GRI+ GP
Sbjct: 190 AQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 22/205 (10%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652
G + L +L + + G A++G SG+GK+TL+ VL+G G++R+ G P
Sbjct: 17 GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQP- 73
Query: 653 VQHTF---------ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE 703
H AR G+ Q+ PN+T E++ LR + DS+ A+
Sbjct: 74 -LHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---A 129
Query: 704 VLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
+L+ + G+ L P LS +++R+ +A P ++F DEPT LD
Sbjct: 130 LLEAV---GLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 764 VMRAVKNVV-ETGRTVVCTIHQPSI 787
+ + + E G T+V H P +
Sbjct: 185 IADLLFALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 51/192 (26%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 652
L DI +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 653 VQHTFARISGYCEQNDIHSPNITVEE-----SIVF--------------SAWLRLSTQID 693
+I+ P + V E +VF + LRL I
Sbjct: 74 --------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH-GIK 118
Query: 694 SKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752
K E V L+ L D +KD L GLS Q++RL IA L P ++ MDEP
Sbjct: 119 DKELDEIVESSLKKAALWDEVKDRLHKSA--LGLSGGQQQRLCIARALAVKPEVLLMDEP 176
Query: 753 TSGLDARAAATV 764
TS LD + +
Sbjct: 177 TSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQH----- 655
D++ PG + ++G SG+GKTTL+ +SGR G + +R G +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 656 --TFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDS------KTKAEFVNEVLQ 706
R G+ QN + V S + RL +++ EV
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQV--SAGGNIGERLMAIGARHYGNIRAEAQDWLEEV-- 138
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
I+LD I D LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 139 EIDLDRIDD----LP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 767 AVKN-VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
++ V E G VV H ++ A D L++MK G +
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQVV 231
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
D++ + + G + AL+G +GAGK+TLM +L G + G+IR+ G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 660 ISGYCEQND--------IHS-----PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
I D +H P +TV E+I+ ID + + E+ +
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
L D+ V LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 RYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181
Query: 767 AVKNVVETGRTVV 779
++ + G+T++
Sbjct: 182 ILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT-- 656
L++++ G ++G SG+GK+TL +L+G + + G I + G P
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 657 --FARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
F R Q+ S P TV + S + ++ + + ++ G
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL--------SEPLRPHGLSKSQQRIAELLDQVG 129
Query: 713 IKDS-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
+ S L P + LS QR+R+ IA L+ P ++ +DEPTS LD A ++ + +
Sbjct: 130 LPPSFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187
Query: 772 VETGRTVVCTI-HQPSIDIFEAF-DDLVLMKNGGRIIYFGPLGQ 813
+ I H + + E D + +M N G+I+ GP +
Sbjct: 188 KKERGLTYLFISHD--LALVEHMCDRIAVMDN-GQIVEIGPTEE 228
|
Length = 252 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-13
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR-----ISG 662
TF G +TA++G SG+GK+TL+++++G +T G + I G V T A +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLING---VDVTAAPPADRPVSM 74
Query: 663 YCEQNDIHSPNITVEESIVF--SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
++N++ ++TVE+++ S L+L T D + + V G+ L
Sbjct: 75 LFQENNLF-AHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARV-------GLAGLEKRL 125
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVV 779
PG LS +R+R+ +A LV + ++ +DEP + LD A ++ V ++ ET TV+
Sbjct: 126 PGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVL 183
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
HQP D +V + N GRI G
Sbjct: 184 MVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 6e-13
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 48/223 (21%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 652
Q L DI G L A++G G+GK++L+ L G K G +
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS---------- 63
Query: 653 VQHTFARISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
V + A Y Q P N T+ E+I+F D E +V++
Sbjct: 64 VPGSIA----YVSQ----EPWIQNGTIRENILFGK------PFDE----ERYEKVIKACA 105
Query: 710 LDGIKD---------SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 760
L+ D + +G G+N LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 106 LE--PDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 761 AATVM-RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ + ++ +T + HQ + + D +V++ NG
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 63/278 (22%)
Query: 565 MILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAG 624
IL E L+V+F+ GF L+D++ PG L ++G +GAG
Sbjct: 1 PILYLEGLSVSFD---------------GFKA-----LNDLSLYVDPGELRVIIGPNGAG 40
Query: 625 KTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARI--SGYCE--QNDIHSPNITVEE 678
KTT+MDV++G R EG + GG +I +G Q N+TV E
Sbjct: 41 KTTMMDVITGKTRPD----EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE 96
Query: 679 SIVFSAWLRLSTQID-----------SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727
+ L L+ D S + + + EVL+TI L D L GL LS
Sbjct: 97 N------LELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL-----LS 145
Query: 728 TEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAT--VMRAVKNVVETGRTVVCTIHQ 784
Q++ L I + L+ +P ++ +DEP +G+ D T +++++ +VV H
Sbjct: 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEH- 200
Query: 785 PSIDIFEAFDDLVLMKNGGRIIYFGPLG--QHSCKVIE 820
++ + D V + + G ++ G L Q +VIE
Sbjct: 201 -DMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPRVIE 237
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 49/213 (23%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---------- 649
++L + T + G + A+MG +G+GK+TL + G + EG+I G
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77
Query: 650 -----------YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA 698
YP I G +T + +LR + +
Sbjct: 78 RARAGIFLAFQYP------VEIPG-----------VTNSD------FLRAAMNARRGARG 114
Query: 699 ---EFVNEVLQTIELDGIKDSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
EF+ E+ + EL G+ + + VN G S ++KR I L+ P + +DEP S
Sbjct: 115 ILPEFIKELKEKAELLGLDEEFLE-RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSI 787
GLD A V + + E GR V+ H +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFAR 659
L ++ + G L+G SG GKTTL+ +++G +T G+I + G + + R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKD-ITNLPPHKR 72
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
QN P++TV E+I F LRL ++ E V E L ++L+G +
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYANRKP- 128
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTV 778
+ LS Q++R+ IA LV P ++ +DEP LD + + +K + E G T
Sbjct: 129 ----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 779 VCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
V H D EA D + +M N G+I G
Sbjct: 185 VFVTH----DQEEALTMSDRIAVM-NKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 7e-13
Identities = 54/198 (27%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHT 656
+++ D++ T G + L+G +GAGKTT ++ G R G II D I P H
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--LHA 74
Query: 657 FARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
AR GY Q ++V ++++ A L++ + ++ + + NE+++ ++ ++D
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
S+ LS +R+R+ IA L ANP I +DEP +G+D + + R ++++ ++G
Sbjct: 133 SMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG 187
Query: 776 RTVVCTIH--QPSIDIFE 791
V+ T H + ++ + E
Sbjct: 188 LGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 8e-13
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 48/230 (20%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY- 650
F L DI+ + + G L+G SG GKTTL+ +++G R+T G I GG
Sbjct: 14 FGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG----TIYQGGRD 67
Query: 651 -----PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEV 704
P+ R G Q+ PN+TV ++I + L + + AE V E+
Sbjct: 68 ITRLPPQ-----KRDYGIVFQSYALFPNLTVADNIAYG----LKNRGMGRAEVAERVAEL 118
Query: 705 LQTIELDGIKDSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
L LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 119 L----------DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
Query: 760 AAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRI 805
+ ++ + G T + H D EA D +V+M N G I
Sbjct: 169 VREHLRTEIRQLQRRLGVTTIMVTH----DQEEALSMADRIVVM-NHGVI 213
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQHT 656
++++ ++ + + G + L+G +GAGKTT ++ G + G I I P H
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP--MHK 71
Query: 657 FARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
AR+ GY Q +TVEE+I A L + + K + E + E+L+ + ++
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENI--LAVLEI-RGLSKKEREEKLEELLEEFHITHLRK 128
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
S LS +R+R+ IA L NP + +DEP +G+D A + + +K + + G
Sbjct: 129 SKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 776 RTVVCTIH 783
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK------TGGIIEGDIRIGGYPKVQ 654
LL+++ T G + LMG SG GK+TL+ + G TG + + R+ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
R G Q+ + P+++V ++++F+ L + + N L+ LDG
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTL---MDVLSGRKTGGIIEGDIRIGGYPKVQHT 656
+L I +PG + A++G SG+GKTTL +++L + G I GDI I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 657 FARIS------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFV---NEVLQT 707
I G+ QN P+ TV E+I+ + + K E E+L
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELLAK 131
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+ L G + S P LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 132 VGLAGKETSY---P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFGP 810
++ + + RT+V H+ S A D D + + GRI+ GP
Sbjct: 187 IRQLAQEKRTMVIVTHEMSF----ARDVADRAIFMDQGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 1e-12
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 17/199 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSG-RKTGGIIEGDIRIGGYP 651
Q + ++ + G + AL+G SG GKTT + D+ G R TG I+ I G P
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG-P 76
Query: 652 KVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
+V R G Q P ++V +++V A L+L+ D E L+ L
Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 711 -DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
D +KD L P GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 135 WDEVKDRL-KTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 770 NVVETGRTVVCT--IHQPS 786
++ + ++ T +HQ +
Sbjct: 193 DLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 658
L ++ T G + G +G GKTTL+ +L+G R G + + + +
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT--ALAEQRDEPH 72
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
R Y P ++ E++ F A + Q + + L + L G +D
Sbjct: 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFED--- 122
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
LP LS Q++RL +A ++ + +DEPT+ LD A + ++ + G V
Sbjct: 123 -LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 779 VCTIHQP 785
+ T HQ
Sbjct: 181 LLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE------GDIRIGGYPKVQHTFARISG 662
GI TAL G SG+GKT+L+++++G R G IE D G + + R G
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK---RRIG 79
Query: 663 YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722
Y Q+ P+ TV ++ + W + Q D Q + L GI+ L PG
Sbjct: 80 YVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYPG 127
Query: 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCT 781
LS +++R+ I L+ P ++ MDEP + LD ++ ++ + E ++
Sbjct: 128 T--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 782 IHQPSID-IFEAFDDLVLMKNGGRIIYFGPLGQ 813
H S+D + D +V+++N G++ GPL +
Sbjct: 186 SH--SLDEVLRLADRVVVLEN-GKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA--RISGYCEQNDIHSPNI 674
L+G SG GKTTL+ +L+G + G I + G V + R Q+ P++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDG-EDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL 734
TVEE++ F +R ++ V E L+ ++L+ D + LS Q++R+
Sbjct: 58 TVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRV 109
Query: 735 TIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 793
+A LV P I+ +DEP S LD + + +K + E G T V H D EA
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEAM 165
Query: 794 ---DDLVLMKNG 802
D + +M+ G
Sbjct: 166 TMSDRIAIMRKG 177
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
+ L + T G A++G SG+GK+TL+ +L+G +G I + G
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE-------- 401
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIEL-DGIKDSL 717
I+ EQ + ++ + +FS LR + ++ + + E + LQ + L ++ +
Sbjct: 402 IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAP 461
Query: 718 VGLP-----GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
GL G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
E G+T++ H+ E D ++++ N G+II
Sbjct: 522 E-GKTLLMVTHRLR--GLERMDRIIVLDN-GKII 551
|
Length = 573 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 22/212 (10%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----KTGGIIEGDIRIGGYPKVQHT 656
+L+D++ + G +TAL+G +G GK+TL+ + R ++G + GD I Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 657 FARISGYCEQNDIHSPNITVEESIVF--SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
AR Q+ + ITV E + + S WL L ++ ++ A VN+ ++ ++ +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA-RVNQAMEQTRINHLA 132
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D + LS QR+R +A+ L + ++ +DEPT+ LD +MR ++ +
Sbjct: 133 DRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 775 GRTVVCTIHQPSIDIFEA---FDDLVLMKNGG 803
G+TVV +H D+ +A D LV++ NG
Sbjct: 188 GKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 42/245 (17%)
Query: 574 VTFE--DLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
+TFE RY D P + +I+ +PG + ++G SG+GK+TL +
Sbjct: 1 ITFEHVRFRYKPDGPVILD-------------NISLRIKPGEVVGIVGRSGSGKSTLTKL 47
Query: 632 LSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ 691
+ G + + G H A + + + ++E+++F+ +R
Sbjct: 48 IQRFYVPE--NGRVLVDG-----HDLALADPAWLRRQV---GVVLQENVLFNRSIR--DN 95
Query: 692 IDSKTKAEFVNEVLQTIELDGIK----------DSLVGLPGVNGLSTEQRKRLTIAVELV 741
I + V++ +L G D++VG G GLS QR+R+ IA L+
Sbjct: 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALI 154
Query: 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801
NP I+ DE TS LD + +MR + ++ GRTV+ H+ S + A D +++
Sbjct: 155 HNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-VKNA--DRIIVME 210
Query: 802 GGRII 806
GRI+
Sbjct: 211 KGRIV 215
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP--KVQHT 656
L S ++ T G + G +G+GKTTL+ +L+G G + + G P + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDFQRDS 70
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
AR Y ++V E++ F W + E V E L + L+G +D
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRF--WHADHSD-------EQVEEALARVGLNGFED- 120
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
P V LS Q++R+ +A L++ + +DEPT+ LD A A+ G
Sbjct: 121 ---RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 777 TVVCTIHQP 785
VV T HQ
Sbjct: 177 MVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-12
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 19/217 (8%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
+L + + R G L L+G +GAGKTTL+ ++G T G + + G V+ AR
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDD-VEALSARA 74
Query: 661 SGY----CEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ Q+ S V + + R T ++ A V ++ +
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQF 132
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
D V LS +R+R+ +A L ++ +DEPT+ LD + V+ +V+
Sbjct: 133 ADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
G+T V IH +D+ + D +++ GR+ GP
Sbjct: 188 DGKTAVAAIH--DLDLAARYCDELVLLADGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 656
+ L + T PG + AL+G +GAGK+TLM VLSG T G I I Y K+ H
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKLDHK 75
Query: 657 FARISG----YCEQNDIHSPNITVEESIVFSAWLRLSTQ-------IDSKTKAEFVNEVL 705
A G Y E + I +TV E++ R T+ ID + +L
Sbjct: 76 LAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMML 130
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+ L D V LS ++ L IA L+ + +I MDEPTS L + +
Sbjct: 131 LRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ + + G +V H+ + +I D +MK+G
Sbjct: 186 LIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 89/378 (23%), Positives = 154/378 (40%), Gaps = 68/378 (17%)
Query: 456 RWEKVISGNTTAGMQTLESRGLNFDSSFYWISIG-ALIGFTMLFNA-----------VFT 503
R++ V + N M+ + ++ + S+ A++ F LF A F
Sbjct: 218 RFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFI 277
Query: 504 LALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHR 563
A+ L P KS T ++ Q+ ++ + D+P + TG R +
Sbjct: 278 TAMIALIRPLKSLTNVN------APMQRGLAAAESLFTLLDSPPEKDTG----TRAIERA 327
Query: 564 KMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGA 623
+ + F +T + P R L I+ PG AL+G SG+
Sbjct: 328 RGDVEFRNVTFRY---------PGRDRP---------ALDSISLVIEPGETVALVGRSGS 369
Query: 624 GKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQ--NDIHSPNITVEESIV 681
GK+TL++++ + G I + G+ +T A + D+ N T+ +I
Sbjct: 370 GKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA 427
Query: 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP-------GVNG--LSTEQRK 732
+ + Q D E+ + + +D + LP G NG LS QR+
Sbjct: 428 YGR----TEQADRA-------EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476
Query: 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA 792
RL IA L+ + I+ +DE TS LD + V A++ +++ GRT + H+ S E
Sbjct: 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLS--TIEK 533
Query: 793 FDDLVLMKNGGRIIYFGP 810
D +V+M + GRI+ G
Sbjct: 534 ADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 25/218 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP-----KV 653
L I + G +TA++G +GAGK+TL L+G I++ G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-----ILKPSSGRILFDGKPIDYSRKG 76
Query: 654 QHTFARISGYCEQNDIHSP-NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
G Q+ + + +V + + F A ++ ++ + V+ L+ ++
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEH 133
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+KD P + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 134 LKDK----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 773 -ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
E G T++ H IDI + D V + GR+I G
Sbjct: 189 KELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L DI T G L ++G SG GKTTL+++++G G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEGPGAER-- 72
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
G QN+ P V++++ F L+L+ ++ + E +++L+ + L+G + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVC 780
LS QR+R+ IA L ANP ++ +DEP LDA + + + ETG+ V+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 781 TIHQPSIDIFEAF---DDLVLMKNG-GRII 806
H DI EA +LVL+ G GR++
Sbjct: 185 ITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSG-RKTGGIIEGDIRIGGYP 651
+ L +I +TAL+G SG GK+TL+ D++ G R G ++ I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 652 KVQHTFARISGYCEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
R G Q PN +++ ++I + RL D K E V E L+
Sbjct: 75 IDVVELRRRVGMVFQK----PNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKA 128
Query: 709 EL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L D +KD L GLS Q++RL IA L P ++ +DEPTS LD A +
Sbjct: 129 ALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI 183
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHT 656
++++D++ G + L+G +GAGKTT ++ G +G I+ D I P H
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP--MHK 75
Query: 657 FARIS-GYCEQNDIHSPNI----TVEESIVFSAWLRLSTQIDSKTKAE---FVNEVLQTI 708
AR+ GY Q +I TVE++I+ L + KAE ++ +L+
Sbjct: 76 RARLGIGYLPQ----EASIFRKLTVEDNIM----AVLEIREKDLKKAERKEELDALLEEF 127
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
+ ++DS + LS +R+R+ IA L ANP I +DEP +G+D A + R +
Sbjct: 128 HITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 769 KNVVETGRTVVCTIH 783
K++ + G V+ T H
Sbjct: 183 KHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFARISGYCEQND 668
G + A+MG SGAGK+TL+++++G G I D G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 669 IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728
++TV ++I L K AE +V+ + GI D L LP LS
Sbjct: 82 F--AHLTVRQNIG------LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSI 787
QR+R+ +A LV I+ +DEP S LD ++ VK + E RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 788 DIFEAFDDLVLMKNG 802
D + ++ G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 27/230 (11%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY-- 650
++ L D++ + G + ++G SGAGK+TL+ ++G R T G + + G
Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLVDGTDL 69
Query: 651 ----PKVQHTFARISGYCEQ--NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
K R G Q N + S TV E++ L +I KAE V
Sbjct: 70 TLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVA------LPLEIAGVPKAEIEERV 121
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L+ +EL G++D P LS Q++R+ IA L NP ++ DE TS LD ++
Sbjct: 122 LELLELVGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 765 MRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
+ ++++ E G T+V H+ +++ + D V + G ++ G + +
Sbjct: 180 LALLRDINRELGLTIVLITHE--MEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 19/184 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
+++I+ T + L+G +GAGK+TL+ +++G R T G+I G+P + +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
I E ++ N+T E+ L++ T + + ++EVL ++L
Sbjct: 72 IGSLIESPPLYE-NLTAREN------LKVHTTLLGLPDSR-IDEVLNIVDLTNTGKKKAK 123
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
S ++RL IA+ L+ +P ++ +DEPT+GLD + +++ E G TV+
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 780 CTIH 783
+ H
Sbjct: 179 LSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 20/228 (8%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII--EG---DI 645
F +L + F +T L+G +G GK+TL LSG R G + +G D
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 646 RIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
G ++ A + EQ ++ ++ I FS LR + + V+E L
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYT---DIDSDIAFS--LR-NLGVPEAEITRRVDEAL 121
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
++ + + LS Q+KR+ IA LV + +DEPT+GLD ++
Sbjct: 122 TLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
++ +V G V+ + H ID+ D V + G+I+ G G+
Sbjct: 177 AIIRRIVAQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAPGE 222
|
Length = 271 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-11
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 45/243 (18%)
Query: 574 VTFEDL--RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
+TFE++ RY D P ++LS++ +PG ++G SG+GK+TL +
Sbjct: 456 ITFENIRFRYAPDSP-------------EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKL 502
Query: 632 LSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRL 688
L T G + + G R G + ++E+++FS +R
Sbjct: 503 LQRLYTPQ--HGQVLVDGVDLAIADPAWLRRQMG-----------VVLQENVLFSRSIRD 549
Query: 689 STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP-GVN--------GLSTEQRKRLTIAVE 739
+ + A F V+ +L G D + LP G N LS QR+R+ IA
Sbjct: 550 NIAL-CNPGAPF-EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607
Query: 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799
LV NP I+ DE TS LD + A +MR ++ + GRTV+ H+ + A D ++++
Sbjct: 608 LVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR--LSTVRACDRIIVL 664
Query: 800 KNG 802
+ G
Sbjct: 665 EKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 19/237 (8%)
Query: 590 RKNGFN--QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647
R G + R +L++++ + G L+G SG GK+TL +L G + +G +
Sbjct: 13 RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSF 70
Query: 648 GGYPKVQ------HTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAE 699
G Q F R Q+ + P +TV + I LR T +D +
Sbjct: 71 RGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKA 128
Query: 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
+ E+L + L + LP LS Q +R+ IA L P +I +DE S LD
Sbjct: 129 RIAELLDMVGLR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 760 AAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSC 816
A ++ ++ + + T I + + ++F V + + G+I+ + Q
Sbjct: 185 LQAVILELLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 55/236 (23%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEG---------DIRIG 648
L +++ T RPG A++G G+GK+TL+ +L G + T G +++G D+R
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR-- 538
Query: 649 GYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVN--EVLQ 706
I GY Q D T+ ++I A + + E+L+
Sbjct: 539 ---------RNI-GYVPQ-DPRLFYGTLRDNIALGA--------------PYADDEEILR 573
Query: 707 TIELDGIKDSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
EL G+ + + P LS QR+ + +A L+ +P I+ +DEPTS +D
Sbjct: 574 AAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
Query: 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
R+ +K + G+T+V H+ S + + D +++M + GRI+ GP Q
Sbjct: 634 NRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGPKDQ 685
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 34/226 (15%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQH 655
L L++I+ TF + ++G SG+GK+TL+ +G K G I GDI IG K
Sbjct: 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG--DKKN- 95
Query: 656 TFARISGYCEQNDIHS--------------PNI-----TVEESIVFSAWLRLSTQIDSKT 696
+ I + P T+E+ I+F + ++K
Sbjct: 96 -NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK 154
Query: 697 KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756
A+F + G+ DS + GLS Q++R+ IA L P I+ DEPT+GL
Sbjct: 155 LAKFYLNKM------GLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207
Query: 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
D + +M+ + + +TV H + E D++++M G
Sbjct: 208 DPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQH 655
+L ++ T PG AL+G SG GK+T++ +L + G+I + G ++
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 656 TFARISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
++I G Q P + T+ E+I + +++ K +++ + ++ DG
Sbjct: 75 LRSQI-GLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLP-DG 128
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
D+LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + V A+ +
Sbjct: 129 Y-DTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186
Query: 773 ETGRTVVCTIH 783
+ GRT + H
Sbjct: 187 K-GRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 41/223 (18%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTF 657
+L D++ T PG +TAL+G SG+GK+T++ +L + GG + D G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP------ 77
Query: 658 ARISGYCEQNDIHSPNITV-EESIVFSAWLR------LSTQIDSKTKA--------EFVN 702
IS Y E +HS V +E ++F+ L+ L + K F++
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFIS 134
Query: 703 EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
E+ + + VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 135 ELASGYDTE------VGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 763 TVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
V +A+ + E RTV+ H+ S + A D +L+ +GGRI
Sbjct: 188 QVQQALYDWPER-RTVLVIAHRLST-VERA--DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 15/216 (6%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---- 654
++L I+ + G + ++G SG+GK+TL+ L+G + G I + G
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDI 72
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
R G Q P++TV E++ + + SK +A + L+ +E G+
Sbjct: 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLA--PVK-VKKLSKAEAR--EKALELLEKVGLA 127
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D P LS Q++R+ IA L +P ++ DEPTS LD V+ +K++ E
Sbjct: 128 DKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
G T++ H+ + D V+ + G+II GP
Sbjct: 186 GMTMIIVTHE--MGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 33/208 (15%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFARISGYCEQN 667
G L L+G +GAGKTTL+ R G+I +G +++ G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 668 DIHSPN--ITVEESIV-----FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
+ + I+V +++ WLR D V + L+ + L + D VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
LS QR+R+ +A L PS++ +DEP +GLD + + G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 781 TIHQPSIDIFEAFD--DLVLMKNGGRII 806
T H D+ +A D V++ N GR+I
Sbjct: 169 TTH----DLAQAMATCDRVVLLN-GRVI 191
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY 650
+ + L +++ G A++G +G+GK+T+ +L+G ++ G+I+I G
Sbjct: 17 YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-----LLKPQSGEIKIDGI 71
Query: 651 PKVQHTFARIS---GYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
+ I G QN D TVE+ I F + ++ K + ++++ +
Sbjct: 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAK 128
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ G++D L P LS Q++R+ IA L NP II DE TS LD + + +
Sbjct: 129 KV---GMEDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK 183
Query: 767 AVKNVVETG-RTVVCTIHQPSIDIFEAFD-DLVLMKNGGRIIYFG 809
+ ++ +T +T++ H D+ EA D V++ + G++I G
Sbjct: 184 IMVDLRKTRKKTLISITH----DMDEAILADKVIVFSEGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-11
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 33/221 (14%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVL-------SGRKTGGIIEGDIRIGGYPKVQ 654
L + T RPG AL+G SGAGK+TL +L SGR I + G Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR---------ILLDGVDLRQ 406
Query: 655 ---HTFARISGYCEQNDIHSPNI---TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
Q+ P + +V E+I + ++++ +A +E +
Sbjct: 407 LDPAELRARMALVPQD----PVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS-- 460
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
L D+ +G GV LS QR+R+ IA ++ + I+ +DE TS LDA + V +A+
Sbjct: 461 ALPEGYDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
Query: 769 KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ + GRT + H+ + + +A D +V+M GRI+ G
Sbjct: 520 E-TLMKGRTTLIIAHRLAT-VLKA-DRIVVMDQ-GRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 31/243 (12%)
Query: 588 AMRKNGFNQT--RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645
+++ NG N Q L DIT G L+G SGAGK++L+ VL+ + G +
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTL 59
Query: 646 RIGGYPKVQHTFARISGYCEQNDIHS------------PNITVEESIVFSAWLRLSTQID 693
I G F++ D+ P++TV+E+++ A R+
Sbjct: 60 NIAGN---HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSK 115
Query: 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
+ A ++L+ + L D P LS Q++R+ IA L+ P ++ DEPT
Sbjct: 116 DQALARAE-KLLKRLRLKPYADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
+ LD A ++ +K + ETG T V H+ +++ V+ G I+ G
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHE--VEVARKTASRVVYMENGHIV---EQGD 224
Query: 814 HSC 816
SC
Sbjct: 225 ASC 227
|
Length = 242 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 25/222 (11%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHT 656
+L ++ G +T ++G +G GKTTL+ L G K+G I I P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 657 FARIS---GYCEQNDIHSPNITVEESI--VFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
R Y Q P +TVEE++ +A R S +I + F VL+
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF--PVLK----- 122
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
++G G + LS Q+++L IA LV P ++ +DEPT G+ + R ++ +
Sbjct: 123 ----EMLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL 177
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
G + + Q +D D + GR++ G +
Sbjct: 178 RAEGGMAILLVEQ-YLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFA 658
L D++ + G A++G +G+GK+TL +L+G ++ G I +GG + T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-----LLLPEAGTITVGGMVLSEETVW 77
Query: 659 RIS---GYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
+ G QN D TV++ + F L + E V V Q + G++
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPRE--EMVERVDQALRQVGME 131
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D L P + LS Q++R+ IA L P II +DE TS LD R V+ V+ + E
Sbjct: 132 DFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189
Query: 775 GR-TVVCTIHQPSIDIFE-AFDDLVLMKNGGRII 806
TV+ H D+ E A D V++ N G I+
Sbjct: 190 KGITVLSITH----DLDEAAQADRVIVMNKGEIL 219
|
Length = 279 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 46/229 (20%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKV----- 653
++D + G + +MG+SG+GK+TL+ R +IE G+I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 654 ------QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
+ + + Q+ P+ TV E++ F ++ + + + +A E L+
Sbjct: 99 ELRELRRKKISMVF----QSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALEL 151
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAT 763
+ L+G D N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 152 VGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206
Query: 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
++ + +T+V H D+ EA D + +MK G I+ G
Sbjct: 207 LLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 44/215 (20%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
++L + T + G + ALMG +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 660 ISGYCEQNDIHSPNITVEESI---VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
DI ++ EE +F A+ E+ G+K++
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-------------------PPEIPGVKNA 95
Query: 717 LVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
L VN G S ++KR I L+ P + +DEP SGLD A V + + E G
Sbjct: 96 DF-LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
++V+ H + + D + ++ + GRI+ G
Sbjct: 155 KSVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 18/205 (8%)
Query: 615 TALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRI---GGYPKVQHTFARISGYCEQNDI 669
TA+ G SG+GKTTL+ +++G R G I + R R GY Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729
P+++V ++ + ++ ++ + IEL GI L LPG LS
Sbjct: 86 LFPHLSVRGNLRYGMK-------RARPSERRISFE-RVIELLGIGHLLGRLPG--RLSGG 135
Query: 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSID 788
+++R+ I L+++P ++ MDEP + LD ++ ++ + E G ++ H +
Sbjct: 136 EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-E 194
Query: 789 IFEAFDDLVLMKNGGRIIYFGPLGQ 813
+ D +V++++ GR+ GP+ +
Sbjct: 195 VLRLADRVVVLED-GRVAAAGPIAE 218
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGG---Y-PKVQH- 655
D+ P +TA +G SG GK+T++ L+ G +EG++ + G Y P V
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIK 714
R G Q P +++ +++V A L+L+ + K E V + L+ L + +K
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
D L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 45/208 (21%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 651
L DIT + +TAL+G SG GK+TL+ D++ G + I GDI G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENI 75
Query: 652 ------------KVQHTFARISGYCEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKT 696
K+ F R PN ++ E++ + R+ + + KT
Sbjct: 76 MDSGADVVALRRKIGMVFQR------------PNPFPKSIYENVAYGP--RIHGEKNKKT 121
Query: 697 KAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755
V + L+ L D +KD L LS Q++RL IA L NP +I MDEP S
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179
Query: 756 LDARAAATVMRAVKNVVETGRTVVCTIH 783
LD A A + ++++ + TV+ H
Sbjct: 180 LDPIATAKIEDLIEDLKKE-YTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-- 654
TRL LS G R G + L+G +GAGK+TL+ ++G +G G I+ G P
Sbjct: 13 TRLGPLS---GEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWS 66
Query: 655 -HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DG 712
AR Y Q +P W L+ KT+ E +N+V + L D
Sbjct: 67 ATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK 118
Query: 713 IKDSLVGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAATVMRA 767
+ S L G QR RL + + ANP+ ++ +DEP + LD + + R
Sbjct: 119 LGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRL 174
Query: 768 VKNVVETGRTVVCTIH 783
+ + + G +V + H
Sbjct: 175 LSALCQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 51/237 (21%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
++L + +TALMG SG+GK+TL+ V + +IE YP+ AR
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR-----LIEL------YPE-----AR 60
Query: 660 ISG--YCEQNDIHS--------------------PNITVEESIVFSAWLRLSTQIDSKTK 697
+SG Y + DI PN+++ E++ L+L+ + SK +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKE 118
Query: 698 -AEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755
E V L+ +L D +KD L G LS Q++RL IA L P ++ DEPT+
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA--FDDLVLMKNGGRIIYFGP 810
LD A + ++ ++ T+V H P +A D V G+I+ +GP
Sbjct: 177 LDPENTAKI-ESLFLELKKDMTIVLVTHFPQ----QAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--- 654
++Q L ++ G + AL+G +GAGKTTL+ + G G I G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72
Query: 655 HTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDG 712
H AR+ Y + P +TVEE+++ L + D + + + EV + L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
++ G LS +++ L IA L++ P ++ +DEP+ GL + + A+K +
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 773 ETGRTVVCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFGP 810
+ G + + Q + A + D + GRI+ G
Sbjct: 184 KEGGMTILLVEQ---NARFALEIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 62/191 (32%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 592 NGFNQTRLQL-------LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKT 637
N FN L L L I +TAL+G SG GK+TL+ D++ G K
Sbjct: 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK- 60
Query: 638 GGIIEGDIRIGG---YPKVQHTFARIS-GYCEQNDIHSPN---ITVEESIVFSAWLRLST 690
I G + + G Y + RI G Q PN +++ E++ + LR
Sbjct: 61 ---ITGKLTMDGEDIYGNIDVADLRIKVGMVFQK----PNPFPMSIYENVAYG--LRAQG 111
Query: 691 QIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749
D K E V L+ L D +KD L GLS Q++RL IA + P +I M
Sbjct: 112 IKDKKVLDEVVERSLRGAALWDEVKDRLKSH--AFGLSGGQQQRLCIARTIAMEPDVILM 169
Query: 750 DEPTSGLDARA 760
DEPTS LD A
Sbjct: 170 DEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658
++L ++ + G + A++G SG+GK+TL+ +L G G++ G + +
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSN 75
Query: 659 RIS-------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
+ G+ Q P+ T E++ + + ++K +A E+L+ + L
Sbjct: 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL- 131
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
+ + P LS +R+R+ IA LV PS++ DEPT LD A + + +
Sbjct: 132 --EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 772 -VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803
E + + H ++ + D ++ MK+G
Sbjct: 188 NRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVL--------SGRKTGGII--EGDIRIGGYP 651
+ D++ F +TA++G SG GK+T++ + S R TG I+ + DI G
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL- 710
V + R G Q P +++ ++++ A +L+ +++ E V L+ + L
Sbjct: 80 PV--SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
D +KD L LS Q++RL IA + P +I MDEP S LD + + ++
Sbjct: 136 DEVKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193
Query: 771 VVETGRTVVCT 781
+ E ++ T
Sbjct: 194 LKEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 658
L +++ + G + +G +GAGK+T M +++G G ++ + G +Q+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEV 73
Query: 659 -RISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
R GY + H+P ++ V E + F A + + + + V E+++
Sbjct: 74 QRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIE-------- 119
Query: 715 DSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
LVGL + LS R+R+ +A L+ +P ++ +DEPT+GLD + +K
Sbjct: 120 --LVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
N+ + +T++ + H + EA D V++ N G+I+
Sbjct: 178 NIGKD-KTIILSTH--IMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 27/231 (11%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652
+ +L ++ + G AL+G +G GK+TL+ +L+ + +G+I + G P
Sbjct: 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGEILLNGQP- 403
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESI-VFSAWLR--LSTQIDSKTKAEFVNEVLQTIE 709
I+ Y E + V + + +FSA LR L + + + EVLQ +
Sbjct: 404 -------IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI-EVLQQVG 454
Query: 710 LDGIKDSLVGLP---GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L+ + + GL G G LS +++RL IA L+ + ++ +DEPT GLDA +
Sbjct: 455 LEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHS 815
+ + + +TV+ H+ + E FD + +M N G+II G H
Sbjct: 515 LELLAEHAQ-NKTVLMITHR--LTGLEQFDRICVMDN-GQII---EQGTHQ 558
|
Length = 574 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 33/182 (18%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LL +++ T PG L+G +GAGK+TL+ +L+G G++ +V
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKGLRV------- 68
Query: 661 SGYCEQNDIHSPNITVEESIV--FSAWLRLSTQID--SKTKAEFVNEVLQTI-----ELD 711
GY Q P TV + ++ F L +++ A+ +E+L + ELD
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 712 G------IKDSLVGLPGVNGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLDA 758
G +++L+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 759 RA 760
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 626 TTLMDVLSG--RKTGGIIEGD-IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVF 682
+TL+ +++G + T G I D G + RI G Q+ P +TV E++ F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRI-GVVFQDPQLFPELTVRENLFF 59
Query: 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742
E + +E G+ D L P V LS Q++R+ IA L+
Sbjct: 60 GL-----------RDKEADARAEEALERVGLPDFLDREP-VGTLSGGQKQRVAIARALLK 107
Query: 743 NPSIIFMDEPTS 754
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 16/211 (7%)
Query: 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GGIIEGDIRIGGYPKV------- 653
D++ PG + ++G SG+GK+TL+ L+GR G +R G ++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 654 QHTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
+ R G+ QN + V L + L+ +E+D
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID- 138
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN-V 771
+ LP S ++RL IA LV P ++FMDEPT GLD A ++ ++ V
Sbjct: 139 -PTRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ G V+ H + A L++M+ G
Sbjct: 196 RDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 42/212 (19%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARIS-------GYCEQ 666
+MG+SG+GK+TL+ R +IE G + I G + + Q
Sbjct: 55 IMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 667 NDIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725
+ P+ TV E++ F L Q + + E E L+ + L+G + +
Sbjct: 110 SFALLPHRTVLENVAFG----LEVQGVPRAEREERAAEALELVGLEGWEHKYP-----DE 160
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-----ETGRTVVC 780
LS ++R+ +A L +P I+ MDE S LD + R +++ + E +T+V
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALD----PLIRREMQDELLRLQAELQKTIVF 216
Query: 781 TIHQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
H D+ EA D + +MK+ GR++ G
Sbjct: 217 ITH----DLDEALRLGDRIAIMKD-GRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L D + T G + AL+GV+G+GK+TL L G + G I I G P Q +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLV 80
Query: 662 GYCEQN---DIHSPNITVEESIVFS-----AWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
Y Q+ D P + VE+ ++ WLR + + D + V L +++
Sbjct: 81 AYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRAKKRDR----QIVTAALARVDMVEF 135
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
+ +G LS Q+KR+ +A + +I +DEP +G+D + A ++ ++ + +
Sbjct: 136 RHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
G+T++ + H + E D V++K G ++ GP
Sbjct: 191 EGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 69/302 (22%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 486 ISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDA 545
++IG L+ F +L +FL+P LQ+ + D +R D
Sbjct: 407 LTIGMLVAFQ-------SLMSSFLEPVNNLVGFGG-----TLQELE----GDLNR--LDD 448
Query: 546 PLKAATGPKRGERPLAHRKMILPFEPLT--VTFEDLRYYVDIPSAMRKNGFNQTRLQLLS 603
L+ P E A P L+ V ++ + G++ L+
Sbjct: 449 VLRNPVDPL-LEEEEAPAAGSEPSPRLSGYVELRNITF-----------GYSPLEPPLIE 496
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARIS 661
+ + T +PG AL+G SG+GK+T+ +++G + G +I G P+ + ++
Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLA 552
Query: 662 G---YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+Q DI TV +++ + W T + ++++ + I D +
Sbjct: 553 NSVAMVDQ-DIFLFEGTVRDNL--TLW--------DPTIPDA--DLVRACKDAAIHDVIT 599
Query: 719 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
PG G E QR+RL IA LV NPSI+ +DE TS LD +
Sbjct: 600 SRPG--GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657
Query: 768 VK 769
++
Sbjct: 658 LR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 37/225 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L D+ T G TA +G +G+GK+T+M +L+G +G +R+ I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 662 GYCEQNDIHSPNITV------EESIVFSAWLRLSTQID-----------SKTKAEFVNEV 704
+ DI V ES +F T + S+ +AE +
Sbjct: 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-----ETVLKDVAFGPQNFGVSQEEAEAL--A 125
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
+ + L GI +SL LS Q +R+ IA L P I+ +DEPT+GLD + +
Sbjct: 126 REKLALVGISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
M K + ++G T+V H +D + D V + G+++ G
Sbjct: 185 MTLFKKLHQSGMTIVLVTHL--MDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 616 ALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGG----YPKVQHTFARIS-GYCEQN 667
ALMG SG GK+TL+ + L +EG++R+ G P V R G Q
Sbjct: 34 ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93
Query: 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIEL-DGIKDSLVGLPGVNG 725
P++T+ +++ ++L+ + SK + E V L+ L D +KD L P
Sbjct: 94 PNPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS--N 149
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS QR+RL IA L P I+ MDEPT+ +D A + + ++ T+V H P
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVTHSP 208
Query: 786 S 786
+
Sbjct: 209 A 209
|
Length = 253 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 30/243 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTF 657
LL ++ TF G +T L+G +G+GK+TL+ +L GR EG+I + P F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPP-SEGEILLDAQPLESWSSKAF 83
Query: 658 ARISGYCEQNDIHSPNITVEESIVF------SAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
AR Y Q + +TV E + A R A +V + I L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFG--------AADREKVEEAISLV 135
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
G+K L V+ LS +R+R IA+ + + + +DEPTS LD V+ V +
Sbjct: 136 GLKPLAHRL--VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 772 V-ETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIP- 826
E G TV+ +H DI A D LV ++ G I P + +E IP
Sbjct: 194 SQERGLTVIAVLH----DINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPM 249
Query: 827 GVL 829
G+L
Sbjct: 250 GIL 252
|
Length = 265 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 35/225 (15%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQH---- 655
D++ PG + ++G SG+GKTTL++ LS R G + +R G +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 656 ---TFARIS-GYCEQN--DIHSPNIT----VEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
R G+ Q+ D ++ + E ++ R I + T +++ V
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDIRA-TAGDWLERV- 138
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
I+ I D LP S ++RL IA LV +P ++FMDEPT GLD A ++
Sbjct: 139 -EIDAARIDD----LPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 766 RAVKN-VVETGRTVVCTIHQPSIDIFEA---FDDLVLMKNGGRII 806
++ V E G VV H D+ A L++MK GR++
Sbjct: 192 DLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMK-QGRVV 231
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 6e-10
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPK------ 652
L DI + G TAL+G +G+GK+TL+ L+G + T G + GDI + K
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
V+ + + E EE+++ K KAE + + +E+ G
Sbjct: 82 VRKKVGVVFQFPESQ-------LFEETVLKDVAFGPQNFGIPKEKAEKI--AAEKLEMVG 132
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+ D LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +++
Sbjct: 133 LADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
++G+TVV H +D + D V + G II G
Sbjct: 192 QSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 6e-10
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 612 GILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQ--HTFARISGYCE 665
G + +MG+SG+GK+T + +L+ T G I+G+ I V+ + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE-NIMKQSPVELREVRRKKIGMVF 77
Query: 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725
Q P++T+ ++ L + + E E+L+ + L+ + P +
Sbjct: 78 QQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHRY---P--DE 129
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQ 784
LS ++R+ +A L A P I+ MDE S LD ++ +K + T +T+V H
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH- 188
Query: 785 PSIDIFEAF---DDLVLMKNG 802
D+ EA D +V+MK G
Sbjct: 189 ---DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGY-- 650
Q L DI+ F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDGENI 75
Query: 651 --PKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
P V R G Q P ++ E++ + LR++ D AE V L+
Sbjct: 76 YDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRH 132
Query: 708 IEL-DGIKDSL--VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L D +KD L L GLS Q++RL IA L P ++ MDEP S LD A +
Sbjct: 133 AALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 615 TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---YPKVQHTFARISGYCEQN-DIH 670
TAL+G +GAGK+TL+ L+G G +++ G + + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730
+ TV + + F ++ +D V E L+ + + +D LS Q
Sbjct: 92 VFSSTVWDDVAFGP---VNMGLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQ 143
Query: 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIF 790
+KR+ IA L +P +I +DEP + LD R T+M + + G+TV+ H +D+
Sbjct: 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVDLA 201
Query: 791 EAFDDLVLMKNGGRIIYFG 809
+ D V++ GR++ G
Sbjct: 202 AEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 40/180 (22%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 652
Q L I +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQ-- 70
Query: 653 VQHTFARISGYCEQNDI-----------HSPN---ITVEESIVFSAWLRLSTQIDSKTKA 698
Y D+ PN +++ +++ + R D K
Sbjct: 71 --------DIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP--RTHGIKDKKKLD 120
Query: 699 EFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
E V + L+ L D +KD L GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 121 EIVEKSLKGAALWDEVKDRLK--KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 18/219 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF---- 657
L + T + G + A+MG +G+GK+TL ++G + + G I G Q
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QDLLELEP 71
Query: 658 ---ARISGYCE-QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIELDG 712
AR + Q P ++ E + + R S + + +F+ + + L G
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 713 IKDSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
+ + + VN G S ++KR I + P + +DE SGLD A V + +
Sbjct: 132 MDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190
Query: 772 VETGRTVVCTIHQPSIDIFEAFD-DLVLMKNGGRIIYFG 809
E R+ + H + D V + GRI+ G
Sbjct: 191 REPDRSFLIITHYQR--LLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGG-- 649
L I+ + A +G SG GK+T + D++ + +EG+IRI G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 650 -YPKVQHT--FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
Y K + G Q P ++ E++ + LR++ D+ + V E L+
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 707 TIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L D +KD L LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 652
FNQ Q L + G + AL+G SG+GK+TL+ LSG TG I + G
Sbjct: 14 FNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR-T 70
Query: 653 VQHTFARISGYCEQNDIHSPNI----------TVEESIVFSA------W---LRLSTQID 693
VQ R++ ++ ++ I +V E+++ A W T+
Sbjct: 71 VQRE-GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129
Query: 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
+ LQ + G+ V+ LS Q++R+ IA L+ +I DEP
Sbjct: 130 KQ-------RALQALTRVGM--VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180
Query: 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQ 784
+ LD +A VM ++++ + G TVV T+HQ
Sbjct: 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 30/249 (12%)
Query: 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
+++ FE++ Y + M K G L +I+ G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 632 LSG--RKTGGIIEGDIRIGGYPKVQHTFA--------RISGYCEQNDIHSPNITVEESIV 681
+ + + G I I GY T ++S + + TV + +
Sbjct: 53 FNALLKPSSGTIT----IAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV 741
F ++ ++K KA L+ ++ G+ + L+ LS Q +R+ IA +
Sbjct: 109 FGPKNFGFSEDEAKEKA------LKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMA 161
Query: 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801
P I+ +DEP +GLD +M+ K+ + G TV+ H D+ E DD++++++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 802 GGRIIYFGP 810
G I + P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 29/212 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L D++ G L+G +GAGK+TL+ +L+G G + R+ + F
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF-- 95
Query: 660 ISGYCEQNDIHSPNITVEESIVFSA-WLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSL 717
+P +T E+I + L LS +ID K ++E+ IE + D +
Sbjct: 96 -----------NPELTGRENIYLNGRLLGLSRKEIDEK-----IDEI---IEFSELGDFI 136
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
LP V S+ + RL A+ P I+ +DE + DA R ++ +++ G+T
Sbjct: 137 D-LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V+ H PS I D ++++ G+I + G
Sbjct: 195 VILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 40/185 (21%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L+ ++ F P +TAL+G SG+GK+TL+ ++ + + P+V T + +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSIN--RMNDLN---------PEVTITGSIV- 68
Query: 662 GYCEQNDIHSPNI-TVE--------------------ESIVFSAWLRLSTQIDSKTKAEF 700
Y N I+SP TV+ E++V+ LRL D + E
Sbjct: 69 -YNGHN-IYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIKDKQVLDEA 124
Query: 701 VNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
V + L+ + D +KD L GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 125 VEKSLKGASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 760 AAATV 764
+A +
Sbjct: 183 SAGKI 187
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-09
Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 18/213 (8%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS---GYC 664
TF +TA +G +GAGKTT + +L+G G + +GG ++ + G C
Sbjct: 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG-KDIETNLDAVRQSLGMC 1008
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724
Q++I ++TV E I+F A L+ + +++ + E +L+ L ++
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME---AMLEDTGLHHKRNE-----EAQ 1060
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
LS +++L++A+ V + ++ +DEPTSG+D + ++ + +GRT++ + H
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHH 1119
Query: 785 PSIDIFEAFDDLVLMKNGGRIIYFG-PLGQHSC 816
+D + D + + + GR+ G PL +C
Sbjct: 1120 --MDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652
G + L +L+ + + G AL+G SG+GK+TL+ +L+G G G++ + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74
Query: 653 VQ-------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
Q A+ G+ Q+ + P + E++ A LR + S+ A
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA------K 128
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
+E G+ L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIEGDIRIGGYPKVQ-- 654
+++L I+ G + A++G SG+GK+TLM++L + T G R+ G
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY----RVAGQDVATLD 76
Query: 655 -HTFARIS----GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
A++ G+ Q ++T +++ A + ++ K + E+LQ +
Sbjct: 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRL- 132
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
G++D + P + LS Q++R++IA L+ +I DEPT LD+ + VM +
Sbjct: 133 --GLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILH 188
Query: 770 NVVETGRTVVCTIHQPSI 787
+ + G TV+ H P +
Sbjct: 189 QLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 652
N+ + +L +T T PG + AL+G SG+GK+T+ +L + TGG + + G P
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPL 545
Query: 653 VQHTFARISGYCEQNDIHSPNITV-EESIVFSAWLR--LSTQIDSKTKAEFVNEVLQTIE 709
VQ+ + + +H V +E ++FS +R ++ + E +
Sbjct: 546 VQY---------DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596
Query: 710 LDGIK------DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
D I D+ VG G + LS Q++R+ IA LV P ++ +DE TS LDA
Sbjct: 597 HDFIMEFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 764 VMRAVKNVVETGRTVVCTIHQPSI 787
+ + RTV+ H+ S
Sbjct: 656 LQESRS---RASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 32/183 (17%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGY-- 650
Q L DI+ +TA +G SG GK+TL+ D++ + IEG+IR+ G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 651 --PKVQ-HTFARISGYCEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
KV R G Q PN ++ E++V+ LRL + + E V
Sbjct: 95 YDKKVDVAELRRRVGMVFQR----PNPFPKSIYENVVYG--LRLQGINNRRVLDEAVERS 148
Query: 705 LQTIEL-DGIKDSL--VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
L+ L D +KD L GLS Q++RL IA + P ++ +DEPTS LD +
Sbjct: 149 LRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204
Query: 762 ATV 764
+
Sbjct: 205 LKI 207
|
Length = 272 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-09
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 31/209 (14%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSG---RKTGGII-EGDIRIGGYPKVQHTFARISGYCEQ 666
PG + AL+G +GAGK+T+M VL+G R G I+ G PK A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE-AGIG----- 82
Query: 667 NDIHS-----PNITVEESIVF-----SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
IH P +T+ E+I + + R ID K +++L + L D
Sbjct: 83 -IIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSDK 137
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
LVG LS +++ + IA L +I MDEPT L ++ R ++ + GR
Sbjct: 138 LVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR 192
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
+V H+ +IFE DD+ + ++G I
Sbjct: 193 GIVYISHRLK-EIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 58/245 (23%)
Query: 602 LSDITGTFRPGIL---TALMGVS---------------GAGKTTLMDVLSGR--KTGGII 641
LS+ T TF G AL G+S GAGK+TL++ ++G T G I
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
Query: 642 E-GDIRIGGYPKVQH--TFARI-----SGYCEQNDIHSPNITVEESIVFSAWLR-----L 688
+ + + AR+ +G P +T+EE++ A R L
Sbjct: 64 LIDGVDVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGL 115
Query: 689 STQIDSKTKAEFVNEVLQTIELDGIKDSL---VGLPGVNGLSTEQRKRLTIAVELVANPS 745
S+ ++ + ++ F L + L G+++ L +GL LS QR+ L++ + + P
Sbjct: 116 SSALNERRRSSFRER-LARLGL-GLENRLSDRIGL-----LSGGQRQALSLLMATLHPPK 168
Query: 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGR-TVVCTIH--QPSIDIFEAFDDLVLMKNG 802
I+ +DE T+ LD + A VM +VE + T + H + ++D + + ++M +
Sbjct: 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----YGNRLIMLHS 224
Query: 803 GRIIY 807
G+I+
Sbjct: 225 GKIVL 229
|
Length = 263 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-09
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 57/253 (22%)
Query: 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 632
V F+D+ + ++ +R Q + D++ +PG A++G +GAGK+TL+++L
Sbjct: 334 AVEFDDVSF-----------SYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 633 -------SGRKTGGIIEG-DIRIGGYPKVQHT----------FAR-ISGYCEQNDIHSPN 673
SGR I+G DIR ++ F R I + + P+
Sbjct: 382 QRVFDPQSGRIL---IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE---DNIRVGRPD 435
Query: 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733
T EE +R + + +F+ + DG D++VG G LS +R+R
Sbjct: 436 ATDEE-------MRAAAERAQAH--DFIER-----KPDGY-DTVVGERG-RQLSGGERQR 479
Query: 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793
L IA L+ +P I+ +DE TS LD A V A+ +++ GRT H+ S + A
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLST-VRNA- 536
Query: 794 DDLVLMKNGGRII 806
D +L+ + GR++
Sbjct: 537 -DRILVFDNGRVV 548
|
Length = 588 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 35/238 (14%)
Query: 591 KNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRI 647
K G L DI+ G ++G +GAGK+TL+ +++ GI + G +++
Sbjct: 32 KGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKV 86
Query: 648 GGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLST-QIDSKTKAEFVNEVL 705
G +++ E P +T E+I L L+ +ID K V+E++
Sbjct: 87 TG---------KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK-----VDEII 132
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+ EL D P V S+ RL +V P I+ +DE + DA +
Sbjct: 133 EFAELGDFID----QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFE 823
+ +VE +T+V H I + D + +++ G+I G + VI +E
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPEE----VIPAYE 239
|
Length = 249 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-08
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 22/215 (10%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 656
L LS+I G LT ++G G GK++L+ + G + G + + P + T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 657 FARISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEV--LQ-TIEL 710
+R + Y P N TVEE+I F + +K + + V + LQ I+L
Sbjct: 74 RSR-NRYSVAYAAQKPWLLNATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDL 125
Query: 711 DGIKD-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA-- 767
D + +G G+N LS QR+R+ +A L N +I+F+D+P S LD + +M+
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+K + + RT+V H+ + D ++ MK+G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 589 MRKNGFNQTRL-------QLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTG 638
M +N N L ++L ++ G + +++G SG+GK+T + + L G
Sbjct: 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 60
Query: 639 GII------------EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWL 686
I+ +G +++ +++ R++ + ++ S ++TV E++ +
Sbjct: 61 SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENV-----M 114
Query: 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 746
Q+ +K E ++ + GI + G V+ LS Q++R++IA L P +
Sbjct: 115 EAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEV 173
Query: 747 IFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
+ DEPTS LD V+R ++ + E G+T+V H+
Sbjct: 174 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 18/205 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L + T + G +L+G SG GK+TL++++SG G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPGPDRMV 58
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
+ QN P +TV E+I A R+ + + V E I L G+ ++ P
Sbjct: 59 VF--QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEE---HIALVGLTEAADKRP 112
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR-TVVC 780
G LS ++R+ IA L P ++ +DEP LDA + + + E R TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 781 TIHQPSIDIFEAF---DDLVLMKNG 802
H D+ EA D +V++ NG
Sbjct: 171 VTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRIGGYP----KV 653
L + T G AL+G SGAGKT+L++ L G + +G ++I G
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ +S + QN P+ T+ ++++ Q+ + +V+E L + G+
Sbjct: 419 ESWRKHLS-WVGQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP-QGL 475
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
D+ +G GLS Q +RL +A L+ ++ +DEPT+ LDA + VM+A+
Sbjct: 476 -DTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR 533
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+T + HQ ++ +D + +M++G
Sbjct: 534 -RQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY--- 650
F T Q+L +I G + ++G SG+GK+TL+ ++ + I GD+ + G
Sbjct: 11 FGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66
Query: 651 -PKVQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
PKV + +G Q P++T E+++F ++ +K E + + +
Sbjct: 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-----LRVRGASKEEAEKQARELL 121
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
G+ + P + LS Q++R+ IA L P ++ DEPTS LD V++ +
Sbjct: 122 AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179
Query: 769 KNVVETGRTVVCTIHQ 784
+++ E G T+V H+
Sbjct: 180 QDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 17/217 (7%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQ 654
+L++++ + + G AL+G SG GK+TL +L G + G + + + Q
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83
Query: 655 H-TFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
F R Q+ I + P TV E I LR +D + +E+L+ ++LD
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 712 GIKDSLVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
DS++ P LS Q +R+ +A L P ++ +DE S LD A V+R +K
Sbjct: 142 ---DSVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196
Query: 771 V-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
+ + G + H + + E F V++ + G+I+
Sbjct: 197 LQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 59/228 (25%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 553 PKRGERPLA-HRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLL---SDITGT 608
P PL ++L E L V F K GF + + L I+ T
Sbjct: 262 PSGDPPPLPEDAPVLLEVEDLRVWF------------PIKGGFLRRTVDHLRAVDGISLT 309
Query: 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRIGGYPKVQHTFARISGYCEQ 666
R G L+G SG+GK+TL G +I +G+IR G + + +
Sbjct: 310 LRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--R 362
Query: 667 NDIH----------SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
+ SP +TV + I+ ++ + + + V E L+ + LD +
Sbjct: 363 RRMQVVFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP--AT 419
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
P + S QR+R+ IA L+ P +I +DEPTS LD A V
Sbjct: 420 RNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV 465
|
Length = 534 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 670
G AL+G SG+GK+T++ +L + I EG I++ G ++ H R ++ H
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEG-EQLYHMPGRNGPLVPADEKH 81
Query: 671 SPNITVEESIVFSAW--------LRLSTQIDSKTK----AEFVNEVLQTIELDGIKDSLV 718
+ + +VF ++ L T+ AE ++ +++ G+ D
Sbjct: 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD 141
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRT 777
+P LS Q++R+ IA L P ++ DE TS LD V+ ++ + E T
Sbjct: 142 HMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLT 199
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
++ H+ + F D V + GRI+ G +
Sbjct: 200 MLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA-- 658
+L +++ + G + A++G SG+GK+TL+ +L G T GD+ G P + + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 659 -----RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ G+ Q P+ T E++ + I K AE + L+ + G+
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVA------MPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
+ P + LS +R+R+ IA LV NP ++ DEPT LDAR A ++
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
Length = 233 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPK---V 653
Q + D+ F G A++G +G+GK+TL+ ++ + T G + DI I K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ RI + + TVE I+F + +++ + + +L ++L
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGP---KNFKMNLDEVKNYAHRLL--MDLGFS 135
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-V 772
+D + P +S Q +++ I L NP II +DEPT+GLD ++ VMR +K++
Sbjct: 136 RDVMSQSP--FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP--LGQHSCKVIEYFECIPGVLK 830
+ +T++ H + ++ D++++MK G + P L + K+ ++ +P +++
Sbjct: 194 DENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQ 252
Query: 831 ----IKDNYN 836
+ Y
Sbjct: 253 LQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQN 667
G TA++G +G GK+TL+ LS T G + + G +QH AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDG-EHIQHYASKEVARRIGLLAQN 89
Query: 668 DIHSPNITVEESI---------VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ITV+E + +F+ W K E V + +Q GI +
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRW--------RKEDEEAVTKAMQAT---GITH--L 136
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV--LSGRKTGG--IIEG-DIRIGGYPK 652
+Q L++++ G + ++G SGAGK+TL+ L R T G I++G D+ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
+ +I + ++ S TV ++ L + + + K K V E+L + L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEIKRK---VTELLALVGLGD 132
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
DS P + LS Q++R+ IA L +NP ++ DE TS LD +++ +K +
Sbjct: 133 KHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187
Query: 773 ET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
G T++ H+ +D+ + D V + + G +I G + +
Sbjct: 188 RRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVSE 227
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 614 LTALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGGY----PKVQHTFARIS-GYCE 665
+TA++G SG GKTTL+ + ++ G +EG I G P++ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVN 724
Q P +++ +++ F R+ V E L+ L D +K L PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
LS Q++RL IA L P +I +DEPTS LD A + + ++ + E T+V H
Sbjct: 147 -LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHN 204
Query: 785 PSIDIFEAFDDLVLMKNGGRIIYFGP 810
I D + G +I +GP
Sbjct: 205 IGQAI--RIADYIAFMYRGELIEYGP 228
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG---YPK- 652
Q L+DI +TAL+G SG GK+T + L+ + IEG++ + G Y K
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 653 --VQHTFARISGYCEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
V R+ G Q PN +++ +++ + R+ D K + V L+
Sbjct: 78 VDVVELRKRV-GMVFQK----PNPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKK 130
Query: 708 IEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
L D +KD L LS Q++RL IA + P +I MDEPTS LD
Sbjct: 131 AALWDEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGG---YPK 652
Q L D++ +TA++G SG GK+T + + ++ +EG++ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 653 VQHTFA--RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
A R G Q PN +SI + L Q E V E L+ L
Sbjct: 112 DVDPVALRRRIGMVFQK----PN-PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAAL 166
Query: 711 -DGIKDSL--VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
D +KD L GL LS Q++RL IA + +P +I MDEP S LD A + +
Sbjct: 167 WDEVKDQLDSSGL----DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 768 VKNVVETGRTVVCTIH--QPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ + E TVV H Q + I D + GG ++ F
Sbjct: 223 IEELAEE-YTVVIVTHNMQQAARI---SDKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 59/214 (27%), Positives = 83/214 (38%), Gaps = 64/214 (29%)
Query: 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633
VTF RY D P +L D++ PG A++G SG+GK+TL+ +L
Sbjct: 457 VTF---RYRPDGP-------------LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL 500
Query: 634 GRKTGGIIEGDIRIGGYP---------------KVQHTFARI-SGYCEQNDIHSPNITVE 677
G +T G + G +Q+ R+ SG +N +T++
Sbjct: 501 GFETPES--GSVFYDGQDLAGLDVQAVRRQLGVVLQN--GRLMSGSIFENIAGGAPLTLD 556
Query: 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGL-----PGVNGLSTEQR 731
E AW E + L I+ +G+ G LS QR
Sbjct: 557 E-----AW-----------------EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594
Query: 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+RL IA LV P I+ DE TS LD R A V
Sbjct: 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIEGDIRIGG 649
++ ++L DI+ F G + ++G SGAGK+TL+ + L G I+ + I
Sbjct: 10 SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKT 69
Query: 650 YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
+ R G Q H TV+++I + L+ +D E+ L +
Sbjct: 70 IDVID--LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKGEKNVD----VEYY---LSIVG 119
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
L+ K+ V LS + +R++IA L NP ++ +DEPTS LD + + +
Sbjct: 120 LN--KEYAT--RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 770 NVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ TV+ H +++ + D N G ++ +
Sbjct: 176 KLKNKMNLTVIWITH--NMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 57/202 (28%)
Query: 564 KMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGA 623
K++L FE ++ ++ R LL D++ G A++G +GA
Sbjct: 319 KLVLEFENVSKGYDGGRL-------------------LLKDLSFRIDRGDRIAIVGPNGA 359
Query: 624 GKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFS 683
GK+TL+ +L+G + G + G +++G V+ GY +Q+
Sbjct: 360 GKSTLLKLLAG-ELGP-LSGTVKVG--ETVK------IGYFDQH--------------RD 395
Query: 684 AWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL--VGLPG------VNGLSTEQRKRLT 735
KT E ++E + ++ L G G V LS ++ RL
Sbjct: 396 ELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLL 449
Query: 736 IAVELVANPSIIFMDEPTSGLD 757
+A L+ P+++ +DEPT+ LD
Sbjct: 450 LAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFARI 660
D++ T G + AL+G SG GK+TL+ +L+G + G I+ + + P Q R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RP 92
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
Q+ P++TVE++I F + D KAE + V + + L +++
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFG------LKQDKLPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVV 779
P + LS QR+R+ +A L P ++ +DEP LD + + V +++E G T V
Sbjct: 147 P--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRI 805
H D EA M GRI
Sbjct: 205 MVTH----DQEEA------MTMAGRI 220
|
Length = 377 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 34/251 (13%)
Query: 594 FNQTRLQLLSDITGTFR-------PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 646
F Q SD + T + G T+++G +G+GK+T+ ++ G + G+I
Sbjct: 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIF 67
Query: 647 IGGYPKVQHTFARIS---GYCEQNDIHSPNITVEESIV-FSAWLRLSTQ-IDSKTKAEFV 701
F ++ G QN P+ SIV + L + V
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQN----PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
+E L+ +++ D N LS Q++R+ IA L NPS+I +DE TS LD A
Sbjct: 124 SEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD-DLVLMKNGGRIIYFGPLGQHSCKVIE 820
++ V+ V + +I D+ EA + D V++ N G + G E
Sbjct: 179 QNLLDLVRKVKSEHNITIISITH---DLSEAMEADHVIVMNKGTVYKEG-------TPTE 228
Query: 821 YFECIPGVLKI 831
F+ + +I
Sbjct: 229 IFDHAEELTRI 239
|
Length = 269 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGI-IEG-DIRIGGYPKVQ 654
Q + D++ + G A++G +GAGKTTL+++L G I I+G DI ++
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
+ A + D N ++ E+I ++ KA ++ + +G
Sbjct: 409 KSIATVF-----QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK-RSNGY- 461
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D+LVG G N LS +R+RL IA ++ N I+ +DE TS LD A V A+ + +
Sbjct: 462 DTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI-DALRK 519
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
RT H+ S + A DLVL + GR+I G
Sbjct: 520 NRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 40/225 (17%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFA 658
L +I+ + +PG ++G +G+GK++L+ L ++E G I I G +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-----RLVELSSGSILIDGVD-----IS 69
Query: 659 RISGYCEQNDIHSPNITV--EESIVFSAWLRLSTQIDSKTKA--EFVNEVLQTIELDGIK 714
+I +D+ S I++ ++ ++FS +R + +D + E E+ Q +E G+K
Sbjct: 70 KIG----LHDLRS-RISIIPQDPVLFSGTIRSN--LDPFGEYSDE---ELWQALERVGLK 119
Query: 715 DSLVGLPG-------VNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+ + LPG G LS QR+ L +A L+ I+ +DE T+ +D A +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ ++ TV+ H+ +D D ++++ GR++ F
Sbjct: 180 KTIREAF-KDCTVLTIAHR--LDTIIDSDRILVLDK-GRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTT----LMDVLSGRKTGGIIEGDIRIGGYPKVQHT 656
L+ D+ + + G + AL+G SG+GK+ ++ +L T G+I + G P + +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 657 F-ARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
R QN + P T+ + + LR ++ + +A + E L+ + L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALIL-EALEAVGLPDP 115
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
++ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ ++ + +
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 774 T-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811
G ++ H + + D++ +M + GRI+ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 21/216 (9%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGY 650
R +L+ I+ T G A++G SGAGK+T++ DV SG T I DIR
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT--IDGQDIRD--- 329
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
Q + R G Q D N T+ +I + + ++ + +A +++ +Q++
Sbjct: 330 -VTQQSLRRAIGIVPQ-DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP- 386
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
+G D+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + A++
Sbjct: 387 EGY-DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444
Query: 771 VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
V GRT + H+ S I +A D+++++ N GRI+
Sbjct: 445 VSA-GRTTLVIAHRLST-IIDA-DEIIVLDN-GRIV 476
|
Length = 497 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 58/226 (25%), Positives = 82/226 (36%), Gaps = 75/226 (33%)
Query: 565 MILPFEPLTVTFEDLR-YYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGA 623
+ P E + ++ +DL YY + + I F +TAL+G SG+
Sbjct: 12 ITFPEEEIALSTKDLHVYYGKK--------------EAIKGIDMQFEKNKITALIGPSGS 57
Query: 624 GKTTLMDVLS--------GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675
GK+T + L+ R TG I+ I DI+ I
Sbjct: 58 GKSTYLRSLNRMNDTIDIARVTGQILYRGI----------------------DINRKEIN 95
Query: 676 VEE---------------------SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGI 713
V E +I F+ L + D K E V L+ L D +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKKVLDEIVETSLKQAALWDQV 153
Query: 714 KDSL--VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
KD L L LS Q++RL IA + P I+ MDEP S LD
Sbjct: 154 KDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 6e-08
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS +R+ + IA L N ++ +DEPT+ L + + ++ + G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 786 SIDIFEAFDDLVLMKNG 802
++FE D + ++++G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 50/185 (27%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 652
+L ++ +TAL+G SG GK+T + D++ G + EG I + G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG--- 69
Query: 653 VQHTFARISGYCEQNDIHSPNITVEE-----SIVF--------------SAWLRLSTQID 693
DI+ P + V E +VF + LR+ + D
Sbjct: 70 --------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDD 115
Query: 694 SKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752
E V E L+ L D +KD L GLS Q++RL IA + +P +I MDEP
Sbjct: 116 EDFIEERVEESLKAAALWDEVKDKLD--KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 753 TSGLD 757
S LD
Sbjct: 174 CSALD 178
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-08
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 657
R Q+L+DI+ G + AL+G SG+GKTTL+ +++G + G IR G V
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHG-TDVSRLH 70
Query: 658 ARIS--GYCEQNDIHSPNITVEESIVFSAWLRL--------STQIDSKTKAEFVNEVLQT 707
AR G+ Q+ ++TV ++I F L + + I +K V ++L+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAK-----VTQLLEM 123
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
++L + D P LS Q++R+ +A L P I+ +DEP LDA+ + R
Sbjct: 124 VQLAHLADR---YPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW 178
Query: 768 VKNVVETGR-TVVCTIHQPSIDIFEAFDDLVLMKNG 802
++ + E + T V H + E D +V+M G
Sbjct: 179 LRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQG 213
|
Length = 353 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT 656
T + L++I +TAL+G SG GK+T + L+ + ++EG I+I G V +
Sbjct: 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN--RMNDLVEG-IKIEG--NVIYE 72
Query: 657 FARISGYCEQNDI-----------HSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVN 702
I Y DI +PN +++ ++I + ++ D K E V
Sbjct: 73 GKNI--YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGP--KIHGTKDKKKLDEIVE 128
Query: 703 EVLQTIEL-DGIKDSLVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
+ L+ L + +KD L N LS Q++RL IA L P++I MDEPTS LD
Sbjct: 129 QSLKKSALWNEVKDKL----NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184
Query: 760 AAATVMRAVKNVVETGRTVVCT 781
+ + + N+ E+ ++ T
Sbjct: 185 STGKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-08
Identities = 59/215 (27%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L +I G AL+G SG+GK+T+ ++L+ + I EG+I + G+ +T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 662 GYC---EQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSL 717
QN +H N T+ +I ++ + S QI+ + + + + ++ +G+ D++
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD-NGL-DTV 473
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--- 774
+G GV LS QR+R+ IA L+ + I+ +DE TS LD + RA++ ++
Sbjct: 474 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQK 528
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
RT + H+ S E D+++++++ G I+ G
Sbjct: 529 NRTSLVIAHRLS--TIEKADEILVVED-GEIVERG 560
|
Length = 582 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTL---MDVLSGRKTGGII------------EG 643
++L ++ G + +++G SG+GK+T ++ L G I +G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78
Query: 644 DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE 703
++ ++Q R+ G Q+ ++TV E+++ + +KAE +
Sbjct: 79 QLKPADKRQLQRLRTRL-GMVFQHFNLWSHMTVLENVI-----EAPVHVLGVSKAEAIER 132
Query: 704 VLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
+ + GI + P LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 133 AEKYLAKVGIAEKADAYPAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190
Query: 764 VMRAVKNVVETGRTVVCTIHQ 784
V++ ++++ E GRT+V H+
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-----Y 650
TRL LS R G + L+G +GAGK+TL+ ++G G G I+ G +
Sbjct: 9 STRLGPLS---AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAW 62
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW-LRLSTQIDSKTKAEFVNEVLQTIE 709
AR Y Q +P + VF L + ++ A +NEV + +
Sbjct: 63 S--AAELARHRAYLSQQQ--TPPFAMP---VFQYLTLHQPDKTRTEAVASALNEVAEALG 115
Query: 710 LDGIKDSLVGLPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAA 761
LD D L G VN LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 116 LD---DKL-GRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169
Query: 762 ATVMRAVKNVVETGRTVVCTIH 783
A + R + + + G VV + H
Sbjct: 170 AALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIRIGGYPKVQH-- 655
+L ++ F +T+LMG +G+GKTT + L+ + +G GD+ +GG +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 656 --TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DG 712
F R G Q P +++ ++++ A +R + K L + L D
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
+KD L P LS Q++ L +A L NP ++ +DEPTS LD + ++++
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
+ TV+ H ++ D + GR++ GP Q
Sbjct: 211 DR-LTVIIVTH--NLAQAARISDRAALFFDGRLVEEGPTEQ 248
|
Length = 276 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 614 LTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIRIGGYPKVQH-----TFARISGYCE 665
+TAL+G SG GK+T + L+ R I+G + + G Q + G
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVF 132
Query: 666 QNDIHSPN---ITVEESIVFSA----------WLRLSTQIDSKTKAEFVNEVLQTIEL-D 711
Q SPN ++ E+I + RL + D + E V L+ L D
Sbjct: 133 Q----SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188
Query: 712 GIKDSLVGLPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
+ D L N GLS Q++RL IA L +P +I MDEP S LD A + + ++
Sbjct: 189 EVNDRL----DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE 244
Query: 770 NVVETGRTVVCTIH 783
+ E TVV H
Sbjct: 245 ELAEE-YTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 14/192 (7%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----- 651
+ + D++ + R G + + G+ GAG+T L+ L G G EG++ I G P
Sbjct: 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRN 329
Query: 652 KVQHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLS--TQIDSKTKAEFVNEVLQT 707
Q A I+ E H P + V ++I S +ID+ + + + +Q
Sbjct: 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQR 389
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+++ K + LP + LS +++ +A L+ NP ++ +DEPT G+D A + +
Sbjct: 390 LKV---KTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445
Query: 768 VKNVVETGRTVV 779
+ + + G ++
Sbjct: 446 INQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 11/210 (5%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQHTF 657
L I RPG L G +GAGK+TLM +LSG G +G+I G P ++ T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI-DSKTKAEFVNEVLQTIELDGIKDS 716
Q P ++V E+I + L +L+ ++LD +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
V Q++ + IA L ++ +DEP+S L + ++ ++++ G
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG- 191
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
V C ++ +A D + + G+ +
Sbjct: 192 -VACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 56/254 (22%)
Query: 594 FNQ---TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIG 648
FN+ T L+ L +++ G A++G +G+GKTT ++ L+ G IE +
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK-- 69
Query: 649 GYPKVQHTFARISGYCEQNDIHSP------NI---------------------TVEESIV 681
K + E+ I I T+E+ I+
Sbjct: 70 -DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII 128
Query: 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP------GVNGLSTEQRKRLT 735
F +S + K E + IEL VGL LS Q++R+
Sbjct: 129 FGP---VSMGVS---KEEAKKRAAKYIEL-------VGLDESYLQRSPFELSGGQKRRVA 175
Query: 736 IAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795
+A L P + DEPT+GLD + ++ N+ + G+T++ H +D +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTK 233
Query: 796 LVLMKNGGRIIYFG 809
+ G+II G
Sbjct: 234 RTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L +++ R G + +L G +GAGK+TLM VLSG G EG+I G R +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI-RDT 79
Query: 662 GYCEQND---IHS-----PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
E+ IH ++V E+I + +D ++L ++LD I
Sbjct: 80 ---ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-I 135
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
P V L Q++ + IA L ++ +DEPT+ L A ++ ++++
Sbjct: 136 N---PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA 191
Query: 774 TGRTVVC 780
G + C
Sbjct: 192 HG--IAC 196
|
Length = 506 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGI-IEGDIRIGG----YPK 652
L +I + +TA++G SG GK+T + L+ + + + G++ G K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 653 VQHTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL- 710
V R + G Q P ++ +++ + R+ + K E V + L+ + L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
D +KD L + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRL-HTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 5/165 (3%)
Query: 952 NILGALFSAAVFFGIVNCSLVIPL-VTTERTVLYRERFAGM-YSPWAYSFAQVLVEVPYL 1009
L +F I+ +L+I L + E+ +ER SP Y ++L ++
Sbjct: 92 GYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVG 151
Query: 1010 FIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILAS 1069
IQ +I +++ + G + L + +G L+ SL N + A ++ S
Sbjct: 152 LIQLLIILLL---LFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVIS 208
Query: 1070 SFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYG 1114
+L+ F G P P +P + W + + P + G+L YG
Sbjct: 209 ILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 52/206 (25%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
Q+L +++ + G AL+G SG+GK+TL+ ++ GD+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLL---------QLLTGDL-------------- 52
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL--DGIKDSL 717
IT++ V LS+ I +N Q L ++++L
Sbjct: 53 --------KPQQGEITLDGVPVSDLEKALSSLI------SVLN---QRPYLFDTTLRNNL 95
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
G S +R+RL +A L+ + I+ +DEPT GLD ++ + V++ +T
Sbjct: 96 -GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKT 149
Query: 778 VV-CTIHQPSIDIFEAFDDLVLMKNG 802
++ T H I E D ++ ++NG
Sbjct: 150 LIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L I T G + AL+G +GAGK+TLM +++G G + IGG P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAH 84
Query: 662 GY----CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
Q + PN++V+E+I+F L + S K + ++L + DS
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK---MKQLLAALGCQLDLDSS 137
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
G L R+ + I L+ + I+ +DEPT+ L + ++ ++ G
Sbjct: 138 AGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG 192
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVI 819
+V H+ +I + D + +M++G I G S I
Sbjct: 193 IVFISHKLP-EIRQLADRISVMRDGT-IALSGKTADLSTDDI 232
|
Length = 510 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 37/237 (15%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI--RIG-----GYP 651
++L +I+ T G + ++G SGAGK+ LM VL G G I + GY
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 652 KVQHTFARISGYCEQ------------NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAE 699
+ C +D I +I+ R T +
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ---RTFALYGDDTVLD 129
Query: 700 FVNEVLQTIELDG---IKDSLVGLPGVN----------GLSTEQRKRLTIAVELVANPSI 746
V E L+ I +G + ++ + V LS +++R+ +A +L P +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 747 IFMDEPTSGLDARAAATVMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
DEPT LD + A V A++ V +G ++V T H P + I + D + ++NG
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 46/185 (24%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQ 654
+ + L I F +TAL+G SG GK+T + L+ G I G++ + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG----- 71
Query: 655 HTFARISGYCEQNDIHSPN---------------------ITVEESIVFSAWLRLSTQID 693
+I++PN ++ E++++ LRL+ D
Sbjct: 72 ------------QNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG--LRLAGVKD 117
Query: 694 SKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752
E V L+ + D +KD L LS Q++R+ IA L P +I +DEP
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHL--HESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 753 TSGLD 757
TS LD
Sbjct: 176 TSALD 180
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP--KVQHT 656
L S ++ T G L + G +GAGKT+L+ +L+G R G++ G P + +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDE 71
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
+ + Y H P I E +A LR ++ E + E L + L G +
Sbjct: 72 YHQDLLYLG----HQPGIKTE----LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE 123
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D +P V LS Q++R+ +A + + +DEP + +D + A + + E
Sbjct: 124 D----VP-VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ 178
Query: 775 GRTVVCTIHQP 785
G V+ T HQ
Sbjct: 179 GGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 35/232 (15%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGGY----- 650
Q L DIT G L+G SGAGK++L+ VL+ ++E G + I G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN------LLEMPRSGTLNIAGNHFDFS 69
Query: 651 ----PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS--TQIDSKTKAEFVNEV 704
K R G Q P++TV+++++ A R+ ++ + +AE ++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAE---KL 125
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L+ + L D P LS Q++R+ IA L+ P ++ DEPT+ LD A +
Sbjct: 126 LERLRLKPYADRF---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSC 816
+ ++ + ETG T V H+ +++ V+ G I+ G SC
Sbjct: 181 VSIIRELAETGITQVIVTHE--VEVARKTASRVVYMENGHIV---EQGDASC 227
|
Length = 242 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHT 656
L +++ T + G + AL+G +G+GK+TL+ ++G G+I I G
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 657 FARISGYCEQ 666
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP 651
+Q + L +D++ + G +++G +G+GK+T + R G++E G I I G
Sbjct: 17 DQEKYTL-NDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDL 70
Query: 652 KVQHTFARIS---GYCEQN-DIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEVLQ 706
+ I G QN D TVE+ + F L + I + E VNE L+
Sbjct: 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALE 126
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ + K+ P LS Q++R+ IA + P II +DE TS LD +++
Sbjct: 127 LVGMQDFKERE---PA--RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 767 AVKNVVET-GRTVVCTIHQPSIDIFE-AFDDLVL-MKNG 802
+K + + TV+ H D+ E A D VL MKNG
Sbjct: 182 TIKGIRDDYQMTVISITH----DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 40/224 (17%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTL-------MDVLSGRKTGGIIEGDIRIGGYPKV 653
+L + +PG + G +G+GK++L +D+ G+ +I+G I I P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI---VIDG-IDISKLP-- 89
Query: 654 QHTF-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
HT +R+S I +++ I+FS +R + + K + + E L+ +L
Sbjct: 90 LHTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 713 IKDSLVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
+ SL G G++ + TE QR+ +A V SI+ MDE T+ +D A +
Sbjct: 138 MVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM-ATENI 194
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808
++ V RTVV H+ S I +A DLVL+ + G ++
Sbjct: 195 LQKVVMTAFADRTVVTIAHRVS-TILDA--DLVLVLSRGILVEC 235
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 23/219 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFA 658
L ++ G L+G +G+GK+TL+ L+G +G II + I KV+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLSDI 81
Query: 659 R-----ISGYCEQNDIHSPNITVEESIVFSAW-LRLSTQIDSKTKAEFVNEVLQTIELDG 712
R + Y E T+E+ I F L LS + E N V + + + G
Sbjct: 82 RKKVGLVFQYPEYQLFEE---TIEKDIAFGPINLGLS-------EEEIENRVKRAMNIVG 131
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV- 771
+ LS Q++R+ IA + P I+ +DEPT+GLD + ++ +K +
Sbjct: 132 LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH 191
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
E T++ H S++ D +++ N G+ G
Sbjct: 192 KEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KVQHTFAR 659
L +I + AL+G +G+GK+TL +L G + EG+IR+ G P + H+ R
Sbjct: 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLR 414
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL--------D 711
Q D P + + F A + L I E V + L+T++L D
Sbjct: 415 QGVAMVQQD---PVVLADT---FLANVTLGRDISE----EQVWQALETVQLAELARSLPD 464
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
G+ + +G G N LS Q++ L +A LV P I+ +DE T+ +D+ + +A+ V
Sbjct: 465 GL-YTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVL 798
E T+V H+ S I EA LVL
Sbjct: 523 REH-TTLVVIAHRLST-IVEADTILVL 547
|
Length = 592 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTF 657
+LSDI+ T + T ++G+SG+GK+TL +L G G+I + G+ HT
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTL 546
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
+ Y Q E +FS + + + +K +E+ E+ IKD +
Sbjct: 547 RQFINYLPQ-----------EPYIFSGSILENLLLGAKENVS-QDEIWAACEIAEIKDDI 594
Query: 718 VGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+P G TE Q++R+ +A L+ + ++ +DE TS LD T +
Sbjct: 595 ENMP--LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD---TITEKK 649
Query: 767 AVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
V N++ +T++ H+ + + + D ++++ +G I
Sbjct: 650 IVNNLLNLQDKTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 614 LTALMGVSGAGKTTLMDVLS--GRKTGGI-IEGDIRIGGY----PKVQ-HTFARISGYCE 665
+TA++G SG GK+T + L+ G + +EG + G P++ + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVN 724
Q P +++ E++ + +R+S ++ E V L+ L +KD L
Sbjct: 95 QRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN--KSAL 149
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 3e-07
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 48/195 (24%)
Query: 589 MRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 648
+R F + Q+L +I F +TA++G SG GK+TL+ L+ + I+ G
Sbjct: 7 IRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN--RMNDIVSG----- 59
Query: 649 GYPKVQHTFARISG--YCEQNDIHSPNI---------------------TVEESIVFSAW 685
AR+ G + +I+SPN+ ++ +++ F
Sbjct: 60 ---------ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110
Query: 686 LRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSL--VGLPGVNGLSTEQRKRLTIAVELVA 742
+ L T S+ E V + L+ L D +KD+L GL LS Q++RL IA L
Sbjct: 111 M-LGTTAQSRLD-EVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 743 NPSIIFMDEPTSGLD 757
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L ++ RP + ALMG +GAGK+TL+ L G +K G I G + ++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKE-IDFKSSK 68
Query: 660 ISGYCEQNDIHSP-NITVEESIVFSAWL-RLSTQ---IDSK-----TKAEFVNEVLQTIE 709
+ + +H N+ ++ S++ + WL R T+ +D TKA F E
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD-------E 121
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
LD D V LS Q + + IA N I+ MDEPTS L + + ++
Sbjct: 122 LDIDIDPRAK---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ E G +V H+ +IF+ D++ ++++G
Sbjct: 179 KLKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 591 KNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650
NGF RL T RPG + ++G +G GK+T + +L+G + +
Sbjct: 86 VNGFKLYRLP-------TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DP 134
Query: 651 PKVQHTFARISGYCEQN---DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
P R G QN ++ + + + + K V E+L+
Sbjct: 135 PSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD--LIPKVVKGK-----VGELLKK 187
Query: 708 IELDGIKDSLVGLPG--------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
++ G D +V G V+ LS + +R+ IA L+ + + F DEP+S LD R
Sbjct: 188 VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247
Query: 760 AAATVMRAVKNVVETGRTVVCTIH 783
R ++ + E G+ V+ H
Sbjct: 248 QRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI------IEGDIRIGGYPKVQ 654
+L D++ PG +TAL+G +GAGK+TL+ L+G TGG + GD+ + G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 655 ---HTFARISGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIE 709
AR+ Q + + E ++ + R + + + Q +
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG----EIAWQALA 131
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTSGLDARA 760
L G +LVG V LS + R+ A L P + +DEPT+ LD
Sbjct: 132 LAG-ATALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189
Query: 761 AATVMRAVKNVVETGRTVVCTI-HQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
++ V+ + V I H P++ A D + M G I+ G
Sbjct: 190 QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA--DRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI--IEGDIRIGGYP-KVQHT 656
Q L DI +TAL+G SG GK+T + + R I I+G + I G K Q
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFN-RMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 657 FA--RISGYCEQNDIHSPNITVE---ESIVFSAWLRLSTQIDSKTKAE-FVNEVLQTIEL 710
A + G Q PN+ V+ E+I ++ +L I +K + E V + LQ + L
Sbjct: 75 VALRKNVGMVFQQ----PNVFVKSIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGL 128
Query: 711 -DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
+ +KD L LS Q++RL IA L P ++ +DEPTS LD ++ + +K
Sbjct: 129 FEEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
Query: 770 NV 771
+
Sbjct: 187 EL 188
|
Length = 246 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 56/190 (29%), Positives = 78/190 (41%), Gaps = 45/190 (23%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGGYPKVQH 655
Q L D+ +TA +G SG GK+T + L+ R I + G I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDG------ 85
Query: 656 TFARISGYCEQNDIHSPNITVEE-----SIVFSAWLRLSTQID------------SKTKA 698
DI+ P + V E +VF I +++KA
Sbjct: 86 -----------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKA 134
Query: 699 EF---VNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
E V L+ L + +KD L PG GLS Q++RL IA + +P +I MDEP S
Sbjct: 135 ELDEIVETSLRKAGLWEEVKDRL-HEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192
Query: 755 GLDARAAATV 764
LD A A V
Sbjct: 193 ALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 607 GTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQHTFARISGYC 664
G+ + ++G +G GKTT + +L+G G IE ++ Y K Q+ A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSK-TKAEFVNEVLQTIELDGIKDSLVGLPGV 723
TV + LS+ T F E+ + ++++ I D V
Sbjct: 77 ----------TVRD--------LLSSITKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
LS + +R+ IA L + I +DEP++ LD + ++ E
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 39/245 (15%)
Query: 574 VTFEDL--RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
+TF+ + RY P R L D+ + G A++G +G+GK+TL+
Sbjct: 3 ITFQKVEHRYQYKTPFERRA----------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQH 52
Query: 632 LSG--RKTGGIIE-GD--IRIGGYPKVQHTFARISGYCEQNDIHSP-NITVEESIVFSAW 685
L+G + T G + G+ I G K + G Q H TVE+ I F
Sbjct: 53 LNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPM 112
Query: 686 LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP------GVNGLSTEQRKRLTIAVE 739
++ D+K KA E+++ LVGLP LS Q +R+ IA
Sbjct: 113 NFGVSEEDAKQKAR---EMIE----------LVGLPEELLARSPFELSGGQMRRVAIAGV 159
Query: 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVL 798
L P ++ +DEPT+GLD + +M + E G T V H D D +V+
Sbjct: 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVV 218
Query: 799 MKNGG 803
M G
Sbjct: 219 MHKGT 223
|
Length = 290 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 15/205 (7%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFA 658
L +I + G ++G +G+GK+TL L+G + G ++ I G + K+Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 659 RISGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
++ G QN + TVEE + F I+ + + V+ L I L+ +
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR- 132
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
LS Q + + +A L P + DE TS LD + V+ +K + E G+T
Sbjct: 133 ----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNG 802
+V H +++ D +++M G
Sbjct: 189 IVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 62/242 (25%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 652
Q+L DI +TA +G SG GK+T + D + K ++G++ I G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI-- 72
Query: 653 VQHTFARISGYCEQNDIHSPNITV-----EESIVF--------------SAWLRLSTQID 693
D++S + V + +VF + +L
Sbjct: 73 ---------------DVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAK 117
Query: 694 SKTKA-EFVNEVLQTIEL-----DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747
+K K E V + L ++ L D +KDS L G Q++RL IA + P+++
Sbjct: 118 NKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG------GQQQRLCIARAIAVKPTML 171
Query: 748 FMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807
MDEP S LD A + ++ ++ T++ H S+ + D V GRI+
Sbjct: 172 LMDEPCSALDPVATNVIENLIQE-LKKNFTIIVVTH--SMKQAKKVSDRVAFFQSGRIVE 228
Query: 808 FG 809
+
Sbjct: 229 YN 230
|
Length = 251 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 42/246 (17%)
Query: 574 VTFEDLRY-YVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 632
V F+ + + Y D L+DI+ + G TAL+G +G+GK+T+
Sbjct: 6 VEFKHVSFTYPDSKKPA------------LNDISFSIPRGSWTALIGHNGSGKSTI---- 49
Query: 633 SGRKTGGIIEGD------IRIGGYPKVQHTFARIS---GYCEQN-DIHSPNITVEESIVF 682
+ G++ D I + G T I G QN D TV + + F
Sbjct: 50 -SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108
Query: 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742
R + + V +VL + G+ D + P LS Q++R+ IA L
Sbjct: 109 GLENR---AVPRPEMIKIVRDVLADV---GMLDYIDSEPA--NLSGGQKQRVAIAGILAV 160
Query: 743 NPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEA-FDDLVLMK 800
P II +DE TS LD +++ ++ + + TV+ H DI EA D VL+
Sbjct: 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH----DIDEANMADQVLVL 216
Query: 801 NGGRII 806
+ G+++
Sbjct: 217 DDGKLL 222
|
Length = 282 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGR------KTGGIIEGDIRIGGY--PKVQHTFARIS 661
R G + L+G +G GK+T + +L+G+ K + D + + ++Q+ F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
+ I P ++ + K + ++E++ +EL + D
Sbjct: 84 EG-DVKVIVKPQYVDLIPKAVKG--KVGELLKKKDERGKLDELVDQLELRHVLDR----- 135
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
++ LS + +R+ IA L + F DEP+S LD + R ++ + E V+
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVV 195
Query: 782 IHQPSI 787
H ++
Sbjct: 196 EHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 594 FNQTRLQL-------LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 646
FN +RL L L DIT + +MG SG+GK+TL+ VL+ + I + I+
Sbjct: 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN--RLIEIYDSKIK 68
Query: 647 IGGYPKVQH-----------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK 695
+ G KV + + G Q P++++ ++I + L+ + +
Sbjct: 69 VDG--KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKR 124
Query: 696 TKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
+ V E L+ + L + D L P + LS Q++RLTIA L P ++ MDEPTS
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRL-NSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
Query: 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
+D + + + + ++ +V H P
Sbjct: 183 MIDIVNSQAIEKLITE-LKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 564 KMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGA 623
+ +L L+ TF RY R F + ++ + ++ T R G A++G +G+
Sbjct: 2 ETLLEVRNLSKTF---RY--------RTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGS 50
Query: 624 GKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARISGYCE---QNDIHSPNITVE 677
GK+TL +L+G +IE G++ I +P ++ S Q+ S N
Sbjct: 51 GKSTLAKMLAG-----MIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105
Query: 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA 737
S + LRL+T ++ + + + + E L+ + L + D P + L+ Q++RL +A
Sbjct: 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHASYYP--HMLAPGQKQRLGLA 161
Query: 738 VELVANPSIIFMDEPTSGLD 757
L+ P +I DE + LD
Sbjct: 162 RALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII--EG-DIRI 647
G+ ++L++I+ + R G A+ G SG GK+TL+ +++ T G + EG D+
Sbjct: 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST 69
Query: 648 GGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
+ ++S YC Q + TVE++++F W + + D + +
Sbjct: 70 LKPEAYRQ---QVS-YCAQTPALFGD-TVEDNLIFP-WQIRNRRPDRAAALDLLARF--- 120
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+ DS++ + LS +++R+ + L P I+ +DE TS LD R
Sbjct: 121 ----ALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK----RN 171
Query: 768 VKN-----VVETGRTVVCTIHQP 785
++ V E V+ H
Sbjct: 172 IEEMIHRYVREQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 41/219 (18%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
+++S++ T G L+G SG GKTT++ +++G +T G I + G + H A
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQ-DITHVPA- 83
Query: 660 ISGYCEQNDIHS--------PNITVEESIVFSAWLRLSTQIDSKT-KAEF---VNEVLQT 707
E +++ P++TV E++ F LR+ KT AE V E L+
Sbjct: 84 -----ENRHVNTVFQSYALFPHMTVFENVAFG--LRMQ-----KTPAAEITPRVMEALRM 131
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
++L+ + LS Q++R+ IA +V P ++ +DE S LD + +
Sbjct: 132 VQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186
Query: 768 VKNVV-ETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG 802
+K + + G T V H D EA D +V+M++G
Sbjct: 187 LKALQRKLGITFVFVTH----DQEEALTMSDRIVVMRDG 221
|
Length = 375 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 41/209 (19%)
Query: 619 GVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQHTFARISGYCEQNDIHSP 672
G SG GK+TL+ +++G + I GD+ IG P R G Q+ P
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPA-----ERGVGMVFQSYALYP 88
Query: 673 NITVEESIVFSAWLRLS----TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728
+++V E++ F L+L+ +I+ + VN+V + ++L + D P LS
Sbjct: 89 HLSVAENMSFG--LKLAGAKKEEINQR-----VNQVAEVLQLAHLLDRK---P--KALSG 136
Query: 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA--VKNVVETGRTVVCTIHQPS 786
QR+R+ I LVA PS+ +DEP S LDA A MR + GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH--- 192
Query: 787 IDIFEAF---DDLVLMKNGGRIIYFG-PL 811
D EA D +V++ + GR+ G PL
Sbjct: 193 -DQVEAMTLADKIVVL-DAGRVAQVGKPL 219
|
Length = 369 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 26/225 (11%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
++L + + G + A+MG +G+GK+TL V++G I+EGDI G +
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 660 IS------GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV--LQTIELD 711
+ + Q I P ++ + +LRL+ +SK K + + E+ L+ +E+
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNAD------FLRLA--YNSKRKFQGLPELDPLEFLEII 130
Query: 712 GIKDSLVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
K LVG+ VN G S ++KR I + + + +DE SGLD A +
Sbjct: 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKII 190
Query: 765 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ ++ + +++ H + + D + +M+N G+II G
Sbjct: 191 AEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQN-GKIIKTG 234
|
Length = 252 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 566 ILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGK 625
+L L+ TF R+ + ++ T R G A++G +G+GK
Sbjct: 4 LLEVRNLSKTF------RYRTGLFRRQTVEAVK-----PVSFTLREGQTLAIIGENGSGK 52
Query: 626 TTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARISGYCE---QNDIHSPNITVEES 679
+TL +L+G +IE G+I I +P ++ S Q+ S N +
Sbjct: 53 STLAKMLAG-----MIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107
Query: 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL-PG-----VNGLSTEQRKR 733
+ LRL+T ++ + + + + E L+ +VGL P + L+ Q++R
Sbjct: 108 QILDFPLRLNTDLEPEQRRKQIFETLR----------MVGLLPDHANYYPHMLAPGQKQR 157
Query: 734 LTIAVELVANPSIIFMDEPTSGLDA 758
+ +A L+ P II DE + LD
Sbjct: 158 VALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 40/214 (18%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654
RL +L +++ T G AL G SGAGK+TL+ L G I V+
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA--NYLPDSGRIL------VR 68
Query: 655 HT-----FARIS------------GYCEQNDIHSPNIT----VEESIVFSAWLRLSTQID 693
H A+ S GY Q P ++ V E ++ R + +
Sbjct: 69 HEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA- 127
Query: 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
+A E+L + + + L LP S +++R+ IA +A+ I+ +DEPT
Sbjct: 128 ---RAR---ELLARLNIP---ERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPT 177
Query: 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSI 787
+ LDA V+ + G ++ H +
Sbjct: 178 ASLDAANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 36 TDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 95
+ L+++GL+ D +SGGQK+R+ ++ L +DE + GLD +
Sbjct: 115 VEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 96 TFQIVSFLKHLVHITDATALIS-----LLQPAPETFDLFDDVILMAEGK 139
+++ LK L T +I LL +L D VI++ +GK
Sbjct: 170 RRELLELLKKL-KAEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQ++R+ ++ L +DE ++GLD ++ +++ L+ L T +I P
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDP 140
Query: 122 APETFDLFDDVILMAEGK 139
D VI++ +GK
Sbjct: 141 -ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 594 FNQTRLQLLSDITGTFRPG-ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 651
N + + D++ T R G IL + G+ GAG+T L L G + G+I + G P
Sbjct: 267 RNLSGGGKVRDVSFTVRAGEIL-GIAGLVGAGRTELARALFGAR--PASSGEILLDGKPV 323
Query: 652 KVQHTFARIS---GYCEQNDIHS----PNITVEESIVFSAWLRLSTQ--IDSKTKAEFVN 702
+++ I Y D S ++++ E+I ++ R S + ID + +
Sbjct: 324 RIRSPRDAIKAGIAYVP-EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAE 382
Query: 703 EVLQTIELDGIK----DSLVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
++ + IK + +G L G N Q+K + +A L +P ++ +DEPT G+D
Sbjct: 383 RYIRRLR---IKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGID 433
Query: 758 ARAAATVMRAVKNVVETGRTVV 779
A A + R ++ + G+ ++
Sbjct: 434 VGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV--QHTFA 658
+L ++ +PG + A++G SGAGKTTL+ ++ G + G E G +V A
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
I G E P E +I+ S D E +N G+ D+++
Sbjct: 458 LIPGEYE------PEFG-EVTILEHLR---SKTGDLNAAVEILNRA-------GLSDAVL 500
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRT 777
+ LST Q++R +A L P+++ +DE + LD A V R + + E G T
Sbjct: 501 YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGIT 560
Query: 778 VVCTIHQPSIDIFEAF--DDLVLMKNGGRI 805
++ H+P ++ A D L+L+ G
Sbjct: 561 LIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---YPKVQHTFA-----RISGY 663
GI TA+ G SGAGKT+L++ +SG +G I + G + + RI GY
Sbjct: 25 GI-TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRI-GY 80
Query: 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723
Q+ P+ V + L + A+F + + L GI+ L PG
Sbjct: 81 VFQDARLFPHYKVRGN--------LRYGMAKSMVAQF----DKIVALLGIEPLLDRYPG- 127
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 -SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 614 LTALMGVSGAGKTTLM-------DVLSGRKTGGII--EGDIRIGGYPKVQHTFARISGYC 664
+TA++G SG GK+T + D++ T G + +G+ G + +I G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKI-GMV 125
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGV 723
Q P ++ ++I + RL D K E V + L+ L D + D L
Sbjct: 126 FQKPNPFPK-SIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--KNA 180
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
GLS Q++RL +A L P I+ +DEPTS LD +A A +
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI 221
|
Length = 286 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 6e-06
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP 651
L ++ + R G + AL+G +GAGK+TLM +LSG + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 19/153 (12%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR--ISGYCEQN 667
G A++G SGAGK+TL+++++G T G + + G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 668 DIHSPNITVEESIVF--SAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVN 724
++ ++TV ++I + L+L+ K L I GI+D L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREK---------LHAIARQMGIEDLLARLPG-- 128
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 587 SAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEG 643
S + K F Q L +I +TAL+G SG GK+T + + + G EG
Sbjct: 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 644 DIRIGGYPKVQHTFARISGYCE-----QNDIHSPN---ITVEESIVFSAWLRLSTQIDSK 695
+I + +P + + E PN ++ E++ + LR+
Sbjct: 77 EIIL--HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG--LRIRGVKRRS 132
Query: 696 TKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
E V L+ L D +KD L L LS Q++RL IA L +P I+ DEPTS
Sbjct: 133 ILEERVENALRNAALWDEVKDRLGDL--AFNLSGGQQQRLCIARALATDPEILLFDEPTS 190
Query: 755 GLDARAAATVMRAVKNV 771
LD A A++ + ++
Sbjct: 191 ALDPIATASIEELISDL 207
|
Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG--------YPKVQH 655
DI+ + G + G+ G+G+T LM+ L G G+IR+ G V+
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS---------TQIDSKTKAEFVNEVLQ 706
A I+ N PN ++ +++ S L+ ++D + AE E+L
Sbjct: 339 GMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
++ + ++ L G N Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 398 -LKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
Query: 767 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
++ + + G+ ++ + +I D + + G
Sbjct: 451 VMRQLADDGKVIL-MVSSELPEIITVCDRIAVFCEG 485
|
Length = 510 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 8e-06
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGGY 650
N+T+ +L D+ + +TA +G SG GK+T + + L+ G EG+I G
Sbjct: 91 MNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIV--FSAWLRLSTQIDSKTKAEFVNEVLQTI 708
+ + + E SI + R + D K + V + L++
Sbjct: 150 NTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA 209
Query: 709 EL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
L D +KD L N LS Q++RL IA + P ++ MDEPTS LD A A +
Sbjct: 210 ALWDEVKDDLD--KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI 264
|
Length = 329 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 31/162 (19%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGD--IRIGGYPKVQH 655
++LSD++ +PG + L+G +GAGK+TL+ V+ G G+I+ + +RIG P+ +
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY 77
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
D P +TV + +LRL TK E + L+ ++
Sbjct: 78 L-----------DTTLP-LTV------NRFLRLR----PGTKKEDILPALKRVQ----AG 111
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 38/213 (17%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-- 669
G + L+G SG GKTT++ +++G + EG I I G V H +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-EDVTHR------SIQQRDICM 82
Query: 670 --HS----PNITVEESIVFSAWLRLSTQIDSKTK-AEFVNEVLQTIELDGIKDSLVGLPG 722
S P++++ E++ + L K + + V E L+ ++L G +D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG----LKMLGVPKEERKQRVKEALELVDLAGFEDRYV---- 134
Query: 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAATVMRAVKNVVETGRTVV 779
+ +S Q++R+ +A L+ P ++ DEP S LDA R+ +R ++ + T +
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--QFNITSL 191
Query: 780 CTIHQPSIDIFEAF--DDLVLMKNGGRIIYFGP 810
H S EAF D V++ N G+I+ G
Sbjct: 192 YVTHDQS----EAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 38/227 (16%)
Query: 594 FNQTRLQL-LSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------------GRKTGG 639
+T L L + D + G + +MG+SG+GK+T++ +L+ G
Sbjct: 35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK 94
Query: 640 IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAE 699
I + ++R K+ F Q+ P++TV ++ F L + + KA
Sbjct: 95 ISDAELREVRRKKIAMVF--------QSFALMPHMTVLDNTAFGMELAGINAEERREKA- 145
Query: 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
L + G+++ P + LS R+R+ +A L NP I+ MDE S LD
Sbjct: 146 -----LDALRQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198
Query: 760 AAATVM-RAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG 802
+ VK + RT+V H D+ EA D + +M+NG
Sbjct: 199 IRTEMQDELVKLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNG 241
|
Length = 400 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 614 LTALMGVSGAGKTTLMDVLS-------GRKTGGII---EGDIRIGGYPKVQHTFARISGY 663
+TA++G SG GK+T + L+ KT G I + +I Y V+ +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS-VEELRTNVGMV 110
Query: 664 CEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVG 719
++ PN ++ +++ + ++ D KT E V + L+ + D +KD L
Sbjct: 111 FQK-----PNPFPKSIYDNVTYGP--KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-- 161
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 31 ENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 90
E + + +L++LGL A+ +SGG K++L+ ++G L +DE ++G
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
Query: 91 LDSSTTFQIVSFLKHLVH 108
LD ++ I + +
Sbjct: 164 LDPASRRAIWDLILEVRK 181
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 94
+ + K L L D VG S G K+++ +V L +DE ++GLD
Sbjct: 113 RIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167
Query: 95 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
T + F+K L + A S E L D VI++ +G++V G
Sbjct: 168 TRRKFHDFIKQLKNEGRAVIFSS--HIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQ 666
G G + ++G +G GKTT + +L+G +I+ D G + ++S Y Q
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-----VIKPDE--GSEEDL-----KVS-YKPQ 408
Query: 667 NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726
+ TVE+ + S + + F E+++ + L+ + + V + L
Sbjct: 409 YISPDYDGTVEDLL-------RSAIRSAFGSSYFKTEIVKPLNLEDLLERPV-----DEL 456
Query: 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
S + +R+ IA L + +DEP++ LD V + ++ +E
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504
|
Length = 591 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 34/219 (15%)
Query: 585 IPSAMRKN-GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG 643
IP+ N F ++L ++ +TA++G SG GK+T + L+ +E
Sbjct: 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LES 61
Query: 644 DIRIGGYPKVQHTFARISGYCEQNDIH-----------SPNI---TVEESIVFSAWL--- 686
++R+ G +V+ F + Y + +++ PN+ +V +++ + +
Sbjct: 62 EVRVEG--RVE--FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 687 RLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 745
R +ID + V L+ +L D IK + LS Q++RL IA L P
Sbjct: 118 RPKLEID-----DIVESALKDADLWDEIKHKI--HKSALDLSGGQQQRLCIARALAVKPK 170
Query: 746 IIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIH 783
++ MDEP GLD A+ V ++++ + + T+V H
Sbjct: 171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG--YPKVQHTFA 658
LL I+ G L L G +GAGKTTL+ +++G +G+I K T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ + +P +T+ E+ ++ I A + E+ + L+ + D
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLYD--------IHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
GL LS+ Q++++ + ++ + +DEP LD + T++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 779 VCTIHQ 784
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 670
G + G +GAGKTTL+ VL+G G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 671 SPNITVEESIVFSAWL--RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728
+++ E++ F L R + Q+ L + L G +D+LV LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTLV-----RQLSA 140
Query: 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
Q+KRL +A ++ + +DEP + LD V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL--L 119
SGGQ++R+ +V L +DE G+D T I L+ L T L+ L
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDL 192
Query: 120 QPAPETFDLFDDVILMAEGKIVYHG 144
+ FD V+L+ +V G
Sbjct: 193 GLVL---EYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
+L++LG AD G +S G+++R+ +V L +DE + GLD Q
Sbjct: 155 LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+++ L+ L A AL+ + A E F +L+ EG++V G
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS +++RL A L+ P +F+DE TS LD + + + +K E G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 786 SIDIFEAFDDLVLMKNGGRI 805
S+ F D ++ + G
Sbjct: 149 SLWKF--HDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTT----LMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 657
+ +I+ T RPG L+G SG+GK+T L+ +++ + G+I G P H
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQP--LHNL 352
Query: 658 ARISG----------YCEQNDIHSPNITVEESIVFSAWLRL-STQIDSKTKAEFVNEVLQ 706
R + + N +P + V + I LR+ + + + + V V++
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVME 410
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ LD ++ P S QR+R+ IA L+ PS+I +DEPTS LD A ++
Sbjct: 411 EVGLD--PETRHRYPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466
Query: 767 AVKNVVETGR 776
+K++ + +
Sbjct: 467 LLKSLQQKHQ 476
|
Length = 529 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 585 IPSAMRKNGF----NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----- 635
P+ KNG+ ++T LSDI G L A++G +G GKT+L+ + G
Sbjct: 612 APAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE 671
Query: 636 KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK 695
+ +I G + P+V F N TV E+I+F + + +
Sbjct: 672 TSSVVIRGSVAY--VPQVSWIF---------------NATVRENILFGS----DFESERY 710
Query: 696 TKAEFVNEVLQTIELDGIKD-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
+A V + ++L +D + +G GVN +S Q++R+++A + +N I D+P S
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLS 769
Query: 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
LDA A V + G+T V +Q + D ++L+ G
Sbjct: 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 19/162 (11%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQHTFARISGYCE- 665
R + +L+G +GAGKTT+ + L+G + TGG I I G P H AR+ G
Sbjct: 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG--HQIARM-GVVRT 85
Query: 666 -QNDIHSPNITVEESIVFSAWLRLSTQIDS---KTKA------EFVNEVLQTIELDGIKD 715
Q+ +TV E+++ + +L T + S KT A E ++ +E G+ +
Sbjct: 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE 145
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
N L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 146 -HANRQAGN-LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 40/203 (19%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTF 657
LLS++ RPG + G SGAGKT+L+ L+G +G I
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS---------------- 451
Query: 658 ARISGYCEQNDI-------HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
+ + + P T+ E++ + + VL + L
Sbjct: 452 -----MPADSALLFLPQRPYLPQGTLREALCYP-------NAAPDFSDAELVAVLHKVGL 499
Query: 711 DGIKDSLVGL-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
+ + L LS +++RL A L+ P +F+DE TS LD + + +K
Sbjct: 500 GDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559
Query: 770 NVVETGRTVVCTIHQPSIDIFEA 792
+ TV+ H+P++ F +
Sbjct: 560 EEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 50 DTMVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108
D +G+ R R +SGGQ++ + ++ L +DE ++ +D+ + + LK +
Sbjct: 592 DMQIGE--RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649
Query: 109 ITDATALI-----SLLQPAPETFDLFDDVILMAEGKIVYHGP 145
T ++ SLL DL D +I+M G+IV GP
Sbjct: 650 --GKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 42/152 (27%), Positives = 52/152 (34%), Gaps = 61/152 (40%)
Query: 616 ALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARISGYCEQNDIHSP 672
L+G SG GK+TL GR G+ E G+I G
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEG----------------------- 74
Query: 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG------L 726
I +K E VL+ +E VGLP L
Sbjct: 75 -----------------KDITKLSKEERRERVLELLEK-------VGLPEEFLYRYPHEL 110
Query: 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758
S QR+R+ IA L NP +I DEP S LD
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 660
LL D++ + G LT ++G +G+GK+TL+ L + I EG + + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVW------AERSIAYV 726
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
+Q I N TV +I+F + D+ ++ ++ Q L G ++ +G
Sbjct: 727 P---QQAWIM--NATVRGNILFFDEEDAARLADAVRVSQLEADLAQ---LGGGLETEIGE 778
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC 780
GVN LS Q+ R+++A + AN + +D+P S LDA V+ G+T V
Sbjct: 779 KGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837
Query: 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
HQ + + D +V + GR+ + G
Sbjct: 838 ATHQ--VHVVPRADYVVALG-DGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 62 SGGQKKRLT-TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS--L 118
SGGQK+R+ G L +GP L +DE + GLD +++ LK L T +I
Sbjct: 140 SGGQKQRVAIAGVLAMGP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198
Query: 119 LQPAPETFDLFDDVILMAEGKIVYHGP 145
L+ E D V+++ +GKI+ G
Sbjct: 199 LELVLE---YADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 50 DTMVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108
D +G+ R RG+SGGQ++ + ++ L +DE ++ +D ++ ++ L+ L
Sbjct: 131 DLQIGE--RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-- 186
Query: 109 ITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ D T +I +P+ DL D +I+M G+IV G
Sbjct: 187 LGDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 30/173 (17%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLS--------GRKTGGII-EGDIRIGGYPK 652
L +I +TA +G SG GK+TL+ + R G I+ +G+ +
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWL--RLS-TQIDSK-----TKAEFVNEV 704
+ A++ G Q P +++ ++I F L +LS ++D + TKA NEV
Sbjct: 89 IALLRAKV-GMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
KD L G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 147 ---------KDKL-HQSG-YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVG---PTRALFMDEISNGLDS 93
D++ +IL L+ + P+R+ +S GQ+ R EL P + LF+DE + GLD
Sbjct: 138 DFLTEILDLE----GFLKWPVRK-LSLGQRMRA---ELAAALLHPPKVLFLDEPTVGLDV 189
Query: 94 STTFQIVSFLKHLVHITDATALISLLQPAPETFD----LFDDVILMAEGKIVYHGPLS 147
+ I FLK AT L+ FD L D V+L+ +G++V+ G L+
Sbjct: 190 NAQANIREFLKEYNEERQATVLL-----TTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242
|
Length = 325 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 605 ITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY--------PKVQ 654
++ + G + ++G SGAGKTTL +++G T G E ++R+G P +
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG--EVNVRVGDEWVDMTKPGPDGR 360
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
R G Q P+ TV +++ + L L ++ ++ KA +++ E + +
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL-ARMKAVITLKMVGFDE-EKAE 418
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV-KNVVE 773
+ L P + LS +R R+ +A L+ P I+ +DEPT +D V ++ K E
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+T + H + + D LM++ G+I+ G
Sbjct: 477 MEQTFIIVSHDMDF-VLDVCDRAALMRD-GKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 67/233 (28%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653
+ + L ++ + +L + GVSG+GK+TL+ G G R+ +
Sbjct: 3 VSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLP- 55
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
F+R ++F ID LQ + I
Sbjct: 56 --KFSR------------------NKLIF---------IDQ----------LQFL----I 72
Query: 714 KDSLVGLP---GVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAV 768
L L ++ LS + +R+ +A EL + P ++ +DEP++GL + ++ +
Sbjct: 73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
Query: 769 KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP-LGQHSCKVIE 820
K +++ G TV+ H + + + II FGP G+ KV+
Sbjct: 133 KGLIDLGNTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVVF 174
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGGYPKVQHT 656
Q L +T RPG + L G SGAGK+TL+ ++ G + G I I +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 657 FARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
F R G Q+ + TV +++ + ++ D + + V+ L + G+ D
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKV---GLLD 129
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
P LS +++R+ IA +V P+++ DEPT LD + ++R + G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 776 RTVVCTIH 783
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGGY----P 651
+ L I+ F LTAL+G SG GK+T + L+ R I I G+I+ G
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGS 76
Query: 652 KVQHTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
K+ R G Q P +V +++ + L+++ D + + V E L+ +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI 133
Query: 711 -DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
KD+L S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 134 WKETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
|
Length = 251 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 7 EKLAGIFPDPD---VDAYMKAISAEGLEN-SLQTDYILKILGLDICADTMVG-----DPM 57
EK+ +F +PD V A + A GLEN ++ ++KI+ D+ AD VG D
Sbjct: 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVR-DVLAD--VGMLDYIDSE 140
Query: 58 RRGVSGGQKKRLT-TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116
+SGGQK+R+ G L V P + + +DE ++ LD + QI+ ++ L + T +I
Sbjct: 141 PANLSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VI 198
Query: 117 SLLQPAPETFDLFDDVILMAEGKIVYHG 144
S+ E ++ D V+++ +GK++ G
Sbjct: 199 SITHDIDEA-NMADQVLVLDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 54/218 (24%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
++L DI+ +F PG ++G++GAGK+TL+ +++G G+ R KV
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGIKV------ 70
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV--------------- 704
GY Q P TV E V + +D F NE+
Sbjct: 71 --GYLPQEPQLDPTKTVRE-NVEEGVAEIKDALD-----RF-NEISAKFAEPDADMDALL 121
Query: 705 -----LQTI-----------ELDGIKDSLVGLPG---VNGLSTEQRKRLTIAVELVANPS 745
LQ I +L+ D+L P V LS +R+R+ + L++ P
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 42/225 (18%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG------------------ 649
RPG + A+MG +G+GK+TL L+GR+ + G + G
Sbjct: 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM 82
Query: 650 ---YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
YP I G Q + + V R +D + + E
Sbjct: 83 AFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDRFDFQDLMEE--- 126
Query: 707 TIELDGIKDSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
I L + + L+ VN G S ++KR I V P + +DE SGLD A V
Sbjct: 127 KIALLKMPEDLL-TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 766 RAVKNVVETGRT-VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V ++ + R+ ++ T +Q +D + D V + GRI+ G
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIKP--DYVHVLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQND----- 668
+TA +G SG GK+T++ + + +I G R+ G KV TF + Y D
Sbjct: 38 ITAFIGPSGCGKSTILRCFN--RLNDLIPG-FRVEG--KV--TFHGKNLYAPDVDPVEVR 90
Query: 669 ------IHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSL- 717
PN ++ ++I + A + + D E V L+ L D +KD L
Sbjct: 91 RRIGMVFQKPNPFPKSIYDNIAYGARI-NGYKGDMD---ELVERSLRQAALWDEVKDKLK 146
Query: 718 -VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
GL LS Q++RL IA + P +I MDEP S LD + + + + E
Sbjct: 147 QSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202
Query: 777 TVVCT--IHQPS-IDIFEAFDDLVLMKNGGRIIYFG 809
++ T + Q + + AF ++ L + GGR Y
Sbjct: 203 IIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238
|
Length = 264 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 64/237 (27%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGGYPKVQH 655
Q L +++ +TAL+G SG GK+T + L+ R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSI-------- 76
Query: 656 TFARISGYCEQNDIHSPNITVEE-----SIVFSAWLRLSTQI-------------DSKTK 697
E DI+ P++ V E +VF I + K
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 698 AEFVNEVLQTIEL-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756
V L++ L D D L P ++ LS Q++RL IA L P II DEPTS L
Sbjct: 128 DGVVENALRSAALWDETSDRLKS-PALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
Query: 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
D + A + + N+ + V+ T + + LM G +I FG Q
Sbjct: 186 DPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM---GELIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 16/215 (7%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKV 653
++ + L+ ++ + G +++G +G+GK+T ++ G + G ++ D + V
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV 76
Query: 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEVLQTIELDG 712
+ +I + D TVE+ + F + Q I + + V+E L + +
Sbjct: 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALLAVNMLD 132
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
K LS Q++R+ +A + P II +DE TS LD +MR + +
Sbjct: 133 FKTREPAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187
Query: 773 ETGRTVVCTIHQPSIDIFEAF-DDLVLMKNGGRII 806
E + V +I D+ EA D +L+ G II
Sbjct: 188 EKYQLTVLSITH---DLDEAASSDRILVMKAGEII 219
|
Length = 277 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 15/219 (6%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---- 651
QT L ++ T +PG + + G +G+GK+TL+ ++ ++ + EGDIR P
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKL 382
Query: 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
++ +R++ + + S TV +I +I+ + V++ + L
Sbjct: 383 QLDSWRSRLAVVSQTPFLFSD--TVANNIALGRPDATQQEIEHVARLASVHD--DILRLP 438
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
D+ VG GV LS Q++R++IA L+ N I+ +D+ S +D R ++ ++
Sbjct: 439 QGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
E GRTV+ + H+ S + EA + LV+ G I G
Sbjct: 498 GE-GRTVIISAHRLSA-LTEASEILVMQH--GHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 62 SGGQKKRLTTGELIVGPTRAL-------FMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
SGGQ++R V RAL DE LD +++ Q++ LK + T
Sbjct: 146 SGGQQQR-------VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITV 198
Query: 115 LISLLQPAPETFDL----FDDVILMAEGKIVYHGP 145
++SL Q DL D ++ + +G+IV+ GP
Sbjct: 199 IVSLHQV-----DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 50 DTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107
DT++G+ RGV SGGQ++R+ ++ L +DE ++ LD+ + + + L+ L+
Sbjct: 129 DTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185
Query: 108 HITDATALI-----SLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ T + S ++ A D ++++ +GKIV G
Sbjct: 186 --KNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 45/240 (18%)
Query: 574 VTFEDL--RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
+ E+L RY D+P ++ +++ + G ++G +GAGK+TL +
Sbjct: 7 IEVENLSVRYAPDLPPVLK-------------NVSFKVKAGEKIGIVGRTGAGKSTL--I 51
Query: 632 LSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ 691
L+ + EG I I G IS ++ S I ++ +FS +R +
Sbjct: 52 LALFRFLEAEEGKIEIDG--------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103
Query: 692 IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751
+ E + L+ E G LS QR+ L +A L+ P ++ +DE
Sbjct: 104 PFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLDE 151
Query: 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIH--QPSIDIFEAFDDLVLMKNGGRIIYFG 809
T+ +D A + + ++ T T++ H + ID +D +++M + G + +
Sbjct: 152 ATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVM-DAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-04
Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 52/224 (23%)
Query: 554 KRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGI 613
+R R + R+ ++ + LT D V+ G G
Sbjct: 328 ERPPRDESERETLVEYPDLTKKLGDFSLEVE---------------------GGEIYEGE 366
Query: 614 LTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS 671
+ ++G +G GKTT +L+G G ++ +++I Y K Q I
Sbjct: 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP--------D 412
Query: 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVN-EVLQTIELDGIKDSLVGLPGVNGLSTEQ 730
+ TVE+ LR I + + E+++ ++L+ + D V LS +
Sbjct: 413 YDGTVED------LLR---SITDDLGSSYYKSEIIKPLQLERLLDKNV-----KDLSGGE 458
Query: 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+R+ IA L + + +DEP++ LD V +A++ + E
Sbjct: 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502
|
Length = 590 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 4e-04
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL--L 119
SGG+++R+ + L +DE ++ LD + +++ L+ L T ++ L L
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158
Query: 120 QPAPETFDLFDDVILMAEGKIVYHG 144
A D VIL+ +G+IV G
Sbjct: 159 NLA---ARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 42 ILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVS 101
I L + DT VG+ +SGGQ++RL ++ + L +DE ++ LD T I+
Sbjct: 592 IENLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 102 FL-KHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
L + L T +I+ T D +I++ +GKIV G
Sbjct: 651 NLLQILQGRT--VIIIA---HRLSTIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMDEISNGLDS 93
+ D +L +GL AD +V + SGG ++RL L+ P LF+DE + GLD
Sbjct: 111 RIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRP-EVLFLDEPTIGLDP 164
Query: 94 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
T + +++ L T L++ E L D V ++ G+I+ G
Sbjct: 165 QTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 28/195 (14%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQHTFARI 660
+ D++ R G + + GV+G G++ L++ +SG RK G I + G + R
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRE 330
Query: 661 S-----GYCEQNDIH---SPNITVEESIV--------FSAWLRLSTQIDSKTKAEFVNEV 704
Y ++ ++++ E++V FS L D + +F E+
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFL----DRRAIRKFAREL 386
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
++ E D ++ P LS +++L +A EL P ++ +PT GLD A +
Sbjct: 387 IE--EFD-VRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442
Query: 765 MRAVKNVVETGRTVV 779
+ + + G+ V+
Sbjct: 443 HERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+S GQKKR+ ++V + L +DE + GLD +I+ L + T +I+
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA--- 198
Query: 121 PAPETFDL------FDDVILMAEGKIVYHG 144
T D+ D+V +M EG+++ G
Sbjct: 199 ----THDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRI-GGYPKVQHT- 656
L++ + TF+ +T ++G +G+GK+T++ + +G +TG I GD I K++
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 657 -FARISGYCEQ-NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL--DG 712
+ G Q + T+E+ I F ++ + + + V E+L+ ++L D
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGP---VNLGENKQEAYKKVPELLKLVQLPEDY 143
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV- 771
+K S L G Q++R+ +A + + + + +DEPT GLD + + + +
Sbjct: 144 VKRSPFELSG------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN 197
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
E + ++ H ++D D V++ + G++I G
Sbjct: 198 KEYKKRIIMVTH--NMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGII--EGDIRIGGY 650
+ ++DI+ +TAL+G SG GK+T + D++ ++ G I EG +
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710
V R G Q P ++ +I + L+ + + E V E L L
Sbjct: 95 INVV-NLRREIGMVFQKPNPFPK-SIYNNITHA--LKYAGERRKSVLDEIVEESLTKAAL 150
Query: 711 -DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
D +KD L LS Q++RL IA L P+++ +DEP S LD + A +
Sbjct: 151 WDEVKDRL--HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203
|
Length = 268 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
LL DI+ T PG L+G +GAGK+TL+ +++G EG + G K+ + F +
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGSTVKIGY-FEQ 70
Query: 660 ISG 662
+SG
Sbjct: 71 LSG 73
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-----KTGGIIEGDIRIGGYPKVQHT 656
LS+I G L A++G +G GKT+L+ + G +I G + P+V
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--TVAYVPQVSWI 690
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKD 715
F N TV ++I+F + + +A V + ++ L G
Sbjct: 691 F---------------NATVRDNILFGS----PFDPERYERAIDVTALQHDLDLLPGGDL 731
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
+ +G GVN +S Q++R+++A + +N + D+P S LDA V
Sbjct: 732 TEIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
|
Length = 1622 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 13/184 (7%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKT-GGIIEGDIRIGGYPKVQ 654
++Q L +++ G + L+G +GAGKTTL+ L G R T G I+ I + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
++ E + S +TVEE++ + Q + + ++V E+ + I+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFFAERDQF--QERIKWVYELFPRLHERRIQ 133
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+ +S +++ L I L++ P ++ +DEP+ GL + ++ + E
Sbjct: 134 RA-------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 775 GRTV 778
G T+
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 6e-04
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 61/191 (31%)
Query: 602 LSDITGTFRPG-ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--------K 652
+ D++ R G I+ + G+ G G+T L + L G + G+I + G P
Sbjct: 16 VRDVSFEVRAGEIV-GIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDA 72
Query: 653 VQHTFARISGYCEQNDIHS----PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
++ A + D +++V E+I S+ L
Sbjct: 73 IRAGIAYVPE-----DRKREGLVLDLSVAENIALSSLL---------------------- 105
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
S G N Q+K + +A L +P ++ +DEPT G+D A A + R +
Sbjct: 106 -------S-----GGN-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI 147
Query: 769 KNVVETGRTVV 779
+ + + G+ V+
Sbjct: 148 RELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMDE-ISNGLDSSTT 96
+L+++GL+ + +SGGQ++R+ L P L +DE +S LD+
Sbjct: 114 LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREP-SLLLLDEPLSA-LDAKLR 166
Query: 97 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
++ LK L T + E L D + +M EG+IV G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-04
Identities = 68/300 (22%), Positives = 115/300 (38%), Gaps = 52/300 (17%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L+ IT + G L A++G G GK++L+ L +EG + + G A I
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI- 710
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIK 714
QND ++ E+I+F L ++ +VL+ L
Sbjct: 711 ----QND------SLRENILFGKAL----------NEKYYQQVLEACALLPDLEILPSGD 750
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV--KNVV 772
+ +G GVN LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 751 RTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP---LGQHSCKVIEYFECIPGVL 829
+T + H S + D++++ +GG+I G L Q E+
Sbjct: 810 LKNKTRILVTHGIS---YLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR------ 860
Query: 830 KIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTL---YQENKELVKQLSSPSLGSKD 886
Y P + + G E+ + K+L +QLS+ S S D
Sbjct: 861 ----TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGD 916
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 62 SGGQKKRLTTGELIVGPTRAL-------FMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
SGGQK+R+ L+ RAL +DE G+D + +I LK L T
Sbjct: 141 SGGQKQRV----LL---ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTV 192
Query: 115 LISL--LQPAPETFDLFDDVILMAEGKIVYHGP 145
L+ L FD VI + ++ GP
Sbjct: 193 LMVTHDLGLVM---AYFDRVICLN-RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 20 AYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT 79
A++K I ++ ++ + D +L+++ L A +G +SGG ++R+ + +VG
Sbjct: 97 AWLKGIPSKEVKA--RVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP 149
Query: 80 RALFMDEISNGLDSSTTFQIVSFLKHLVHI-TDATALISLLQPAPETFDLFD------DV 132
L +DE + GLD + + F L + D ++S T + D V
Sbjct: 150 SILIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILS-------THIVEDVESLCNQV 199
Query: 133 ILMAEGKIVYHG 144
++ +GK+V+ G
Sbjct: 200 AVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 9 LAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKR 68
L G +P ++ E+ + L++LGL+ AD V + +SGG+++R
Sbjct: 98 LLGRYP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQR 146
Query: 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL 128
+ + T L +DE ++ LD + +++ L+ L T ++ L +L
Sbjct: 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-----NL 201
Query: 129 F----DDVILMAEGKIVYHGP 145
D +IL+ +GKIV G
Sbjct: 202 AARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 118
+SGGQK+R+ +V + + DE + LDS + +V ++ L T LI
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI-- 197
Query: 119 LQPAPETFDLFDDVILMAEGKIV 141
+ D+ D ++ M +GK++
Sbjct: 198 VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 53 VGDPMRRGVSGGQKKRLTTGELIVGPTRA-------LFMDEISNGLDSSTTFQIVSFLKH 105
D +SGG +KR V RA LF+DE ++GLD + I ++
Sbjct: 138 AADLYPSELSGGMRKR-------VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRE 190
Query: 106 LVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147
L T ++ + + D V ++A+GK++ G
Sbjct: 191 LNDALGLTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPE 231
|
Length = 263 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 39 ILKILGLDICADTMVGDPMRRG------VSGGQKKRLTTGELIVGPTRALFMDEISNGLD 92
+L+++G+ DP RR +SGG ++R+ + + L DE + LD
Sbjct: 134 LLELVGIP--------DPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 93 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVILMAEGKIVYHGP 145
+ QI+ LK L TALI + T DL D V +M G+IV GP
Sbjct: 186 VTVQAQILDLLKELQREKG-TALILI------THDLGVVAEIADRVAVMYAGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 55 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
D + R SGG ++RL +V R +FMDE + GLD S +++ L+ LV
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 115 LISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I A L D +++M +G++V G
Sbjct: 206 VIVTHDLAVARL-LADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI--SL 118
+SGGQK+R+ ++ ++ L +DE ++ LD+ T +IV +L+++ D T +
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV---NNLLNLQDKTIIFVAHR 668
Query: 119 LQPAPETFDLFDDVILMAEGKIVYHG 144
L A ++ D +I++ GKI+ G
Sbjct: 669 LSVAKQS----DKIIVLDHGKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
++LVG + LS Q++R++IA ++ NP I+ +DE TS LD ++ V + + N+
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 673 NITVEESIVFSAWLRLSTQIDSKTKAEF--VNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730
N+++ E+I F +T+ D K +F ++E +++ L D+ VG P LS Q
Sbjct: 1309 NMSIYENIKFGK--EDATREDVKRACKFAAIDEFIES--LPNKYDTNVG-PYGKSLSGGQ 1363
Query: 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIHQPSIDI 789
++R+ IA L+ P I+ +DE TS LD+ + + + + ++ + +T++ H+ I
Sbjct: 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR--IAS 1421
Query: 790 FEAFDDLVLMKNGGR 804
+ D +V+ N R
Sbjct: 1422 IKRSDKIVVFNNPDR 1436
|
Length = 1466 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 34/231 (14%)
Query: 542 PTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDL--RYYVDIPSAMRKNGFNQ-TR 598
P PL + P + E P + ++ EP+ + +L R+ +R N+ TR
Sbjct: 284 PRRFPLISLEHPAKQE-PPIEQDTVVDGEPI-LQVRNLVTRF------PLRSGLLNRVTR 335
Query: 599 -LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--------KTGGIIEGDIRIGG 649
+ + ++ PG +L+G SG+GK+T +GR + G II RI
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDT 390
Query: 650 YPKVQ-HTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
+ R + Q+ S P TV +SI+ LR+ + K A V +L+
Sbjct: 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP--LRVHGLLPGKAAAARVAWLLE 448
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
+ L + + P + S QR+R+ IA L NP +I DE S LD
Sbjct: 449 RVGL--LPEHAWRYP--HEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 78/223 (34%)
Query: 580 RYYVDIPSAMRKNGFNQTRL-QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 638
++Y +++ F RL + L ++ T G A++G SG GK+TL +L+
Sbjct: 13 KHY-----PVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT----- 62
Query: 639 GIIE----GDIRIGGYP--------------KVQHTFARISGYCEQNDIHSPN------I 674
+IE G++ G K+Q F QN S N
Sbjct: 63 -MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVF--------QNPYGSLNPRKKVGQ 113
Query: 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE----- 729
+EE L ++T + + + E ++ + GL E
Sbjct: 114 ILEEP------LLINTSLSAAERREKALAMMAKV----------------GLRPEHYDRY 151
Query: 730 -------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
QR+R+ IA L+ +P ++ DEP S LD A V+
Sbjct: 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194
|
Length = 327 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 48/171 (28%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYC--EQNDI 669
G +TAL+G SG GK+T++ L+ + +IEG + G + D+
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLN--RMNDLIEG--------------CSLKGRVLFDGTDL 82
Query: 670 HSPNI---------------------TVEESIVFSAWLR-LSTQIDSKTKAEFVNEVL-Q 706
+ P + ++ E+I F A + + +D E V L +
Sbjct: 83 YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMD-----ELVERSLRK 137
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
D KD L LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 AAVWDECKDKLN--ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
+L+ +GL AD G+ +S GQ++RL + + L +DE + GL+ T +
Sbjct: 133 LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187
Query: 99 IVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ ++ L T L+ L+ L D ++++ G+++ G
Sbjct: 188 LAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 27 AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86
A E + + ++++LG+ + G +SGG+K+R+ G ++ R L MDE
Sbjct: 103 ARPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDE 157
Query: 87 ISNGLDSSTTFQIVSFLKHLVHITDATAL-IS-LLQPAPETFDLFDDVILMAEGKIVYHG 144
LD ++I+ +L+ L L +S LQ E L D V+++ +G++ G
Sbjct: 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAG 214
Query: 145 PL 146
P+
Sbjct: 215 PI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 46 DICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKH 105
D D + P R +SGGQ++ L + L +DE ++ LD +TT +I F++
Sbjct: 151 DAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 106 LVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
L D +I + + + D L +G++V GP
Sbjct: 209 L---ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245
|
Length = 276 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 28/241 (11%)
Query: 582 YVDIPSAMRKNGFNQTRLQL-------LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634
++++P R+ L + +I+ R G + L GV GAG+T L + L G
Sbjct: 252 WLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYG 311
Query: 635 ---RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW------ 685
+ G I+ I AR Y + D S + ++ + AW
Sbjct: 312 LRPARGGRIMLNGKEINAL-STAQRLARGLVYLPE-DRQSSGLYLDAPL---AWNVCALT 366
Query: 686 -LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744
R I + + + + IK + LS ++++ IA L A+P
Sbjct: 367 HNRRGFWIKPARENAVLERYRRAL---NIKFNHAEQA-ARTLSGGNQQKVLIAKCLEASP 422
Query: 745 SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804
++ +DEPT G+D A + + ++++ V I ++ E D VL+ + G
Sbjct: 423 QLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-VAVLFI-SSDLEEIEQMADRVLVMHQGE 480
Query: 805 I 805
I
Sbjct: 481 I 481
|
Length = 510 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 612 GILTALMGVSGAGKTTLM-------DVLSGRKTGGIIE---GDIRIGGYPKVQHTFARIS 661
+T +G SG GK+T++ D++ G + G + D+ G V R
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV--VVRRYI 91
Query: 662 GYCEQNDIHSPN---ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSL 717
G Q PN +++ +++ F LRL+ + V LQ L D +KD L
Sbjct: 92 GMVFQQ----PNPFSMSIFDNVAFG--LRLNRY--KGDLGDRVKHALQGAALWDEVKDKL 143
Query: 718 VGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
V+GLS Q++RL IA + P ++ +DEP S LD A V
Sbjct: 144 ----KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHTFA---------RISGYC 664
LMG+SG+GK+TL+ ++G + G + + G V + A R+S
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNP--VSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVF 112
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724
+Q + P TVEE++ F L + + + + V+E L+ + L D G
Sbjct: 113 QQFAL-LPWRTVEENVAFG--LEMQG-MPKAERRKRVDEQLELVGLAQWADRKPG----- 163
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMRAVKNVVETGRTVVCTI 782
LS ++R+ +A I+ MDEP S LD R + ++E + TI
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT-----QLQDELLELQSKLKKTI 218
Query: 783 HQPSIDIFEAF---DDLVLMKNGGRIIYFG 809
S D+ EA + + +M+ GGRII G
Sbjct: 219 VFVSHDLDEALKIGNRIAIME-GGRIIQHG 247
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 762
+ I + + L+ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 763 TVMRAV------KNVVETGRTVVCTIHQPSI----DIFEAFDDLVLMKNG 802
++ E TV+ T + + FD +++
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 37/184 (20%)
Query: 588 AMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIEGD 644
++ G+ ++L++I+ + R G + G SG GK+TL+ + L +G ++
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 645 IRIGGYPKVQHTFARISGYCEQNDIHSPNI---TVEESIVFSAWLRLSTQIDSKTKAEFV 701
I + + YC Q +P + TV ++++F +R
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR-------------- 108
Query: 702 NEVLQTIELDGIKDSLV--GLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
Q + D L LP + LS +++R+++ L P ++ +DE T
Sbjct: 109 ---NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 754 SGLD 757
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 94
Q D ++ +LG++ D P +SGG+K+R+ G ++ L MDE LD
Sbjct: 108 QFDQLVALLGIEHLLDRY---PGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162
Query: 95 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146
+I+ +L+ L + ++ + E L D V+++ GK+ GPL
Sbjct: 163 RKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 52 MVG-----DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106
MVG D M +SGGQ++R+ + + + DE+++ LD ++++ ++ L
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 107 VHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGV 166
D T L+ + + D V +G+IV G FR P +
Sbjct: 193 ASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGK--------PDEIFRQPKEERT 243
Query: 167 ADFLQEVI 174
+FL +VI
Sbjct: 244 REFLSKVI 251
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
E DGI P LS + +R+ IA L+ N + DEP++ LD RA
Sbjct: 56 DEWDGITPVYK--PQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARA 113
Query: 768 VKNVVETGRTVV 779
++ + E G+
Sbjct: 114 IRRLSEEGKKTA 125
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 17/84 (20%), Positives = 35/84 (41%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGG ++R+ I L +DE + LD++ + + L ++ +
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
+ L D +M +G++ HG
Sbjct: 198 DQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 20 AY--MKAISAEGLENSLQTDYILKIL-GLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76
AY + +E +L Y + L + DT +G+ +SGGQ++RL ++
Sbjct: 427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALL 485
Query: 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDD 131
L +DE ++ LD+ + + + L+ L+ T L+ S ++ A D
Sbjct: 486 KDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKA-------DR 536
Query: 132 VILMAEGKIVYHGP 145
+++M +G+IV G
Sbjct: 537 IVVMDDGRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1174 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.98 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.98 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.91 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.91 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.91 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.91 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.91 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.9 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.89 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.89 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.89 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.89 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.88 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.87 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.87 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.87 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.86 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.86 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.86 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.85 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.85 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.84 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.84 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.84 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.83 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.83 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.83 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.82 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.82 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.82 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.82 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.82 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.82 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.82 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.81 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.81 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.81 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.81 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.81 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.8 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.8 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.8 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.8 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.8 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.8 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.79 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.79 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.79 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.79 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.79 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.79 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.79 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.79 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.79 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.79 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.78 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.78 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.78 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.78 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.78 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.78 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.78 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.78 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.78 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.78 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.78 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.78 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.78 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.78 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.78 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.78 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.78 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.78 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.78 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.78 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.77 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.77 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.77 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.77 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.77 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.77 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.77 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.77 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.77 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.77 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.77 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.77 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.77 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.77 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.77 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.76 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.76 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.76 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.76 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.76 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.76 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.76 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.76 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.76 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.76 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-191 Score=1726.53 Aligned_cols=1118 Identities=50% Similarity=0.881 Sum_probs=1023.5
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv 114 (1174)
.+|.++++|||+||+||+|||++.||+|||||||||||+++|++|+++|+||+|+||||.++.++++.||+++|..+.|+
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCC
Q 001048 115 LISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVS 194 (1174)
Q Consensus 115 I~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~ 194 (1174)
+++||||+++++++||+|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.+.|..++.++...+
T Consensus 315 ~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~ 394 (1391)
T KOG0065|consen 315 LVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTS 394 (1391)
T ss_pred EEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888888877777878788
Q ss_pred HHHHHHHHHhcccchhhHHHHHhhhccccccccccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 001048 195 VDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVT 274 (1174)
Q Consensus 195 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~ 274 (1174)
.+++.+.|++++.+..+..+++.+.++.+.++......+|..++|+|++.|++|.+..++||..++...+++.+++++++
T Consensus 395 ~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~ 474 (1391)
T KOG0065|consen 395 VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALIT 474 (1391)
T ss_pred HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHH
Confidence 89999999999999888888888777777777777888999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHH
Q 001048 275 MTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFV 354 (1174)
Q Consensus 275 g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~ 354 (1174)
|++||+... .+..+.+.+.|++||++++.++++++++...+.++|+++|||...+|+||++.++..++++|+.++..++
T Consensus 475 gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~v 553 (1391)
T KOG0065|consen 475 GSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVV 553 (1391)
T ss_pred hhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHH
Confidence 999998763 4445678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehh
Q 001048 355 WTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWG 434 (1174)
Q Consensus 355 ~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~ 434 (1174)
|.+|+||++|+.+++++||.++++++++.++++++++++++++++..+|+.+|++.++++.+++||+||..+||+||+|+
T Consensus 554 f~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi 633 (1391)
T KOG0065|consen 554 FVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWI 633 (1391)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHhcCCCcccccc------------CC----CccchhhhhhhcCCc-----cCCcchhHHHHHHHH
Q 001048 435 FWVCPLTYGEIGLTVNEFLAPRWEKVI------------SG----NTTAGMQTLESRGLN-----FDSSFYWISIGALIG 493 (1174)
Q Consensus 435 ~~is~~~y~~~~l~~nef~~~~~~~~~------------~~----~~~~g~~~l~~~g~~-----~~~~~~w~~ig~Li~ 493 (1174)
+|++|+.|++++++.|||++.+|.|.. .. ..+.|..+++.+++. +...|+|+++|++++
T Consensus 634 ~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillg 713 (1391)
T KOG0065|consen 634 AYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLG 713 (1391)
T ss_pred HHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHH
Confidence 999999999999999999999998871 11 134577788877776 778899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCcc-ccccccCCCCcc
Q 001048 494 FTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPL-AHRKMILPFEPL 572 (1174)
Q Consensus 494 f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 572 (1174)
|.+++..+..+++.+.++....++....++..+...... .......+.. .+... ..++...|.++.
T Consensus 714 f~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~---------~~s~~~~~~~~~~~~~~~ 780 (1391)
T KOG0065|consen 714 FTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS----AGSSSEIEKL---------DDSSHQEKNKMVLPFTPL 780 (1391)
T ss_pred HHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh----cccccccccc---------ccccccccccccCCCccc
Confidence 999999999999999998877666544433222111000 0000000000 00000 122344566677
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||.+.++.+-+.+..+ +++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|++||.|.
T Consensus 781 ~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~ 857 (1391)
T KOG0065|consen 781 SLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPK 857 (1391)
T ss_pred cccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeC
Confidence 788888888777765554433 56899999999999999999999999999999999999998889999999999998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
++..++|.+|||.|+|.|.+.+||||.|.|+|.+|++.+++.+++.+.|+++++.++|++++|.+||.|| +|||.+|||
T Consensus 858 ~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRK 936 (1391)
T KOG0065|consen 858 DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRK 936 (1391)
T ss_pred chhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhc
Confidence 8788999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHhhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANP-SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++||.+|+.|| .||+|||||||||+.++..|++.+|+++++|+||+||+||||.++++.||++++|.+||++||.||+
T Consensus 937 rLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 937 RLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred eeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHHHHHHHHHHHhhcCCCCC-CCCCCCC
Q 001048 812 GQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLG-SKDLHFP 890 (1174)
Q Consensus 812 ~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 890 (1174)
+++++++++||++++|. +||+..|||||++|+++...+.....||++.|++|++++++++.+++++.++++ .++....
T Consensus 1017 G~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~ 1095 (1391)
T KOG0065|consen 1017 GENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFK 1095 (1391)
T ss_pred ccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccc
Confidence 99999999999999876 677777999999999998887777889999999999999999999999888877 6666777
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHH
Q 001048 891 THFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCS 970 (1174)
Q Consensus 891 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 970 (1174)
++|++|+|.|++.+++|++..+||+|.++.+|++..++.||++|+.||++| .+.+|++|.+|++|+++++.+..+..
T Consensus 1096 ~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1096 TRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 789999999999999999999999999999999999999999999999998 46899999999999999999888877
Q ss_pred hHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 001048 971 LVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYM 1050 (1174)
Q Consensus 971 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~ 1050 (1174)
...+.+..||.+++||+++|+||+.+|.+|++++|+|+.++++++|.+|+|+++||.+++.+|++|++.+++..++.+.+
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccccC------
Q 001048 1051 GMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFG------ 1124 (1174)
Q Consensus 1051 ~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~~~------ 1124 (1174)
|+|+.+++||.++|+.+.++++.++.+|||+++|++.||.||+|+||+||+.|..++++..+++|.+..|...+
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p 1332 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP 1332 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887775322
Q ss_pred -CcccHHHHHhhhcC----CCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1125 -KAKTVSAFLDDYFG----FDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1125 -~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
...++++|+.+.+| |.++.......+.+++.+++.+++.+.++|.++++|
T Consensus 1333 p~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1333 PSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 12789999999999 877777777778888999999999999999999986
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-186 Score=1811.36 Aligned_cols=1167 Identities=56% Similarity=1.028 Sum_probs=1009.9
Q ss_pred hhcCCCCCccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 8 KLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
|..+..|+.+++..|+....++.+.+..++++|+.+||++|+||+||+...|||||||||||+||++|+++|++||||||
T Consensus 284 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEP 363 (1470)
T PLN03140 284 KDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEI 363 (1470)
T ss_pred HhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCC
Confidence 33445555566666665555555555678999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChh
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVA 167 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~a 167 (1174)
|||||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++|||
T Consensus 364 TsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~A 443 (1470)
T PLN03140 364 STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTA 443 (1470)
T ss_pred CcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChH
Confidence 99999999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhccccccccccccccccccHHHHHHHHHH
Q 001048 168 DFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWELLKTCAT 247 (1174)
Q Consensus 168 dfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~ 247 (1174)
||+++++++.++.+.+.....++...+.+++.++|+++..+....+++..+.++...++......+|..+++.|++.|++
T Consensus 444 DFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 523 (1470)
T PLN03140 444 DFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523 (1470)
T ss_pred HHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHH
Confidence 99999998766655443333444456788999999988776666555554433332223333445688999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcc-hhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhh
Q 001048 248 REFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVD-IIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHR 326 (1174)
Q Consensus 248 R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~-~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer 326 (1174)
|+++..+||+..+..++++.+++|+++|++||+.+.+.. ..+.+.+.|.+||++++.+++++.++..++.+|++|+|||
T Consensus 524 R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker 603 (1470)
T PLN03140 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQR 603 (1470)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhh
Confidence 999999999999999999999999999999998764432 2345667899999999888999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 001048 327 DLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAI 406 (1174)
Q Consensus 327 ~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 406 (1174)
..++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.+++.++++++++++++..+|+.+
T Consensus 604 ~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 683 (1470)
T PLN03140 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTG 683 (1470)
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCccccccC--CCccchhhhhhhcCCccCCcch
Q 001048 407 GTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVIS--GNTTAGMQTLESRGLNFDSSFY 484 (1174)
Q Consensus 407 ~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~~--~~~~~g~~~l~~~g~~~~~~~~ 484 (1174)
++++++++++|+||+++.++||+||+|++|+||++|+++++++|||.+..|.+..+ .+...|..+|+.+|+..+..|+
T Consensus 684 ~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~ 763 (1470)
T PLN03140 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWY 763 (1470)
T ss_pred HHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccch
Confidence 99999999999999999999999999999999999999999999998877654322 2457899999999998888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCC----CCCCCCC--CCC--CCCccCC-----
Q 001048 485 WISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV----GSDRDRS--PTD--APLKAAT----- 551 (1174)
Q Consensus 485 w~~ig~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~----- 551 (1174)
|.+++++++|.++|.+++++++.+.++.....+....++..+........ +.+.... ... .+.....
T Consensus 764 w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1470)
T PLN03140 764 WIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNR 843 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887554433332211111000000000 0000000 000 0000000
Q ss_pred CCC-C-CCCccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHH
Q 001048 552 GPK-R-GERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM 629 (1174)
Q Consensus 552 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl 629 (1174)
... . .......++..+|..+..++|+||+|.++.+...++.+...+++++|+|||++++|||++||+|||||||||||
T Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL 923 (1470)
T PLN03140 844 DSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM 923 (1470)
T ss_pred ccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH
Confidence 000 0 00001112334567788999999999998776544444444556899999999999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC
Q 001048 630 DVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709 (1174)
Q Consensus 630 ~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 709 (1174)
|+|+|+.++++.+|+|.+||++.....+++.+|||+|+|.+++.+||+|||.|++.++.+...+.+++.++++++++.++
T Consensus 924 ~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 924 DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred HHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 99999977666899999999886544556779999999999999999999999988776655566667788999999999
Q ss_pred CCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH
Q 001048 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDI 789 (1174)
Q Consensus 710 l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~ 789 (1174)
|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+|||+++|||+.++
T Consensus 1004 L~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i 1083 (1470)
T PLN03140 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1083 (1470)
T ss_pred ChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH
Confidence 99999999998887899999999999999999999999999999999999999999999999988999999999998778
Q ss_pred HHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHHHHH
Q 001048 790 FEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQE 869 (1174)
Q Consensus 790 ~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~ 869 (1174)
++.||++++|.+||+++++|++++.++++++||++++|.++||+++|||||++|+++.+.+.....||++.|++|+++++
T Consensus 1084 ~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~ 1163 (1470)
T PLN03140 1084 FEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQR 1163 (1470)
T ss_pred HHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHH
Confidence 89999999998779999999998877899999999877767999999999999998866555556689999999999998
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 001048 870 NKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQD 949 (1174)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~ 949 (1174)
+++.+++...+.+..++....++++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++..++++
T Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~ 1243 (1470)
T PLN03140 1164 NKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNAND 1243 (1470)
T ss_pred HHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhh
Confidence 88777766555444444334567889999999999999999999999999999999999999999999999987777889
Q ss_pred hhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 001048 950 VFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWS 1029 (1174)
Q Consensus 950 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~ 1029 (1174)
++++.|++|+++++.++.++.+++|.+..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1244 ~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~ 1323 (1470)
T PLN03140 1244 LTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWT 1323 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHH
Q 001048 1030 GYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGML 1109 (1174)
Q Consensus 1030 ~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~ 1109 (1174)
+++||+|+++++++.++++++|+++++++||.++|..+++++++++++|+||++|+++||+||+|++|+||++|+++|++
T Consensus 1324 ~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~ 1403 (1470)
T PLN03140 1324 AAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLI 1403 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcccccccCC--cccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1110 SSQYGDIDKEISAFGK--AKTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1110 ~nef~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
+|||+|.+.+|.++|. ..++.+|++++|||+++++|++++|+++|+++|+++++++++++|||||
T Consensus 1404 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1404 VSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999998877776662 2578999999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-167 Score=1642.39 Aligned_cols=1110 Identities=31% Similarity=0.539 Sum_probs=926.7
Q ss_pred HHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEE
Q 001048 36 TDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATAL 115 (1174)
Q Consensus 36 v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI 115 (1174)
++++|+.+||++++||+||++..|||||||||||+||++|+++|+||||||||||||+.++..+++.|+++++..|+|+|
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999976789999
Q ss_pred EEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCH
Q 001048 116 ISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSV 195 (1174)
Q Consensus 116 ~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~ 195 (1174)
+++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||+++|||||+++++++.++. .....+. ....+.
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~~e~-~~~~~~ 342 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPGYEK-KVPRTP 342 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccccccc-cCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999998865432 1111111 123467
Q ss_pred HHHHHHHHhcccchhhHHHHHhhhccc---------------cccccccccccccccHHHHHHHHHHHHHHHhhcChHHH
Q 001048 196 DQFITKFKACHLGLMQDEELARSFNKS---------------ERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLY 260 (1174)
Q Consensus 196 ~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~ 260 (1174)
+++.+.|+++..+....+++....++. +..+......++..++++|+..|++|+++..+||+..+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 422 (1394)
T TIGR00956 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT 422 (1394)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999988776554444433221110 00001122345778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHH
Q 001048 261 VFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPA 340 (1174)
Q Consensus 261 ~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~ 340 (1174)
.+++++.+++|+++|++||+.+ .+..+.+++.|++|+++.+..+.++.++..++.+|++|+|||..++|++++|++|+
T Consensus 423 ~~r~~~~ii~~li~G~~F~~~~--~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 423 LFMVFGNIIMALILSSVFYNLP--KNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHH
Confidence 9999999999999999999765 44557788999999999999998888888888999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcc
Q 001048 341 SILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420 (1174)
Q Consensus 341 ~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf 420 (1174)
+++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.+++.++++++++++|+..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcccccc--C-----------C------------Cccchhhhhhhc
Q 001048 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVI--S-----------G------------NTTAGMQTLESR 475 (1174)
Q Consensus 421 ~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~--~-----------~------------~~~~g~~~l~~~ 475 (1174)
+++.++||+||+|++|+||++|++++++.|||.+..+.|.. + + +...|+++|+.
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~- 659 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL- 659 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-
Confidence 99999999999999999999999999999999998876631 0 0 13478888885
Q ss_pred CCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhh--hhhhhccccC-----CCCCCCCCCCCCCCc
Q 001048 476 GLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEK--YLELQDQKDC-----VGSDRDRSPTDAPLK 548 (1174)
Q Consensus 476 g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~ 548 (1174)
++.+..++.|.+++++++|.+++.++..+++.+.++...........+ .......... .+.++.......+.
T Consensus 660 ~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~- 738 (1394)
T TIGR00956 660 SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDL- 738 (1394)
T ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCcc-
Confidence 455566789999999999999999999999988775443322211111 0000000000 00000000000000
Q ss_pred cCCCCCCCCCccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHH
Q 001048 549 AATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTL 628 (1174)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTL 628 (1174)
+.+............+.....++|+||++.+..+ .+++.+|+|||++++|||++||+||||||||||
T Consensus 739 ----~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTL 805 (1394)
T TIGR00956 739 ----TDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTL 805 (1394)
T ss_pred ----ccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 0000000000000001123458999999976421 234679999999999999999999999999999
Q ss_pred HHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Q 001048 629 MDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707 (1174)
Q Consensus 629 l~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (1174)
||+|+|+.+++ +.+|+|.+||++... .+++.+|||+|+|.+++.+||+||+.|++.++.+...+++++.++++++++.
T Consensus 806 L~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~ 884 (1394)
T TIGR00956 806 LNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKL 884 (1394)
T ss_pred HHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 99999987643 467999999998753 4677899999999999999999999999888766555666777889999999
Q ss_pred cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 708 l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~-illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++|.+++|+.+|.++. +|||||||||+||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+
T Consensus 885 l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 885 LEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred cCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 9999999999987654 799999999999999999997 99999999999999999999999999888999999999998
Q ss_pred HHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHH
Q 001048 787 IDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTL 866 (1174)
Q Consensus 787 ~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~ 866 (1174)
..+++.+|++++|.+||+++++|++++.++++++||+++ |.++||+++|||||++|+++...+.....+|.+.|+.|+.
T Consensus 964 ~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~ 1042 (1394)
T TIGR00956 964 AILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSE 1042 (1394)
T ss_pred HHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHH
Confidence 667788999999987679999999988778899999998 5557999999999999998765443334689999999988
Q ss_pred HHHHHHHHHhhcCCCCCC---CCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 001048 867 YQENKELVKQLSSPSLGS---KDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKK 943 (1174)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 943 (1174)
+++..+.++....+.... .+.....++++|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~- 1121 (1394)
T TIGR00956 1043 YQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT- 1121 (1394)
T ss_pred HHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 877665554433221111 1111224678999999999999999999999999999999999999999999999975
Q ss_pred CcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001048 944 IKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVL-YRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYP 1022 (1174)
Q Consensus 944 ~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~ 1022 (1174)
+++++++|+|++|+++++.++. +...+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+||
T Consensus 1122 --~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~ 1198 (1394)
T TIGR00956 1122 --SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYY 1198 (1394)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 4678999999999988877766 345667788888886 899999999999999999999999999999999999999
Q ss_pred cccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhh
Q 001048 1023 MIGYHWSGYK-------IFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWA 1095 (1174)
Q Consensus 1023 ~~gl~~~~~~-------f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1095 (1174)
|+||++++.. |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||++|+++||.||+|+
T Consensus 1199 ~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~ 1278 (1394)
T TIGR00956 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFM 1278 (1394)
T ss_pred cccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHH
Confidence 9999988766 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcccccc-------------------------------cC---Cc-----ccHHHHHhhh
Q 001048 1096 YYLCPTSWVLKGMLSSQYGDIDKEISA-------------------------------FG---KA-----KTVSAFLDDY 1136 (1174)
Q Consensus 1096 ~y~sp~~y~~~~l~~nef~~~~~~~~~-------------------------------~~---~~-----~~~~~~~~~~ 1136 (1174)
+|+||++|+++|++.|||++.+..|.. |+ .| .++.+|+ ..
T Consensus 1279 ~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~ 1357 (1394)
T TIGR00956 1279 YRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EP 1357 (1394)
T ss_pred HhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HH
Confidence 999999999999999999988754421 00 01 1445554 56
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001048 1137 FGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQR 1173 (1174)
Q Consensus 1137 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1173 (1174)
+|++.++.|+|++|+++|++++ +++++++.+..+.+
T Consensus 1358 ~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1358 ISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred cCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 8999999999999999999888 88888888865544
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-97 Score=910.71 Aligned_cols=584 Identities=24% Similarity=0.428 Sum_probs=483.0
Q ss_pred CccEEEEeceEEEEeeCCc----------------ccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 570 EPLTVTFEDLRYYVDIPSA----------------MRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
.++.++|.|++|++...+. .++.....+++++|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4678999999998865431 011111233578999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc
Q 001048 634 GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713 (1174)
Q Consensus 634 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 713 (1174)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+||+.+++.++.+...+.+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987643468999999998653 2345689999999999999999999998877655444556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 714 ~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
.|+.+|+...++|||||||||+||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987778999999999999999999999999999999999999999999999998889999999999986788999
Q ss_pred cceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchh------c---hhhhHHHHHhhc
Q 001048 794 DDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMET------Q---LGVDFAQIYRES 864 (1174)
Q Consensus 794 d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~s 864 (1174)
|++++|. +|++++.|++ +++.+||+++| + +||+++|||||++|+++.+.+. . ......+.|++.
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999997 5899999997 56899999994 4 7999999999999998753210 0 011223344321
Q ss_pred HHHHHHHHHHHh--hcCCCC------CCCCC-CCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 001048 865 TLYQENKELVKQ--LSSPSL------GSKDL-HFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGI 935 (1174)
Q Consensus 865 ~~~~~~~~~~~~--~~~~~~------~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 935 (1174)
. .++..+..+. ...... ..+.. .....+.++||+|+++|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000000 00000 011224578999999999999988 89999999999999999999999
Q ss_pred hhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001048 936 LFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVI 1015 (1174)
Q Consensus 936 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~ 1015 (1174)
+||+++ ..++++|.|++||++++.++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999874 457899999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhh
Q 001048 1016 YVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWA 1095 (1174)
Q Consensus 1016 ~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1095 (1174)
|++|+|||+||++++.+||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcc-----cccccC-CcccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001048 1096 YYLCPTSWVLKGMLSSQYGDIDK-----EISAFG-KAKTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGEL 1169 (1174)
Q Consensus 1096 ~y~sp~~y~~~~l~~nef~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1169 (1174)
+|+||++|+||++++|||++.+. +|..+. .......+ ....+++....|.|+++|++++++|++++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 342111 00011111 222344456789999999999999999999999988
Q ss_pred cc
Q 001048 1170 NF 1171 (1174)
Q Consensus 1170 ~~ 1171 (1174)
+|
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 76
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-97 Score=902.57 Aligned_cols=580 Identities=32% Similarity=0.553 Sum_probs=505.2
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEEC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIG 648 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~ 648 (1174)
.++.++|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567999999987654321 3578999999999999999999999999999999999998763 689999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 649 GYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 649 g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
|++...+.+++.+|||.|+|.+++++||+|++.|.+.+|++...++++++++|+++++++||.+++|+++|.++.|++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877778889999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.++++.||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred cCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCc-chhchhhhHHHHHhhc------HHHHHHHHHHHhhcCCC
Q 001048 809 GPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNS-METQLGVDFAQIYRES------TLYQENKELVKQLSSPS 881 (1174)
Q Consensus 809 G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s------~~~~~~~~~~~~~~~~~ 881 (1174)
|++ +++.+||++. |. +||++.|||||++|+.+.+ ..+. ..+..+.++.. ...++..+ ......
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 322 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLE---ALEKSL 322 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHH---HHhhhc
Confidence 998 5689999999 44 6999999999999998853 1110 01111111111 00011100 000000
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHH
Q 001048 882 LGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961 (1174)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 961 (1174)
..... .+.....+||.|++.|++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+
T Consensus 323 ~~~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 323 STSKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ccccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 00001 111126899999999999999999999999999999999999999999999965 4566779999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHH
Q 001048 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMF 1041 (1174)
Q Consensus 962 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~ 1041 (1174)
.++.+.++...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99989988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCccccc
Q 001048 1042 CNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEIS 1121 (1174)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~ 1121 (1174)
+..++++++|++++++.||...|+.+++++++++++|+||+++.+++|.||+|++|+|+++|++||+++|||.+....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987333332
Q ss_pred ccC--Cc-ccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1122 AFG--KA-KTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1122 ~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
..+ .+ .++.+ ++.+.+++.++.|.|+.+++++.++|++++|++|++..+.+|
T Consensus 558 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 558 LSGNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCcCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 221 22 33444 566789999999999999999999999999999999777654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-96 Score=905.75 Aligned_cols=566 Identities=31% Similarity=0.485 Sum_probs=497.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
++++|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999987643 3589999999987655667789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC-CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+|||.|++.++.+....+++++++++++++.+||.+++|+.+|+++ .++|||||||||+||++|+++|++++|||||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988877666677778889999999999999999999754 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNY 835 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~ 835 (1174)
||+.++..+++.|++++++|+|||+++|||+.++.+.||+++++. +|++++.|++ +++.+||++++ .+||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 999999999999999988899999999999878999999999997 5999999998 46889999994 4799999
Q ss_pred CCCccchhccCCcchhc-----hhhhHHHHHhhcHHHHHHHHHHHhhcCCCC---CCCCCCCCCCCCCchHHHHHHHHHH
Q 001048 836 NPATWMLEVSSNSMETQ-----LGVDFAQIYRESTLYQENKELVKQLSSPSL---GSKDLHFPTHFPQNGWEQFKACMWK 907 (1174)
Q Consensus 836 npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R 907 (1174)
|||||++|+++.+.+.. ...++.+.|+.++.+++..+..+....... ..........+..++|+|+++|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543211 123456677777666555433332111110 1111112235678999999999999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHh
Q 001048 908 HNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRER 987 (1174)
Q Consensus 908 ~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 987 (1174)
++++.||||.++.+|+++++++|+++|++||+++. ++++++++.|++|+++++.++.++...++.++.||++|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999975 457899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 001048 988 FAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASIL 1067 (1174)
Q Consensus 988 ~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 1067 (1174)
.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcc-ccccc---CCc-ccHHHHHhhhcCCCcc
Q 001048 1068 ASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDK-EISAF---GKA-KTVSAFLDDYFGFDHD 1142 (1174)
Q Consensus 1068 ~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~ 1142 (1174)
++++++++++|+||+++.++||+||+|++|+||++|++++++.|||++... +|... +.+ .++ +++++.||++.+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~~ 585 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999988764 44211 112 344 677789999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1143 FLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1143 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
+.|+++++|+++.++|++++|++||+-.+.+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-93 Score=944.53 Aligned_cols=591 Identities=24% Similarity=0.381 Sum_probs=506.2
Q ss_pred CccEEEEeceEEEEeeCCcc--cc---------------c--ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHH
Q 001048 570 EPLTVTFEDLRYYVDIPSAM--RK---------------N--GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~--~~---------------~--~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~ 630 (1174)
+.+.+.|+|++......... +. . +.+.+++++|+|+|+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 45679999999866322110 00 0 11223467999999999999999999999999999999
Q ss_pred HHhCCCCC--CeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC----CCCHHHHHHH-H
Q 001048 631 VLSGRKTG--GIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST----QIDSKTKAEF-V 701 (1174)
Q Consensus 631 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-~ 701 (1174)
+|+|+.++ .+.+|+|.+||++... ...++.++||+|+|.+++.+||+||+.|++.++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998632 2579999999998643 234567999999999999999999999998876542 2233443333 4
Q ss_pred HHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEE
Q 001048 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVC 780 (1174)
Q Consensus 702 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~ 780 (1174)
+++++.+||.+++|+++|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|+|+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999874 999999
Q ss_pred EecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcch----------
Q 001048 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSME---------- 850 (1174)
Q Consensus 781 ~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~---------- 850 (1174)
++|||+.++.+.+|++++|. +|+++++|++ .++.+||+++ |+ +||++.|||||++|+++++.+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 99999878999999999997 5999999997 5689999999 44 799999999999999875421
Q ss_pred hchhhhHHHHHhhcHHHHHHHHHHHhhcCCC---------------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcC
Q 001048 851 TQLGVDFAQIYRESTLYQENKELVKQLSSPS---------------LGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRN 915 (1174)
Q Consensus 851 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 915 (1174)
.....++++.|++|+.+++..+.++...... ..++.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 1124578999999998876665544321110 0001112234578899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChH
Q 001048 916 PSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPW 995 (1174)
Q Consensus 916 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 995 (1174)
|.++.+|+++++++|+++|++||+++. +++++++|.|++||++++.++.++..+ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999975 457899999999999999999887665 4566799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 001048 996 AYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSML 1075 (1174)
Q Consensus 996 ~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1075 (1174)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccc------------------------cCCc-ccHH
Q 001048 1076 NLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISA------------------------FGKA-KTVS 1130 (1174)
Q Consensus 1076 ~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~------------------------~~~~-~~~~ 1130 (1174)
++|+||++|.++||+||+|++|+||++|+|||+++|||++..++|.. +|++ +++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999987766630 1112 4677
Q ss_pred HHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001048 1131 AFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNF 1171 (1174)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1171 (1174)
+|+...||++++|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-92 Score=927.41 Aligned_cols=593 Identities=26% Similarity=0.411 Sum_probs=498.5
Q ss_pred CCccEEEEeceEEEEeeCCcccc--------------c----c---cccccccccccceeEEeCCeEEEEecCCCCCHHH
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRK--------------N----G---FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTT 627 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~--------------~----~---~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKST 627 (1174)
.+.+.+.|+|+++........+. . + .++.++++|+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34678999999987663211100 0 1 1223567999999999999999999999999999
Q ss_pred HHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCC-------CCHHHH--
Q 001048 628 LMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ-------IDSKTK-- 697 (1174)
Q Consensus 628 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~-- 697 (1174)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+|||.|++.++.... ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987632 3489999999987554446779999999999999999999999987653211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 698 ----------------------AEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 698 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+..++++++.+||++++||.+|+...++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235779999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCC
Q 001048 756 LDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDN 834 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 834 (1174)
||+.++.++++.|+++++ .|+|+|+++|||+.++++.||++++|. +|+++|+||+ +++.+||+++ |+ +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EGQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-CceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999986 489999999999888999999999997 5999999997 5689999999 44 79999
Q ss_pred CCCCccchhccCCcch-h-----------chhhhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCchHHHHH
Q 001048 835 YNPATWMLEVSSNSME-T-----------QLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFK 902 (1174)
Q Consensus 835 ~npad~~l~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 902 (1174)
.|||||++|+++.... . ....++++.|++|+.+++..+.++.........+.....+.|..++|.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999885332 1 123478899999988776654433211111111111123458889999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 001048 903 ACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTV 982 (1174)
Q Consensus 903 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 982 (1174)
.|++|+++.++||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.+ ++.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccch
Confidence 999999999999999999999999999999999999997654444556778899999998888877644 5777889999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 001048 983 LYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQ 1062 (1174)
Q Consensus 983 ~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1174)
|+||+.+++|++++|++|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCccc-ccccCCc-ccHHHHHhhhcCCC
Q 001048 1063 VASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKE-ISAFGKA-KTVSAFLDDYFGFD 1140 (1174)
Q Consensus 1063 ~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 1140 (1174)
+|+.+++++++++++|+||++|.++||+||+|++|+||++|+++|+++|||.+.... +.+.++. +++.++ ++.+|++
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~-L~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAV-LNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHH-HHhcCcC
Confidence 999999999999999999999999999999999999999999999999999775432 2222323 344554 4789997
Q ss_pred cc--chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 001048 1141 HD--FLGVVGIVLIIFPILFASLFAYFIGELN 1170 (1174)
Q Consensus 1141 ~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~ 1170 (1174)
.+ +.|+++++|++|+++|+++++++|++++
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5699999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-86 Score=808.55 Aligned_cols=565 Identities=28% Similarity=0.481 Sum_probs=501.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+..+|+|+|+-++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++...++.++|++|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976532 2367999999987664447889999999999999999
Q ss_pred HHHHHHHHhhccCCCC----CHHHHH-HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 677 EESIVFSAWLRLSTQI----DSKTKA-EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+|+|.|+++++.+... ++.++. +..+.+++.+||++++||++|+...||+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999999999877322 222222 25778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCccc
Q 001048 752 PTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLK 830 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~ 830 (1174)
+|.|||+.++.++++.|+++++. +.|++++.|||+.++++.||++++|.+ |+++|+||.+ ++.+||+++ |+ .
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d----~~~~yFe~~-Gf-~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRD----EVLPYFEDM-GF-K 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHH----HHHHHHHhc-Cc-c
Confidence 99999999999999999999874 899999999999999999999999985 9999999984 689999998 44 6
Q ss_pred CCCCCCCCccchhccCCcchh------------chhhhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCchH
Q 001048 831 IKDNYNPATWMLEVSSNSMET------------QLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGW 898 (1174)
Q Consensus 831 ~~~~~npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1174)
||+..++|||+.++++...+. ....++.+.|.+|+.+++....++.........+.....+.|..|.|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 999999999999999832110 12257999999999988877555433222222333344567889999
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHH
Q 001048 899 EQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTT 978 (1174)
Q Consensus 899 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 978 (1174)
.|++.|++|.+..+.||..+...++++.+++|+++|++|++.+. .+..+.+.|.|++||++++..++++.++ +...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999972 5667789999999999999999887775 44567
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001048 979 ERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLT 1058 (1174)
Q Consensus 979 er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~ 1058 (1174)
.||||+|||...+|++++|.++..++++|+.++.+++|.+|+||++||.+++++||.+++++++...+++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccc----------------
Q 001048 1059 PNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISA---------------- 1122 (1174)
Q Consensus 1059 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~---------------- 1122 (1174)
++...|+.++++.++...+++||+||.++||+||+|++|+||+.|++|++++|||++.+.+|.+
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999998877751
Q ss_pred -----cCCc-ccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001048 1123 -----FGKA-KTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQ 1172 (1174)
Q Consensus 1123 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1172 (1174)
+|+. +.+.+|+..+|+|++.|.|+|+||++||.++|.++..+++.|++..
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1221 4567888888999999999999999999999999999999999853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-72 Score=684.15 Aligned_cols=491 Identities=26% Similarity=0.468 Sum_probs=408.7
Q ss_pred cchhhhcCCCCCccHH-------HHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 4 IKLEKLAGIFPDPDVD-------AYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~v~-------~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
..-++..|..+|+|+. |.+.-.+ ..++|++++||+++++|||++|+||+||++..|||||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 4456777777776664 4443222 2568899999999999999999999999998899999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||.+|++||+|||||||||||||.+|.+|+++||++|+. |||||+||||||+++|++||++++|++|+++|+|+++++
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 9999999999999999999999999999999999999986 999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhcccccccccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAI 229 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1174)
.+||+++|++||++.||+||++++++..+..+... +........+.++..........+........ ..
T Consensus 259 ~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 327 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPADFLLDLLSVDSGTRELE------EAVRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KK 327 (613)
T ss_pred HHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH------hHHHHHHHhhhccccchhhhhHHHHhhhcccc-----cc
Confidence 99999999999999999999999988431100000 00000011111110000000000000000000 00
Q ss_pred ccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhh
Q 001048 230 SFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGF 309 (1174)
Q Consensus 230 ~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 309 (1174)
.......++|.|+..+.+|.+++.+|++.+...|.++.+.+++++|.+||+.+ .+....+++.|++|+.+....+..+
T Consensus 328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~--~~~~~~~~~~g~~~~~~~~~~f~~~ 405 (613)
T KOG0061|consen 328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLG--NDAKGIQNRLGLFFFILSFMTFLSM 405 (613)
T ss_pred cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111678999999999999999999999999999999999999999999864 4444555888999999888877665
Q ss_pred h-hHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHH
Q 001048 310 P-EMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSIS 388 (1174)
Q Consensus 310 ~-~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~ 388 (1174)
. .++.+..++++|.||+..++|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|+++.++..+.+++
T Consensus 406 ~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s 485 (613)
T KOG0061|consen 406 FGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAES 485 (613)
T ss_pred HhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCccccccC---CCc
Q 001048 389 LFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVIS---GNT 465 (1174)
Q Consensus 389 l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~~---~~~ 465 (1174)
++.++++..|+...|..+++++++++++++||+++.+.+|.||+|+.|+|+.+|++++++.|||.+....|... .+.
T Consensus 486 ~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~ 565 (613)
T KOG0061|consen 486 LGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCE 565 (613)
T ss_pred HHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998733333221 256
Q ss_pred cchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001048 466 TAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLK 510 (1174)
Q Consensus 466 ~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~ 510 (1174)
.+|.++++..++.. ..+|.++.++.++...++++++..+++..
T Consensus 566 ~~~~~~l~~~~~~~--~~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 566 STGEDVLKQLGFED--SSFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred ccHHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888999888754 35788999999999999999998877653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=682.30 Aligned_cols=706 Identities=19% Similarity=0.243 Sum_probs=423.5
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHH-------HHhCCcccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYIL-------KILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl-------~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|..+|+..|.-++ +.++.=.. ...++++++.. -...|.+..||+||+.... |||||||||
T Consensus 422 ~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRI 498 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRI 498 (1228)
T ss_pred hHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHH
Confidence 34567888998885455 33332111 11122233333 3456788899999993222 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||+|++||+||+|||||||||+.|+..|+++|++.++ |||+|+ ..||.++++.+|+|++|.+|++|+.|+|+++
T Consensus 499 AIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv--VaHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 499 AIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV--VAHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred HHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE--EeeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999864 666665 3579999999999999999999999999988
Q ss_pred HHHHhhCCCCCCCCCChhHHH--HHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHH-Hhhh--ccccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFL--QEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEEL-ARSF--NKSER 224 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~--~~~~~ 224 (1174)
..-- .-.++.+ ++.....+. + +. +....++.....+.+.......... .... .+.+.
T Consensus 575 i~~~----------G~Y~~lv~~Q~~~~~~~~-~-----~~--~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~ 636 (1228)
T KOG0055|consen 575 IALG----------GIYSSLVRLQELEKAAED-E-----EE--EESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEG 636 (1228)
T ss_pred Hhcc----------chHHHHHHHHhhhhhhhc-c-----cc--ccchhhhhhhccccccccccccCCccccccccccccc
Confidence 7621 0011111 111111000 0 00 0000000000000000000000000 0000 00000
Q ss_pred c--ccccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHH-----------HHHHHHHHHHhhhccccCCcc-hhhH
Q 001048 225 H--KNAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKST-----------QLVIIASVTMTVFLRSELAVD-IIHA 290 (1174)
Q Consensus 225 ~--~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~-----------~~i~~~l~~g~~f~~~~~~~~-~~~~ 290 (1174)
+ ...........++ +|-++..+..+.++.+-.+ .+++++.++...+. .+.+ ....
T Consensus 637 e~~~~~~~~~~~~~s~--------~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~---~~~~~~~~~ 705 (1228)
T KOG0055|consen 637 EDPEEPVSEEDEKVSF--------WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYP---PDDDELKRE 705 (1228)
T ss_pred cccccccccccccccH--------HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC---CChHHHHHH
Confidence 0 0000000112223 3444555555554443222 23334444444332 1222 2233
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH--hhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHH--HHHHhhhhhccCcc
Q 001048 291 NAYLGALFYALVILIVDGFPEMNMTI--SRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLES--FVWTSLTYYIIGFS 366 (1174)
Q Consensus 291 ~~~~g~lf~~~~~~~~~~~~~~~~~~--~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~--~~~~~i~Y~~~gl~ 366 (1174)
...+.++|.++....+..+.....++ ....+..|-|...| +.++.++..|++. .. +.++-.++...
T Consensus 706 ~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F---------~~ll~qd~~wFD~~~ns-g~l~~RLa~Da 775 (1228)
T KOG0055|consen 706 VRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF---------RALLRQEVGWFDDPENS-GALSSRLATDA 775 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHcCCCcccCCCccc-hHHHHHHhcch
Confidence 44577888777666555544444444 44456677776666 7888888888883 34 88888888877
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhC---HHHHH
Q 001048 367 PEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVC---PLTYG 443 (1174)
Q Consensus 367 ~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is---~~~y~ 443 (1174)
+.........+.. +.+.+++++.++.+|+..+|-+.++.+.+.++++....+-. +++.-.+ ...|.
T Consensus 776 ~~vr~~v~~rl~~---------vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~--~~~~~~~~~~~~~~~ 844 (1228)
T KOG0055|consen 776 SNVRAAVGDRLSL---------VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQK--KFLKGFSKDDKKAYE 844 (1228)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHH
Confidence 7766655555444 33444555555566666666555444443333222110000 0111000 11122
Q ss_pred HHHHHHHhcCC---------------CccccccCCCccchhhhhhhcCCccCCcc----------hhHHH----------
Q 001048 444 EIGLTVNEFLA---------------PRWEKVISGNTTAGMQTLESRGLNFDSSF----------YWISI---------- 488 (1174)
Q Consensus 444 ~~~l~~nef~~---------------~~~~~~~~~~~~~g~~~l~~~g~~~~~~~----------~w~~i---------- 488 (1174)
-.+-+.+|-.. ..|++.+..+...+.......|+.++.+. +|.+.
T Consensus 845 ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~ 924 (1228)
T KOG0055|consen 845 EASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTF 924 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCH
Confidence 22222222211 11111111111111111111222221111 11110
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccccC
Q 001048 489 -GALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMIL 567 (1174)
Q Consensus 489 -g~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1174)
-.+-.|..+..............++..++..+..+++.+.++.+..+.+. + .+...
T Consensus 925 ~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--------------~---------~~~~~ 981 (1228)
T KOG0055|consen 925 EDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--------------T---------SGGKL 981 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--------------C---------CCCcc
Confidence 01111222222222333334445666777777888888887654332111 0 00011
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
+.-...++|+||+|.++. .++.+||+|+|++|++|+.+||+|||||||||.+.+|-+.++ |.+|.|.+
T Consensus 982 ~~~~G~I~~~~V~F~YPs----------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~I 1049 (1228)
T KOG0055|consen 982 PNVKGDIEFRNVSFAYPT----------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKI 1049 (1228)
T ss_pred ccceeEEEEeeeEeeCCC----------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEE
Confidence 223457999999998763 245789999999999999999999999999999999987776 67999999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHcCCCCccccccc
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTK-----AEFVNEVLQTIELDGIKDSLVG 719 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~ 719 (1174)
||+++++ ...|+++|.|.|+|.+| +.|++|||.|+. . ..+.++. .+.+++.+ .+|++..||.+|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVG 1121 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccC
Confidence 9998765 34688999999999986 579999999982 1 1233322 22333444 378889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.|. +||||||||++||||+++||+||||||.||+||+++++.|.++|++.. .|+|.|+++|+++ ..+.+|.+.++
T Consensus 1122 erG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 ERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVL 1197 (1228)
T ss_pred cccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEE
Confidence 9886 699999999999999999999999999999999999999999999975 4899999999986 46778888888
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. +|++++.|+.++
T Consensus 1198 ~-~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1198 K-NGKVVEQGTHDE 1210 (1228)
T ss_pred E-CCEEEecccHHH
Confidence 6 599999999854
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=649.31 Aligned_cols=493 Identities=25% Similarity=0.427 Sum_probs=412.8
Q ss_pred chhhhcCCCCCcc-------HHHHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCC-cccCCccccchh
Q 001048 5 KLEKLAGIFPDPD-------VDAYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPM-RRGVSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~~-------v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~-~rGLSGGqKkRv 69 (1174)
+.|+..|.+||++ |.+.+.... ..++++.++++++++.|||.+++||+||++. .|||||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 3466778888864 445443211 1234566789999999999999999999863 789999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+||++|+++|+||||||||||||+.++..+++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+||++++
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999999999999999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhccc-c--ccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKS-E--RHK 226 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~--~~~ 226 (1174)
.+||+++|++||++.||+||++++++..+..+ ..+..+.+++.+.|+++..+....++........ . ...
T Consensus 255 ~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 327 (617)
T TIGR00955 255 VPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDS 327 (617)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccc
Confidence 99999999999999999999999987532211 0011123445555655433332222221111000 0 000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHH
Q 001048 227 NAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIV 306 (1174)
Q Consensus 227 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 306 (1174)
......++..+++.|+..+++|.++..+||+..+.+++++.+++++++|++||+.+ .+..+.+++.|++|+++....+
T Consensus 328 ~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~--~~~~~~~~~~g~lf~~~~~~~f 405 (617)
T TIGR00955 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG--LTQKGVQNINGALFLFLTNMTF 405 (617)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 11122356788999999999999999999999999999999999999999999754 4456778889999999888877
Q ss_pred hhh-hhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHH
Q 001048 307 DGF-PEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLT 385 (1174)
Q Consensus 307 ~~~-~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~ 385 (1174)
.+. ..+..+..+|++++|||..++|++++|++|++++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..++
T Consensus 406 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~ 485 (617)
T TIGR00955 406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV 485 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHH
Confidence 764 5567777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcc-ccccC--
Q 001048 386 SISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-EKVIS-- 462 (1174)
Q Consensus 386 ~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~-~~~~~-- 462 (1174)
+.++++++++++++..+|..+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||.+..+ .|..+
T Consensus 486 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~ 565 (617)
T TIGR00955 486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANT 565 (617)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765 33221
Q ss_pred -C-CccchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001048 463 -G-NTTAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFL 509 (1174)
Q Consensus 463 -~-~~~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~ 509 (1174)
+ |...|..+++.+|+... +.|.++++++++.+++.+++++.+++.
T Consensus 566 ~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 566 TGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 44568999999988653 568999999999999999999887653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-67 Score=643.83 Aligned_cols=488 Identities=21% Similarity=0.334 Sum_probs=390.3
Q ss_pred hhcCCCCCc-------cHHHHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 8 KLAGIFPDP-------DVDAYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 8 ~~~~~~~~~-------~v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+..|.+||+ +|.+.+.... ..++|+.++++++++++||++++||+||+...++|||||||||+||+
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 446766664 4556554322 12334566799999999999999999999888999999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFF 153 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf 153 (1174)
+|+++|+||+|||||||||+.++..+++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999986 58999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhh-hcc-cc------cc
Q 001048 154 EGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARS-FNK-SE------RH 225 (1174)
Q Consensus 154 ~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~-~~------~~ 225 (1174)
+++||+||++.|||||++++.+.....+.....+ .....+.+.+.|++... .....+.... ... .. ..
T Consensus 299 ~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (659)
T PLN03211 299 ESVGFSPSFPMNPADFLLDLANGVCQTDGVSERE---KPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSAST 374 (659)
T ss_pred HHCCCCCCCCCCHHHHHHHHcCccccCCCccccc---cchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccc
Confidence 9999999999999999999987543211000000 11122334455543211 1110110000 000 00 00
Q ss_pred cc-ccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHH
Q 001048 226 KN-AISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVIL 304 (1174)
Q Consensus 226 ~~-~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~ 304 (1174)
+. ......+..++++|+..|++|.++. +|++.+..+|+++.+++|+++|++||+.+ ..+.+++.|++||++++.
T Consensus 375 ~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~ 449 (659)
T PLN03211 375 KEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFW 449 (659)
T ss_pred cccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHH
Confidence 00 0011224568999999999999988 78888888999999999999999999753 346788999999988776
Q ss_pred HH-hhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHH
Q 001048 305 IV-DGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVH 383 (1174)
Q Consensus 305 ~~-~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~ 383 (1174)
.+ ..++.+..+..+|++++|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|++++++..
T Consensus 450 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~ 529 (659)
T PLN03211 450 GVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYV 529 (659)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHH
Confidence 65 45678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcc-----c
Q 001048 384 LTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-----E 458 (1174)
Q Consensus 384 ~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~-----~ 458 (1174)
++++++++++++++++...|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+... .
T Consensus 530 ~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~ 607 (659)
T PLN03211 530 LVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLG 607 (659)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccC
Confidence 9999999999999999999999999999999999999997 79999999999999999999999999976432 3
Q ss_pred cccCCC-ccchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001048 459 KVISGN-TTAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFL 509 (1174)
Q Consensus 459 ~~~~~~-~~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~ 509 (1174)
|..+.+ ...+..++....+. ....|.++++++++.+++++++++.+++.
T Consensus 608 C~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 608 CSLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CCCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322111 11112223222222 23478899999999999999988887654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=610.89 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .+++.+|+|+||+|++||++||+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 488999987542 113579999999999999999999999999999999999887 5699999999987
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+||++|++.+++.+||+||+.+.+.++. ...++.++.++++++.++|.+..|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2245679999999999999999999998776642 3344455678899999999988888765 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++...+|++++|. +|++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999875 6667788888886 599999999
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=602.95 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=179.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC------------
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------------ 639 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~------------ 639 (1174)
..++|+||+|.++. .+++++|+|+||+|+|||.+||+||||||||||+++|.|.+++.
T Consensus 1164 g~I~f~nVsF~Y~~----------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS----------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCC----------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 36999999997642 12357999999999999999999999999999999999987741
Q ss_pred ----------------------------------------eEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 640 ----------------------------------------IIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 640 ----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+.+|+|++||.++.+ ..+|+.++||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 158999999998754 45778899999998876 6899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
+|||.++.. +.+.++ ++++++.. .|++..||.+|+.|. .||||||||++|||||+++|+||||
T Consensus 1313 reNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998731 222222 33333333 356678999998765 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecC---cEE-EEEcCCCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNG---GRI-IYFGPLGQ 813 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~~-v~~G~~~~ 813 (1174)
|||||+||+.+++.|.+.|+++. .+++|+|+++|+++ ..+.+|+++++.++ |++ ++.|+.++
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 99999999999999999999986 35899999999874 56789999999752 785 48999754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=575.79 Aligned_cols=214 Identities=21% Similarity=0.286 Sum_probs=178.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+++|+|+||+|+|||.+||+|+||||||||+++|.|.++ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~-----------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYR-----------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeC-----------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 3699999999763 122479999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ..+|+.+++|||++.+|. .|+||||.++. ..+. +.+.++++..++ ++..|+.+|+.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 456788999999998875 69999997642 1122 234455554444 45678999886
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1372 G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd- 1446 (1622)
T PLN03130 1372 GE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD- 1446 (1622)
T ss_pred CC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE-
Confidence 64 599999999999999999999999999999999999999999999875 4899999999975 456689999987
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++++.|++++.
T Consensus 1447 ~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1447 AGRVVEFDTPENL 1459 (1622)
T ss_pred CCEEEEeCCHHHH
Confidence 5999999998654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=576.65 Aligned_cols=213 Identities=19% Similarity=0.272 Sum_probs=178.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+++|+|+|++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~-----------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYR-----------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEEC-----------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 3699999999762 123579999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.+ ..+|+.++||||++.+|+ .|+||||.++. ..+. +.+.++++..++ ++..|+.+|+.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999998875 69999997531 1222 234455555544 34568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+++++.|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1369 G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~- 1443 (1495)
T PLN03232 1369 GE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS- 1443 (1495)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 64 599999999999999999999999999999999999999999999875 4899999999975 456689999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1444 ~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1444 SGQVLEYDSPQE 1455 (1495)
T ss_pred CCEEEEECCHHH
Confidence 599999999854
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=495.44 Aligned_cols=227 Identities=25% Similarity=0.323 Sum_probs=181.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
-++++|++..+..++... ....+...+++||||++++||++||+|+||||||||.|+|+|+.+ |.+|+|.++|.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~ 355 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDL 355 (539)
T ss_pred eeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCccc
Confidence 366777776554433111 001234679999999999999999999999999999999999988 5689999999772
Q ss_pred --Cc---ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCC
Q 001048 653 --VQ---HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVN 724 (1174)
Q Consensus 653 --~~---~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~ 724 (1174)
.. ...++.+-+|+||+ .+.|.+||+++|......... ....++++++.++++.++|.. ..++. ++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~ 428 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PH 428 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 11 22445677888875 678999999999887654432 235666778999999999984 33443 45
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||++|||||+.+|++|++|||||+||+..+..|.++|+++.++ |.|.|+||||.+ -+...||++.+|. +|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G 506 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DG 506 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999876 999999999875 4556667777775 69
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++|+.||.+
T Consensus 507 ~iVE~G~~~ 515 (539)
T COG1123 507 RIVEEGPTE 515 (539)
T ss_pred eEEEeCCHH
Confidence 999999763
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=546.38 Aligned_cols=213 Identities=21% Similarity=0.234 Sum_probs=178.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++. +..++|+|+||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 36999999997632 22469999999999999999999999999999999999887 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ...|+.+++|||++.+|. .|+||||.... ..++ +.+.++++..++. +..|+.+|+.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 356788999999998876 59999996311 1222 2345556655543 4578899876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1419 G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld- 1493 (1522)
T TIGR00957 1419 GE-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD- 1493 (1522)
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 54 599999999999999999999999999999999999999999999865 4899999999974 466789999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1494 ~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1494 KGEVAEFGAPSN 1505 (1522)
T ss_pred CCEEEEECCHHH
Confidence 599999999865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=541.89 Aligned_cols=213 Identities=21% Similarity=0.270 Sum_probs=178.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~-----------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR-----------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeC-----------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 4699999999763 223469999999999999999999999999999999999987 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+|. .||+|||.... ..+. +.+.++++..++. +..|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 457788999999998865 69999995321 2222 3456666666654 4568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|. +||||||||++|||||+++ |+||+||||||+||+.+.+.|.+.|++.. +++|+|+|+|++ +....+|++++|.
T Consensus 1443 G~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 GS-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred cC-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 64 5999999999999999996 89999999999999999999999999864 479999999987 4567899999997
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1519 -~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1519 -HGAVAEMGSPRE 1530 (1560)
T ss_pred -CCEEEEECCHHH
Confidence 599999999854
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=496.82 Aligned_cols=228 Identities=21% Similarity=0.236 Sum_probs=183.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+...... ..-....+.+|+||||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 48899998865321000 0000012469999999999999999999999999999999999887 5689999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
... .+++.++||+|++ .+++.+||.||+.+....+. .....+..+++.++++.+||. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 431 2346799999986 57889999999988654321 112334456788999999995 4556654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++ .+.+.+|++++|. +
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~ 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-L 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999999875 899999999975 5667789888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 99999998754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=493.30 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=175.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-Cee-
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYP- 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 651 (1174)
++++|+++.+... +.+++.+|+|+||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 7788888754210 0112469999999999999999999999999999999999876 568999996 532
Q ss_pred --CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-----cccccc
Q 001048 652 --KVQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-----IKDSLV 718 (1174)
Q Consensus 652 --~~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 718 (1174)
+.. ...++.++|++|++.+++.+||+||+.+...+. ...+..+++++++++.+++.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 111 112456899999988889999999998764321 123334466888999999975 345544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+++
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999999765 899999999975 5667789888
Q ss_pred EEecCcEEEEEcCCC
Q 001048 798 LMKNGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~ 812 (1174)
++. +|++++.|+++
T Consensus 500 ~l~-~G~i~~~g~~~ 513 (520)
T TIGR03269 500 LMR-DGKIVKIGDPE 513 (520)
T ss_pred EEE-CCEEEEECCHH
Confidence 886 58999998863
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=485.87 Aligned_cols=223 Identities=22% Similarity=0.364 Sum_probs=178.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.
T Consensus 260 l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 667777653210 0134699999999999999999999999999999999998752 25899999998764
Q ss_pred cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 654 QH----TFARISGYCEQND---IHSPNITVEESIVFSAWLRLST--QIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ..++.++|++|++ .+++.+||.||+.++....... ..+..+..++++++++.+++. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 404 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA---- 404 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc----
Confidence 21 1245689999985 4678899999998763211110 012333446688999999996 46676654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|
T Consensus 405 -~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~-~G 481 (506)
T PRK13549 405 -RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMH-EG 481 (506)
T ss_pred -cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999888999999999975 5777889988886 58
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
+++..|+.++.
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=489.92 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=169.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCC--CC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQND--IH 670 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~--~~ 670 (1174)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ .+|+|.++|+++... .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 569999999999999999999999999999999999874 479999999876421 1245689999986 47
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
++.+||+||+.++...+.. .....+.+++++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999987533211 122334456788999999996 4556654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 511 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDCE 511 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999999875 899999999975 5667789988886 58999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=486.17 Aligned_cols=215 Identities=19% Similarity=0.333 Sum_probs=175.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. . ..+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 265 ~l~~~~l~~~-------------~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSR-------------D--RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCcccc-------------C--CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 3778888752 1 248999999999999999999999999999999999876 5689999999876
Q ss_pred Ccc----cccceEEEEccC---CCCCCCCCHHHHHHHHHhhc---cCC--C-CCHHHHHHHHHHHHHHcCCC-Ccccccc
Q 001048 653 VQH----TFARISGYCEQN---DIHSPNITVEESIVFSAWLR---LST--Q-IDSKTKAEFVNEVLQTIELD-GIKDSLV 718 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~---~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~ 718 (1174)
... ..++.++|++|+ ..+++.+||+||+.++...+ ... . ......++.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 431 224568999998 45788899999998753211 000 0 11223345678899999996 6677765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
+ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++
T Consensus 408 ~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 408 T-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999878999999999975 56778898888
Q ss_pred EecCcEEEEEcCC
Q 001048 799 MKNGGRIIYFGPL 811 (1174)
Q Consensus 799 l~~~G~~v~~G~~ 811 (1174)
+. +|++++.++.
T Consensus 482 l~-~G~i~~~~~~ 493 (510)
T PRK09700 482 FC-EGRLTQILTN 493 (510)
T ss_pred EE-CCEEEEEecC
Confidence 86 5899998876
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=482.28 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=170.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~~ 672 (1174)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++... ..++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 37999999999999999999999999999999999877 5689999999876432 1345689999995 4778
Q ss_pred CCCHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 673 NITVEESIVFSAWLRLS---TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+||.||+.+....... ......+..++++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999875321110 0112233456688999999995 56677654 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..|++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 99999999999999999999999878999999999975 5677888888886 589999998765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=425.98 Aligned_cols=229 Identities=26% Similarity=0.373 Sum_probs=188.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
+-++.+|++..++.+..+-... .....++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|++
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~--~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRT--VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCcccccc--chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 4567777776666554332211 2235799999999999999999999999999999999998763 5999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+... ..|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+.+++.+++.++++++||+.. +.-.+ +
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~RY--P 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNRY--P 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--HhhcC--C
Confidence 7532 3567789999997 577999999999998776544 45788899999999999999753 33333 4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++.|||||||++||||++.+|++++||||||+||-..+.+|+++|++|.++ |.+-++++||+. -+...+|++++|. +
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~ 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-D 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-C
Confidence 679999999999999999999999999999999999999999999999764 999999999874 3555677777775 6
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|+||+.|+.+
T Consensus 503 GkiVE~G~~~ 512 (534)
T COG4172 503 GKIVEQGPTE 512 (534)
T ss_pred CEEeeeCCHH
Confidence 9999999964
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=480.90 Aligned_cols=204 Identities=20% Similarity=0.262 Sum_probs=168.1
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCC---CCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQND---IHSPN 673 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~---~~~~~ 673 (1174)
+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.... .++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5999999999999999999999999999999999876 46899999998764321 234689999984 47788
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+|+.||+.................++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431111110111222345678999999996 66677654 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 753 TSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|+++++. +|+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999999999999999888999999999986 6777889988886 599999998764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=478.81 Aligned_cols=206 Identities=22% Similarity=0.348 Sum_probs=171.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~~ 672 (1174)
.+++|+||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 48999999999999999999999999999999999886 5689999999876421 1245689999985 4788
Q ss_pred CCCHHHHHHHHHhhcc-CCC--CCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 673 NITVEESIVFSAWLRL-STQ--IDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+|+.||+.++..... ... ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999987532111 000 11223345678899999994 56677664 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|||||+|||+.++..++++|++++++|.|||++|||++ .+.+.+|+++++. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999975 6778889988886 5899999988654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=475.15 Aligned_cols=206 Identities=20% Similarity=0.348 Sum_probs=170.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~ 671 (1174)
+.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++... ..++.++|++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 4699999999999999999999999999999999998762 2589999999876421 2345689999995 578
Q ss_pred CCCCHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 672 PNITVEESIVFSAWLRLS--TQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
+.+||+||+.++..-... ........++.++++++.+++.+ ..++.++ .|||||||||+|||+|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 899999999876321110 01122334566889999999964 4566654 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-EGKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 99999999999999999999999888999999999985 6777889998886 58999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=395.21 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=188.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|++.++ ++.++|+|||++|++||+++|+||||||||||||||.|+.. +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887653 45789999999999999999999999999999999999887 56999999997653
Q ss_pred c----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...|+.+|+|+|+..+||++||.||+.++...- ...++++.++++.++|+.+||.+.+|..- .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346788999999999999999999999985322 24567888889999999999998888763 479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+.. -..+.+|+++.++ +|++++.|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999865 3455678887776 69999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=503.84 Aligned_cols=212 Identities=19% Similarity=0.286 Sum_probs=178.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+.+|+|+||+|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~-----------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT-----------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeC-----------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 4699999999763 223579999999999999999999999999999999999875 37999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+|+ .||||||.... ..+ ++.+.++++.+++. +..|+.+|+.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 346788999999998876 69999995421 112 23466677776653 4568888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|++++|.
T Consensus 1351 G~-nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~- 1425 (1490)
T TIGR01271 1351 GY-VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE- 1425 (1490)
T ss_pred CC-cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999999864 4799999999874 456799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++.+
T Consensus 1426 ~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1426 GSSVKQYDSIQK 1437 (1490)
T ss_pred CCEEEEeCCHHH
Confidence 599999999854
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=464.78 Aligned_cols=216 Identities=15% Similarity=0.265 Sum_probs=172.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 250 ~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred EEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 3778888762 1359999999999999999999999999999999999887 5689999999876
Q ss_pred Cccc----ccceEEEEccCC---CCCCCCCHHHHHHHHHh--hccCCC-CCHHHHHHHHHHHHHHcCCC-CcccccccCC
Q 001048 653 VQHT----FARISGYCEQND---IHSPNITVEESIVFSAW--LRLSTQ-IDSKTKAEFVNEVLQTIELD-GIKDSLVGLP 721 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 721 (1174)
.... .++.++|++|++ .+++.+|+.+|..+... ...... ......++.++++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 4321 244589999985 36788888877433210 000001 12233345678889999885 4456655
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|+++++.
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~- 465 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMS- 465 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEE-
Confidence 369999999999999999999999999999999999999999999999888999999999975 5777889998886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|+++..++.+
T Consensus 466 ~g~i~~~~~~~ 476 (491)
T PRK10982 466 NGLVAGIVDTK 476 (491)
T ss_pred CCEEEEEEccc
Confidence 58999888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=464.40 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=166.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|++.
T Consensus 260 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSY-------------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEE-------------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 48899998754 234699999999999999999999999999999999997541 1489999999764
Q ss_pred Cc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCC
Q 001048 653 VQ----HTFARISGYCEQNDIHSP--NITVEESIVFSAWL--RLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~----~~~~~~~~~v~Q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++.+++ ..|+++++.++... ....... .+.+++++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 22 123456899999875543 35777766543210 0111111 223456889999999986 6676654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHH-hcceeEEec
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEA-FDDLVLMKN 801 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~-~d~~~~l~~ 801 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ .+.+. +|+++++.
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~- 477 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP- 477 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec-
Confidence 699999999999999999999999999999999999999999999998775 47999999975 45553 56676665
Q ss_pred CcEEEEEcC
Q 001048 802 GGRIIYFGP 810 (1174)
Q Consensus 802 ~G~~v~~G~ 810 (1174)
+|++++.-.
T Consensus 478 ~G~i~~~~~ 486 (490)
T PRK10938 478 DGDIYRYVQ 486 (490)
T ss_pred CCceEEeec
Confidence 689887644
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=459.54 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=175.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
...++|+|++..+. .+-..+|||||++|+|||.+||+|..|||||||+++|-+... +.+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCe
Confidence 45799999998653 234589999999999999999999999999999999998776 56899999999
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccC
Q 001048 651 PKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGL 720 (1174)
Q Consensus 651 ~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 720 (1174)
++.. .+.|++++.+||||.+| ..|||.||.-.. ..++ +.+.+++|..+| ++..|+.+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLF-sGTvR~NLDPf~------e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLF-SGTVRFNLDPFD------EYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCcee-cCccccccCccc------ccCH----HHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9765 46788999999999886 579999985221 1122 234444444433 3446777877
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.|. ++|-||||.+++||||+++.+||+|||+|+++|+++-..|++.|++-- +++|||.+.|+.+ .+ ..+|++++|+
T Consensus 1272 gG~-N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TV-md~DrVlVld 1347 (1381)
T KOG0054|consen 1272 GGE-NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TV-MDSDRVLVLD 1347 (1381)
T ss_pred CCc-cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hh-hhcCeEEEee
Confidence 654 699999999999999999999999999999999999999999999853 4799999999986 44 4579999987
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
.|+++++|+|.+
T Consensus 1348 -~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1348 -AGRVVEFDSPAE 1359 (1381)
T ss_pred -CCeEeecCChHH
Confidence 599999999954
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=391.61 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=189.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||+|++.++.. |++|+|.++|+++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 6778887654321 1123579999999999999999999999999999999999887 67999999998764
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...|+.||+++|++.++...||.||+.|...+. ..++++.++++.++++.+||++.+|... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 245778999999999999999999999988765 3668889999999999999998877753 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|+||++|||||+|||.+.+.|+++|+++.++ |.||+++||+++ -+.+.||++.+|. +|+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999864 3555667777775 69999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|+..+
T Consensus 222 E~G~v~~ 228 (339)
T COG1135 222 EEGTVSE 228 (339)
T ss_pred EeccHHH
Confidence 9999743
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=441.47 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=163.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 58999998854 23469999999999999999999999999999999999876 56899999873
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 729 (1174)
+.+||++|++. +.+.+|++||+.+.. .. . ..+++++++++.+++. +..++.++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 35899999864 456799999986421 11 1 1234577899999984 55566554 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~ 808 (1174)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+.+.+|+++++. +|+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~-~g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEIT-PDGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEcC
Confidence 999999999999999999999999999999999999999886 359999999975 5666788888886 58887 77
Q ss_pred cCC
Q 001048 809 GPL 811 (1174)
Q Consensus 809 G~~ 811 (1174)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 775
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=374.14 Aligned_cols=230 Identities=25% Similarity=0.349 Sum_probs=199.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++++|++. .+++.|++|||++|++||+++||||||||||||||+|.|+.+ |.+|+|.++|++
T Consensus 7 ~~I~vr~v~~~-------------fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKS-------------FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeee-------------cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 35899999874 356799999999999999999999999999999999999988 569999999998
Q ss_pred CCcc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCC
Q 001048 652 KVQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 724 (1174)
+... ..++++|+++|+..+|..+||+||+.|..+ .....+++..++.+..-++.+||... +|.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 6431 356779999999999999999999999653 33456777788888888999999876 5544 45
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||+++|||++.||++|++|||||||||.++..+-++++++.++ |.|++++|||.+ ++...+|+++++.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 999999999987 78899999999985 8
Q ss_pred EEEEEcCCCccc----hhhhhhhhhC
Q 001048 804 RIIYFGPLGQHS----CKVIEYFECI 825 (1174)
Q Consensus 804 ~~v~~G~~~~~~----~~~~~~f~~~ 825 (1174)
+++..|++++.. .-+.+||...
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 999999987642 2356677755
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=376.46 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=192.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++|+||+..+ .++.+++|+|++|++||+++++|||||||||+||+|.++.+ |++|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5788888643 35789999999999999999999999999999999999888 67999999999876
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--IKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 728 (1174)
. ...|+.+|||-|+-.+||++||.||+.+-..+. ..++++.+++++++++.+||+. ..++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999999876654 4577888899999999999974 45554 468999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|+|++|||.+ +.+.++|++.++. +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999876 999999999987 7889999999997 699999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.++|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=433.74 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=163.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 48899998754 23579999999999999999999999999999999999877 56899998542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
..+||++|++ .+++.+||+||+.++..... .... ...++++++.+++.+ ..++.++ +|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 67788999999988643211 1111 123456899999864 4566553 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|+++++.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5667789988887667776 344
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=379.36 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=179.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++++++.+ +...+|+|+|++|++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f-------------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSF-------------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEe-------------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 36777777643 23689999999999999999999999999999999999988 5699999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. .....++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 334568999999999999999999999977652 45566777899999999999998886 3579999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+|||||+.+|+||+||||+++||+.|+..+.+.|.++.+ .++||+++|||.+ |...+.|++++|.+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 99999999999999999999999999999999999999875 4899999999986 67788899999975
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=434.67 Aligned_cols=211 Identities=22% Similarity=0.263 Sum_probs=171.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. + ..|+++||++++||+++|+||||||||||+++|+|..+ |.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478888887431 2 24899999999999999999999999999999999887 568999885
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
..++|++|+..+.+.+||+||+.+.... .. ....++++++.+++.+..|+.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1479999998888899999999875321 11 12346789999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||+. .+...+|+++++. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999864 899999999975 4666788888773 588887775
Q ss_pred Ccc---chhhhhhhhhC
Q 001048 812 GQH---SCKVIEYFECI 825 (1174)
Q Consensus 812 ~~~---~~~~~~~f~~~ 825 (1174)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 12344566665
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=418.92 Aligned_cols=249 Identities=27% Similarity=0.408 Sum_probs=202.4
Q ss_pred CCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccccCC-CCccEEEEeceEEEEeeCCccccc
Q 001048 514 KSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMILP-FEPLTVTFEDLRYYVDIPSAMRKN 592 (1174)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1174)
..+++-+.+|+++..+++|.....- . ..| .-...|+|+||+|.++.+
T Consensus 431 lmkgvGAs~rvFel~dr~P~i~~~G------------------~--------~~p~~~~G~IeF~~VsFaYP~R------ 478 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPRIPLTG------------------T--------LAPDHLQGVIEFEDVSFAYPTR------ 478 (716)
T ss_pred HHHhcchHHHHHHHhccCCCCCCCC------------------c--------cccccccceEEEEEeeeecCCC------
Confidence 3556667788999888765442210 0 011 123469999999987643
Q ss_pred ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 001048 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 669 (1174)
Q Consensus 593 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~ 669 (1174)
++.++|||+||+|+|||++||+||||+||||+.++|...++ |.+|+|.+||+|+.+ ..+++.+|+|.|||.
T Consensus 479 ----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 479 ----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred ----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 35689999999999999999999999999999999998877 679999999999765 346789999999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHH-----HHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKT-----KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
+| .-||+|||.|+.. ..+.++ +.+.+++.+. ++++..||.+|+.|. +||||||||++|||||++||
T Consensus 553 LF-s~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 553 LF-SGSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred ee-cccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCC
Confidence 86 5699999999854 222222 2233444554 567889999999876 59999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 745 SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+||||||.||+||++++..|.+.|.++.+ ++|||+|.|+++ ..+.+|+++++. +|++++.|+.++
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~G~V~E~G~h~e 688 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-KGRVVEMGTHDE 688 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-CCeEEecccHHH
Confidence 99999999999999999999999999876 699999999875 578889888886 599999998755
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=429.02 Aligned_cols=201 Identities=23% Similarity=0.337 Sum_probs=162.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 48899998754 23579999999999999999999999999999999999876 56899998542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
..+||++|++ .+++.+||.||+.++..... .... ...++++++.+++.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1589999986 47788999999988643211 1111 223557899999864 4566543 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||+++ .+...+|+++++.++|+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 3 8999999975 5667789988887556776 334
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=379.57 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=187.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +.++|+||||++++||+++|+||||||||||+|+|.|..+ |.+|+|.++|++.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 589999998652 2269999999999999999999999999999999999887 5799999999987
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDI--HSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.....+..+|||||... .-+..||+|.+..+...+..- ....++.++.++++|+.+|+.+.+|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 65444578999999642 224589999999874332210 11123346789999999999999999987 59999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.+|++++|. +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 6889999999995 6899999
Q ss_pred CCCcc
Q 001048 810 PLGQH 814 (1174)
Q Consensus 810 ~~~~~ 814 (1174)
++++.
T Consensus 221 ~~~~~ 225 (254)
T COG1121 221 PPEEV 225 (254)
T ss_pred Chhhc
Confidence 99764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=372.99 Aligned_cols=193 Identities=27% Similarity=0.452 Sum_probs=168.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~Q~~~~~ 671 (1174)
..+|+++|++|++||+++|+|||||||||||++|.|... |++|.|.++|.++... . +++.+|||+|+..++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 579999999999999999999999999999999999887 5799999999876531 1 345699999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-ccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
|++||+||+.+...+.. .....+.++++++++.+||.+..+ +.. .+|||||||||+|||||+.+|++++.|
T Consensus 96 ~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 99999999998765542 222256677889999999986655 443 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||.+||+.+++.|+++++++.++ |+|+|++|||+ ++...+|+++.+.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999865 99999999986 67899999999975 76
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=382.58 Aligned_cols=220 Identities=27% Similarity=0.411 Sum_probs=189.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 37788998854 35789999999999999999999999999999999999887 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. +.+.+.++||||.....+.+||+|-+.++..-+... ....++.++.++++++.+++.+.+++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 456788999999988888999999999885322111 11233445578999999999999999875 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||.|||||+++|++|+||||||.||...+.+++++++++++ +|+|+|+++||++ .....+|++++|. +|+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999985 5999999999987 4667788888886 699999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|++++.
T Consensus 220 ~G~p~ev 226 (258)
T COG1120 220 QGTPEEV 226 (258)
T ss_pred ecCcchh
Confidence 9998753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=434.64 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=161.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 58899998754 23579999999999999999999999999999999999887 56899999641
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 729 (1174)
..+||++|+. .+.+..|+.+++.- .. .....+.+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2579999974 34456788777531 11 1122456788999999963 5566654 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~ 808 (1174)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+...+|+++++. +|+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEcC
Confidence 999999999999999999999999999999999999999987 34 9999999975 5667788888886 58987 78
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+.+
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=347.98 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=185.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++|+||+..+ ..+ +++|+||||+|++||++-|+||||||||||||+|.+... |++|+|.++|+++.
T Consensus 2 I~f~~V~k~Y-----------~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAY-----------PGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhc-----------CCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 5788887643 233 679999999999999999999999999999999999877 67999999999875
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. -.||.||+|+||..++++.||+||+.|+.... +.+..+.++++.++|+.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 32 25788999999999999999999999987665 445677888999999999999877765 34799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||+++||+. ++.+...+.++..++|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999998999999999974 67777766666666799987
Q ss_pred EcC
Q 001048 808 FGP 810 (1174)
Q Consensus 808 ~G~ 810 (1174)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=364.31 Aligned_cols=222 Identities=27% Similarity=0.367 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+..++ +++++|+|||++|++||+++|+||||||||||||+|+|+.+ +++|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 578899887542 35789999999999999999999999999999999999876 6799999999775
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-----CCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 653 VQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-----TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 653 ~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
.. +.+++.+||++|++.+.+.+||.+|+..+..-+.+ -....++.++.+-+.|+.+|+.+.+-.+.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 43 24567899999999999999999999987532211 112223445667788999999988777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.|||||+|||+|||||+++|++++.|||+++|||.+++.|++.|+++.+ +|.|||++.|+.+ -..++|||++-+.
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999986 4999999999986 4667889999887
Q ss_pred cCcEEEEEcCCCccc
Q 001048 801 NGGRIIYFGPLGQHS 815 (1174)
Q Consensus 801 ~~G~~v~~G~~~~~~ 815 (1174)
+|+++|.||+++..
T Consensus 223 -~G~ivfDg~~~el~ 236 (258)
T COG3638 223 -AGRIVFDGPASELT 236 (258)
T ss_pred -CCcEEEeCChhhhh
Confidence 59999999997643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=429.91 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=161.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 48899998754 23579999999999999999999999999999999999876 56899998 4321
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 730 (1174)
.+||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999975 5788999999998753211 011 1134567888888885 34566654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE-Ec
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY-FG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~-~G 809 (1174)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+.+ .+...+|+++++.++|++.. .|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999964 56677888888863577765 44
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=354.06 Aligned_cols=219 Identities=27% Similarity=0.391 Sum_probs=185.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC---CCCeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~ 648 (1174)
..++.+|+++++ +++.+|+|||+.|++++++|++|||||||||||+++.... ++...+|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 357888998765 3578999999999999999999999999999999999843 334678999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
|+++.. ...|+.+|+|+|.|.-|| +|++||+.|+.++.... .++.++.|+..|+...|. +..|++-.++
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa- 147 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSA- 147 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCc-
Confidence 998744 246888999999999988 99999999998776332 266778899999888875 4455554432
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+.+|+|||||||||+|||.+..+|.+++.+|++ .-|||++||.+. ...+..|....+. .
T Consensus 148 -~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~-~ 223 (253)
T COG1117 148 -LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFY-L 223 (253)
T ss_pred -cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhc-c
Confidence 46999999999999999999999999999999999999999999999984 799999999864 5566778888887 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++|++|+++
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 8999999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=421.96 Aligned_cols=461 Identities=17% Similarity=0.183 Sum_probs=280.4
Q ss_pred HHHHhhhhHHhhhhcCCC-CChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 001048 313 NMTISRLAVFYKHRDLCF-YPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFR 391 (1174)
Q Consensus 313 ~~~~~~~~v~~rer~~~~-y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~ 391 (1174)
.....|+..-+||...-+ -+.+.|+++..+..+.+.++..++..++.. .+-.-....++..++.+++...+.+.+..
T Consensus 672 ~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~f 749 (2272)
T TIGR01257 672 KSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCF 749 (2272)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHH
Confidence 344455555566643322 357888888888776555554443333221 12112223445556666777788888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhhc-ccccCCCCCcceehhh-hhCHHHHHHHHHHHH--hcC--CCccccccCCCc
Q 001048 392 AIASIFRTVAVSFAIGTMAILMLLLFGG-FIIPKKSMPSWLEWGF-WVCPLTYGEIGLTVN--EFL--APRWEKVISGNT 465 (1174)
Q Consensus 392 ~i~a~~~~~~~A~~~~~~~~~~~~l~~G-f~i~~~~ip~~~~w~~-~is~~~y~~~~l~~n--ef~--~~~~~~~~~~~~ 465 (1174)
++++++....+|..+++++.....+-.. ++...+.++....|.. -++|..+++...... |-. +..|...... .
T Consensus 750 liS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~-~ 828 (2272)
T TIGR01257 750 LLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNS-P 828 (2272)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccccccccc-c
Confidence 9999999999988888776544332211 1223345555555543 456766665433322 221 1122211000 0
Q ss_pred cchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcccc-chhhhhhhhccccCCCCCC-CCCC
Q 001048 466 TAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPP-GKSRTLI-SYEKYLELQDQKDCVGSDR-DRSP 542 (1174)
Q Consensus 466 ~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 542 (1174)
.. .+...+...+++++.-.+++.++..+.-...... +..+.-- ...+..+............ ....
T Consensus 829 ----------~~-~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~~~~~~ 897 (2272)
T TIGR01257 829 ----------LE-GDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKT 897 (2272)
T ss_pred ----------cC-CCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCcccccccccccccc
Confidence 00 0000111222233332333333333322221110 1011000 0000000000000000000 0000
Q ss_pred CCCCCc-cCCCCCCCC-CccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecC
Q 001048 543 TDAPLK-AATGPKRGE-RPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGV 620 (1174)
Q Consensus 543 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~ 620 (1174)
...... ......++. ....+. ..+.....++++|+++.+. .+++.+|+|+|+++++||+++|+||
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~ 964 (2272)
T TIGR01257 898 EPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGH 964 (2272)
T ss_pred ccccccccccccccccccccccc--ccCCCCceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECC
Confidence 000000 000000000 000000 0111234689999988542 1235799999999999999999999
Q ss_pred CCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH
Q 001048 621 SGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA 698 (1174)
Q Consensus 621 sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 698 (1174)
||||||||+|+|+|..+ |.+|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.++++. ...++.+
T Consensus 965 NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~ 1039 (2272)
T TIGR01257 965 NGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQ 1039 (2272)
T ss_pred CCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHH
Confidence 99999999999999987 569999999998743 2345679999999999999999999999876542 2334455
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 001048 699 EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778 (1174)
Q Consensus 699 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 778 (1174)
++++++++.+||.+..|+.++ +|||||||||+||+||+.+|+||+|||||+|||+.+++.++++|++++ +|+||
T Consensus 1040 ~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TI 1113 (2272)
T TIGR01257 1040 LEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTI 1113 (2272)
T ss_pred HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEE
Confidence 678999999999988887764 699999999999999999999999999999999999999999999995 59999
Q ss_pred EEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 779 i~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|++||+++ ++...+|+++++. +|+++..|++..
T Consensus 1114 IltTHdmd-ea~~laDrI~iL~-~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1114 IMSTHHMD-EADLLGDRIAIIS-QGRLYCSGTPLF 1146 (2272)
T ss_pred EEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999975 5666788888887 599999998743
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=391.79 Aligned_cols=217 Identities=28% Similarity=0.400 Sum_probs=194.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ ++..+|+|+|++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++
T Consensus 3 ~i~l~~v~K~y-------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF-------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 47888887643 22229999999999999999999999999999999999988 6799999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
+. ...+|.+++|+|+..++|++||+||+.|+.+.+ ..++++.+++++++.+.++|++..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 345678999999999999999999999998775 4467788899999999999999999874 47999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++|+++++. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999875 899999999974 7888899999997 699999999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+.+.
T Consensus 218 p~el 221 (338)
T COG3839 218 PLEL 221 (338)
T ss_pred hHHH
Confidence 8654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=394.42 Aligned_cols=215 Identities=28% Similarity=0.456 Sum_probs=189.0
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++|++..+ + ++.+|+||||++++||++||+||||||||||+|+|+|... |++|+|.++|.+
T Consensus 4 ~i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEe
Confidence 36677777643 3 4689999999999999999999999999999999999987 579999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ...++.+||++|++.+++.+||+|||.|.+.++.... ....++++++++.++|.+..++++ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 754 3567789999999999999999999999998875432 445678999999999998555555 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++||+||+++|++|||||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+++++. +|++++.
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~ 218 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAE 218 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999886 89999999986 7777788888886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+++
T Consensus 219 g~~~ 222 (293)
T COG1131 219 GTPE 222 (293)
T ss_pred CCHH
Confidence 9764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=374.04 Aligned_cols=208 Identities=30% Similarity=0.479 Sum_probs=186.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ-HTFARISGYCEQNDIHSP 672 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~Q~~~~~~ 672 (1174)
+...+++|||++|+.||++||+|||||||||||++|+|+.. |..|.|.+||+ +... ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 35679999999999999999999999999999999999988 56999999999 5443 334578999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
++||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..+.. +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 23345667788999999999999998876 358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+++||..-+.++.+.|+++.++ |.|++++|||+. +..+.+|++++|. +|+|...||+++.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~ev 225 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPDEV 225 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHHHH
Confidence 9999999999999999999876 999999999986 8899999999997 5999999998653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=424.24 Aligned_cols=200 Identities=18% Similarity=0.293 Sum_probs=157.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 588999988542 12469999999999999999999999999999999999877 56899998652
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 731 (1174)
..+||++|+. .+.+++.+|.........+ ... .+.++++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 3589999975 3456676664432111111 111 345778999999973 445544 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~ 810 (1174)
|||+|||+|+.+|++|||||||+|||+.+...+.+.|++. +| |||++||++. .+...+|+++++. +|+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999975 5666788888886 58988 6776
Q ss_pred C
Q 001048 811 L 811 (1174)
Q Consensus 811 ~ 811 (1174)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=392.27 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=194.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ ++..+|+|+|++|++||+++|+|||||||||||++|+|... |++|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 58888888643 35789999999999999999999999999999999999988 6799999999998
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..+|.+|+|+|+-.+||++||+||+.|+.+++ ....+++.+++++++++.++|++.+++.. .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 763 45678999999999999999999999998743 23345667889999999999999888875 47999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...+.|++++|. +|++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCC
Confidence 9999999999999999999999999999999999999999765 999999999975 7788889998886 599999999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+++.
T Consensus 221 P~ei 224 (352)
T COG3842 221 PEEI 224 (352)
T ss_pred HHHH
Confidence 8653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=350.53 Aligned_cols=203 Identities=27% Similarity=0.403 Sum_probs=185.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.++++||||+++.||+++|+|||||||||+|++|+++.. |++|.|++||.+... ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 459999999999999999999999999999999999988 569999999988643 3467889999988889999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+|||.|.+++. +....+.+++.+++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999876 45667778899999999999999999987 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|..+.+.+.+.+++++++|++||++||... ++...||+++++. .|++|+.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHHH
Confidence 999999999999999988999999999875 7777899999987 599999999854
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=426.69 Aligned_cols=220 Identities=27% Similarity=0.392 Sum_probs=183.3
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
....++|+||+|+++.+ ++.++|+|+||+|++||.+||+|||||||||++++|.+.++ |.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 34679999999977532 35689999999999999999999999999999999999887 6799999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCcccccccCC
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
.++.. +..|..+|.|.|+|.+ +..||+|||.|+.. +.+.++.. ..+.+.+ ..|.+..||.+|+.
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKP-----DATREEIEEAAKAANAHDFI--LKLPDGYDTLVGER 486 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHH--HhhHHhhcccccCC
Confidence 98754 3467789999999966 56899999998732 22222221 1122333 35677889999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|+ +||||||||++|||||++||+|||||||||+||+.+++.|+++|+++. +|+|.|+++|+++ ++ +.+|+++++.
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~- 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVME- 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEE-
Confidence 87 499999999999999999999999999999999999999999999876 4999999999986 45 5588888886
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++|+.|++++.
T Consensus 562 ~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 562 EGKIVEQGTHDEL 574 (1228)
T ss_pred CCEEEEecCHHHH
Confidence 5999999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=414.35 Aligned_cols=277 Identities=25% Similarity=0.378 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccc
Q 001048 487 SIGALIGFTMLFNAVFTLALTFLKPP-GKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKM 565 (1174)
Q Consensus 487 ~ig~Li~f~~l~~~i~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1174)
.+|.+++|..+...+..++..+.... +.++...+.+|+.++.+.+++...+. . ..
T Consensus 408 TlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-----------------~-------~~ 463 (709)
T COG2274 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-----------------T-------LI 463 (709)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-----------------c-------cc
Confidence 35777777777777766665544332 22344456667776665432111000 0 01
Q ss_pred cCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE
Q 001048 566 ILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645 (1174)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i 645 (1174)
..+.....++++|++|.+. ..+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++ |.+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~-----------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeC-----------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceE
Confidence 1233456799999999764 233479999999999999999999999999999999999988 679999
Q ss_pred EECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCccccc
Q 001048 646 RIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 646 ~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~ 717 (1174)
++||.++.. ...|+.+|||+||+.+ ++.|++||+.++.. ..+.++.. ..+++.++ .++...||.
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~ 602 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDTP 602 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccccccc
Confidence 999998754 4678999999998876 56799999998642 22222211 12233333 456778999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|+.|. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++ ..+.+|+++
T Consensus 603 v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEE
Confidence 998775 6999999999999999999999999999999999999999999999864 799999999974 578899999
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
++. +|+++++|+.++
T Consensus 679 Vl~-~Gkiv~~gs~~e 693 (709)
T COG2274 679 VLD-QGKIVEQGSHEE 693 (709)
T ss_pred Ecc-CCceeccCCHHH
Confidence 886 599999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=332.87 Aligned_cols=197 Identities=28% Similarity=0.374 Sum_probs=173.8
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
..+++|++||++||+||||||||||||+|+|... |.+|+|.+||++.... ...|-++.++|+.++|.++||++|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678999999999999999999999999999987 5699999999987643 456678999999999999999999998
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
+..-. -.-.++.+++++.++..+||.++.+++-+ +|||||||||++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 75321 11234566788999999999999888754 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 763 TVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 763 ~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
++..++.++++ ++.|++++||+|+ +.....|+++++. +|||.+.|+.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccHH
Confidence 99999999986 4899999999997 7888899999997 59999999964
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=380.18 Aligned_cols=217 Identities=26% Similarity=0.384 Sum_probs=188.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 358899998754 23579999999999999999999999999999999999887 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ...++.+||++|++.+++.+||+||+.+.+.++ ..+..+..++++++++.+++.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHH
Confidence 643 234577999999999999999999999876543 22334455678899999999988888764 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 6777889988887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 221 ~~~~ 224 (306)
T PRK13537 221 APHA 224 (306)
T ss_pred CHHH
Confidence 9743
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=347.73 Aligned_cols=218 Identities=24% Similarity=0.354 Sum_probs=180.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|++..+.... ...++|+||||+|.+||+++|+|+||||||||.++|+|..+ +.+|+|.++|++.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 478888887654221 11269999999999999999999999999999999999988 5699999999876
Q ss_pred Ccc----cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCC
Q 001048 653 VQH----TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 725 (1174)
... .+.+.+.+|+||+ .+.|..||++.|.-+... ...++ .++++.++++.+||.+. .++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 3567899999997 567999999999876543 22333 33448899999999753 3333 357
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|+||||||+||...+.+|+++|.+++++ |.|.|++|||.+ -+...||++++|. +|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NGQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CCe
Confidence 9999999999999999999999999999999999999999999999875 889999999975 4666778877776 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.++.++
T Consensus 220 ivE~~~~~~ 228 (252)
T COG1124 220 IVEIGPTEE 228 (252)
T ss_pred EEEeechhh
Confidence 999999754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=381.55 Aligned_cols=219 Identities=22% Similarity=0.312 Sum_probs=186.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788998765211 112479999999999999999999999999999999999987 56999999999875
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.+||++|+..+++..||+||+.++.... ..++++..+++.++++.+||.+..|... .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 32 13567999999999999999999999876532 2345556678899999999998877764 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+++|++|+||||||+||+.++..++++|++++++ |.|||++||+++ .+.+.+|++++|. +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 999999999975 5667789888886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T TIGR02314 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9999743
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=383.71 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=188.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887541 23579999999999999999999999999999999999887 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|++.++|++||+||+.|+.+.+ ..++.+..++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 532 23467999999999999999999999986543 2345556678899999999998888765 36999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|. +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999875 999999999975 6788899998886 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 854
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=381.50 Aligned_cols=216 Identities=27% Similarity=0.419 Sum_probs=189.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF-------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe-------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 47889998754 23569999999999999999999999999999999999987 5699999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..++.+..++++++++.++|.+..|+.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 53 224567999999999999999999999986543 2345566778999999999998888765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999985 6788899998887 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 219 ~~~ 221 (353)
T TIGR03265 219 PQE 221 (353)
T ss_pred HHH
Confidence 854
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=380.05 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=189.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 58889998754 23569999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|+..++|++||+||+.|+.+.+ ..++.+..++++++++.++|.+..|+.. +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 543 23467999999999999999999999987543 2345566778999999999998877764 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++.+.+|++++|. +|+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999985 6778899999997 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 221 ~~~ 223 (351)
T PRK11432 221 PQE 223 (351)
T ss_pred HHH
Confidence 854
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=362.72 Aligned_cols=214 Identities=25% Similarity=0.365 Sum_probs=180.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSF-------------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 567777654 23479999999999999999999999999999999999887 568999999987643
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 655 H------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 655 ~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ..++.++|++|++.+++.+||+||+.++..... ....++..++++++++.+++.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 1 245679999999989899999999998753221 12344445678889999999877776653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999975 5667789998886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 218 ~g~~~ 222 (235)
T cd03261 218 EGTPE 222 (235)
T ss_pred ecCHH
Confidence 99864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=379.50 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=188.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE--EEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 650 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|+
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478889987542 3469999999999999999999999999999999999887 457 99999999
Q ss_pred eCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 651 PKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 651 ~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
++... ..++.+|||+|+..++|++||+||+.|+...+ ..++.+..++++++++.++|.+..|+.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 87432 23567999999999999999999999986543 2345556678999999999998888775 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 6778899999987 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 220 ~g~~~~ 225 (362)
T TIGR03258 220 HGEPQA 225 (362)
T ss_pred EcCHHH
Confidence 999754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=355.60 Aligned_cols=216 Identities=26% Similarity=0.386 Sum_probs=188.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++|+++ .. ..+|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~-----------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYP-----------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcC-----------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 367889988652 22 589999999999999999999999999999999999988 5689999999986
Q ss_pred C----cccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 V----QHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~----~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ....++.+|||+|++ ..+..-||.|.+.|+..-. ..+.++.+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 5 345678899999996 4466789999999986432 4566678899999999999999877764 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.+ .+.+.+|+++++. +|+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEEe
Confidence 99999999999999999999999999999999999999999999877 799999999975 6777789998887 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
++|++.
T Consensus 219 ~~g~p~ 224 (235)
T COG1122 219 ADGDPA 224 (235)
T ss_pred ecCCHH
Confidence 999863
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=374.50 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=187.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++..+ +++.+|+|+||+|++||++||+||||||||||+++|+|..+ |.+|+|.++|++
T Consensus 40 ~~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 458999998854 23579999999999999999999999999999999999887 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ...++.+||++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++.++ +||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 234567999999999999999999999765543 12333445667889999999988888765 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999985 6778899999887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 255 ~~~~ 258 (340)
T PRK13536 255 RPHA 258 (340)
T ss_pred CHHH
Confidence 9753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=376.98 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=188.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 14 ~L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 48899998754 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|++.++|++||+||+.|+...+ ..+..+..++++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 532 23567999999999999999999999986533 2344555677899999999998888765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999875 999999999975 6788899999997 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 229 ~~~ 231 (375)
T PRK09452 229 PRE 231 (375)
T ss_pred HHH
Confidence 754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=333.50 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=183.9
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCC
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHS 671 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~ 671 (1174)
++++++++|||+++++||+++|+|||||||||.+.++.|+.+ +.+|+|.+||.+++... -+.-+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 346789999999999999999999999999999999999987 56999999999986532 233589999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
-.+||+|||......+.. +....+++++++++++.+++.|+++.+.. .||||||+|+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999987766532 22234556678899999999999988743 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|++|+||.+..+|.++++.|++.|..|++|-|... +....+|+..++.+ |++..+|++++
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 99999999999999999999999999999999987 78899999999975 99999999865
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=375.58 Aligned_cols=219 Identities=27% Similarity=0.396 Sum_probs=187.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSF-------------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEe-------------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 36788888754 23579999999999999999999999999999999999887 5689999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
... ..++.++||+|++.+++++||+||+.|+...... ...+.++..++++++++.++|.+..|+.. ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 532 2346799999999999999999999998653211 12344555678899999999988877765 4699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999876 899999999985 6778899999887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 220 ~~~~ 223 (353)
T PRK10851 220 TPDQ 223 (353)
T ss_pred CHHH
Confidence 9754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=351.57 Aligned_cols=199 Identities=31% Similarity=0.469 Sum_probs=170.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 579999999999999999999999999999999999877 5689999999886432 2345789999998888899999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||+.++.... ........++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998875432 12333445668889999999877776653 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 758 ARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999764 899999999975 5667889988887 58988765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.70 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 58899998754 23469999999999999999999999999999999999987 5699999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ...++.+|||+|++.++|++||.||+.|+.+.+ ..+..+..++++++++.++|.+..++.. .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234567999999999999999999999986543 2345556678899999999998877765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999975 6788899999987 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 234 ~~~ 236 (377)
T PRK11607 234 PEE 236 (377)
T ss_pred HHH
Confidence 754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=353.21 Aligned_cols=209 Identities=24% Similarity=0.364 Sum_probs=174.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-----------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYP-----------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEec-----------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 56788887542 112469999999999999999999999999999999999877 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+||+||+.++...+ .....+..++++++++.+++.+..++..+ +||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 13567899999998889999999999875432 12333445678899999999877776653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS-RGRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 99999999999999999999999999999999999999999999877999999999975 5666789888886 4663
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=351.37 Aligned_cols=201 Identities=27% Similarity=0.431 Sum_probs=173.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999876 568999999988642 3567899999998888899999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.++...+ ........+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 999875433 1233344567889999999987766665 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~ 812 (1174)
.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|+++++.+ +|++++.++.+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999865 4899999999975 56778899998874 59999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=373.45 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=179.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---c----cceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---F----ARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~----~~~~~~v~Q~~~~ 670 (1174)
++.+|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.++|+++.... . ++.++||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4579999999999999999999999999999999999987 57999999999875422 2 5679999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
++++||+||+.++.... ..+.++..+++.++++.++|++..++..+ .|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 23455667788999999999887777653 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 999999999999999999999764 899999999975 5678889998886 599999999754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=370.72 Aligned_cols=203 Identities=28% Similarity=0.432 Sum_probs=177.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3579999999999999999999999999999999999887 568999999988643 234567999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
|+||+.+.+.++ .....+..++++++++.++|.+..++.++ .|||||||||+||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 22334455678899999999887787764 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999877999999999975 6777889988886 59999999874
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=367.39 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=183.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY-------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe-------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 57889998754 23579999999999999999999999999999999999877 5689999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.+++.+..++.++ +|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 42 224567999999998889999999998755432 12333445567889999999887777764 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999975 6667889988886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 74
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=351.24 Aligned_cols=213 Identities=28% Similarity=0.372 Sum_probs=179.8
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKY-------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEE-------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 567777643 23579999999999999999999999999999999999876 568999999987642
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 --HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 --~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 223457899999998889999999999875433 12333445678899999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999975 5667788888886 5999998876
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 217 ~ 217 (220)
T cd03265 217 E 217 (220)
T ss_pred H
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=375.14 Aligned_cols=216 Identities=27% Similarity=0.401 Sum_probs=186.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAY-------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEe-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 37888888754 23579999999999999999999999999999999999887 5689999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.++||+|++.+++.+||+||+.|+...+ ..+..+..++++++++.++|.+..++.++ +||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 432 23467999999999999999999999986533 22344556778999999999887777653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 6777889998887 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 218 ~~~ 220 (369)
T PRK11000 218 PLE 220 (369)
T ss_pred HHH
Confidence 754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=339.19 Aligned_cols=209 Identities=25% Similarity=0.379 Sum_probs=183.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSP 672 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~ 672 (1174)
+...+++||||++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.... .+.-++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 46789999999999999999999999999999999999998 66999999999876532 2345788999999999
Q ss_pred CCCHHHHHHHHHhhcc--------CCC-CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 NITVEESIVFSAWLRL--------STQ-IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
++||.||+..++..+. +.. ...++..+++.++++.+||.+.+|++.| +||+|||||+.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998855321 111 1345566788999999999999999986 5999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 744 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|++|+||||.+||.+....++.+.|++++++ |.||++|.|+.+ -++..+|++++|. .|+++..|+|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~-~G~~IAeG~P~eV 237 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLN-YGEVIAEGTPEEV 237 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEecc-CCcCcccCCHHHH
Confidence 9999999999999999999999999999874 799999999987 5888899999987 5999999999653
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=371.78 Aligned_cols=219 Identities=21% Similarity=0.317 Sum_probs=184.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788888765210 113579999999999999999999999999999999999987 56899999999865
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.+||++|++.+++.+||+||+.++.... ..+..+..++++++++.+||.+..++.+ ++||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876443 2234445567889999999988777664 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667789988886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T PRK11153 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998643
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=317.54 Aligned_cols=201 Identities=27% Similarity=0.420 Sum_probs=178.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||+++....- ..|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 569999999999999999999999999999999999988 569999999998864322 3489999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.|+.+++ .+++.++.+++.+.+..+||.+..++.+ .+|||||||||.|||||..+|++|+||||+++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 5778899999999999999999887765 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~ 812 (1174)
-+++++.++|-++.+ .|+.++++||+.+ +..-.++++++++- .||++..-+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999998865 5999999999986 45556788888863 37888877763
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=347.45 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=177.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRF-------------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEE-------------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 567777653 23479999999999999999999999999999999999876 568999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++..|++||+.++.... .....+..++++++++.+++.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 22457999999998888899999999875432 2233444567888999999987777665 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999864 899999999975 5667789888886 58998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=353.39 Aligned_cols=218 Identities=26% Similarity=0.393 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888887542 3579999999999999999999999999999999999877 5689999999886
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
... ..++.++|++|++.+++.+||+||+.++...+.. ......+..++++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245689999999888899999999987543211 00122334456788999999987766654 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999975 5677789998886 58999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 864
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=353.70 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=173.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~~l 674 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 469999999999999999999999999999999999877 56899999998864321 234589999999999999
Q ss_pred CHHHHHHHHHhhccCCC-------CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 675 TVEESIVFSAWLRLSTQ-------IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
||+||+.++........ ....+..+.++++++.+++.+..++.+ +.|||||||||+|||||+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998754321110 012344567888999999987777665 369999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 228 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTPD 228 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCHH
Confidence 999999999999999999999999877999999999975 5667789888886 58999999864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=347.33 Aligned_cols=209 Identities=24% Similarity=0.424 Sum_probs=176.5
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRF-------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 567777643 23469999999999999999999999999999999999876 569999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH
Q 001048 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL 734 (1174)
Q Consensus 655 ~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv 734 (1174)
..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ++||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 34567899999998888999999998865443 1223344567888999999987766654 36999999999
Q ss_pred HHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 735 TIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 735 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999877899999999975 5667788888886 58988764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=352.10 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=179.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRY-------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEe-------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 567777643 23579999999999999999999999999999999999877 568999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 2 1 2346899999999999999999999865432 1223344556788999999987777665 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999975 6778889888886 599999988
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 64
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=373.48 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=185.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 3 ~L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 37788888754 24579999999999999999999999999999999999887 5689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.+|||+|++.+++.+||+||+.++...+... ........++++++++.+++.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 53 234677999999999989999999999864321100 1112334567899999999998888765 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+++|++|+|||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.+|+++++. +|++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 5668889988886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=347.53 Aligned_cols=215 Identities=26% Similarity=0.435 Sum_probs=179.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ....++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888754210 001269999999999999999999999999999999999877 56899999998864
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.++ .||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHH
Confidence 3 234567999999998888899999998865432 22334455678899999999877776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 9999999999999999999999999999999999999999877999999999975 5667789988886 58988754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=330.22 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=177.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|++..+ ++.++|+||||++++||+++|+||||+|||||||+|+|..+ +.+|+|.++|+++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6677777533 45789999999999999999999999999999999999887 45899999999986
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCH
Q 001048 654 QH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ..++-++||||....|+.+||+|||..++..+.. ++......+++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 53 2345689999999999999999999998654321 1111222566666664 4455566554 5999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.+... ...+.+|+.++|. .|++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999976 789999999865 5667889998887 599999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|+.++.
T Consensus 218 ~G~~~eL 224 (237)
T COG0410 218 SGTAAEL 224 (237)
T ss_pred ecCHHHH
Confidence 9997653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=362.28 Aligned_cols=214 Identities=22% Similarity=0.394 Sum_probs=184.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 6788888754 23579999999999999999999999999999999999877 56999999998864
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 QH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ..++.+||++|++.+++.+||.||+.+.+.++ ....++..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 32 34567999999999999999999999876553 22334445678899999999988887764 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||++||+||+++|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999985 6778889998887 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 217 ~~ 218 (301)
T TIGR03522 217 DE 218 (301)
T ss_pred HH
Confidence 54
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=347.19 Aligned_cols=194 Identities=28% Similarity=0.469 Sum_probs=165.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~Q~~~~~ 671 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.... .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999887 56899999998764311 245789999999998
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+.+||+||+.++...+ ........++++++++.+++.+..++.+ +.|||||||||+|||||+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 9999999999876433 1223344567889999999987766654 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 752 PTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|+++++.+ |++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-CcC
Confidence 9999999999999999999987 5899999999975 34 57888888864 653
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=347.29 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=179.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889998864210 011469999999999999999999999999999999999876 5699999999886
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... . ++.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.. ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256899999998888999999999865432 1233444567889999999987766654 36
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|+++++. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999975 5899999999975 345568887775 699
Q ss_pred EEEEcCC
Q 001048 805 IIYFGPL 811 (1174)
Q Consensus 805 ~v~~G~~ 811 (1174)
+++.|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=368.39 Aligned_cols=214 Identities=24% Similarity=0.413 Sum_probs=179.5
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
.+..++|+||++++. +++++|+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|++||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 344699999999763 24569999999999999999999999999999999998776 489999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCccccccc
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVG 719 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~ 719 (1174)
+++.+ ...|+.|||||||..+ ++.||.+||.|+.. ..+.++ +.++.+.. .+++..+|.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 98754 4678899999997666 56799999999742 223222 23333333 34567889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.|. .|||||||||+||||+++||+|+++|||||+||+.+++++++.+.+. ..|+|+|++.|+. +..+.||+++++
T Consensus 483 erG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 9876 49999999999999999999999999999999999999999999994 4599999999986 568899999999
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
.+ |++.+.|+.++
T Consensus 559 ~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 559 DN-GTVKEYGTHSE 571 (591)
T ss_pred EC-CeeEEeccHHH
Confidence 75 89999999854
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=347.53 Aligned_cols=201 Identities=27% Similarity=0.450 Sum_probs=172.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 579999999999999999999999999999999999877 569999999988643 2345679999999988889999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+..++++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 99999875433 12333445668889999999877776653 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 217 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSPQ 217 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCHH
Confidence 99999999999999876 699999999975 5666788888886 59999999864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=349.20 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=176.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC-----CCCeEEEEEEECC
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK-----TGGIIEGDIRIGG 649 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g 649 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYY-------------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEc-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 567777643 2347999999999999999999999999999999999987 5 5689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.++ .+||+||+.++...+. .....+..++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 88642 12356789999998877 7999999998754321 11122245667889999999876555431 24
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.+.+|+++++. +|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCE
Confidence 69999999999999999999999999999999999999999999999876 99999999975 5667789888887 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=350.44 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=181.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678887754210 001279999999999999999999999999999999999987 56899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 32 12467899999999988999999998875433 1233444567889999999987777654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999775 899999999975 5667789888886 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
+.|+.+
T Consensus 221 ~~~~~~ 226 (233)
T cd03258 221 EEGTVE 226 (233)
T ss_pred EecCHH
Confidence 998853
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=358.95 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=181.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 77888888642100 012479999999999999999999999999999999999887 56999999999875
Q ss_pred cc-----cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--CcccccccCCCCCC
Q 001048 654 QH-----TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD--GIKDSLVGLPGVNG 725 (1174)
Q Consensus 654 ~~-----~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 725 (1174)
.. ..++.+|||+|++. .++..||+||+.++.... ..+.++..++++++++.+||. +..|+.. +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 34567999999863 344689999999875432 234555667789999999996 5556554 46
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KGK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 999999999975 5667789999887 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=357.51 Aligned_cols=204 Identities=21% Similarity=0.411 Sum_probs=170.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccC---CCCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQN---DIHSPN 673 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~---~~~~~~ 673 (1174)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+ +.+|+|.+||+++...+ .+..++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999665 45899999999875432 34568999976 567889
Q ss_pred CCHHHHHHHHHhhccC-C-CCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 674 ITVEESIVFSAWLRLS-T-QIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
++|++|+.++...+.. . ..+.....+.+++..+.+++.- ..+..+ ..||||.||+|.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999988322211 1 2455566677888999888753 233444 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||.|.|.-++.+|.+++++++++|++||++|-++. |+...+||++++. +|+++..=+.++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~ 487 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREE 487 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999999975 8999999999997 599987655543
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=310.33 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=178.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++.++++..+.. ......||++|++.|++||.+||+|||||||||||-+++|+.. +.+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 555666554422 2345789999999999999999999999999999999999987 56999999999864
Q ss_pred cc------c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 QH------T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~~------~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. . +.+.+|+|+|...+.|++|..||+.....++.. ...+..+.+.+.++.+||.+-.+... .+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYP-----AQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCc-----ccc
Confidence 32 1 346799999999999999999999998877642 22334556788999999987665543 479
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|+|++-+. .|++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~-~G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLR-SGRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeee-ccee
Confidence 99999999999999999999999999999999999999999999875 499999999987 5688899999887 5898
Q ss_pred EE
Q 001048 806 IY 807 (1174)
Q Consensus 806 v~ 807 (1174)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 74
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=352.87 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=171.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 672 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~~~~~ 672 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 579999999999999999999999999999999999876 5689999999876432 23467899999998889
Q ss_pred CCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 673 NITVEESIVFSAWLRL-----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
.+||+||+.++..... ..........++++++++.+++.+..++.+ .+|||||||||+|||||+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 001111233456788999999987666654 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 231 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPPAE 231 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCHHH
Confidence 999999999999999999999999764 899999999986 5666889998887 599999998643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=343.65 Aligned_cols=206 Identities=28% Similarity=0.411 Sum_probs=174.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTY-------------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEE-------------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 567777643 23579999999999999999999999999999999999877 569999999987643
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 -HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 -~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
...++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 233557899999998888999999998875432 11 13457788999999877776543 699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999877899999999975 5666788888886 58998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=357.07 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=174.1
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQNDI 669 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~Q~~~ 669 (1174)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999887 5689999999876431 1 1356899999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
+++.+||+||+.+..... ........++++++++.++|.+..++.++ .||||||||++|||||+.+|++|||
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999999875432 12233445678889999999877777654 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999754 899999999975 5667789888886 59999999864
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=344.32 Aligned_cols=221 Identities=34% Similarity=0.630 Sum_probs=180.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 652 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 652 (1174)
+.|+|+++..... +..+++|+|+||++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|+++
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5678888765311 0136899999999999999999999999999999999998751 23589999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH-HHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE-VLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.....++.++|++|++.+++.+||+||+.++.....+.........+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999999999999999998765432221122222334555 888888877666654 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.+|+++++. +|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999999999999999999999999987799999999997446888999999987 58998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=393.51 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=177.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ ..++++|+|+|++++|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYR-----------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcC-----------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 699999999763 123579999999999999999999999999999999999988 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 722 (1174)
.+ ..+++.+|||+|++.++ +.|++|||.++.. .+. +.+.++++..++. +..||.+|+.|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLM-SGSIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccC-cccHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 54 35678899999998876 5699999987531 222 2344555555543 45688898766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+++++. +
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-A 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999886 589999999974 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 660 G~iv~~G~~~~ 670 (686)
T TIGR03797 660 GRVVQQGTYDE 670 (686)
T ss_pred CEEEEECCHHH
Confidence 99999999754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.04 Aligned_cols=232 Identities=19% Similarity=0.259 Sum_probs=185.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+.............+...+++||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 358899999876432110000001123579999999999999999999999999999999999887 568999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 652 KVQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
+... ..++.++||+|++ .++|.+||.||+.+...... ...++++..+++.++++.+++. +..++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~----- 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY----- 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----
Confidence 6432 2356799999997 57889999999998754321 1234555667788999999994 344554
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++||+++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~- 236 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY- 236 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 3479999999999999999999999999999999999999999999999865 999999999975 4556788888886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 237 ~G~ive~g~~~~ 248 (331)
T PRK15079 237 LGHAVELGTYDE 248 (331)
T ss_pred CCEEEEEcCHHH
Confidence 599999998754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=349.07 Aligned_cols=212 Identities=28% Similarity=0.405 Sum_probs=178.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADY-------------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEe-------------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5678887743 23579999999999999999999999999999999999877 56899999999864
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.. ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998865432 2233444567889999999987666654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPL 811 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~ 811 (1174)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+.+.+|+++++.+ +|++++.++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999864 5899999999975 56778899988874 5999998875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=348.67 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF-------------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678887754 23579999999999999999999999999999999999876 56899999998864
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 654 Q-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ...++.++|++|++.+++.+||+||+.++.... ......+..++++++++.+|+++..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 3 123567899999998888999999998864211 12233445567889999999987666654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 5566788888886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+.+
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=342.24 Aligned_cols=192 Identities=28% Similarity=0.413 Sum_probs=163.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-~~~~lTv~ 677 (1174)
+++|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.....++.++|++|++. .++.+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 579999999999999999999999999999999999877 569999999988644344567999999864 34568999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||+.++.... . ...++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998864321 1 112457889999999887777653 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999877999999999975 5666789988886 58864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.47 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... .....+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 77889998653110 012369999999999999999999999999999999999887 46899999987541
Q ss_pred c---------------------------ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Q 001048 654 Q---------------------------HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705 (1174)
Q Consensus 654 ~---------------------------~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 705 (1174)
. ...++.+|||+|++ ..++..||+||+.|+.... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 0 12356799999985 3445679999999875432 234555667789999
Q ss_pred HHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 001048 706 QTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784 (1174)
Q Consensus 706 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 784 (1174)
+.+||. +..++.. ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 4699999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 785 PSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 785 ~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
++ .+.+.+|+++++. +|++++.|++++
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~~ 251 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTYD 251 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 75 5678899998886 599999999754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=349.38 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 469999999999999999999999999999999999877 568999999987643 233557899999999998999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
|+||+.++.... .....+..+.++++++.+++.+ ..++.+ +.|||||||||+|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999875432 2233444567889999999985 555543 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999865 899999999975 5677889888886 59999998864
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.07 Aligned_cols=215 Identities=28% Similarity=0.385 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 77888887542 3469999999999999999999999999999999999877 56899999998764
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 Q-----------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~-----------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
. ...++.++|++|++.+++.+|++||+.++..... ........++++++++.+++.+..|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234578999999988888999999988643111 1233444567888999999987666654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999999877999999999975 5667789888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 220 G~i~~~~~~~ 229 (250)
T PRK11264 220 GRIVEQGPAK 229 (250)
T ss_pred CEEEEeCCHH
Confidence 8999998863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=351.54 Aligned_cols=219 Identities=26% Similarity=0.317 Sum_probs=178.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56777776431 13569999999999999999999999999999999999887 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRL-----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
.. ..++.++|++|++.+++.+||+||+.++..... .......+..++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 21 235679999999988899999999987531100 000112234566888999999987666654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++.
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~- 220 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK- 220 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-
Confidence 469999999999999999999999999999999999999999999999764 899999999975 5667889988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 221 ~G~i~~~~~~~~ 232 (243)
T TIGR02315 221 AGEIVFDGAPSE 232 (243)
T ss_pred CCEEEecCCHHH
Confidence 589999998643
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=346.14 Aligned_cols=200 Identities=26% Similarity=0.416 Sum_probs=168.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~~l 674 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 479999999999999999999999999999999999887 56899999998764321 245689999999999999
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
|++||+.++..... ..+..+.++++++.+ ++.+..++.+ +.||||||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999998754321 122344566777777 4666556554 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 217 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTAA 217 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCHH
Confidence 999999999999999999877899999999975 5677789888886 59999998753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=325.62 Aligned_cols=214 Identities=24% Similarity=0.408 Sum_probs=193.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+++++|+.+ .+++.+++|+||+++|||+++++|||||||||++++|.|..+ +++|+|.++|.+++
T Consensus 3 L~ie~vtK~-------------Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKS-------------FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhc-------------cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 667777653 356789999999999999999999999999999999999988 56999999999876
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
.. .+.+|||.|.+..+++.+||.|.|.|.+.++ ++++++.++.++.+|+.+++.+....++. +||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHH
Confidence 43 4567899999999999999999999999887 56788888899999999999988877764 699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|. +|+.|.+|+...
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~~ 216 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVED 216 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999986 7888999998886 599999999753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=341.74 Aligned_cols=207 Identities=27% Similarity=0.391 Sum_probs=173.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788877541 13479999999999999999999999999999999999876 56899999998864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.++...+ ........++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 23567899999998888999999999875432 1233344567889999999987666654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++.+ |+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-GR 214 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-CC
Confidence 99999999999999999999999999999999999999999999777999999999975 56667898888864 53
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=339.67 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=183.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCCCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDIHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~Q~~~~~~ 672 (1174)
.-++|+|++|+.||++.|||-||||||||+++|.++.+ |++|+|+++|.++... . +++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999988 6799999999986431 2 3467899999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+.||.||..|+..++ +.+++++++++.+.++.+||++..+... ++|||||||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 5678899999999999999999988874 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+|+|||--+.++++.|.+|.++ ++|||++|||++ +.+..-|++.+|. +|++|..|++++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~eI 252 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEEI 252 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHHH
Confidence 9999999999999999999765 899999999997 7788888888885 6999999999763
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=357.44 Aligned_cols=219 Identities=24% Similarity=0.331 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+++|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 77899988663110 012469999999999999999999999999999999999887 56899999999864
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
. ...++.+|||+|++. .+...||+||+.|+.... ..+..+..++++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 2 134567999999862 334579999999875422 234445556789999999996 5556654 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+++++. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 999999999975 5677889998886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999999864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=353.07 Aligned_cols=216 Identities=26% Similarity=0.348 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378899987542 12469999999999999999999999999999999999887 5689999999986
Q ss_pred Ccc---cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.+||++|++. .++..||.||+.|+.... ..+..+..++++++++.++|.+..++.+. .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCH
Confidence 432 23467999999863 456789999999874322 23344455678899999999877777653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4667889998886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+++
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 9864
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=318.11 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=182.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++.+|++|.+. ++.+|++||++++|||++||+||||||||||||.|+|... |.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56788888653 5789999999999999999999999999999999999887 45899999999875
Q ss_pred cc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 654 QH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 654 ~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...+..+.+||+..+-+..||+|-+.++..-.. ......+..+.++++++..++.+.+.+.. +.|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 42 345667999999888888999999999853221 11222345556788999999998887754 4699999
Q ss_pred HHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 731 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 731 rqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||.+||.|++ ++++|+||||||+||...+..++++.++++++|..|+++.||++. ...++|++++|. +||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999976 446999999999999999999999999999999999999999874 456677777775 699
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
++..|++++.
T Consensus 219 v~a~g~p~~v 228 (259)
T COG4559 219 VIASGSPQDV 228 (259)
T ss_pred EeecCCHHHh
Confidence 9999999764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=341.98 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=166.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 672 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~~~~~ 672 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999876 5689999999876431 23567999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
.+|++||+.+....+ ....++..++++++++.+++.+..++.. .+||||||||++|||||+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999875432 1233444567888999999987766654 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 753 TSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~-~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE-RGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 9999999999999999999777999999999975 5566789888886 4653
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=358.20 Aligned_cols=219 Identities=25% Similarity=0.356 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999998763110 012469999999999999999999999999999999999987 5689999999875
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC
Q 001048 653 VQ-------------------HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711 (1174)
Q Consensus 653 ~~-------------------~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 711 (1174)
.. ...++.++||+|++ .++ ..||+||+.++.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 12456799999986 344 469999998875321 234445556788999999996
Q ss_pred -CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHH
Q 001048 712 -GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIF 790 (1174)
Q Consensus 712 -~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~ 790 (1174)
+..++.. .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4555443 469999999999999999999999999999999999999999999999877999999999875 466
Q ss_pred HHhcceeEEecCcEEEEEcCCC
Q 001048 791 EAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 791 ~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+.+|+++++. +|++++.|+++
T Consensus 241 ~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEE-CCEEEEeCCHH
Confidence 7889998886 59999999874
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=351.88 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=181.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 48899998754 23579999999999999999999999999999999999887 5689999999876
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... ..++.++|++|++.+++.+||.||+.+...... ..+.....+++.++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988889999999988643211 1233334556788899999988777765 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5667789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=355.55 Aligned_cols=220 Identities=27% Similarity=0.366 Sum_probs=180.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988663110 011369999999999999999999999999999999999887 56999999999864
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
. ...++.+|||+|++. .+...||.||+.|+.... ..+..+..+++.++++.++|. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 1 124567999999862 334469999999875432 234455667788999999995 4555543 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999975 5667889998886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|++++
T Consensus 222 i~~~g~~~~ 230 (288)
T PRK13643 222 IISCGTPSD 230 (288)
T ss_pred EEEECCHHH
Confidence 999999754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=354.39 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=182.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999886521 012469999999999999999999999999999999999887 5699999999987
Q ss_pred Cc---ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++ ..++..||+||+.++.... ..+.++..++++++++.++|.+..+... ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456789999997 3667889999999875432 2345555677899999999987777664 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 44 6788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=362.76 Aligned_cols=214 Identities=29% Similarity=0.464 Sum_probs=179.7
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
++.++.+|+++.++ + ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~-----------~-g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP-----------D-GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC-----------C-CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCc
Confidence 45677789998643 2 2389999999999999999999999999999999999988 56999999998
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC------CcccccccCC
Q 001048 651 PKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD------GIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~~~~~~~~~ 721 (1174)
+..+ ..+++.++||+|++.+++ .|++|||.++.. +.++ +.+.++++..++. +..|+.+|+.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 7643 468899999999987764 699999998631 1222 3345555555553 4568888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
| ++|||||+|||++||||+++++++++||||++||.++++.|.+.|.++++ ++|||++|||+ .....+|++++++
T Consensus 454 G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld- 528 (559)
T COG4988 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD- 528 (559)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec-
Confidence 6 57999999999999999999999999999999999999999999999987 59999999987 4567789998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|.+++
T Consensus 529 ~G~l~~~g~~~~ 540 (559)
T COG4988 529 NGRLVEQGTHEE 540 (559)
T ss_pred CCceeccCCHHH
Confidence 599999999865
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=343.78 Aligned_cols=213 Identities=28% Similarity=0.429 Sum_probs=177.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAY-------------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 5677887754 23579999999999999999999999999999999999877 56899999998764
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 QH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+|+.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 32 22356899999988888999999998865432 22333445667889999999877776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ .+ ..+|+++++. +|++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 34 4588888886 589999988
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 216 ~~ 217 (236)
T TIGR03864 216 AA 217 (236)
T ss_pred HH
Confidence 63
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=340.45 Aligned_cols=209 Identities=23% Similarity=0.307 Sum_probs=174.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887541 13479999999999999999999999999999999999887 56999999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 31 13567899999998888999999999875432 2233444556788999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++++. +|+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 99999999999999999999999999999999999999999999877899999999975 5666778888886 58874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=384.08 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=175.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++... +++++|+|+|++++|||.+||+||||||||||+++|+|.+ + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3599999986431 2357999999999999999999999999999999999987 4 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.+| +.|++|||.++. ++.+.+ .++++++..+ +++..||.+|+.
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF-~~TI~eNI~~g~-----~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLP-HGTLRDNVLLGN-----PDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCC-CcCHHHHhhcCC-----CCCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 35678899999998776 569999999862 122332 2333444333 445679999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +++|+|++||+++ ..+.+|+++++.
T Consensus 483 G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~- 557 (588)
T PRK11174 483 AA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ- 557 (588)
T ss_pred CC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-
Confidence 65 599999999999999999999999999999999999999999999885 4899999999974 567899999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 558 ~G~i~e~G~~~e 569 (588)
T PRK11174 558 DGQIVQQGDYAE 569 (588)
T ss_pred CCeEeecCCHHH
Confidence 599999999754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=339.81 Aligned_cols=208 Identities=32% Similarity=0.504 Sum_probs=174.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~-------------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRY-------------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEE-------------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 567777643 2346999999999999 999999999999999999999877 568999999987643
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 H--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 ~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2 23567899999999888999999999865433 1223334566888999999987767654 369999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999976 599999999975 4556788888886 58998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=346.04 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAY-------------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEe-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 6778888753 23579999999999999999999999999999999999876 56899999998864
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 QH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..++.++|++|++.+++.+||+||+.+...... ....++..++++++++.+++.+..+... +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 32 134568999999988888999999987643221 1233344567888999999987666554 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeC
Confidence 999999999999999999999999999999999999999999877999999999975 6778889888886 58999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=353.48 Aligned_cols=220 Identities=24% Similarity=0.334 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888887542100 002469999999999999999999999999999999999887 5699999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQ-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++. .++.+||.||+.++.... ....++..++++++++.++|. +..++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 32 123457899999862 334689999998865432 233445566788999999996 56666653
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G 221 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HG 221 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877999999999975 5677889998886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=345.23 Aligned_cols=215 Identities=27% Similarity=0.370 Sum_probs=177.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 650 (1174)
++++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|+
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887542 346999999999999999999999999999999999987631 12899999999
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccCC
Q 001048 651 PKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 721 (1174)
++.. ...++.++|++|++.+++ .|++||+.+....+. .....+..+.++++++.+++. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 8642 123567999999988888 999999998754321 122344456788899999997 4444443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 217 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY- 217 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 46999999999999999999999999999999999999999999999977 499999999975 5667889888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 218 ~G~i~~~~~~~ 228 (247)
T TIGR00972 218 DGELVEYGPTE 228 (247)
T ss_pred CCEEEEeCCHH
Confidence 58999999864
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=351.73 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=182.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 488999998642 13469999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQ-----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~-----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. ...++.+||++|++. .++..||+||+.++.... ..+..+..++++++++.++|.+..++.. +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999863 345689999998865322 2334445567889999999988777765 469
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999975 4556789888886 5899
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 221 ~~~g~~~~ 228 (283)
T PRK13636 221 ILQGNPKE 228 (283)
T ss_pred EEeCCHHH
Confidence 99998753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=339.65 Aligned_cols=211 Identities=23% Similarity=0.362 Sum_probs=172.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5677887754210 012469999999999999999999999999999999999877 56899999998864
Q ss_pred ccc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 QHT------FA-RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~~~------~~-~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... .+ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 311 12 56899999998888999999999865432 1223334556788999999987766654 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+ +.+|+++++. +|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~-~G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMK-DGQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEe-CCEe
Confidence 999999999999999999999999999999999999999999999764 899999999975 34 5578888886 5887
Q ss_pred E
Q 001048 806 I 806 (1174)
Q Consensus 806 v 806 (1174)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 5
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=353.24 Aligned_cols=219 Identities=22% Similarity=0.364 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378889988653110 012469999999999999999999999999999999999887 5689999999886
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 653 VQ-------HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
.. ...++.+|||+|++ .+++ .||.||+.++.... ..+..+..++++++++.+||. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 13456799999985 3444 69999999875322 234445566788999999996 5556543
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|+++++.
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~- 220 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK- 220 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 46999999999999999999999999999999999999999999999976 4899999999975 5667889998887
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 221 ~G~i~~~g~~~ 231 (286)
T PRK13646 221 EGSIVSQTSPK 231 (286)
T ss_pred CCEEEEECCHH
Confidence 59999999864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=363.46 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=175.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~Q~~~~~ 671 (1174)
..+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.... .++.++|++|++.++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 458999999999999999999999999999999999887 56899999999864321 135699999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+++||+||+.++...+ ....++..++++++++.++|.+..++.. +.|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999976543 2234445567889999999988777765 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++. +|+++..|++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~~ 251 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPDE 251 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHHH
Confidence 9999999999999999999975 4899999999975 5677889998886 589999998754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=344.56 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=176.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988542 3579999999999999999999999999999999999877 5689999999875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++|++|++.+++.+||+||+.++.. . ...++++++++.+++.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345678999999988888999999987521 0 12345778999999987766654 469999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|+++++. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999975 5667789888886 5899988875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=339.16 Aligned_cols=207 Identities=28% Similarity=0.387 Sum_probs=172.9
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSF-------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEE-------------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 567777653 23469999999999999999999999999999999999877 568999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 655 -----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 655 -----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 1245679999999988889999999988643111 2233344567888999999987666664 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++.+ |++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 999999999999999999999999999999999999999999877899999999975 56678899988874 653
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=341.14 Aligned_cols=216 Identities=25% Similarity=0.322 Sum_probs=171.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..+.++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888754210 001269999999999999999999999999999999999876 56899999998864
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHH-HHHHHHHcCCC-CcccccccCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEF-VNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ..++.++|++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYP----- 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCc-----
Confidence 31 3456799999997 4667899999998865432111 11122222 35788888885 4555544
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~ 221 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-A 221 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-C
Confidence 369999999999999999999999999999999999999999999999876 899999999975 5556789888886 5
Q ss_pred cEEEEEc
Q 001048 803 GRIIYFG 809 (1174)
Q Consensus 803 G~~v~~G 809 (1174)
|++++.|
T Consensus 222 G~i~~~g 228 (228)
T cd03257 222 GKIVEEG 228 (228)
T ss_pred CEEEecC
Confidence 8988765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=346.44 Aligned_cols=216 Identities=22% Similarity=0.286 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378899988542 3579999999999999999999999999999999999887 5689999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcc-c
Q 001048 653 VQ----------------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK-D 715 (1174)
Q Consensus 653 ~~----------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 715 (1174)
.. ..+++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1234678999999999889999999987542111 123344566788999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 716 ~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
... ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+
T Consensus 148 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 433 469999999999999999999999999999999999999999999999877999999999975 56667898
Q ss_pred eeEEecCcEEEEEcCCC
Q 001048 796 LVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~ 812 (1174)
++++. +|++++.|+.+
T Consensus 222 i~~l~-~G~i~~~~~~~ 237 (257)
T PRK10619 222 VIFLH-QGKIEEEGAPE 237 (257)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 88886 59999998864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=388.88 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=176.7
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++ ..++++|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYS-----------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecC-----------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 3699999999653 223579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++ +.|++|||.++. + ..+. +.+.++++..++ .+..||.+|+.
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 753 35678899999998776 579999998742 1 2222 234444554444 34568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
| .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+|+++++.
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~- 685 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE- 685 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-
Confidence 6 46999999999999999999999999999999999999999999986 4899999999974 467799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 686 ~G~i~~~G~~~~ 697 (710)
T TIGR03796 686 RGKVVQRGTHEE 697 (710)
T ss_pred CCEEEEecCHHH
Confidence 599999999754
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=350.39 Aligned_cols=215 Identities=24% Similarity=0.339 Sum_probs=179.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887541 12469999999999999999999999999999999999877 56899999999864
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 654 Q----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ...++.++|++|++. .++..|+.||+.+..... ..+..+..++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 3 123567999999875 366789999998865332 2344455567889999999988777664 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|+++++. +|++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 44 6689888886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 217 g~~~~ 221 (274)
T PRK13644 217 GEPEN 221 (274)
T ss_pred CCHHH
Confidence 98643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=343.82 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=179.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367888887542 3479999999999999999999999999999999999877 5689999999875
Q ss_pred Cc---------ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 653 VQ---------HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
.. ...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 20 123457899999999999999999997532 221 1223334567888999999987767654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~ 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-N 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 369999999999999999999999999999999999999999999999877999999999975 5567789888887 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 217 g~i~~~~~~~ 226 (242)
T PRK11124 217 GHIVEQGDAS 226 (242)
T ss_pred CEEEEeCCHH
Confidence 9999999864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=337.09 Aligned_cols=225 Identities=22% Similarity=0.337 Sum_probs=184.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC-C--CeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-G--GIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~-~--~~~~G~i~~~g~ 650 (1174)
++.+||+.++... .+..++++||||++++||++||+|.|||||||+.+.|.|+.+ + ...+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4667777655432 123579999999999999999999999999999999999876 2 246799999999
Q ss_pred eCCc---c---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHHcCCCCcccccccC
Q 001048 651 PKVQ---H---T-FARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQI-DSKTKAEFVNEVLQTIELDGIKDSLVGL 720 (1174)
Q Consensus 651 ~~~~---~---~-~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 720 (1174)
++.. . . +.+.+++++|++ .+.|.+||.+.+.-....+. .. .+++..+++.++++.+|+.+.....-.+
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 7532 1 1 235799999996 67899999999887765432 22 3556677889999999998754444334
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|+||||+. -+.+.+|++.+|
T Consensus 151 --PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 151 --PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred --CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999986 477888988888
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. .|++|+.|+.++
T Consensus 228 Y-aG~iVE~g~~~~ 240 (316)
T COG0444 228 Y-AGRIVEEGPVEE 240 (316)
T ss_pred E-CcEEEEeCCHHH
Confidence 7 599999999754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=392.64 Aligned_cols=215 Identities=30% Similarity=0.451 Sum_probs=179.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+|++|.++ +++++|+|+||+++|||.+||+||||||||||+|+|.|.++ +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 4599999999653 14689999999999999999999999999999999999887 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHH-----HHHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEF-----VNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+.. ..+|+.++||+|++.+|. .||+|||.++.. +.++++..+. +++.++ .+++..||.+|+.|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G~ 464 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV 464 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCCCc
Confidence 754 457788999999888766 899999998742 1223222222 233333 345578999997665
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++||||++++|++|+||||||+||+.++..+.+.++++. +++|+|+++|+++ . ...+|+++++. +|
T Consensus 465 -~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-t-i~~aD~IiVl~-~G 539 (567)
T COG1132 465 -NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-T-IKNADRIIVLD-NG 539 (567)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-H-HHhCCEEEEEE-CC
Confidence 599999999999999999999999999999999999999999999887 5789999999985 3 45599999997 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 540 ~i~e~G~h~e 549 (567)
T COG1132 540 RIVERGTHEE 549 (567)
T ss_pred EEEEecCHHH
Confidence 9999999865
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=344.14 Aligned_cols=214 Identities=19% Similarity=0.328 Sum_probs=177.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY-------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee-------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 47889998854 23579999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LS 727 (1174)
... ..++.++|++|++.+++.+||+||+.++.... ...+..+.++++++.+ ++.+..++.. ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 13456999999998888899999998864221 1122334566777777 4655444433 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 6778889998887 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 218 ~~~~~~ 223 (237)
T PRK11614 218 EDTGDA 223 (237)
T ss_pred eCCHHH
Confidence 998743
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=388.01 Aligned_cols=212 Identities=23% Similarity=0.378 Sum_probs=176.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ .++++|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|++||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 699999999652 13579999999999999999999999999999999999987 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.+|||+|++.++ +.|++|||.++.. ...+.+ .+.++++..++ ++..||.+|+.|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~l~~~----~~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIF-SGSILENLLLGAK----ENVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceeh-hHHHHHHHhccCC----CCCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 45678899999998876 4699999988621 122222 23444444443 445689998765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|++||+++ ..+.+|+++++. +
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~ 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-H 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999985 4899999999975 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 684 G~i~~~G~~~~ 694 (708)
T TIGR01193 684 GKIIEQGSHDE 694 (708)
T ss_pred CEEEEECCHHH
Confidence 99999999743
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=355.86 Aligned_cols=223 Identities=27% Similarity=0.375 Sum_probs=183.0
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
......++|+||+|.++ +++++|+||||++.||+.+||+||||+||||+|++|.+..+ ..+|.|.+
T Consensus 532 ~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~i 597 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITI 597 (790)
T ss_pred cccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEE
Confidence 34456799999999763 35799999999999999999999999999999999988766 56999999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
||+++.. .+.|+.||.||||..+| +-|+..||.|+..-..+.++..+.+.+.++ -+.++..+..++.+|+.|.+
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak~~AsneevyaAAkAA~IH--drIl~fPegY~t~VGERGLk 674 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAKPSASNEEVYAAAKAAQIH--DRILQFPEGYNTRVGERGLK 674 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceee-cceeeeheeecCCCCChHHHHHHHHHhhHH--HHHhcCchhhhhhhhhcccc
Confidence 9999753 56788999999987765 569999999873221111111111222222 23467889999999998886
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||+++++|.+++|||.||+||..+++.|...|.++++ ++|.|++.|++| .+. .+|.++++. +|+
T Consensus 675 -LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS-Tiv-nAD~ILvi~-~G~ 749 (790)
T KOG0056|consen 675 -LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS-TIV-NADLILVIS-NGR 749 (790)
T ss_pred -cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh-hee-cccEEEEEe-CCe
Confidence 999999999999999999999999999999999999999999999986 899999999987 444 567777776 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
|++.|..+
T Consensus 750 IvErG~He 757 (790)
T KOG0056|consen 750 IVERGRHE 757 (790)
T ss_pred EeecCcHH
Confidence 99999874
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=350.17 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=181.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYP-----------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeC-----------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378999988542 113469999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc---cccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++ ..++..||.||+.++.... ....++..++++++++.+||.+..++..+ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 532 2356799999997 3667789999999875432 22344555678999999999887777653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999975 34 5689888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.94 Aligned_cols=216 Identities=25% Similarity=0.333 Sum_probs=177.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 358899998753 234699999999999999999999999999999999998753 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++ +|++||+.+..... .....+..++++++++.+++.+ ..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 987632 123567999999988877 89999999875432 1233334456788999988842 234333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+.+|+++++
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999865 899999999975 566778988888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 227 ~-~G~i~~~~~~~ 238 (258)
T PRK14268 227 L-MGELIEFGQTR 238 (258)
T ss_pred E-CCEEEEeCCHH
Confidence 6 59999999863
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.77 Aligned_cols=215 Identities=25% Similarity=0.320 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 1 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRF-------------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEe-------------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 3577887754 13479999999999999999999999999999999999877 56899999998763
Q ss_pred cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc
Q 001048 654 QH----------------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 654 ~~----------------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
.. ..++.++|++|++.+++..|+.||+.++.... ......+..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 21 23567999999999999999999998864211 1223344456788899999998766655
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999999865 899999999975 566788999
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+.+
T Consensus 218 ~~l~-~G~i~~~g~~~ 232 (252)
T TIGR03005 218 CFFD-KGRIVEQGKPD 232 (252)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999863
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=377.01 Aligned_cols=214 Identities=25% Similarity=0.377 Sum_probs=178.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ ..++++|+|+|+++++||.+||+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 341 ~i~~~~vsf~y~-----------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYP-----------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecC-----------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 599999999653 223579999999999999999999999999999999999987 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.+++ .|++|||.++. +...+. ++++++++..+ +++..||.+|+.|
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 54 346778999999988765 79999998752 111222 23444555444 4455789998766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||++ +..+.+|+++++. +
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~-~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVE-D 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999754 79999999997 4578899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 554 g~i~e~g~~~~ 564 (582)
T PRK11176 554 GEIVERGTHAE 564 (582)
T ss_pred CEEEEeCCHHH
Confidence 99999999753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=359.28 Aligned_cols=205 Identities=22% Similarity=0.357 Sum_probs=176.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee----CCc---cc---c-cceEEEEc
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQ---HT---F-ARISGYCE 665 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 665 (1174)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|++ +.. .. . ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34678999999999999999999999999999999999887 568999999963 221 11 1 25699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
|++.+++.+||+||+.++.... ..++.+..++++++++.+||.+..|+..+ +|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986443 23445566788999999999888777654 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
||||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999999999999999999865 999999999976 5678889988886 599999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=337.70 Aligned_cols=194 Identities=28% Similarity=0.444 Sum_probs=163.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~-~~~~l 674 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 579999999999999999999999999999999999877 568999999987643 224567899999874 36778
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
|++||+.++.... .....+..+.++++++.+++.+..++.+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865432 1223344556788999999987666654 3699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++.+ |+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999877999999999975 56666898888864 53
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=348.36 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888887542 12359999999999999999999999999999999999887 56999999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...++.++|++|++. .+...||.||+.+..... ..+.+...++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999863 345689999998765322 2344445567889999999987777765 369999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999975 5667889998886 5899999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 220 g~~~~ 224 (277)
T PRK13652 220 GTVEE 224 (277)
T ss_pred CCHHH
Confidence 98743
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=348.15 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=177.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRY-------------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEc-------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 5678888753 23569999999999999999999999999999999999887 56999999999863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q-----HTFARISGYCEQNDIH-SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...++.++|++|++.. ++..|+.||+.+..... .....+..++++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234678999998653 45568999998864332 2233444556788999999987777654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667789998886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=345.03 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRL-------------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 6788888754 23579999999999999999999999999999999999876 56899999998764
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. ...++.++|++|++.+++.+||+||+.++.... ....+...+.++++++.+++.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 3 123456899999988888899999998864321 11222334567889999999877777653 699999
Q ss_pred HHHHHHHHHhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 731 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 731 rqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||||+|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QG 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CC
Confidence 99999999999 5999999999999999999999999999997 56999999999975 5667889998887 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 218 ~i~~~~~~~~ 227 (258)
T PRK13548 218 RLVADGTPAE 227 (258)
T ss_pred EEEeeCCHHH
Confidence 9999998643
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=343.65 Aligned_cols=216 Identities=25% Similarity=0.291 Sum_probs=176.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988542 346999999999999999999999999999999999987632 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ +||+||+.++..... ........+.++++++.+++. +..++..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87632 124567999999987774 899999998754321 112333456678888888873 3344433
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999964 799999999975 5667789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+++
T Consensus 224 -~G~i~~~g~~~ 234 (254)
T PRK14273 224 -NGCIEEESSTD 234 (254)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=352.62 Aligned_cols=225 Identities=18% Similarity=0.247 Sum_probs=180.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-C-eEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-G-IIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 651 (1174)
++++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++ + +.+|+|.++|++
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7888998765321 1124699999999999999999999999999999999998752 1 468999999998
Q ss_pred CCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T----FARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~----~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . +++.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+..-. .
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~--~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV--Y 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--C
Confidence 6431 1 124699999997 47889999999876643321 23445566788999999999753221111 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++|++||||+|||+.++..++++|+++++ .|.|+|++||+++ .+.+.+|++++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999986 4999999999975 4567789988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 229 ~G~ive~g~~~~ 240 (326)
T PRK11022 229 AGQVVETGKAHD 240 (326)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=356.76 Aligned_cols=213 Identities=23% Similarity=0.360 Sum_probs=180.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|+++ ..+.++|+|+||++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~-----------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYP-----------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecC-----------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 689999999764 334579999999999999999999999999999999999887 5699999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 722 (1174)
.. ...++.+++++|...+ +..|+|+||.++.. +.+ .+.+.++++++||++ ..|+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~-----~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANP-----DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCC-----CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 3456788999997655 56799999987631 222 234667777777764 3567788766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
. .||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+-++ |+|+|++||+.. -.+.||+++++. +
T Consensus 473 ~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 473 R-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred C-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 4 6999999999999999999999999999999999999999999998765 999999999875 478899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+..+
T Consensus 548 Gkiie~G~~~~ 558 (573)
T COG4987 548 GKIIEEGTHAE 558 (573)
T ss_pred CeeeecCCHHh
Confidence 99999999854
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=342.77 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=178.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSF-------------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEE-------------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 37788888754 2346999999999999999999999999999999999987531 4689999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccCCC
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGLPG 722 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~ 722 (1174)
.++.. ...++.++|++|++.+++.+||+||+.++...+.. .....+..+.++++++.+++.+ ..|+.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 88643 23456799999998888899999999987543211 1123344566888999999854 234333
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|+++++. +
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~ 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-K 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 47999999999999999999999999999999999999999999999865 899999999975 5667889888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 9999999864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=336.16 Aligned_cols=198 Identities=24% Similarity=0.383 Sum_probs=170.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 579999999999999999999999999999999999876 56999999998764332 246899999998888899999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+....+. .. .+++.++++.+++.+..|..+ ..||||||||++||||++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9988654321 11 235678899999987777654 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++++.|++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999877999999999975 5667889988886 589999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=352.91 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=183.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++++|++..+... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|++
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899998765321 12357999999999999999999999999999999999987631 148999999998
Q ss_pred CCcc---c---c-cceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T---F-ARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~---~-~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . . ++.++||+|++ .+.+.+|+.+++........ .....+..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 2 24799999997 67899999999987654321 234455567788999999997643332 2 12
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++||+||||+|||..++..++++|++++++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4579999999999999999999999999999999999999999999999875 999999999975 4556789988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (330)
T PRK09473 237 AGRTMEYGNARD 248 (330)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=344.68 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999877 5699999999986
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC----------CCC--CHHHHHHHHHHHHHHcCCCCcccc
Q 001048 653 VQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLS----------TQI--DSKTKAEFVNEVLQTIELDGIKDS 716 (1174)
Q Consensus 653 ~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 716 (1174)
... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 233589999999999999999999986431100 000 112234567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcc
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 369999999999999999999999999999999999999999999999875 899999999975 56677898
Q ss_pred eeEEecCcEEEEEcCCCc
Q 001048 796 LVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~~ 813 (1174)
++++. +|++++.|++++
T Consensus 224 i~~l~-~g~i~~~~~~~~ 240 (255)
T PRK11300 224 IYVVN-QGTPLANGTPEE 240 (255)
T ss_pred EEEEE-CCeEEecCCHHH
Confidence 88886 599999998643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=341.55 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=178.7
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSF-------------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 6778888743 23479999999999999999999999999999999999876 56899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC--C---CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 654 QHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLS--T---QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
... .++.++|++|++.+++.+||+||+.++...... . ....++..++++++++.+++.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 321 234699999999999999999999986432100 0 01123345678899999999877776553
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++. +|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCe
Confidence 6999999999999999999999999999999999999999999999976 799999999975 5667789888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=337.78 Aligned_cols=199 Identities=26% Similarity=0.442 Sum_probs=163.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv 676 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 56899999998753 3456789999997653 34899
Q ss_pred HHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 677 EESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+||+.++....... ....+...++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998864321100 0112234456888999999987666654 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999877999999999975 5667789988885 44 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=386.48 Aligned_cols=214 Identities=28% Similarity=0.416 Sum_probs=178.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~-----------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYP-----------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeC-----------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3699999999763 123579999999999999999999999999999999999988 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++. .|++|||.++.. ..+.+ ++.++++..+ +++..||.+|+.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecCC
Confidence 754 356788999999987765 699999987521 12222 2344444443 345678999887
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.+|+++++.
T Consensus 599 G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~- 673 (694)
T TIGR03375 599 GR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMD- 673 (694)
T ss_pred CC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe-
Confidence 64 6999999999999999999999999999999999999999999999864 899999999975 568899999996
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 674 ~G~i~e~G~~~e 685 (694)
T TIGR03375 674 NGRIVADGPKDQ 685 (694)
T ss_pred CCEEEeeCCHHH
Confidence 599999999743
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=345.22 Aligned_cols=225 Identities=23% Similarity=0.316 Sum_probs=180.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+....... ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888887653110000 0113579999999999999999999999999999999999887 56899999998864
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+... .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345799999986 4667899999998764321 1122334456788999999995 5556654 3
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 69999999999999999999999999999999999999999999999865 899999999975 5666789988886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 228 ~i~~~g~~~~ 237 (265)
T TIGR02769 228 QIVEECDVAQ 237 (265)
T ss_pred EEEEECCHHH
Confidence 9999999753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=346.35 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=180.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 588999988542 123579999999999999999999999999999999999877 5689999999987
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ..+++.++|++|++. .++.+||+||+.++.... ....++..++++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999963 567899999998865322 2233444567889999999987777765 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|+|++||+++ ++ ..+|+++++. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999866 599999999986 34 5788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=341.09 Aligned_cols=219 Identities=22% Similarity=0.275 Sum_probs=175.0
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSV-------------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEE-------------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 567777654 2357999999999999999999999999999999999984211568999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC----CCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCC
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLST----QIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNG 725 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~ 725 (1174)
. . .+..++|++|++.+++.+|++||+.+........ ..+..+..++++++++.+++. +..++.++ .+
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 2 1 1234899999999999999999998764322110 112233346688899999997 45555432 14
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~ 804 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999877899999999975 45555 68888776 699
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (243)
T TIGR01978 223 IVKSGDVE 230 (243)
T ss_pred EEEecCHH
Confidence 99999863
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=384.30 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=174.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++. .+++++|+|+|++++|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+|+
T Consensus 478 ~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPN----------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCC----------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 5999999997631 123579999999999999999999999999999999999987 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.++ +.|++|||.++.. ..+ ++.+.++++..++ ++..||.+|+.|
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 54 34677899999998776 5799999988631 122 2334555555554 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|+||+||||||+||+.+++.+.+ .. ..+++|+|++||+++ ..+.+|+++++. +
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~-~ 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK-K 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999998 22 235899999999974 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 689 G~ive~Gt~~e 699 (711)
T TIGR00958 689 GSVVEMGTHKQ 699 (711)
T ss_pred CEEEEeeCHHH
Confidence 99999999754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=348.18 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=177.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367888888652100 001469999999999999999999999999999999999877 5689999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQ-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++. .++..||+||+.+..... ....++..++++++++.+++. ...++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP----- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 42 123567899999862 233479999998865332 123344456678899999996 3455554
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KG 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CC
Confidence 469999999999999999999999999999999999999999999999877999999999975 5667789888886 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (280)
T PRK13649 222 KLVLSGKPK 230 (280)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=342.67 Aligned_cols=218 Identities=25% Similarity=0.318 Sum_probs=177.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889987542 346999999999999999999999999999999999987642 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ..+++.++|++|++.+++.+||.||+.++...+.. ....++..++++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 98641 13456799999999998899999999987543210 1123334456788899888753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999875 699999999975 5667789988886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 223 -~G~i~~~~~~~ 233 (253)
T PRK14267 223 -LGKLIEVGPTR 233 (253)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=351.05 Aligned_cols=227 Identities=22% Similarity=0.274 Sum_probs=183.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+....... . ..+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~--~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF--K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc--c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 488999998664221100 0 0113579999999999999999999999999999999999877 4689999999986
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCC
Q 001048 653 VQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 723 (1174)
... .+++.++||+|++ .+.+.+||.+++........ ...+.+..+++.++++.+||.+ ..++..
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 432 2456799999997 57889999999987654321 2344556678899999999963 445543
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++|||||||||+|||||+.+|++|++||||+|||..++..++++|++++++ |.|+|++||+++ .+.+.+|++++|. +
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999764 999999999875 4556788888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 231 G~ive~g~~~~ 241 (327)
T PRK11308 231 GRCVEKGTKEQ 241 (327)
T ss_pred CEEEEECCHHH
Confidence 99999999754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=345.09 Aligned_cols=216 Identities=29% Similarity=0.384 Sum_probs=179.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56788887542 12469999999999999999999999999999999999887 56899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q-----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...++.++|++|++. .+...||.||+.++.... ....++..+++.++++.++|.+..++.++ .||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 123567999999863 334579999998764321 22344455678899999999888777654 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5666789888886 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 218 ~g~~~~ 223 (275)
T PRK13639 218 EGTPKE 223 (275)
T ss_pred eCCHHH
Confidence 998743
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=333.17 Aligned_cols=194 Identities=27% Similarity=0.401 Sum_probs=164.1
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999887 5689999999886432 234678999999998889999999987
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
+..... .. .+..+++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 643111 11 1233456788999999987777664 369999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 763 TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 763 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999764 899999999975 5667789988886 58988754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=345.12 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=181.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 588999987542 3479999999999999999999999999999999999877 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++.+++.+|+.||+.++...... .........++++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23456789999998888889999999875321100 001112334567889999999876676653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++++. +|++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 5667889998887 589999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|+.++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=335.00 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 48899998854210 001359999999999999999999999999999999999877 5689999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+..++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4321 1 246899999998889999999998865332 1233444567889999999987766654 36
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ . .+.+|+++++. +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-L-AARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H-HHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999764 899999999975 3 46689888886 588
Q ss_pred EEEE
Q 001048 805 IIYF 808 (1174)
Q Consensus 805 ~v~~ 808 (1174)
+++.
T Consensus 224 i~~~ 227 (228)
T PRK10584 224 LQEE 227 (228)
T ss_pred EEec
Confidence 8753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=343.28 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=180.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGY-------------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEE-------------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 6788888754 23579999999999999999999999999999999999876 56899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...++.++|++|++.+++.+|+.||+.++...... .........++++++++.+++.+..++.. ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999998888889999999875311000 01111233456788999999987777664 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999975 5778889999987 58999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=346.96 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=180.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE---EEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~---G~i~~~ 648 (1174)
..++++|+++.+. ..++++|+|+||+|++||+++|+||||||||||+++|+|..++ .+ |+|.++
T Consensus 4 ~~l~i~~l~~~~~-----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p--~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYP-----------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP--DDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcC-----------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CCCCCcEEEEC
Confidence 3588999988542 1124699999999999999999999999999999999998763 34 999999
Q ss_pred CeeCCcc---cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 649 GYPKVQH---TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 649 g~~~~~~---~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
|+++... ..++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.++|.+..++.. +
T Consensus 71 g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (282)
T PRK13640 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----A 142 (282)
T ss_pred CEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----c
Confidence 9987532 24567899999974 567899999998864322 2344555667889999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|
T Consensus 143 ~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G 219 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DG 219 (282)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999865 899999999975 34 6788888886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 220 ~i~~~g~~~ 228 (282)
T PRK13640 220 KLLAQGSPV 228 (282)
T ss_pred EEEEeCCHH
Confidence 999999874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=341.66 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=178.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378889987542 346999999999999999999999999999999999987532 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++.+||+||+.++...+. .....+..++++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999988899999999988754321 1123344566788899998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999964 699999999975 5667889998886
Q ss_pred -----cCcEEEEEcCCC
Q 001048 801 -----NGGRIIYFGPLG 812 (1174)
Q Consensus 801 -----~~G~~v~~G~~~ 812 (1174)
++|++++.|+++
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 369999999864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=343.61 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=180.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 7 ~l~i~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQ-----------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcC-----------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 588999988542 112469999999999999999999999999999999999987 5689999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..++++++++.+++.+..|+.. +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677889999998875322 2233444566788999999987777654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++. .+|+++++. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 444 488888886 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 223 ~g~~~~ 228 (269)
T PRK13648 223 EGTPTE 228 (269)
T ss_pred ecCHHH
Confidence 998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=337.79 Aligned_cols=211 Identities=23% Similarity=0.337 Sum_probs=173.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYY-------------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEe-------------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 567777643 23479999999999999999999999999999999999887 568999999988643
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCHH
Q 001048 655 HT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 655 ~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. .++.++|++|++.+++.+|++||+.++..... .. ..+..+++++.++ +.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 21 24568999999999899999999988754321 11 1233566777776 455555554 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999874 899999999975 5666788888886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|+.++
T Consensus 214 ~~~~~ 218 (230)
T TIGR03410 214 GAGDE 218 (230)
T ss_pred CCHHH
Confidence 98754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=343.45 Aligned_cols=221 Identities=26% Similarity=0.346 Sum_probs=180.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTF-------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEe-------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 47888998754 2357999999999999999999999999999999999987643 246999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 652 KVQ--------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-----QIDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 652 ~~~--------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
+.. ...++.++|++|++.+++.+||+||+.++.....+. ....++.+++++++++.+++.+..|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 632 122456899999998889999999998764211000 0112234567889999999987767654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 3 69999999999999999999999999999999999999999999999864 899999999975 4677888888
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
++. +|++++.|++++
T Consensus 225 ~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEE-CCEEEEeCCHHH
Confidence 886 589999998754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=336.47 Aligned_cols=201 Identities=29% Similarity=0.422 Sum_probs=169.5
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPN 673 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-Q~~~~~~~ 673 (1174)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|++... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999877 568999999987532 23456789998 55677788
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|++||+.+..... .....+..++++++++.+++.+..|+.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 22333445567889999999887777654 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999764 899999999975 5667789888886 58998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=330.80 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=167.5
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999887 568999999998643 2345679999999999888999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.+...... . ......++++++++.+++.+..++.. +.||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1 11223456788999999987767664 369999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 760 AAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999764 899999999975 5667789998886 589998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=342.76 Aligned_cols=218 Identities=28% Similarity=0.412 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSA-------------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 5677887754 23579999999999999999999999999999999999877 56899999998764
Q ss_pred cc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 QH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 31 2345689999998777889999999885311000 001112334567889999999877776653 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEec
Confidence 999999999999999999999999999999999999999999877899999999986 5667899998886 58999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=338.75 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC---CCCeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY-------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE-------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 47888888754 2356999999999999999999999999999999999962 3212489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|+.||+.++...+. ........+.++++++.+++.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 98643 123567999999988776 699999988754321 112223445678889999986422111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++++. +|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999985 4799999999975 5667889998886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999864
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=339.31 Aligned_cols=221 Identities=26% Similarity=0.348 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---~~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998542 3469999999999999999999999999999999999743 12368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|+++.. ...++.++|++|++.+++ .||+||+.++...+. ....+...++++++++.+++.+..+..... ..
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 988642 123567999999988877 599999998754321 112233456678889988885421111111 13
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~-~G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY-MG 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999954 799999999975 5667889998887 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 225 ~i~~~g~~~ 233 (253)
T PRK14242 225 KLIEVGPTE 233 (253)
T ss_pred EEEEeCCHH
Confidence 999998863
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=350.42 Aligned_cols=228 Identities=15% Similarity=0.227 Sum_probs=179.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 650 (1174)
.++++|+++.+... .+.+.+|+||||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37888998865321 1235799999999999999999999999999999999998652 246899999999
Q ss_pred eCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 651 PKVQH---T----FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQ---IDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 651 ~~~~~---~----~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
++... . +++.++||+|++. +.+.+||.+++........... ....+..+++.++++.+||.+..+..-
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 86431 1 1346999999975 5788999999986432111000 112234567889999999975322111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
. .+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|+|+|||+++ .+.+.+|+++
T Consensus 154 ~--~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 154 S--FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred C--CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1 13579999999999999999999999999999999999999999999999875 999999999975 5667789888
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
+|. +|++++.|+.++
T Consensus 231 vm~-~G~ive~g~~~~ 245 (330)
T PRK15093 231 VLY-CGQTVETAPSKE 245 (330)
T ss_pred EEE-CCEEEEECCHHH
Confidence 886 599999998744
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=335.29 Aligned_cols=198 Identities=24% Similarity=0.342 Sum_probs=167.6
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..... ..+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999887 568999999998653222 2489999999989999999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
+......+ .....+..++++++++.+++.+..++.+ .+||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86321111 2233444566888999999987777665 36999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 762 ATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 762 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998765 899999999975 5677789888887 5899988865
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=343.19 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=181.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 4688999988642 3479999999999999999999999999999999999877 568999999987
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
+.. ...++.++|++|++.+++..|++||+.++.....+ .....+...++++++++.+++.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 643 22345689999999888899999999875211100 00011233456788999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|+++++. +|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999864 899999999975 5778889998886 58999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=341.01 Aligned_cols=220 Identities=24% Similarity=0.325 Sum_probs=178.4
Q ss_pred CCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEE
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDI 645 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i 645 (1174)
.....++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445689999988542 2469999999999999999999999999999999999864 1 1468999
Q ss_pred EECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccc
Q 001048 646 RIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDS 716 (1174)
Q Consensus 646 ~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 716 (1174)
.++|+++.. ...++.++|++|++.+++ .|++||+.++..... ..+.++..++++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999988632 124567999999988776 899999988653321 1233444567888999998743 2333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. ...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999964 789999999975 566778888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 226 ~~l~-~G~i~~~g~~~ 240 (260)
T PRK10744 226 AFMY-LGELIEFGNTD 240 (260)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=325.84 Aligned_cols=196 Identities=29% Similarity=0.604 Sum_probs=162.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++|+|++|.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999987542 12467999999999999999999999999999999999987632 568999999998
Q ss_pred CCcc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+... ..++.++|++|++.+++.+||+||+.++.... .+..+ ..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 6432 34567999999999999999999998753210 22222 369999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|+++++. +|++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEec
Confidence 999999999999999999999999999999999999999999765 67777776654346778889888887 5899876
Q ss_pred c
Q 001048 809 G 809 (1174)
Q Consensus 809 G 809 (1174)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=335.72 Aligned_cols=213 Identities=27% Similarity=0.433 Sum_probs=179.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRF-------------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEE-------------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 567777643 23479999999999999999999999999999999999877 568999999988653
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++..|+.||+.+....+ ........+.++++++.+++.+..++.. +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23457899999998888899999998875432 1223334466788999999977667654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 899999999975 5677789888886 59999999864
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=345.15 Aligned_cols=221 Identities=22% Similarity=0.324 Sum_probs=181.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... +..++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478899988653110 0013569999999999999999999999999999999999987 5689999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQ----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.+||++|++. .+...||.||+.|+.... .....+..++++++++.+||.+..++.++ .||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 43 224567999999864 234569999999875422 22344556678899999999887777653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|+++++. +|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 44 4589888886 58999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 224 ~~g~~~~ 230 (280)
T PRK13633 224 MEGTPKE 230 (280)
T ss_pred EecCHHH
Confidence 9998743
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=372.93 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=185.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999876434689999999987
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.... .++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+++.+..++.++ +|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 4321 245689999999888999999999887532211112233445678899999999877777654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 5667788888886 5899999
Q ss_pred cCCCcc
Q 001048 809 GPLGQH 814 (1174)
Q Consensus 809 G~~~~~ 814 (1174)
|++++.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=332.72 Aligned_cols=212 Identities=27% Similarity=0.412 Sum_probs=179.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFY-------------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 567777643 23479999999999999999999999999999999999887 468999999997653
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.. ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 23467899999998888899999998875433 1223344556788999999987777665 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+++++. +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999865 899999999975 5677889998887 5899998875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=345.98 Aligned_cols=220 Identities=19% Similarity=0.328 Sum_probs=177.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 488999988652100 001359999999999999999999999999999999999887 5689999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 653 VQ--------HTFARISGYCEQNDIH-SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~--------~~~~~~~~~v~Q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
.. ...++.++|++|++.. +...|++||+.++.... ....++..++++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 1245678999998632 33469999999865321 223344456678899999994 5566554
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++.
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 369999999999999999999999999999999999999999999999764 899999999975 5677889988887
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 226 ~G~i~~~g~~~ 236 (289)
T PRK13645 226 EGKVISIGSPF 236 (289)
T ss_pred CCEEEEeCCHH
Confidence 58999999864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=339.15 Aligned_cols=225 Identities=24% Similarity=0.287 Sum_probs=180.6
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGD 644 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~ 644 (1174)
|.....++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445689999998542 35799999999999999999999999999999999998753 146899
Q ss_pred EEECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccccc
Q 001048 645 IRIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719 (1174)
Q Consensus 645 i~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 719 (1174)
|.++|+++.. ...++.++|++|++.+++ .||+||+.++.... .........+++.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999988642 123567999999988776 69999999875322 112233445667888999988532222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
. .++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++++
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 2357999999999999999999999999999999999999999999999864 799999999975 567888999888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 236 ~-~G~i~~~g~~~ 247 (267)
T PRK14237 236 Y-LGDLIEYDKTR 247 (267)
T ss_pred E-CCEEEEeCCHH
Confidence 6 59999999864
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=378.23 Aligned_cols=214 Identities=28% Similarity=0.421 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ ..++.+|+|+|+++++||.+||+|+||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~-----------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcC-----------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 3699999999653 223569999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++ +.|++||+.++. + ..+.+ .+.++++..+ +++..|+.+|+.
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf-~~ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLF-SRSIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeeh-hhhHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 754 35677899999998776 479999998742 1 22222 2333444433 344578888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++.
T Consensus 591 g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~- 665 (694)
T TIGR01846 591 G-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE- 665 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-
Confidence 5 4699999999999999999999999999999999999999999999985 5899999999975 456799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 666 ~G~i~~~g~~~~ 677 (694)
T TIGR01846 666 KGQIAESGRHEE 677 (694)
T ss_pred CCEEEEeCCHHH
Confidence 599999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=340.05 Aligned_cols=221 Identities=22% Similarity=0.281 Sum_probs=176.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 689999998542 34699999999999999999999999999999999998653 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ..+++.++|++|++.+++. ||.||+.++...+.. .....+..++++++++.+++.+........ .++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHE-PGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 88642 1245678999999887774 999999987543211 112233355678899999986421111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999865 789999999975 5567788888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 240 i~~~g~~~ 247 (267)
T PRK14235 240 LVEVGDTE 247 (267)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=382.12 Aligned_cols=211 Identities=24% Similarity=0.368 Sum_probs=178.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ .++++|+|+|+++++||.+||+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 589999999753 12469999999999999999999999999999999999988 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.+|+ .|++|||.++. ..+. ++++++++.+|+ ++..|+.+|+.|
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred hhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 53 356788999999998876 59999999862 1122 235556666654 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
. .||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +....+|+++++. +
T Consensus 475 ~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~-~ 549 (592)
T PRK10790 475 N-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH-R 549 (592)
T ss_pred C-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 4 6999999999999999999999999999999999999999999999864 79999999997 4567799999986 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 550 G~i~~~G~~~~ 560 (592)
T PRK10790 550 GQAVEQGTHQQ 560 (592)
T ss_pred CEEEEEcCHHH
Confidence 99999999754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=333.65 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=172.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 38999999999999999999999999999999999877 5689999999886532 23467899999998888999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.++.... .....+..+.+.++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+
T Consensus 91 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 91 NIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 998865332 2233444556788999999987777765 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.+
T Consensus 163 ~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 215 (235)
T cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 9999999999998765 999999999975 5667789999987 58999999864
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=301.57 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=173.2
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------------c---cccc
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------------H---TFAR 659 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------------~---~~~~ 659 (1174)
++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ |..|.|.+||+.+.. + ..|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356789999999999999999999999999999999987666 679999999976421 0 1233
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 660 ~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
..|+|+|+.+++.++||.||+.-+..-- -..++.+..++++..+..+|+.+..|... ..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHH
Confidence 4699999999999999999997653211 13467777888999999999988777542 3699999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 740 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+++.+. .|.+-+.|||++
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~q 238 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPEQ 238 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChHH
Confidence 999999999999999999999999999999999999999999997542 233456677775 699999999854
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=340.68 Aligned_cols=220 Identities=24% Similarity=0.381 Sum_probs=177.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC------eEEEEEEE
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------IIEGDIRI 647 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~------~~~G~i~~ 647 (1174)
++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVAR-------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEE-------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 5678887753 2357999999999999999999999999999999999987631 01899999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+|.++.. ...++.++|++|++..++.+||+||+.++...... ......+..++++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9988643 22345689999998766779999999875321100 01111233456788999999987666554
Q ss_pred CCCCHHHHHHHHHHHHhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHh
Q 001048 724 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~ 793 (1174)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999999876 899999999975 566788
Q ss_pred cceeEEecCcEEEEEcCCCc
Q 001048 794 DDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 794 d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+++++. +|++++.|++++
T Consensus 223 d~i~~l~-~G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLA-DGAIVAHGAPAD 241 (272)
T ss_pred CEEEEEE-CCeEEEecCHHH
Confidence 9999887 599999998754
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=336.56 Aligned_cols=210 Identities=25% Similarity=0.345 Sum_probs=174.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 47788888754 13469999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++.+++ .|++||+.+....+ . ...++++++++.+++. +..++.. ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 42 234567899999988776 69999998754321 1 1134577889999996 4455543 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999874 999999999975 5667789888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 98863
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=336.42 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=175.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 652 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 652 (1174)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFY-------------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEE-------------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 5677887754 234799999999999999999999999999999999998642 25689999999986
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ..++.++|++|++.+++ .|++||+.++...+... .......++++++++.+++.+........ ..+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 432 34567899999988876 69999999875432110 01233445678899999985321111111 13469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEEC
Confidence 99999999999999999999999999999999999999999865 899999999975 5667889888887 59999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+.+
T Consensus 224 ~~~ 226 (246)
T PRK14269 224 ESK 226 (246)
T ss_pred CHH
Confidence 863
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=322.20 Aligned_cols=190 Identities=57% Similarity=0.973 Sum_probs=160.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ..++++|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889998865311 012469999999999999999999999999999999999753225689999999986
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.++|++|++.+++.+|++||+.++... + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 34456789999999888999999999875310 0 39999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|+++++.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998634577889988886448999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.83 Aligned_cols=221 Identities=21% Similarity=0.300 Sum_probs=177.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899987542 3469999999999999999999999999999999999864 21 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+..+..... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 88642 1345679999999988888999999987643321 112333445678889999885421111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999976 689999999975 5667889888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14256 225 LVECGETK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=352.09 Aligned_cols=192 Identities=23% Similarity=0.410 Sum_probs=168.0
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999887 568999999987642 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.++.. ....++++++++.+++.+..++.. +.|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112356788999999988777765 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999875 899999999975 6778889988886 599999999754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=339.73 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=175.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4689999988542 34699999999999999999999999999999999998652 1468999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++ .||+||+.++...+ .... ...+.++++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234567999999988877 59999999876432 1111 23455677888887642 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 346999999999999999999999999999999999999999999999864 799999999975 677889999999
Q ss_pred ec----------CcEEEEEcCCC
Q 001048 800 KN----------GGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~----------~G~~v~~G~~~ 812 (1174)
.+ .|++++.|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 74 36789999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=327.86 Aligned_cols=189 Identities=25% Similarity=0.395 Sum_probs=161.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---c----cccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---H----TFARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~Q~~~~~ 671 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. . ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 579999999999999999999999999999999999887 568999999988431 1 2346799999999888
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+.+|++||+.+..... .....+..++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999875432 2233445567889999999987777765 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||+|||+.++..+.+.|+++.++|+|+|++||+++ ..+.+|+++++
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999974 45677777653
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.00 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ..++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999886421 112459999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++. .++..||.||+.++.... ....++..++++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567889999998865322 2233444567889999999987777654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|++++
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMK-AGEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 34 4688888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=353.43 Aligned_cols=196 Identities=23% Similarity=0.391 Sum_probs=169.8
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999887 5689999999886421 235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.++.... ...+..++++++++.++|.+..++.. ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12334556889999999988777765 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 218 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIAE 218 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHHH
Confidence 999999999999999875 899999999975 5667789988886 599999998743
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=333.12 Aligned_cols=212 Identities=24% Similarity=0.357 Sum_probs=175.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++. .|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56788887542 122 38999999999999999999999999999999877 56899999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...++++++++.+++.+..++.+. .|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHH
Confidence 32 224568999999999899999999987532110 11 12345568889999999877777653 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||+++.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999975 5667789888887 5999999986
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 4
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=378.35 Aligned_cols=214 Identities=25% Similarity=0.414 Sum_probs=179.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ .+++++|+|+|++++|||.+||+||||||||||+|+|+|..+ |.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~-----------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYP-----------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECC-----------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3699999999652 123469999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC------cccccccCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG------IKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~~~ 722 (1174)
+.+ ..+++.++||+|++.+++ .|++||+.++.. +.+ ++.+.++++.+++.+ ..||.+|+.+
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g 473 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence 654 346778999999987764 699999988631 112 234566777777643 4678888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+++++. +
T Consensus 474 -~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~ 548 (574)
T PRK11160 474 -RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-N 548 (574)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999986 4899999999985 356789999987 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 549 G~i~~~g~~~~ 559 (574)
T PRK11160 549 GQIIEQGTHQE 559 (574)
T ss_pred CeEEEeCCHHH
Confidence 99999999753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=344.46 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=180.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. .+.+.+|+|+||+|++||++||+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~-----------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYM-----------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEec-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998653 1234699999999999999999999999999999999997642 2468999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID-SKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
|+++.. ...++.++||||++.++ ..|++||+.|+.... ... .+...+.++++++.++|.+..++.++..+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 998742 23466799999998876 589999999875322 122 22233456788888887544344455443
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||+++ .+.+.+|+++++. +
T Consensus 224 -~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~ 299 (329)
T PRK14257 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-Q 299 (329)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999875 799999999975 5666789998886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 300 G~i~e~g~~~~ 310 (329)
T PRK14257 300 GWIEEAGETKT 310 (329)
T ss_pred CEEEEeCCHHH
Confidence 99999999743
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=319.80 Aligned_cols=190 Identities=49% Similarity=0.878 Sum_probs=161.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC--CCCeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 650 (1174)
.++++|+++.+.... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578999998653110 001257999999999999999999999999999999999987 6 56899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
++.....++.++|++|++.+++.+|++||+.+..... .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998888999999997643110 399999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++.++.+.+|+++++. +|++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999999987799999999998645677889998887 58998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.00 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=179.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+..+.. ....+.+++|+|+||++++||+++|+|||||||||||++|+|..+ |.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999986531100 000012469999999999999999999999999999999999987 5689999999886
Q ss_pred Ccc---cccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCC
Q 001048 653 VQH---TFARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~L 726 (1174)
... ..++.++|++|++. +.+.+|+.|++.+...... .....+..+.++++++.+++. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999874 5678899999988654321 123334456788899999994 5555543 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 5666789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+.+
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988763
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=335.97 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=175.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999988542 34699999999999999999999999999999999997642 1 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc----ccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI----KDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 98642 1335679999999888775 99999988653321 11233344567788888888532 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 799999999975 5677889888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+++
T Consensus 229 -~G~i~~~g~~~ 239 (259)
T PRK14274 229 -MGELVECNDTN 239 (259)
T ss_pred -CCEEEEECCHH
Confidence 59999999864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=344.98 Aligned_cols=223 Identities=29% Similarity=0.430 Sum_probs=186.6
Q ss_pred cCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE
Q 001048 566 ILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645 (1174)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i 645 (1174)
.+|.+...++++++++.. +..++++|+|+||++.+||.++|+||||||||||.|+|.|..+ |.+|.|
T Consensus 327 ~LP~P~g~L~Ve~l~~~P-----------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~V 393 (580)
T COG4618 327 PLPAPQGALSVERLTAAP-----------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSV 393 (580)
T ss_pred CCCCCCceeeEeeeeecC-----------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcE
Confidence 355556679999998832 1245799999999999999999999999999999999999887 579999
Q ss_pred EECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHH-----HHHHHHHHHHHHcCCCCccccc
Q 001048 646 RIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK-----TKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 646 ~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
++||.++.. ..+-+.+||.||+-.+|+ .||.|||.= ...+.+.+ .+.+.+++++ +.+.+.+||.
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~ 465 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGYDTR 465 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCccCc
Confidence 999988754 345678999999877765 699999962 22222222 2233455655 4678889999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|+.|. .||||||||+++||||-.+|.+++||||-|+||...+..+.+.|.+++++|.|+|+++|+|+ +...+|+++
T Consensus 466 iG~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkil 542 (580)
T COG4618 466 IGEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKIL 542 (580)
T ss_pred cCCCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceee
Confidence 998764 69999999999999999999999999999999999999999999999999999999999985 678889998
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
+|. +|++-.+|+.++
T Consensus 543 vl~-~G~~~~FG~r~e 557 (580)
T COG4618 543 VLQ-DGRIAAFGPREE 557 (580)
T ss_pred eec-CChHHhcCCHHH
Confidence 886 699999999854
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=368.08 Aligned_cols=220 Identities=27% Similarity=0.361 Sum_probs=184.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 37888998754 23579999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
... . .++.++|++|++.+++.+||+||+.++...... ...+..+.+++++++++.+++.+..|..++ .||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCC
Confidence 421 1 245689999999889999999999986432110 112233445678899999999887777654 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667889998887 599999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|++++.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.35 Aligned_cols=202 Identities=24% Similarity=0.345 Sum_probs=166.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKVQHTF-ARISGYCEQNDI--HSPNIT 675 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~Q~~~--~~~~lT 675 (1174)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987630 168999999998754332 357899999974 556789
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC---cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG---IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+.||+.+...... .......++++++++.+++.+ ..++.+ ..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987643221 112334566889999999973 344443 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999864 899999999975 5667889998886 59999999863
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=333.53 Aligned_cols=216 Identities=25% Similarity=0.354 Sum_probs=174.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 377889987542 346999999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++..... ....++..++++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 88642 124567899999988777 899999998754321 1123334566788888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 899999999975 5667789888887
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 220 -~G~i~~~~~~~ 230 (250)
T PRK14240 220 -NGEIVEFGDTV 230 (250)
T ss_pred -CCEEEEeCCHH
Confidence 58999998863
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=333.99 Aligned_cols=216 Identities=24% Similarity=0.292 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478889987542 346999999999999999999999999999999999986531 2689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+..++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 98642 123567899999988876 899999998754321 1122344456778899988742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999876 699999999975 5677789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14270 221 -MGDLIEFNKTE 231 (251)
T ss_pred -CCeEEEeCCHH
Confidence 59999999864
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=335.21 Aligned_cols=217 Identities=23% Similarity=0.330 Sum_probs=176.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-e--EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-I--IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987542 346999999999999999999999999999999999986532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++...+. .....+..+.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87632 123457999999988877 899999988754321 1223334456778888888742 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 347999999999999999999999999999999999999999999999865 699999999986 6778889998886
Q ss_pred c----CcEEEEEcCCC
Q 001048 801 N----GGRIIYFGPLG 812 (1174)
Q Consensus 801 ~----~G~~v~~G~~~ 812 (1174)
+ +|++++.|+++
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 59999999874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.35 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=174.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+..| .+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899987542 3469999999999999999999999999999999999743112 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ..+++.++|++|++.+++ .||+||+.++...+. ........+.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 123567999999988776 899999998754321 1122233456778888888743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999975 5677889998887
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+.+
T Consensus 222 -~G~i~~~g~~~ 232 (252)
T PRK14239 222 -DGDLIEYNDTK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=336.77 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=174.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999988542 34699999999999999999999999999999999998652 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. ||+||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87632 2345679999999887775 99999998754321 122 33456788899988853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999976 489999999975 5566788876554
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
++|++++.|+++
T Consensus 254 ~~G~i~~~g~~~ 265 (285)
T PRK14254 254 TGGELVEFDDTD 265 (285)
T ss_pred eCCEEEEeCCHH
Confidence 579999998863
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=326.29 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=163.0
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999877 568999999987532 1234578999999988889999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998864321 22334556788999999987666654 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999875 899999999975 5667789888887 58998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=332.62 Aligned_cols=221 Identities=21% Similarity=0.312 Sum_probs=174.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.-+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWY-------------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEE-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 35677887643 235799999999999999999999999999999999998642 1 3589999999
Q ss_pred eeCCcc-----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQH-----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~~-----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++... ..++.++|++|++.+++. |++||+.+....+. .........+.++++++.+++.+...+.... .+.
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chh
Confidence 876321 245678999999888775 99999988743321 1112233445678889999986522111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-SGR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999985 4899999999975 5667789998887 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 226 i~~~~~~~ 233 (251)
T PRK14244 226 IVEYNTTQ 233 (251)
T ss_pred EEEeCCHH
Confidence 99998863
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=332.82 Aligned_cols=220 Identities=24% Similarity=0.279 Sum_probs=174.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 47788888754 2357999999999999999999999999999999999986632 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 650 YPKVQ----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.++.. ...++.++|++|++.+++ .||.||+.++..... ........+++.+.++.+++.+........ ...+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87631 234567999999988877 899999988643221 112233345677788888875321111111 1346
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999976 699999999975 5677789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+.+
T Consensus 223 ~~~g~~~ 229 (249)
T PRK14253 223 VEHDDTQ 229 (249)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=332.40 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477888887542 3579999999999999999999999999999999999875422 479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++.+|+.||+.++..... ....++..+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 88642 1345678999999998888999999987653221 112233345566777777653 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 799999999975 5666789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14272 222 -VGDLVEHGPTD 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999999864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=332.68 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 650 (1174)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 58899998853 24699999999999999999999999999999999998763 116899999999
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC---cccccccCCCCC
Q 001048 651 PKVQHTF-ARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG---IKDSLVGLPGVN 724 (1174)
Q Consensus 651 ~~~~~~~-~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~ 724 (1174)
++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..++++++++.+++.+ ..++.+ .
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP-----F 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----c
Confidence 8753322 356899999974 4466899999876543221 111 2356788999999976 234433 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999764 899999999975 5667788888886 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=333.83 Aligned_cols=216 Identities=25% Similarity=0.311 Sum_probs=175.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 651 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 488899987542 3479999999999999999999999999999999999877 568999999987
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-ccccc
Q 001048 652 ----KVQH---T----FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSL 717 (1174)
Q Consensus 652 ----~~~~---~----~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 717 (1174)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999973 5677899999976532111 1122234556788999999863 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998765 899999999975 455678888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 223 ~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999864
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=367.94 Aligned_cols=220 Identities=25% Similarity=0.307 Sum_probs=183.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999886 5689999999886
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-CCC---CCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRL-STQ---IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.... .++.++||+|++.+++.+||+||+.++..... ... .+..+..++++++++.+|+.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 23468999999988899999999987532110 001 1233445678899999999887777654
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 69999999999999999999999999999999999999999999999878999999999975 5667788888886 599
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
+++.|++++.
T Consensus 223 i~~~g~~~~~ 232 (510)
T PRK09700 223 SVCSGMVSDV 232 (510)
T ss_pred EeeecchhhC
Confidence 9999998653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=373.59 Aligned_cols=215 Identities=30% Similarity=0.443 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .+++++|+|+|++++|||.++|+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~-----------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPP-----------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcC-----------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 599999999653 123579999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCCcccccccCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.. ..+++.++||+|++.+++ .|++||+.++.. ..+.++..+ ..++.++. +++..|+.+|+.+ .
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~~g-~ 453 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGE-----NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGPGG-A 453 (544)
T ss_pred hhCCHHHHhhheEEecCCccccc-ccHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHh--CccccccccCCCc-C
Confidence 53 345678999999988876 599999985421 122222111 12233332 3345678887755 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.++|+|+|++||+++ ..+.+|+++++. +|+
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~-~G~ 530 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQ-DGR 530 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCE
Confidence 69999999999999999999999999999999999999999999998766899999999975 467899999987 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+.+
T Consensus 531 i~~~g~~~ 538 (544)
T TIGR01842 531 IARFGERD 538 (544)
T ss_pred EEeeCCHH
Confidence 99999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=331.44 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=175.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 650 (1174)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78889987541 347999999999999999999999999999999999986521 26899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 651 PKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 651 ~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
++.. ...++.++|++|++.+++ .|++||+.++..... .......++.+++.++.+++.+..+.... ....+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7642 123567999999988877 899999998754321 11222344567788888888542111111 12347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~-~G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY-RGEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 799999999975 5677889988887 5899
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
+..|+++
T Consensus 224 ~~~g~~~ 230 (250)
T PRK14262 224 IEYGPTR 230 (250)
T ss_pred EEecCHH
Confidence 9999864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=336.16 Aligned_cols=219 Identities=24% Similarity=0.409 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588999987542 13579999999999999999999999999999999999877 5689999999886
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.....++.++|++|++.+. ...+++||+.++...... .........++++++++.+++.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999987542 235789998754211000 001112334567788999999887777654 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 566777877544 48999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=347.39 Aligned_cols=225 Identities=24% Similarity=0.322 Sum_probs=186.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 650 (1174)
-++++||+..+... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 47888888765432 12357999999999999999999999999999999999987643 35899999998
Q ss_pred eCCcc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 651 PKVQH-------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~~-------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
++... .+.+.++|++|++ .+.|.+||.+.+.-....+.. .+.++.++++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 65321 1335799999996 456779999998877665532 3367788889999999999886654 22
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.+.+|++++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999985 4999999999985 4667788888886
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
+|++|+.|++++
T Consensus 230 -~G~iVE~G~~~~ 241 (539)
T COG1123 230 -KGEIVETGPTEE 241 (539)
T ss_pred -CCEEEEecCHHH
Confidence 599999999865
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=365.90 Aligned_cols=214 Identities=28% Similarity=0.381 Sum_probs=177.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|+++ ..++++|+|+|+++++||.++|+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~-----------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYP-----------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcC-----------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeH
Confidence 599999999653 123579999999999999999999999999999999999987 5689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++|||.++. +.+.+. ++++++++.+++ ++..|+.+|+.|
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCcccc-cccHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 43 34677899999998765 569999998752 112222 335555665554 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||++ +..+.+|+++.+. +
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~-~ 542 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMD-D 542 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999875 479999999987 4678899999996 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 543 g~i~~~g~~~~ 553 (571)
T TIGR02203 543 GRIVERGTHNE 553 (571)
T ss_pred CEEEeeCCHHH
Confidence 99999999753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=322.74 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=171.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 58889998753 23469999999999999999999999999999999999887 5689999999887
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.....++.++|++|++.+++.+|++||+.+....+. . ...+.++++++.+++.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 543344568999999888888999999988654321 1 123456788899999877777653 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++.+.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999986 6778888887774
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=381.67 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhh---cCCc
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS 745 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~---~~p~ 745 (1174)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999987542211112233444556 47888999765 45554 369999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|+++.|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999975 348889999984 3689999999865
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=326.63 Aligned_cols=211 Identities=19% Similarity=0.322 Sum_probs=172.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 48899998754 23579999999999999999999999999999999999876 5689999999876
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++.+++ .|++||+.+....+.. . ...++++++++.+++. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 431 24567899999988776 5999999886433211 1 1234567899999985 3455554 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|+++++.+++..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999975 34 57999999965565666
Q ss_pred EcCC
Q 001048 808 FGPL 811 (1174)
Q Consensus 808 ~G~~ 811 (1174)
.|..
T Consensus 219 ~~~~ 222 (225)
T PRK10247 219 EARY 222 (225)
T ss_pred hhhh
Confidence 6653
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=287.60 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=178.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++.++++++.+ +..++|.||+++.++||.+.++||||||||||++.|.-+.. |.+|+..+.|...
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 35667776543 34689999999999999999999999999999999986554 5689999877542
Q ss_pred C------c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 653 V------Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~------~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+ + ...|+.+|+|+|+-.++|++||.||+.-+. .+. .+.++++...++.++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 2 1 235678999999999999999999997653 332 24567777888999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++.+.+++++..|.|-+++||..+ -..+.+.+++.+. +|
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme-~g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYME-NG 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeee-cC
Confidence 369999999999999999999999999999999999999999999999999999999999754 2334456666665 69
Q ss_pred EEEEEcCC
Q 001048 804 RIIYFGPL 811 (1174)
Q Consensus 804 ~~v~~G~~ 811 (1174)
+||+.|+.
T Consensus 218 ~ive~g~a 225 (242)
T COG4161 218 HIVEQGDA 225 (242)
T ss_pred eeEeecch
Confidence 99999986
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=333.46 Aligned_cols=221 Identities=24% Similarity=0.328 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999998542 34699999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|.++.. ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+......+. ..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 988642 1345679999999888775 99999988754321 112223345677888888885321111111 13
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|+++++. +|
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY-MG 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE-CC
Confidence 46999999999999999999999999999999999999999999999976 799999999975 5667789888886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 244 ~i~~~g~~~ 252 (272)
T PRK14236 244 KLVEYGDTD 252 (272)
T ss_pred EEEecCCHH
Confidence 999999864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=323.90 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=175.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5778888754210 012579999999999999999999999999999999999877 56999999999764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999998754321 1234445567889999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999976 4899999999974 567889888886 5775
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=333.98 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=177.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 588999998642 357999999999999999999999999999999999987631 4689999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 650 YPKVQ----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.++.. ...++.++|++|++.+++ .|++||+.++.... ......+..+.+.++++.+++.+..++.... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87642 134567899999988877 89999998864322 1123334445567888888886532222211 2347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DGRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 5677889888887 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=334.78 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=162.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYK-----------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecC-----------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 5677776431 123569999999999999999999999999999999999987 568999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHc--CCCCcccccccCCCCC
Q 001048 655 ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTI--ELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 655 ---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~ 724 (1174)
...++.++|++|++.++ ..||.||+.+... ........ ...++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 23456799999998765 4799999987431 11111111 1122334433 333322332 34
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ +.+|+++++. +|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~-~G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVME-KGR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999864 899999999975 34 5688888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 214 i~~~~~~~ 221 (237)
T cd03252 214 IVEQGSHD 221 (237)
T ss_pred EEEEcCHH
Confidence 99999864
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=317.88 Aligned_cols=179 Identities=25% Similarity=0.361 Sum_probs=151.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCC-CC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDI-HS 671 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~Q~~~-~~ 671 (1174)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3579999999999999999999999999999999999887 568999999988631 123457899999873 33
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+..||+||+.++.... .....+..++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4579999999865322 2233444566888999999987777765 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=330.69 Aligned_cols=220 Identities=26% Similarity=0.306 Sum_probs=174.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.....+ .+|+|.++|
T Consensus 6 ~i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWY-------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEE-------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 48889998854 23579999999999999999999999999999999999754212 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .||+||+.++...+. .....+.++.+.++++.+++.+........ ...
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHD-SAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhc-Chh
Confidence 88643 123567899999988877 499999998754331 112233345677888888875321111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~-~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999876 699999999975 5667789888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
++..|+++
T Consensus 226 i~~~g~~~ 233 (253)
T PRK14261 226 LIEFDKTT 233 (253)
T ss_pred EEEcCCHH
Confidence 99999863
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=330.36 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=174.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988542 34799999999999999999999999999999999998652 1 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .||+||+.++..... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87632 124567999999988775 799999988643321 1122233456778888888842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
..+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999975 5667788888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+.+
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14251 221 -NGDLIEAGPTE 231 (251)
T ss_pred -CCEEEEeCCHH
Confidence 59999998863
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=324.07 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=160.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999877 569999999986421 1112334577999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+..++++++++.+++.+..++.++ +||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999875432 12233445567888999999887777654 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 999999999999999877899999999975 5666788888886 58998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=334.98 Aligned_cols=217 Identities=22% Similarity=0.317 Sum_probs=174.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999988542 2469999999999999999999999999999999999743 1 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----Cccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++. ||.||+.++...+. ........+++.++++.+++. +..++.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987632 1245679999999888774 99999998754321 112223345677888888874 223333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 346999999999999999999999999999999999999999999999875 689999999975 566778999888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 255 ~-~G~i~~~g~~~ 266 (286)
T PRK14275 255 Y-EGVLVEHAPTA 266 (286)
T ss_pred E-CCEEEEeCCHH
Confidence 7 58999999864
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=320.58 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=164.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACER-------------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEE-------------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 5677787653 23469999999999999999999999999999999999877 56899999998864
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ...++.++|++|++.+++.+|+.||+.+....+. . ...++++++++.+|+.+..|+.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 3 2345678999999988899999999998754321 1 22356788999999987767654 36999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||++|||||+++|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ....|+.+.++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~~~ 201 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL--PVASDKVRKLR 201 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh--hhccCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999975 34446544443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.48 Aligned_cols=220 Identities=20% Similarity=0.266 Sum_probs=176.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 648 (1174)
..+..+++++++ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 346667776543 2457999999999999999999999999999999999987531 258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|+++.. ...++.++|++|++.++ .+|+.||+.++...+. . ..+..+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 988632 13456799999998776 6999999998754321 1 123345688889999885432222221 23
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe---
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK--- 800 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 800 (1174)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999964 799999999975 5677889999995
Q ss_pred ----cCcEEEEEcCCC
Q 001048 801 ----NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ----~~G~~v~~G~~~ 812 (1174)
++|++++.|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 469999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=332.14 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=173.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999988542 3579999999999999999999999999999999999643 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. |++||+.++..... ........+.+.+.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 88642 1235679999999888774 99999988643221 1112223455677888888742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999965 689999999975 5667889988886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 238 -~G~i~~~~~~~ 248 (268)
T PRK14248 238 -NGDLVEYDQTE 248 (268)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=343.31 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=192.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
-++.+|++.++ +..++|+||||++++||++||+|.||||||||+|+|+|.++ |++|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 47788887643 45789999999999999999999999999999999999988 6799999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRL-STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
... ....-|+.|+|+..+.|++||.|||.++...+. ...++.+...+++.++++.+++....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 532 234568999999999999999999998865443 2345777788889999999998655788876 599
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
+||||.|+|||||..+++||+||||||+|+......+.+.+++++++|.++|++||+++ ++++.+|++.+|. +|+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 8999999999997 599999
Q ss_pred EcCC-Cc
Q 001048 808 FGPL-GQ 813 (1174)
Q Consensus 808 ~G~~-~~ 813 (1174)
.++. ++
T Consensus 226 ~~~~~~~ 232 (500)
T COG1129 226 TRPTAAE 232 (500)
T ss_pred ecccccC
Confidence 9983 44
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=330.53 Aligned_cols=222 Identities=21% Similarity=0.304 Sum_probs=177.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999988542 246999999999999999999999999999999999987632 2479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|++||+.+...... .....+..+++.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 133567899999988877 899999988653321 112233345678889999875422112221 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecC-
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNG- 802 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~- 802 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++.+.+|+++++.++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999875 4899999999975 677788888888642
Q ss_pred ---cEEEEEcCCC
Q 001048 803 ---GRIIYFGPLG 812 (1174)
Q Consensus 803 ---G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.77 Aligned_cols=225 Identities=24% Similarity=0.361 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 77889988653100 000 0013579999999999999999999999999999999999876 56999999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. ..++.++|++|++ .+.+..|+.||+.+..... ......+..++++++++.+++. +..++.. +
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 31 2356799999997 3567899999997653211 1223344455788999999986 4555543 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|+++++. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 899999999975 5666789888886 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=363.22 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 48889998854 23579999999999999999999999999999999999887 5689999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.... .++.+||++|++.+++.+||+||+.++... ..+.+++++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 4321 224589999999899999999999875311 12334668889999999877777654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999975 5667789888886 5899999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=362.47 Aligned_cols=220 Identities=21% Similarity=0.324 Sum_probs=180.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF-------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe-------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5678888754 235799999999999999999999999999999999998764235899999998864
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCC
Q 001048 654 QHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIK-DSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LS 727 (1174)
... .++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+++.+.. ++.+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998889999999998864322111 122334456788999999997654 3444 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEee
Confidence 99999999999999999999999999999999999999999999888999999999975 5667789888886 589999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=319.08 Aligned_cols=185 Identities=28% Similarity=0.340 Sum_probs=158.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 3579999999999999999999999999999999999887 568999999987542 234567899999988888999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
++||+.+.... . ..++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 2345788899999987777654 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||+.++..+.+.|++++++|+|+|++||++. +....+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998877999999999975 566666666554
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.65 Aligned_cols=220 Identities=22% Similarity=0.302 Sum_probs=173.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888887542 346999999999999999999999999999999999987632 2369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.++.. ...++.++|++|++.+++. |++||+.++...+.. ...+...+.++++++.+++.+..+..... ...
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87642 1345679999999888774 999999987543211 11222345567778877775321111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|+++++. +|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCe
Confidence 799999999999999999999999999999999999999999999985 5899999999975 5667788888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.52 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=174.7
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEE
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIR 646 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~ 646 (1174)
++..++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 17 DHSVFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83 (274)
T ss_pred CCceEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence 34468999998854 2346999999999999999999999999999999999986421 2589999
Q ss_pred ECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccc
Q 001048 647 IGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSL 717 (1174)
Q Consensus 647 ~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 717 (1174)
++|+++.. ...++.++|++|++.+++ .||.||+.++...+. .. ....+.+++.++.+++.. ..++.
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99987632 134567999999988776 499999988643321 11 122344566777777642 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++
T Consensus 159 -----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 231 (274)
T PRK14265 159 -----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTA 231 (274)
T ss_pred -----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 346999999999999999999999999999999999999999999999975 799999999985 6778889999
Q ss_pred EEe--------cCcEEEEEcCCC
Q 001048 798 LMK--------NGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~--------~~G~~v~~G~~~ 812 (1174)
+|. ++|++++.|+++
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EEecccccccccCceEEEeCCHH
Confidence 996 269999999974
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=344.83 Aligned_cols=190 Identities=26% Similarity=0.354 Sum_probs=151.1
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..++++|+++.+. +++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc
Confidence 45689999988542 22689999999999999999999999999999999999776 44899887421
Q ss_pred eCCcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCH
Q 001048 651 PKVQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLST 728 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSg 728 (1174)
-.+||..|+. .+.+..|+.|++.-... ... +..+...+..+++..- ..+++ +.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~~~----e~~~r~~L~~f~F~~~~~~~~v-----~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGFP-----DGD----EQEVRAYLGRFGFTGEDQEKPV-----GVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhCc-----ccc----HHHHHHHHHHcCCChHHHhCch-----hhcCH
Confidence 2479999985 44477899998864321 111 4557788999988643 34444 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|||.||.+|+.++.+|.+|+|||||+.||..+...+.++|... .-|||+||||.. -+-..+++++.+.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~ 510 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVE 510 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEc
Confidence 9999999999999999999999999999999999999999876 469999999864 3445566666665
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=326.19 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=174.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999987541 3469999999999999999999999999999999999731125689999999886
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQH---TFAR-ISGYCEQNDIHSPNITVEESIVFSAWLRLS----TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~---~~~~-~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 432 1222 478999999899999999999875432110 0111223345677889999986 34455432
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~ 802 (1174)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 149999999999999999999999999999999999999999999999877999999999875 34344 67777775 6
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=327.59 Aligned_cols=216 Identities=23% Similarity=0.311 Sum_probs=172.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999988542 357999999999999999999999999999999999975311 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87632 134567999999988877 7999999986543211 112222345667777777642 22232
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.+|+++++.
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999976 589999999975 5667789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|++.
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14255 222 -TGNLIEFADTK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 59999998863
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.24 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=172.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999988542 3469999999999999999999999999999999999764 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++..... ..+.....+.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 88632 134567999999988776 599999998754321 112222334566777776543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999876 799999999975 5667788888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 241 -~G~i~~~g~~~ 251 (271)
T PRK14238 241 -NGYVNEYDDTD 251 (271)
T ss_pred -CCEEEEeCCHH
Confidence 59999999863
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=301.27 Aligned_cols=208 Identities=24% Similarity=0.408 Sum_probs=180.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~ 673 (1174)
+++.+|+|+|.++++|.+++++|||||||||||.+++++.+ ..+|+|.++|.++.. ....+.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 46789999999999999999999999999999999999877 469999999998754 3456677888898888889
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+|-+.|+..-. ..+...++.+..+++.++.++|++..|+... +||||||||.-||..++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999984322 2233445667789999999999999998874 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
++||-..+..+++.|++++++ |+||+++.||.+. ...+.|.++.+. +|+++..|++++.
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~ei 223 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDEI 223 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHHh
Confidence 999999999999999999987 9999999999863 344568888886 5999999999763
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=366.65 Aligned_cols=124 Identities=25% Similarity=0.379 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC---cEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p---~ill 748 (1174)
++||.|++.|...+. . .....+.++.+||.+. .+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999998875432 1 1224567888999753 45443 369999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ..+.+|+++.+. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457789988883 579999999874
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=372.37 Aligned_cols=212 Identities=27% Similarity=0.398 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ +++++|+|+|++++|||.++|+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~------------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYD------------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeC------------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEh
Confidence 599999999653 12469999999999999999999999999999999999988 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++||+.++. + +.+.+ .+.++++.++ +++..|+.+|+.+
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred hhCCHHHHHhheEEEecCcccc-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 54 34677899999998776 569999998752 1 22222 2334444444 3445688888754
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +..+.+|+++.+. +
T Consensus 470 -~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~-~ 544 (588)
T PRK13657 470 -RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFD-N 544 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999875 489999999997 4578899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (588)
T PRK13657 545 GRVVESGSFDE 555 (588)
T ss_pred CEEEEeCCHHH
Confidence 99999998643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=360.53 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=174.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~ 673 (1174)
++++|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 3579999999999999999999999999999999999877 5689999999986421 234568999999888899
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+||+.++.........+..+..++++++++.+++.+..++.++ +|||||||||+|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999876321101011233345678899999999877776653 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++..|++++.
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 999999999999999999878999999999975 5667788888886 5999999997653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=370.79 Aligned_cols=188 Identities=26% Similarity=0.409 Sum_probs=157.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++ +++++|+|+|+++++||.+||+||||||||||+|+|+|..+ |.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3699999999653 12369999999999999999999999999999999999987 569999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
+.+ ..+++.++||+|++.++ +.|++|||.++.. +.++ ++++++++..++ ++..||.+|+.|
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF-~~TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLF-DTTVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCcccc-cccHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 653 45667899999998876 5699999998621 1222 234455555544 456799999876
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
. .||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +++|+|+++|++
T Consensus 469 ~-~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 A-RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred C-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 599999999999999999999999999999999999999999999864 489999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.61 Aligned_cols=219 Identities=21% Similarity=0.268 Sum_probs=172.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999987542 346999999999999999999999999999999999975421 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|+.||+.++...+ ... ....++++++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 87631 234567999999988777 59999998865332 111 12334566777777774211111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec---
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN--- 801 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 801 (1174)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 6999999999999999999999999999999999999999999999976 589999999975 67788899988862
Q ss_pred -----CcEEEEEcCCC
Q 001048 802 -----GGRIIYFGPLG 812 (1174)
Q Consensus 802 -----~G~~v~~G~~~ 812 (1174)
.|++++.|+++
T Consensus 229 ~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 229 EGGGRYGYLVEFDRTE 244 (264)
T ss_pred cccccCceEEEeCCHH
Confidence 58999999864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=359.96 Aligned_cols=217 Identities=28% Similarity=0.359 Sum_probs=180.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 47888998754 23469999999999999999999999999999999999876 5689999999886
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++.+++.+||+||+.++............+..++++++++.+++.+..++.+ .+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 235679999999988899999999998632111111223344567889999999987666654 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999878999999999975 5667789888887 5899887
Q ss_pred cCC
Q 001048 809 GPL 811 (1174)
Q Consensus 809 G~~ 811 (1174)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=324.52 Aligned_cols=221 Identities=20% Similarity=0.287 Sum_probs=176.4
Q ss_pred ccEEEEeceEEEEeeCCc----ccc--ccc-ccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE
Q 001048 571 PLTVTFEDLRYYVDIPSA----MRK--NGF-NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG 643 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~----~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G 643 (1174)
+++++++||+.+++.... .++ .++ ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCce
Confidence 356888888866554211 111 011 1234679999999999999999999999999999999999887 5689
Q ss_pred EEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 644 DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 644 ~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+..+
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV----- 141 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 9999985 246677776777899999998764332 2233444556677888888887666654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G 219 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GG 219 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CC
Confidence 369999999999999999999999999999999999999999999999877999999999874 5667788888886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|+.++
T Consensus 220 ~i~~~g~~~~ 229 (264)
T PRK13546 220 KLKDYGELDD 229 (264)
T ss_pred EEEEeCCHHH
Confidence 9999998654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.67 Aligned_cols=197 Identities=28% Similarity=0.369 Sum_probs=157.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++ .|
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 369999999999999999999999999999999999987 568999999987542 234567899999987775 69
Q ss_pred HHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|+||+.+.... ....... ..+++.++.+ ++.+..+.. +..||||||||++|||||+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 1111111 1234445544 444433333 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ ..+|+++++. +|++++.|+.+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~~ 221 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLE-DGKIVERGTHE 221 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEec-CCeEeeeCCHH
Confidence 9999999999999999999999864 899999999985 44 4588888886 58999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=327.97 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=172.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 651 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378888887542 3468999999999999999999999999999999999877 568999999976
Q ss_pred ----CCccc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-ccccc
Q 001048 652 ----KVQHT-------FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSL 717 (1174)
Q Consensus 652 ----~~~~~-------~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 717 (1174)
+.... .++.++|++|++. +.+..|+.||+.+..... . ........+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 42211 2346899999874 446679999997643211 1 1111233467788999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998764 899999999975 566678888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 220 ~~l~-~G~i~~~~~~~ 234 (253)
T TIGR02323 220 LVMQ-QGRVVESGLTD 234 (253)
T ss_pred EEEE-CCEEEEECCHH
Confidence 8886 59999998863
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.85 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=168.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|+++... ..++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 3 79999999986432 2345689999998888889999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc-------CCcEEEEe
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 750 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~-------~p~illlD 750 (1174)
||+.+.... .....+..++++++++.+++.+..++.+ +.||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 1122334567889999999987666654 3699999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+.++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 219 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRDE 219 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999877999999999975 5778889888886 589999998643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=323.99 Aligned_cols=209 Identities=24% Similarity=0.415 Sum_probs=166.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ..++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC-----------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 67788887431 112469999999999999999999999999999999999876 46899999998763
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccccc------CCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG------LPGVN 724 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~ 724 (1174)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 123457899999988776 699999976421 111 2235567777787665554321 01234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|+++++. +|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~-~g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMD-SGR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEe-CCe
Confidence 79999999999999999999999999999999999999999999998764 89999999975 347888888886 589
Q ss_pred EEEEc
Q 001048 805 IIYFG 809 (1174)
Q Consensus 805 ~v~~G 809 (1174)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 88754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.34 Aligned_cols=223 Identities=25% Similarity=0.353 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.+.++|+++.+. ++.+|+++||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988542 34799999999999999999999999999999999998642 24689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC---------CCC-HHHHHHHHHHHHHHcCCCCcc
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST---------QID-SKTKAEFVNEVLQTIELDGIK 714 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 714 (1174)
.++.. ...++.++|++|++.+++ .||+||+.++....... ... .....+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 123567999999988776 59999999875321100 011 122345678888888875322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
+..... .++.|||||||||+|||||+++|+||||||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 222221 2357999999999999999999999999999999999999999999999976 589999999975 5667788
Q ss_pred ceeEEecCcEEEEEcCCC
Q 001048 795 DLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~~v~~G~~~ 812 (1174)
+++++.++|++++.|+++
T Consensus 268 ~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTD 285 (305)
T ss_pred EEEEEecCCEEEEeCCHH
Confidence 876554579999999864
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=308.90 Aligned_cols=158 Identities=30% Similarity=0.483 Sum_probs=141.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 469999999999999999999999999999999999876 468999999987643 2345679999999988888999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+. ||||||||++|||||+.+|++++|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|+.++..+.+.|++++++|.|+|++||+++ .+.+.+|+++++.+ |+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999877899999999975 56667898888864 65
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=317.74 Aligned_cols=196 Identities=26% Similarity=0.336 Sum_probs=162.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVR-------------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEE-------------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 6788888754 23469999999999999999999999999999999999877 56899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
....++.++|++|++.+++.+|++||+.+..... ... .+.++++++.+++.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 2225567899999888888999999998765332 111 234778999999987666554 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++ .. |+++-+
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~ 198 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDL 198 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEee
Confidence 99999999999999999999999999999999999998877999999999975 33 33 666555
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=369.59 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .+++.+|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||+++
T Consensus 313 ~I~~~~v~~~y~-----------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYP-----------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECC-----------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEH
Confidence 588999998653 223579999999999999999999999999999999999887 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++|++|++.+++ .|++||+.++.. ..+.+ .++++++..+ +++..|+.+|+.+
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g 449 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERG 449 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCC
Confidence 43 345678999999988765 699999987521 12222 2334444443 3455688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|+++++. +
T Consensus 450 -~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~-~ 524 (569)
T PRK10789 450 -VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ-H 524 (569)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999975 5899999999974 467799999886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 525 G~i~~~g~~~~ 535 (569)
T PRK10789 525 GHIAQRGNHDQ 535 (569)
T ss_pred CEEEEecCHHH
Confidence 99999999743
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=353.97 Aligned_cols=200 Identities=30% Similarity=0.445 Sum_probs=165.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ ..++++|+|+|++++|||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~-----------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYP-----------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECC-----------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 599999999653 123479999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.+++ .|++||+.++.. ..++ +.++++++..++. +..||.+|+.+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 54 346778999999988764 699999987531 1122 2344555555543 44688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
. .||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++
T Consensus 457 ~-~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 A-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 699999999999999999999999999999999999999999999875 5899999999874 46788988764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=291.31 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=168.3
Q ss_pred ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 001048 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 669 (1174)
Q Consensus 593 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~ 669 (1174)
+|...+.++|+++||.+++||..+|.||||||||||+|+++.+.+ |++|.+++.|++++. ..+|..++||.|.+.
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 344556789999999999999999999999999999999999887 679999999998754 457888999999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
+|+ .||++|+.|...++.... ..+...+.++.+++.+. .++.+ ..||||||||++|+|.|..-|+||+
T Consensus 88 Lfg-~tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILL 156 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILL 156 (223)
T ss_pred ccc-cchhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEE
Confidence 986 499999999877663221 23446678888888753 33333 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||+||+.+++.|-+.|.++. ++.+.++.+||+++ +..+.+|+++-+.. |++
T Consensus 157 LDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 157 LDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred ecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 999999999999999999999986 56899999999986 56788999999975 654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=324.91 Aligned_cols=220 Identities=24% Similarity=0.312 Sum_probs=173.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 477888887541 356999999999999999999999999999999999975311 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++. |+.||+.++..... ..+.+..++++.+.++.+++.+..+..... ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 88642 1235679999999888774 99999988643221 112233456678888888875321111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCe
Confidence 6999999999999999999999999999999999999999999999864 899999999975 5666667777775 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=324.35 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=172.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEE------EE
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGD------IR 646 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~------i~ 646 (1174)
.+.++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+ +.
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEE
Confidence 37888888753 24579999999999999999999999999999999999876 34554 44
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 647 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 647 ~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
++|.+... ...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+ ..+..
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 150 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-- 150 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC--
Confidence 54554321 2345678999999998889999999998753321 1123344566888999999863 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|+++++
T Consensus 151 ---~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 151 ---ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999975 556788988888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+.+
T Consensus 226 ~-~g~i~~~g~~~ 237 (257)
T PRK14246 226 Y-NGELVEWGSSN 237 (257)
T ss_pred E-CCEEEEECCHH
Confidence 6 58999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=323.91 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=169.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+++|+|..+..+.+|+|.++|+++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887542 34699999999999999999999999999999999998421156899999998764
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHh-hcc--C-CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH---T-FARISGYCEQNDIHSPNITVEESIVFSAW-LRL--S-TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. . .++.++|++|++.+++.+|+.+++.+... +.. . .........+++++.++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 31 1 22468999999888888888777654321 110 0 0011223345677888988885 34444331 2
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 59999999999999999999999999999999999999999999999877899999999875 34343 67777775 69
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=313.43 Aligned_cols=175 Identities=25% Similarity=0.340 Sum_probs=151.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... .+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 3579999999999999999999999999999999999877 5689999999875432 23467899999988888899
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.||+.+...... . + .+.++++++.+++.+..++.++ .||||||||++|||+++.+|++++|||||+|
T Consensus 90 v~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999988654321 1 1 2356788999999877776653 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
||+.++..+.+.|++++++|+|+|++||++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999999877999999999874
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.43 Aligned_cols=212 Identities=18% Similarity=0.277 Sum_probs=171.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++..+|+|+||+|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~-----------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYT-----------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeC-----------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 478999998653 123469999999999999999999999999999999999875 369999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-------ccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-------SLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~ 722 (1174)
.. ...++.++|++|++.+++ .|++||+.... ... .+.+.+.++.+||.+..+ +.+++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~- 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG- 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCC-
Confidence 43 235677999999998876 59999996321 111 134566777788865433 334332
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ . ...+|++++|. +
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~-i~~~dri~vl~-~ 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-A-MLECQRFLVIE-E 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-H-HHhCCEEEEec-C
Confidence 34699999999999999999999999999999999999999999999875 4899999999974 3 45688888886 5
Q ss_pred cEEEEEcCCCcc
Q 001048 803 GRIIYFGPLGQH 814 (1174)
Q Consensus 803 G~~v~~G~~~~~ 814 (1174)
|++++.|++++.
T Consensus 212 G~i~~~g~~~~l 223 (275)
T cd03289 212 NKVRQYDSIQKL 223 (275)
T ss_pred CeEeecCCHHHH
Confidence 999999998653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=366.03 Aligned_cols=212 Identities=27% Similarity=0.350 Sum_probs=173.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ +++++|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 334 ~i~~~~v~~~y~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFA------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECC------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 599999998642 12468999999999999999999999999999999999887 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++||+.++.. ..+.++ +.+.++.. .+.+..|+.+|+.+
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~ 469 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGRE-----GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERG 469 (585)
T ss_pred hhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCC
Confidence 53 34667899999998776 4799999987521 122222 22222222 23445677787765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++. +
T Consensus 470 -~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~-~ 544 (585)
T TIGR01192 470 -NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLD-Q 544 (585)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999875 4899999999974 457799999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (585)
T TIGR01192 545 GRLIEKGSFQE 555 (585)
T ss_pred CEEEEECCHHH
Confidence 89999999754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=314.00 Aligned_cols=194 Identities=22% Similarity=0.306 Sum_probs=161.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+.++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY-------------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe-------------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 5678888754 23579999999999999999999999999999999999887 56899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ..+++.++|++|+..+++.+||+||+.+.... . . ....++++++.+++.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----P--GAVGITELCRLFSLEHLIDYPCG-----LLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----c--chHHHHHHHHHcCCchhhhCChh-----hcCHHHH
Confidence 2 23456799999998888899999999886421 1 1 12357889999999776666543 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999864 445565443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=326.93 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=153.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999877 568999999987642 123456999999987765 69
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|+||+.+....+ ...+..+ .+.+.++.+ ++....+.. ++.|||||||||+|||+|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753211 1111111 112222222 222222222 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|+++++. +|++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NGQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999987 7999999999975 34 5788888886 5899999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=323.26 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=163.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 477888887541 12469999999999999999999999999999999999887 4689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc-------cccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS-------LVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 722 (1174)
.. ...++.++|++|++.+++. |++||+.+.... ... +.+++.++.+++.+..+. ..+. .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGE-N 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhc-C
Confidence 42 2345678999999877665 999999875211 111 122333333333322211 1111 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+ +.+|+++++. +
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-D 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-C
Confidence 35799999999999999999999999999999999999999999999986 4899999999975 34 5688888886 5
Q ss_pred cEEEEEcCC
Q 001048 803 GRIIYFGPL 811 (1174)
Q Consensus 803 G~~v~~G~~ 811 (1174)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 899998875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=378.55 Aligned_cols=213 Identities=23% Similarity=0.369 Sum_probs=169.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE-CCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI-GGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~-~g~~ 651 (1174)
.++++||++.++. .+++++|+|+||+|++||++||+||||||||||+++|+|.++ |.+|+|.+ +|.+
T Consensus 382 ~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDT----------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCC----------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 5999999997631 112479999999999999999999999999999999999987 56999999 4676
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcc---------CC------C----------------------
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRL---------ST------Q---------------------- 691 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~---------~~------~---------------------- 691 (1174)
+.. ..+++.+|||+|++.+++ .||+|||.++..... .. .
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 543 335678999999998876 599999998731000 00 0
Q ss_pred --C---------CHHHHHHHHHHHHHHcCC-------CCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 692 --I---------DSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 692 --~---------~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
. ......+.+.++++.+++ .+..||.+|..+ ..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 000112345666666654 445688888765 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 754 SGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|+||+.++..+.+.|+++++ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 99999999999999999975 5899999999975 3578999999976
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=310.91 Aligned_cols=192 Identities=24% Similarity=0.426 Sum_probs=167.7
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++|..+.-.++||-|+||||||||+|+|+|+.. |.+|.|.+||....+ ...+|.+|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777657999999999999999999999988 569999999975422 2346789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+.||.|+.... .....+++.+.+|+.|..++.- ..|||||||||+|+|||+++|++|++|||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986321 2344678899999999998864 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|-..+.+++-.|++++++ +..|+.+||.++ |+...+|++++|. +|++...|+.++
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e~ 215 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLEE 215 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHHH
Confidence 999999999999999876 889999999875 8889999999987 599999999754
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.86 Aligned_cols=216 Identities=25% Similarity=0.300 Sum_probs=173.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 648 (1174)
..++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 4588999998542 347999999999999999999999999999999999986532 268999999
Q ss_pred CeeCC---c----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHHcCCCC----cccc
Q 001048 649 GYPKV---Q----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID-SKTKAEFVNEVLQTIELDG----IKDS 716 (1174)
Q Consensus 649 g~~~~---~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~----~~~~ 716 (1174)
|.+.. . ...++.++|++|++.+++. |++||+.++.... ... ....++.++++++.+++.+ ..+.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 97642 1 1345678999999888875 9999998865322 111 1222455777788777642 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. ...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999975 699999999975 566788988
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+.+
T Consensus 231 ~~l~-~G~i~~~g~~~ 245 (265)
T PRK14252 231 AYMY-MGELIEFGATD 245 (265)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999863
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=357.36 Aligned_cols=215 Identities=23% Similarity=0.284 Sum_probs=174.9
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC------
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG------ 648 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~------ 648 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+..+.+|+|.++
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 567777653 2357999999999999999999999999999999999985211568999997
Q ss_pred -----------------CeeCC-------c------ccccceEEEEccC-CCCCCCCCHHHHHHHHHhhccCCCCCHHHH
Q 001048 649 -----------------GYPKV-------Q------HTFARISGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTK 697 (1174)
Q Consensus 649 -----------------g~~~~-------~------~~~~~~~~~v~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~ 697 (1174)
|.++. . ...++.++|++|+ +.+++.+||+||+.++.... .....+.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 22110 0 1134568999997 67788899999999875432 2233445
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 001048 698 AEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGR 776 (1174)
Q Consensus 698 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 776 (1174)
.++++++++.+++.+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999987777665 36999999999999999999999999999999999999999999999975 489
Q ss_pred EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 777 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEe-CCEEeeecCHH
Confidence 9999999975 4667789998886 58999988864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=317.15 Aligned_cols=209 Identities=23% Similarity=0.281 Sum_probs=164.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC--Ce-
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG--GY- 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 650 (1174)
++++|+++.+..... ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888876531100 0012479999999999999999999999999999999999877 468999998 42
Q ss_pred -eCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCC
Q 001048 651 -PKVQ---HT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLP 721 (1174)
Q Consensus 651 -~~~~---~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 721 (1174)
++.. .. .++.++|++|++.+++.+||+||+.+..... ........+++.++++.+++.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3321 11 1346899999998999999999998864322 12333345667889999999753 34443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++.+
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 469999999999999999999999999999999999999999999999877999999999853 344678887765
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=307.14 Aligned_cols=160 Identities=31% Similarity=0.468 Sum_probs=142.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~ 673 (1174)
+++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999877 568999999987643 2345679999999988888
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|++||+.+. ||||||||++|||||+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987542 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++.+ |+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 999999999999999999887 899999999975 55567898888864 53
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=362.28 Aligned_cols=221 Identities=21% Similarity=0.254 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+++++|+||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899999865311 113479999999999999999999999999999999999986 4589999988643
Q ss_pred C-------------cc---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-
Q 001048 653 V-------------QH---TF-ARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG- 712 (1174)
Q Consensus 653 ~-------------~~---~~-~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 712 (1174)
. .. .. ++.+|||+|++ .+++.+||.||+.++..... ..+..+..+++.++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 11 24689999997 67788999999999865321 2344455678889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHH
Q 001048 713 --IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDI 789 (1174)
Q Consensus 713 --~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~ 789 (1174)
..+..+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++ .+
T Consensus 159 ~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 234443 469999999999999999999999999999999999999999999999865 999999999975 56
Q ss_pred HHHhcceeEEecCcEEEEEcCCCc
Q 001048 790 FEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 790 ~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.+.+|++++|. +|++++.|++++
T Consensus 233 ~~~adri~vl~-~G~i~~~g~~~~ 255 (623)
T PRK10261 233 AEIADRVLVMY-QGEAVETGSVEQ 255 (623)
T ss_pred HHhCCEEEEee-CCeecccCCHHH
Confidence 67889888886 599999998753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=337.75 Aligned_cols=209 Identities=19% Similarity=0.284 Sum_probs=169.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 4667777664321 112469999999999999999999999999999999999887 5689999999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
++.+...+.+.+|++||+.+..... ..+..+..++++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222344567789999998754322 2233444556788999999987777665 369999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999999999999877999999999975 5667789888886 59999999875
Q ss_pred c
Q 001048 813 Q 813 (1174)
Q Consensus 813 ~ 813 (1174)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 4
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=324.11 Aligned_cols=197 Identities=27% Similarity=0.404 Sum_probs=154.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+++.++|++|++.+++ .|
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 90 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DT 90 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-ch
Confidence 469999999999999999999999999999999999877 568999999987643 234567899999987775 79
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
++||+.++.. ...... +.+.++..++.+ ..++....+ .+.||||||||++|||+|+.+|++|+
T Consensus 91 v~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 91 IGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGER-GLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred HHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhcC-CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999987531 111111 122222222221 112222221 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..+|+++++. +|++++.|+.+
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~-~g~i~~~~~~~ 220 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLK-DGRIVERGTHE 220 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEE-CCEEEeeCCHH
Confidence 9999999999999999999999877 999999999975 34 5588888886 58999988753
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=320.75 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=165.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 378889987542 3469999999999999999999999999999999999877 56899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPN--ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
..++|++|++.+++. .|+++++.+. .... .+++.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 4788876531 1111 234678899999987777654 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++ ++ ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l-~~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL-NH-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-CC-ceEeeC
Confidence 99999999999999999999999999999999999999999765 899999999975 566778888888 44 788999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=365.82 Aligned_cols=213 Identities=28% Similarity=0.377 Sum_probs=175.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~----------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPA----------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCC----------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 5899999996531 112579999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++|+||++.++ +.|++|||.++. + ..+. +.++++++..++ ++..|+.+|+.+
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLF-AASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred HhcCHHHHHHhceEEccCCccc-cccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 53 34567899999988765 579999998752 1 1222 234455555554 334577787754
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|+++.+. +
T Consensus 475 -~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~-~ 549 (576)
T TIGR02204 475 -VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMD-Q 549 (576)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999985 489999999987 4567899999997 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+.+
T Consensus 550 g~~~~~g~~~ 559 (576)
T TIGR02204 550 GRIVAQGTHA 559 (576)
T ss_pred CEEEeeecHH
Confidence 8999999964
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=292.36 Aligned_cols=229 Identities=24% Similarity=0.317 Sum_probs=192.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|+++++. ++++||++||++|++||+.+||||||||||||.++|+|...+.+++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478889988763 12589999999999999999999999999999999999988778999999999997
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 727 (1174)
... ..+.-+..-+|.|.-+|..|+.+.|..+...+........+..+.+++.++.++++. ..++.+.. ++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcC
Confidence 542 234457788999999999999999998765533221112345667888999999986 56666653 799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh--cceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF--DDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~~ 805 (1174)
||||||..|+..++.+|++.+||||-||||..+-+.|.+.+++++++|.+++++||.. .+.+.. |++-++. +|+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~-~GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLY-DGRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999999999999974 678887 8888887 5999
Q ss_pred EEEcCCCccchhhhhhhhhC
Q 001048 806 IYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 806 v~~G~~~~~~~~~~~~f~~~ 825 (1174)
+..|.+ ++.++++.-
T Consensus 224 v~sG~~-----el~~~le~~ 238 (251)
T COG0396 224 VKSGDP-----ELAEELEEK 238 (251)
T ss_pred EecCCH-----HHHHHHHHh
Confidence 999996 466666665
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=305.91 Aligned_cols=172 Identities=24% Similarity=0.454 Sum_probs=149.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~-----------------~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVK-----------------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEE-----------------eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 3777888762 18999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQH----TFARISGYCEQND---IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 532 2356799999984 57788999999976421
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|+++++. +|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~-~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMY-EGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEec-CCcC
Confidence 8999999999999999999999999999999999999999999999877899999999975 6777789888886 4653
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=318.24 Aligned_cols=209 Identities=21% Similarity=0.342 Sum_probs=165.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ..++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYR-----------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecC-----------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 367888887542 123479999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-------ccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-------SLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~ 722 (1174)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..+ +..+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEE-G 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccccc-C
Confidence 43 234567999999988665 69999986431 111 123445556666544322 11221 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ ..+|+++++. +
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-K 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-C
Confidence 357999999999999999999999999999999999999999999999864 689999999975 34 5588888886 5
Q ss_pred cEEEEEcC
Q 001048 803 GRIIYFGP 810 (1174)
Q Consensus 803 G~~v~~G~ 810 (1174)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=354.40 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+... ...+.+|+|+||++++||++||+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889998865310 01247999999999999999999999999999999999987631 3689999999
Q ss_pred eeCCcc------cc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc---cccc
Q 001048 650 YPKVQH------TF-ARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI---KDSL 717 (1174)
Q Consensus 650 ~~~~~~------~~-~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 717 (1174)
+++... .. ++.+||++|++. +.+.+|++||+.+..... ...+..+..++++++++.++|.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 986431 11 246899999864 567789999988654321 122344556778999999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999999865 899999999975 566778999
Q ss_pred eEEecCcEEEEEcCCCc
Q 001048 797 VLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~~ 813 (1174)
++|. +|++++.|++++
T Consensus 228 ~~l~-~G~i~~~g~~~~ 243 (529)
T PRK15134 228 AVMQ-NGRCVEQNRAAT 243 (529)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 8887 589999998743
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=305.60 Aligned_cols=175 Identities=25% Similarity=0.475 Sum_probs=148.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-----------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYP-----------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeC-----------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 5677776542 112369999999999999999999999999999999999877 568999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 --HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 --~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++.++|++|++.+++ .|++||+ ...|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 234567899999987765 6999986 1359999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|++||+++ . .+.+|+++++. +|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-G-IEHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999985 5899999999975 3 45688888886 58998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.61 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=189.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+++++++..+ +...+++|||+++++||++||+|.||||||||+++|.|.++ |++|+|.++|++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 46777777643 35689999999999999999999999999999999999988 6799999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.-. ..+..||+|+|+..+.+++||.||+..+..-......+.+...++++++.+..||.--.|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 432 2445689999999999999999999998643222344667778889999999999877888876 5999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||.|-++|.++|++|||||||+-|-|...+++++.|++++++|+|||++||.+. |+.+.+|++.+|. .|+++..
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR-~Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR-RGKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe-CCeEEee
Confidence 9999999999999999999999999999999999999999999999999999999986 8999999999997 5898876
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 66
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=303.43 Aligned_cols=169 Identities=28% Similarity=0.483 Sum_probs=145.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-----------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYP-----------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcC-----------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 5677776432 112469999999999999999999999999999999999877 568999999987643
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 655 ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 655 ---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
...++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567899999987776 5999986 899999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~G~i 173 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLE-DGRV 173 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCCC
Confidence 9999999999999999999999999999999999999999877999999999874 346788888886 4653
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.30 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=160.4
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESIVFSA 684 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~ 684 (1174)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.. ..++.++|++|++.++ +.+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4789999999999999999999999999877 56899999998753 2346789999998663 3489999998753
Q ss_pred hhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHH
Q 001048 685 WLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763 (1174)
Q Consensus 685 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 763 (1174)
..... .........+++.++++.+++.+..++.++ +||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122334568889999999877776653 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999975 577788988877 5 89999998754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=320.02 Aligned_cols=211 Identities=26% Similarity=0.396 Sum_probs=163.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPT----------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 5889999886531 012469999999999999999999999999999999999877 5689999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc--CCCCcccccccCCCCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI--ELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.++|++|++.+++ .||+||+.++.................+++.++.+ |+.+..+..+ +.||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCC
Confidence 32 223467899999987765 69999998753211000000011112346677777 6665544443 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+ +.+|+++++. +|++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~g~i 226 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLD-GGRI 226 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEec-CCcC
Confidence 9999999999999999999999999999999999999999999865 699999999975 44 5688888886 4653
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=299.79 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=182.6
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
...-++++|++... +++++|+|+|++|+|||-.+|+|||||||||||++++|..+ +.+|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~--pssg~~~~~G 92 (257)
T COG1119 28 NEPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP--PSSGDVTLLG 92 (257)
T ss_pred CcceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC--CCCCceeeee
Confidence 34568999998743 46899999999999999999999999999999999999887 4589999999
Q ss_pred eeCCc----ccccceEEEEccC--CCCCCCCCHHHHHHHHH--hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 650 YPKVQ----HTFARISGYCEQN--DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~--~~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
++... .+.|+.||+|.-+ ..+.++.+|+|-+.-+. ..........++..+++..+++.+|+.+.+|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 87643 3467889999832 34456778888776432 12222212335567788999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHHhcceeEE
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.||-||||||-|||||+++|++||||||++|||...++.+.+.|.+++.. +.++|+|||+++ ++-..+++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 59999999999999999999999999999999999999999999999865 889999999986 888899999998
Q ss_pred ecCcEEEEEcC
Q 001048 800 KNGGRIIYFGP 810 (1174)
Q Consensus 800 ~~~G~~v~~G~ 810 (1174)
. +|+++++|.
T Consensus 247 ~-~g~v~~~g~ 256 (257)
T COG1119 247 K-EGEVVAQGK 256 (257)
T ss_pred e-CCceeeccc
Confidence 7 589999874
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=307.41 Aligned_cols=183 Identities=26% Similarity=0.335 Sum_probs=152.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.+||+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSV-------------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEe-------------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 567777643 1346999999999999999999999999999999999984212568999999998753
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. . .++.++|++|++.+++..|+++++ +.. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 2 1 234589999998888888888765 000 12599999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH-HhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+ .+|+++++. +|++++.|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999975 3444 689888886 58999999
Q ss_pred CC
Q 001048 810 PL 811 (1174)
Q Consensus 810 ~~ 811 (1174)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 54
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=351.18 Aligned_cols=124 Identities=25% Similarity=0.365 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhc---CCcEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVA---NPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~---~p~ill 748 (1174)
++||.|.+.|...+. . .....++++.+||... .+..+ +.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888865432 1 1124567888998653 34443 4699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ +.+.+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457789888883 579999999874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=307.94 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=159.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ..++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYA-----------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeC-----------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 478889888542 112469999999999999999999999999999999999877 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +.. ...||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~~-----~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SEG-----GLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cCC-----CCcCCHH
Confidence 32 224567999999987765 59999996531 1111 12333333 1 222 3479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|+++++. +|++++.|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~-~g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMD-AGEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999875 34 4588888887 58999888
Q ss_pred CC
Q 001048 810 PL 811 (1174)
Q Consensus 810 ~~ 811 (1174)
++
T Consensus 206 ~~ 207 (207)
T cd03369 206 HP 207 (207)
T ss_pred CC
Confidence 63
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.12 Aligned_cols=223 Identities=27% Similarity=0.410 Sum_probs=182.2
Q ss_pred CCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 648 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 648 (1174)
.....+.|++++|.+. +++++|+|+||++++|+.+|++||||+||||++++|-+.++ +.+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 3445699999999653 35789999999999999999999999999999999998777 569999999
Q ss_pred CeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 649 GYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 649 g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
|+++.. ...|+.||.|||+..++ +-|+..|+.|+..-....+.....+...+...++ .+++..|+.+|+.|.+
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk- 399 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK- 399 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-
Confidence 998643 46788899999987764 6799999998743211111111112223344444 4577889999998875
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||+++++|+||+|||.||+||..+++.|+..|+++. .|+|.+++.|++| .+ -.+|.++++. +|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-ti-~~adeiivl~-~g~i 475 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-TI-IDADEIIVLD-NGRI 475 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-hc-cCCceEEEee-CCEE
Confidence 99999999999999999999999999999999999999999999987 5899999999987 34 4578898887 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|+.++
T Consensus 476 ~erg~h~~ 483 (497)
T COG5265 476 VERGTHEE 483 (497)
T ss_pred EecCcHHH
Confidence 99999743
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=322.52 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=164.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. ..++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++
T Consensus 18 ~~i~~~~l~~~~~-----------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYE-----------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeC-----------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 3589999988652 112469999999999999999999999999999999999877 568999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-------ccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-------KDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 721 (1174)
+.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++..++.+. .++..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 643 234567899999987765 59999985321 1111 112222232232221 1222322
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|+|++||+++ .+ ..+|+++++.
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~- 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS- 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE-
Confidence 235799999999999999999999999999999999999999999999875 4899999999986 34 4588888887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 229 ~G~i~~~g~~~~ 240 (257)
T cd03288 229 RGILVECDTPEN 240 (257)
T ss_pred CCEEEEeCCHHH
Confidence 599999998643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=349.84 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=172.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRL-------------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEc-------------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 7788998854 23469999999999999999999999999999999999877 56899999987653
Q ss_pred c---ccccceEEEEccCCCC--C------CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 Q---HTFARISGYCEQNDIH--S------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
. ...++.++|++|++.. + ..+|++|++.+. .+..++++++++.+++.+..++.++
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~--- 134 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK--- 134 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc---
Confidence 2 1234558999998543 1 147888887532 1224567889999999887777654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~-~ 210 (490)
T PRK10938 135 --YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA-D 210 (490)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE-C
Confidence 69999999999999999999999999999999999999999999999877999999999975 5667789998886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|+++..|++++
T Consensus 211 G~i~~~~~~~~ 221 (490)
T PRK10938 211 CTLAETGEREE 221 (490)
T ss_pred CEEEEeCCHHH
Confidence 99999998643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=306.20 Aligned_cols=221 Identities=20% Similarity=0.355 Sum_probs=182.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++.... .+.+.+++|||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|++
T Consensus 256 ~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~ 321 (501)
T COG3845 256 VVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKD 321 (501)
T ss_pred eEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEe
Confidence 3588888886421 12478999999999999999999999999999999999876 346999999998
Q ss_pred C-C---ccc-ccceEEEEccCC---CCCCCCCHHHHHHHHHhhcc----CCCCCHHHHHHHHHHHHHHcCCCCc-ccccc
Q 001048 652 K-V---QHT-FARISGYCEQND---IHSPNITVEESIVFSAWLRL----STQIDSKTKAEFVNEVLQTIELDGI-KDSLV 718 (1174)
Q Consensus 652 ~-~---~~~-~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~ 718 (1174)
+ . ... .+..++|||.|. .+.+.+|+.||+.+...-+. ....+.....+..+++++.++.... .+..
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~- 400 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP- 400 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-
Confidence 6 2 122 234589999874 45689999999998753221 1124556777888999999987632 2222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
.+.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.+++++|+.|++++-+++ ++++.+|++.+
T Consensus 401 ----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaV 475 (501)
T COG3845 401 ----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAV 475 (501)
T ss_pred ----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeee
Confidence 3579999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred EecCcEEEEEcCCCc
Q 001048 799 MKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 799 l~~~G~~v~~G~~~~ 813 (1174)
+. +|+++...++++
T Consensus 476 i~-~Gri~~~~~~~~ 489 (501)
T COG3845 476 IY-EGRIVGIVPPEE 489 (501)
T ss_pred ee-CCceeccccccc
Confidence 98 599998888764
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=302.48 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=152.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++.+++ +||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788887541 234555 999999999999999999999999999999877 56899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
... ++.++|++|++.+++..||+||+.+..... . ..++++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345899999988888999999998865322 1 1345677888899877666654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++|||||+.+|++++|||||+|||+.++..+.+.|++..++|+|+|++||+++
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877667999999999975
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=301.68 Aligned_cols=165 Identities=30% Similarity=0.495 Sum_probs=139.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... .+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 469999999999999999999999999999999999877 5689999999876431 22345677777
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 455566655444443 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 756 LDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999776 899999999975 5667889998887 58987654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=338.58 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=167.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ +++++|+|+|+++++||.+||+||||||||||+++|+|.++ |.+|+|.+||+++
T Consensus 322 ~i~~~~v~f~y~------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQ------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeC------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 699999999763 12469999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..+++.++||+|++.++ +.|++|| + .. ..++.++++++.+++.+..+..-|......||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLF-DQLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHH-HHhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 54 24667899999988765 4688887 1 01 1234567788888886543321110012469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+++|++|+||||||+||+.+++.+.+.|.+..+ +|+|+|++||++ +..+.+|+++++. +|++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~-~G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR-NGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE-CCEEEEe
Confidence 99999999999999999999999999999999999999986643 589999999987 4577899999997 5899877
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
..
T Consensus 531 ~~ 532 (547)
T PRK10522 531 TG 532 (547)
T ss_pred cC
Confidence 44
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=325.48 Aligned_cols=185 Identities=29% Similarity=0.428 Sum_probs=159.2
Q ss_pred EecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHH
Q 001048 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK 695 (1174)
Q Consensus 617 l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 695 (1174)
|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999987 5699999999986432 23567999999999999999999999986432 22334
Q ss_pred HHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 001048 696 TKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET- 774 (1174)
Q Consensus 696 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 774 (1174)
+..++++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 45567889999999988777765 369999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 775 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 899999999975 6777889998887 599999998754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=340.71 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=167.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++..+ ..++++|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 4699999999764210 012369999999999999999999999999999999999887 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc-ccCCCCCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL-VGLPGVNGLS 727 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~LS 727 (1174)
+.. ..+++.++||+|++.++ +.|+++|+. + ...++.++++++.+++.+..+.. -|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLF-DDLIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhh-hhhhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 34567899999987765 468888841 1 12234567788888887543322 1221124699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .++.+|+|+|++||+++ ..+.+|+++++. +|+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~-~G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLA-AGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999998664 45556899999999874 567899999997 58987
Q ss_pred EE
Q 001048 807 YF 808 (1174)
Q Consensus 807 ~~ 808 (1174)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=292.06 Aligned_cols=152 Identities=28% Similarity=0.411 Sum_probs=134.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|. +.++|++|++.+ +..|++|
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~~q~~~~-~~~tv~~ 82 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--------EDLLFLPQRPYL-PLGTLRE 82 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC--------ceEEEECCCCcc-ccccHHH
Confidence 469999999999999999999999999999999999877 56899999873 568999999765 4679999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+. . ...||||||||++|||||+.+|++++|||||+|||+
T Consensus 83 nl~~~---------------------------------~-----~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP---------------------------------W-----DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc---------------------------------C-----CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98652 0 136999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.++..+.+.|+++ ++|+|++||+++ ....+|+++++.++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999876 689999999974 4578999999987763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=290.09 Aligned_cols=157 Identities=25% Similarity=0.420 Sum_probs=136.5
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 5677777542 3479999999999999999999999999999999999887 568999999987643
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 2 13456788887 99999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999877999999999864 4667788888886 588875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=303.37 Aligned_cols=179 Identities=25% Similarity=0.390 Sum_probs=140.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.++ ..|++|
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 369999999999999999999999999999999999877 5689999998 489999998876 579999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
|+.+... .... ...+.++.+++.+ ..++....+ ...||||||||++|||+|+.+|++++|||
T Consensus 85 nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 85 NILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGEK-GINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred HhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987421 1111 1222333333321 112223222 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 752 PTSGLDARAAATVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||+|||+.+++.+.+ +++++.++|+|||++||+++ .+. .+|+++++.+ |+
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G~ 204 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-GR 204 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-CC
Confidence 999999999999998 56666666899999999975 344 4888888864 53
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=348.63 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=183.0
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCCCH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+.|++||+.+++|+|||||||++|+|.|..+ +++|++.++|.++... +.++.+||+||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 9999999999999999999999999999999999887 6799999999887531 256789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
||++.+.++++ +....+.++.++++++.++|.+.+|+.++ .+|||+|||+++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999887 44555667779999999999999999875 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhh
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFE 823 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~ 823 (1174)
||.+++.+++.+++++++|+.+|+|||-.+ +....|||+.++. .|++...|+++ ++...|.
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv-~G~l~ciGs~q----~LKsrfG 790 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMV-IGQLRCIGSPQ----ELKSRYG 790 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheee-cCeeEEecChH----HHHhhcC
Confidence 999999999999999988889999999654 4555678888877 59999999984 4554443
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=306.88 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=158.8
Q ss_pred cccccceeEEe-----CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 600 QLLSDITGTFR-----PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 600 ~iL~~vs~~i~-----~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
+.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCC
Confidence 36777777776 799999999999999999999999877 56899999884 479999998777889
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
||+|++.+...... . ..+..+++++.+++.+..++.++ .|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999976432110 0 12235678889999877776653 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE--EEcCCCccchhhhhhhhhC
Q 001048 755 GLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII--YFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v--~~G~~~~~~~~~~~~f~~~ 825 (1174)
+||+.++..+.+.|++++++ |+|||++||+++ .+...+|+++++. ++..+ ..+++......+..|++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEc-CCCeeEEEeCCchHHHHHHHHHHHHC
Confidence 99999999999999999764 899999999874 4556788888884 33222 3344433334556666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=293.69 Aligned_cols=153 Identities=33% Similarity=0.543 Sum_probs=134.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 69999999999999999999999999999999999877 468999999987642 234567899999987665 699
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
.||+ ||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8886 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|+.++..+.+.|+++.+ ++|+|++||+++ .+ +.+|+++++.+ |+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~~~~l~~-g~ 171 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TI-RDADRIIVLDD-GR 171 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-HhCCEEEEEcC-CC
Confidence 99999999999999864 799999999975 44 44888888864 53
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=278.96 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=181.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC-ee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-YP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 651 (1174)
.++.+|++.+. ++..+|+|+||++.+||+-+|+|||||||||+|++|+|... |..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46677777643 34689999999999999999999999999999999999877 5689999999 56
Q ss_pred CCcc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLST-----QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . .+.-||--+|.|..|+++||+|||..+.....+- .....+.+++++++++..||.+.+|...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 5432 2 2345788999999999999999999875322110 01123445689999999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.||.||||++.|+.-++++|++|+||||++|+-.....+.-++|+.++. +++|+++.||.. -+.+.++++.+|. .
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh-~ 221 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLH-E 221 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEe-c
Confidence 4999999999999999999999999999999999999999999999986 689999999875 4566778888887 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|.+...|+.++
T Consensus 222 G~VL~EGsld~ 232 (249)
T COG4674 222 GSVLAEGSLDE 232 (249)
T ss_pred cceeecccHHH
Confidence 99999999764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=302.75 Aligned_cols=188 Identities=28% Similarity=0.370 Sum_probs=147.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~~ 671 (1174)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.... ..++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 579999999999999999999999999999999999876 4689999999875321 1345689999998776
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcc-------cccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK-------DSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
..|++||+.+... ... +..+++++.+++.+.. ++..+.+ +..|||||||||+|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGER-GINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccC-CCcCCHHHHHHHHHHHHHhhCC
Confidence 6799999987421 111 1123445555553321 1222222 3579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 745 SIIFMDEPTSGLDARAAATVMR--AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
++|||||||+|||+.++..+++ .++.++++|+|+|++||+++ .+ ..+|+++++. +|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMK-DG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEec-CC
Confidence 9999999999999999999998 66666666899999999975 34 5688888775 45
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=343.24 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.+||+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 48899998865310 112469999999999999999999999999999999999987 5689999999986
Q ss_pred Ccc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQH---T----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~---~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
... . .++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+++.+..|+..+ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----Q 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----c
Confidence 532 1 1457899999999999999999999865322 22334556678899999999887777653 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 456789888887 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999864
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=308.13 Aligned_cols=199 Identities=21% Similarity=0.373 Sum_probs=155.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..++++|+++. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 37 ~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-
Confidence 446899999872 2469999999999999999999999999999999999887 5689999988
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCC
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGV 723 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~ 723 (1174)
.++|++|++.+++ .||+||+.++... ... .+.+.++.+++.+ ..++.++. ..
T Consensus 99 ---------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~ 157 (282)
T cd03291 99 ---------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GG 157 (282)
T ss_pred ---------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC-CC
Confidence 2799999987766 5999999874211 111 1122333333322 12233332 23
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||+++ . ...+|+++++. +
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~-~ 233 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH-E 233 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999865 5554 4799999999975 3 46788888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 234 G~i~~~g~~~ 243 (282)
T cd03291 234 GSSYFYGTFS 243 (282)
T ss_pred CEEEEECCHH
Confidence 8999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=292.39 Aligned_cols=202 Identities=27% Similarity=0.413 Sum_probs=173.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-Q~~~~~~~lT 675 (1174)
..+++|+||+|++|++++++|||||||||+||+|+|... |.+|.|.++|.+.-. ..+-+.+++|+ |.-.+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 468999999999999999999999999999999999887 579999999986432 23445667766 5455666667
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.|.+.....++ +++.++-+++.+.+.+.+++++..+..+ |.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877655444 5666777888999999999998877765 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 756 LDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||..++..|.+.|++..+ .+.||+.+||+.+ ++...||++++++ .|+++|.|+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~-~Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID-QGQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEee-CCcEeecccHH
Confidence 999999999999999875 4899999999997 8999999999887 59999999974
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=294.56 Aligned_cols=190 Identities=27% Similarity=0.405 Sum_probs=156.7
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
-++.+|++.++..... +... ...+++||||+|++||+++|+|+||||||||-|+|.|+.+ |++|+|.++|++
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 4778888876655432 1111 2589999999999999999999999999999999999988 679999999987
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
+.... ..++.+++.++++.+|+.. ..++ + +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r---y--PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYR---Y--PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc---C--CcccCchh
Confidence 54321 2345677899999999764 2333 2 46899999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||.+ -+...+|++.+|. .|++|+.|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy-~G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMY-LGKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEe-cCceeEec
Confidence 99999999999999999999999999999999999999999865 999999999975 4555667777776 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 193 ~~~~ 196 (268)
T COG4608 193 PTEE 196 (268)
T ss_pred CHHH
Confidence 9753
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=296.43 Aligned_cols=188 Identities=21% Similarity=0.212 Sum_probs=150.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-ECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-IGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|. ++|... .+.|++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHH
Confidence 37899999999999999999999999999999999876 5689997 776532 1224566788999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+..... ....++. .+.+.+.+++.+..++.++ .||||||||++|||||+.+|++++|||||+++|+
T Consensus 69 nl~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 999876543 1222222 2334455677776676654 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.++..+.+.+.+..+ ++|+|++||+++ .+.+.+|+++++. +|++++.|+.++
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 189 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLAQ 189 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHHH
Confidence 999999998865443 578999999975 5666789888886 599999999753
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=294.34 Aligned_cols=226 Identities=21% Similarity=0.282 Sum_probs=185.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
-++.+|++...... .+...++++|||++++||.+||+|.||||||-..+.+.|+.+.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36777777655432 23578999999999999999999999999999999999976531 2479999999
Q ss_pred eeCCc---ccc---c-ceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC
Q 001048 650 YPKVQ---HTF---A-RISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~---~~~---~-~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 720 (1174)
+++-. ... | ..|++++|+| .+.|-.|+...+.-..+++ ...++++.++++.++++.+|+.+....+-.+
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 98532 112 2 3689999997 4667789988887765543 4567778888999999999999887776665
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEE
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
| ++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |..++++|||+. -+.+.+|++.+|
T Consensus 155 P--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 P--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred C--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 5 589999999999999999999999999999999999999999999999765 999999999975 355566778777
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. .|++++.|+.++
T Consensus 232 ~-~G~ivE~~~t~~ 244 (534)
T COG4172 232 Q-HGEIVETGTTET 244 (534)
T ss_pred e-ccEEeecCcHHH
Confidence 6 599999999754
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=274.54 Aligned_cols=205 Identities=24% Similarity=0.383 Sum_probs=164.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC--CCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI--HSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~Q~~~--~~~ 672 (1174)
++++|+++|++|.+|+++.|+|.||||||||+|+|+|... +++|+|.++|.+++... +...++-|+|+|. ..+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 5789999999999999999999999999999999999887 67999999999987543 2334677999964 579
Q ss_pred CCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDS---KTKAEFVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
.+|+.||+..+..-........ ..+.+...+-++.+ ||++..++.+|. |||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEE
Confidence 9999999998753211111211 22233333444444 567778888773 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
+|||-|++|||.++..|++.=.++.++ +.|.+++||... +..++-+|.|++. +|+||.+-.-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~g 233 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVTG 233 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEccc
Confidence 999999999999999999999998754 789999999875 5566667777775 6999986543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=334.38 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||+|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQF-------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEe-------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 5778888754 23579999999999999999999999999999999999877 45899999873
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHh-hc-----------cCC-C----------------CCHHHHHHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAW-LR-----------LST-Q----------------IDSKTKAEFVNEV 704 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~-----------~~~-~----------------~~~~~~~~~~~~~ 704 (1174)
+.++|++|++.+++.+||+||+.++.. .+ .+. . ....+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999888899999999987531 00 000 0 0001223567889
Q ss_pred HHHcCCCCcc-cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 001048 705 LQTIELDGIK-DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783 (1174)
Q Consensus 705 l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 783 (1174)
++.+|+.+.. +..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 3333 36999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHHhcceeEEecCcEE-EEEcCCC
Q 001048 784 QPSIDIFEAFDDLVLMKNGGRI-IYFGPLG 812 (1174)
Q Consensus 784 ~~~~~~~~~~d~~~~l~~~G~~-v~~G~~~ 812 (1174)
+++ .+.+.+|+++++. +|++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~-~g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLD-YGELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEe-CCEEEEecCCHH
Confidence 975 5667789988887 5898 4788764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=331.87 Aligned_cols=207 Identities=25% Similarity=0.342 Sum_probs=166.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 588999988541 13579999999999999999999999999999999999877 46899998752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHh-hc------------cCCCCC--------------------HHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAW-LR------------LSTQID--------------------SKTKAE 699 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~~~ 699 (1174)
..+|||+|++.+++.+||.||+.++.. .+ ...... ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999988899999999987531 00 000000 001234
Q ss_pred HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 001048 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779 (1174)
Q Consensus 700 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 779 (1174)
+++++++.+|+.. .++.++ +|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6778899999854 555543 69999999999999999999999999999999999999999999986 25999
Q ss_pred EEecCCCHHHHHHhcceeEEecCcEEE-EEcCCC
Q 001048 780 CTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPLG 812 (1174)
Q Consensus 780 ~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~~ 812 (1174)
++||+++ .+.+.+|+++++. +|+++ +.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~-~g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELD-RGRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEe-CCEEEEecCCHH
Confidence 9999975 5667788888887 58876 778753
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=257.99 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=163.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~l 674 (1174)
++...|-++|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|+++++. ...+|++|..+||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 3568999999999999999999999999999999999976543 468999999998764 24567899999999999999
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
+|.+|+.|+. +.......+++.++..++..||.+..+.- +.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999864 34445556777889999999999887664 24699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 755 GLDARAAATVMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
.||..-+.+..+.+-. +...|..+|.+|||.. ++ . -|+++++.+--
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~-Dv-p---------agsrVie~~~~ 210 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ-DV-P---------AGSRVIEMAQW 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc-cC-C---------CCCeeeeeehh
Confidence 9999999999987654 4456999999999853 21 1 26777776543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=362.50 Aligned_cols=204 Identities=27% Similarity=0.366 Sum_probs=165.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE------
Confidence 58999999976421 13579999999999999999999999999999999999887 4566552
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~ 725 (1174)
..++.++||+|++.++ +.||+|||.|+.. .+ +++.+++++..+ +++..+|.+|+.|. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIF-NATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCccccc-cccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 2456789999998876 5799999998731 12 223444555444 34566899998876 5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++||||+.++|+|++||||||+||+.+++++.+. ++.. .+|+|+|++||+++ ....+|+++++. +|+
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G~ 816 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EGM 816 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CCE
Confidence 999999999999999999999999999999999999988765 5544 35899999999974 567899999997 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|+.++
T Consensus 817 i~~~Gt~~e 825 (1495)
T PLN03232 817 IKEEGTFAE 825 (1495)
T ss_pred EEEecCHHH
Confidence 999999754
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=297.18 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=156.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc--c-cc--ceEEE
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH--T-FA--RISGY 663 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 663 (1174)
.+|+|+| .+++||+++|+||||||||||||+|+|..+ +.+|+|. ++|++.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 6999999 599999999999999999999999999987 5699996 778765321 1 11 23689
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 664 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
++|+...++ .++.+++.+.. . .....+.+.++++.+++.+..+..+ ..||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 1223456788999999987666654 36999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 744 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999974 4555788888873 667765543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=329.46 Aligned_cols=207 Identities=24% Similarity=0.336 Sum_probs=163.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++++|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 478899988541 13579999999999999999999999999999999999877 46899998751
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhh-c------------cCCCCCHH--------------------HHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWL-R------------LSTQIDSK--------------------TKAE 699 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~-~------------~~~~~~~~--------------------~~~~ 699 (1174)
..+|||+|++.+++++||+||+.++... + ........ ...+
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999888999999999875321 0 00000000 0123
Q ss_pred HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 001048 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779 (1174)
Q Consensus 700 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 779 (1174)
+++++++.+++.. .++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777753 45544 369999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHHhcceeEEecCcEEE-EEcCCC
Q 001048 780 CTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPLG 812 (1174)
Q Consensus 780 ~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~~ 812 (1174)
++||+++ .+...+|+++++. +|+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~-~g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELD-RGRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEE-CCEEEEecCCHH
Confidence 9999975 5666788888887 58875 678764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=357.64 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=167.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE-EEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE-GDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~ 651 (1174)
.++++|++|.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE----
Confidence 58999999976421 13579999999999999999999999999999999999887 568 89875
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 724 (1174)
++.++||+|++.++ +.||+|||.|+.. .+ +++.+++++..+| ++..+|.+|+.|.
T Consensus 678 ------~~~Iayv~Q~p~Lf-ngTIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~- 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIF-NATVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV- 739 (1622)
T ss_pred ------cCeEEEEcCccccC-CCCHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCC-
Confidence 34689999998875 5799999998732 11 2345555555544 4456899998775
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+||||+.++|+|++||||||+||+.+++++.+ .++.+. +|+|+|++||++ +....+|++++|. +|
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~-~G 815 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVH-EG 815 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEe-CC
Confidence 599999999999999999999999999999999999998865 566553 589999999987 4578899999987 59
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
++++.|+.++.
T Consensus 816 ~i~e~Gt~~eL 826 (1622)
T PLN03130 816 MIKEEGTYEEL 826 (1622)
T ss_pred EEEEeCCHHHH
Confidence 99999997653
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=273.00 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=127.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+++|+|+||++++||+++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 368899987632 112234678776
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcC--CcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~--p~illlDEPts 754 (1174)
.++++.+++... .+... +.||||||||++|||+|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666777642 44443 46999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|||+.++..+.+.|++++++|+|||++||+++ ..+.+|+++++.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999777999999999975 3567898888853
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=274.31 Aligned_cols=156 Identities=22% Similarity=0.321 Sum_probs=130.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++++ +++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 45788885 8999999999999999999999999999887 568999999853 688887532
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHHhcceeEEecCcEEEEE--cCCCccchhhhhhhh
Q 001048 758 ARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF--GPLGQHSCKVIEYFE 823 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~--G~~~~~~~~~~~~f~ 823 (1174)
+.++..+.+.++++++++ +|+|++||+++ .+.+.+|+++++.+ +-.++. |++....+.+..|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 999999999999987764 99999999874 45567888888865 444444 666544444555654
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=294.30 Aligned_cols=202 Identities=20% Similarity=0.260 Sum_probs=155.2
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..+.+.|++|.+ ..+ ..++++++|-|.+++.+|++||||+|||||||++.|... |..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y-----------~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGY-----------SDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCC-----------CCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 3468889998843 222 279999999999999999999999999999999999887 56787754322
Q ss_pred eCCcccccceEEEEccC--CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCC
Q 001048 651 PKVQHTFARISGYCEQN--DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 727 (1174)
. .+++-.|+ +.+.-+.++-|++.=.. ....+.+.+..++..+||.+ ..+.++ ++||
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS 511 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLS 511 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhcc
Confidence 1 12333343 33444667777765321 11234566888999999984 444444 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
+|||+||..|+.+++.|.+|+|||||+|||..+...+.+.|.+. .-+||+++||.. -+-+.++++.+..+++...+
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999999999999999999875 458999999975 46677888988888777777
Q ss_pred EcCC
Q 001048 808 FGPL 811 (1174)
Q Consensus 808 ~G~~ 811 (1174)
.|..
T Consensus 588 ~G~i 591 (614)
T KOG0927|consen 588 DGDI 591 (614)
T ss_pred CccH
Confidence 7763
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=330.02 Aligned_cols=199 Identities=18% Similarity=0.284 Sum_probs=158.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC---
Confidence 589999998542 13479999999999999999999999999999999999876 4579998764
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc------cccCCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS------LVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~~~~~~~~~L 726 (1174)
++.++||+|++.+++. |++||+.++........ ....++.++++++.+++.+..++ ..+. ...|
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~L 583 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVL 583 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCC
Confidence 3568999999987765 99999987532210000 00113456788888888765443 2222 2469
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||||||++|||||+++|++++|||||||||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|+++++..+|
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998876 3899999999975 467899999886443
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=267.93 Aligned_cols=227 Identities=23% Similarity=0.323 Sum_probs=187.2
Q ss_pred EEEEeceEEEEeeCCc----ccc------cc-cccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE
Q 001048 573 TVTFEDLRYYVDIPSA----MRK------NG-FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII 641 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~----~~~------~~-~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~ 641 (1174)
.+.++||+..+..+.. .+. .+ .......+|+||||++++||.+||+|+||||||||||+|+|.++ |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 4667777766555431 100 01 13345789999999999999999999999999999999999988 67
Q ss_pred EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 642 EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 642 ~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
+|+|.++|+-...... .-.+.|.+|.+||+.+-+.+. +...++.+++++++++..+|.+..|.++.
T Consensus 81 ~G~v~v~G~v~~li~l---------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-- 146 (249)
T COG1134 81 SGKVKVTGKVAPLIEL---------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-- 146 (249)
T ss_pred CceEEEcceEehhhhc---------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh--
Confidence 9999999974211111 123457899999999977654 45678888999999999999999998874
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
.+|.||+-|++.|.|...+|+||++||-.+--|+.=+++-.+.++++.++++|+|+++|+++ .+.+.||+.+++.
T Consensus 147 ---tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~- 221 (249)
T COG1134 147 ---TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE- 221 (249)
T ss_pred ---hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe-
Confidence 69999999999999999999999999999999999999999999999888899999999986 6888899999987
Q ss_pred CcEEEEEcCCCccchhhhhhhhh
Q 001048 802 GGRIIYFGPLGQHSCKVIEYFEC 824 (1174)
Q Consensus 802 ~G~~v~~G~~~~~~~~~~~~f~~ 824 (1174)
+|++.+.|.++ ++.++|+.
T Consensus 222 ~G~i~~~G~~~----~vi~~Y~~ 240 (249)
T COG1134 222 HGQIRMEGSPE----EVIPAYEE 240 (249)
T ss_pred CCEEEEcCCHH----HHHHHHHH
Confidence 59999999984 56666654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=262.95 Aligned_cols=132 Identities=33% Similarity=0.490 Sum_probs=119.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~~~------------ 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--------VKIGYFEQ------------ 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe--------EEEEEEcc------------
Confidence 469999999999999999999999999999999999887 56999999984 36799998
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
||+|||||++|||+|+.+|++++|||||+|||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.++..+.+.|+++ ++|+|++||+++ ++.+.+|+++++.+ |+
T Consensus 104 ~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 104 ESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred HHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999886 479999999975 55567788888864 54
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=257.89 Aligned_cols=178 Identities=27% Similarity=0.365 Sum_probs=155.5
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccceEEEEccCCCCCCC
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~Q~~~~~~~ 673 (1174)
.+++.++.++||++.+||.+-|.|||||||||||++|+|+.. |.+|+|.++|.++... .+++.+-|+--++.+-+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 346789999999999999999999999999999999999987 5699999999876542 244556777777888899
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|+.|||.|-..+... ...+.+.++++.+||.+..|.+++ .||-||||||+|||-+++.+++-|||||+
T Consensus 90 LTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765432 113457789999999999999986 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++||......+-.++..-+.+|-.||.+||||.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999999999988888999999999985
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=248.18 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=172.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCC--CCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDI--HSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~--~~~ 672 (1174)
...+++.|||++++|+.+||+|.||||||||.|+|+|..+ |++|+|++||++..-. .+.+.|-.++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 4578999999999999999999999999999999999988 6799999999987432 23467899999974 456
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
.+.+.+-+... +++..+.+...+.+++.+.++.+||- +.++.. ++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66666666554 45566777888899999999999985 334433 34699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
...+||...+.++.++..++.++ |.+-|.++.+.. -+....|+++++. +|++|+.|.+.+
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~-EG~vvE~G~t~~ 236 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMH-EGEVVERGSTAD 236 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEe-cCceeecCChhh
Confidence 99999999999999999999865 999999999875 4667778888886 599999999743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=344.60 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=164.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ ..++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~-----------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWA-----------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcC-----------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---
Confidence 589999998653 123479999999999999999999999999999999999887 5689999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH---HHHHcCC-CCcccccccCCCCCCCCH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE---VLQTIEL-DGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l-~~~~~~~~~~~~~~~LSg 728 (1174)
.++||+|++.++ +.||+||+.|+.. .+.+ +.+.+.+ +.+.++. .+..+|.+|+.+. +|||
T Consensus 700 -------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~-~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~-~LSG 763 (1522)
T TIGR00957 700 -------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGV-NLSG 763 (1522)
T ss_pred -------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHH-HHHHHHHHhCCHHHHHhcCCCCCceecCCCC-CCCH
Confidence 379999998764 6899999998632 1121 1111111 1222222 3345778887654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV--ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||++||||++++|++++||||||+||+.+++.+.+.+.+.. .+|+|+|++||+++ ....+|+++++. +|+++
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~G~i~ 840 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-GGKIS 840 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-CCeEE
Confidence 99999999999999999999999999999999999999997532 35899999999975 456689988886 69999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|+.++
T Consensus 841 ~~g~~~~ 847 (1522)
T TIGR00957 841 EMGSYQE 847 (1522)
T ss_pred eeCCHHH
Confidence 9999754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-30 Score=245.37 Aligned_cols=201 Identities=26% Similarity=0.395 Sum_probs=149.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCC-----cccc----cceEEEEc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKV-----QHTF----ARISGYCE 665 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~-----~~~~----~~~~~~v~ 665 (1174)
...-.+||||++.|||+++|+|+|||||||||+||+++.. |..|+|.+.-. +.+ +... +..-|+|.
T Consensus 18 ~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 3467899999999999999999999999999999999988 56899988542 221 1111 22359999
Q ss_pred cCCCCCCCC------CHHHHHH-HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHH
Q 001048 666 QNDIHSPNI------TVEESIV-FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738 (1174)
Q Consensus 666 Q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~ 738 (1174)
|+|.---.+ .|-|-+. .+++- --..++.+.+.++.++++. +++-.. ++..|||+|||+.|||
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~--~RiDD~--PrtFSGGMqQRLQiAR 164 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDL--DRIDDL--PRTFSGGMQQRLQIAR 164 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCc--ccccCc--ccccchHHHHHHHHHH
Confidence 997532222 3333332 11111 1123445667888887753 222222 4679999999999999
Q ss_pred HhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 739 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
-|++.|++.|+||||.|||...+..++++++.+..+ |.+++++|||+ .+.....+.++++++|++++.|-+++
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl--~VarLla~rlmvmk~g~vve~GLTDr 238 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL--AVARLLADRLMVMKQGQVVESGLTDR 238 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh--HHHHHhhhcceeecCCCEeccccccc
Confidence 999999999999999999999999999999999866 99999999986 45655544444445799999998754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=312.79 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=155.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||+|++||++||+||||||||||||+|+|..+ |.+|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--
Confidence 5678888754 34679999999999999999999999999999999999876 568999998742
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHh-----------------------hcc-CCCCCHHHHHHHHHHHHHHcC
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAW-----------------------LRL-STQIDSKTKAEFVNEVLQTIE 709 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~l~~l~ 709 (1174)
.++|++|++... ..|+.+.+.-... +.. .......+..++++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 3465554431100 000 000001123456888999999
Q ss_pred CC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 001048 710 LD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID 788 (1174)
Q Consensus 710 l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 788 (1174)
+. +..+..++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+|||+.. .
T Consensus 138 l~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 45666654 69999999999999999999999999999999999999999998875 579999999975 5
Q ss_pred HHHHhcceeEEecCcEEE-EEcCC
Q 001048 789 IFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 789 ~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
+...+|+++++. +|+++ |.|+.
T Consensus 209 l~~~~d~i~~L~-~G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIE-QQSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEe-CCEEEEecCCH
Confidence 666788888886 58886 56654
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=256.73 Aligned_cols=141 Identities=33% Similarity=0.573 Sum_probs=125.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 469999999999999999999999999999999999877 468999999987543 123456788888
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
||||||||++|||+++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||..++..+.+.++++.++++|++++||+++ .+...+|+++.+.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999998776899999999975 45555688888864
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=309.58 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=154.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ +.+|+|.++|..
T Consensus 3 ~l~i~~ls~~~-------------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSF-------------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEe-------------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC-
Confidence 37788888754 23579999999999999999999999999999999999876 568999998631
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHH------------------------------hhcc-CCCCCHHHHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSA------------------------------WLRL-STQIDSKTKAEFV 701 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~~ 701 (1174)
.++|++|++......+|.+++..+. .+.. .......+..+++
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2467777543333356665542110 0000 0000011224567
Q ss_pred HHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 001048 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781 (1174)
Q Consensus 702 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 781 (1174)
+++++.+|+.. ++.+ ..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|
T Consensus 140 ~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 5544 369999999999999999999999999999999999999999999987 3599999
Q ss_pred ecCCCHHHHHHhcceeEEecCcEEE-EEcCC
Q 001048 782 IHQPSIDIFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 782 ~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
||++. .+.+.+|+++.+. +|+++ +.|+.
T Consensus 210 sHd~~-~l~~~~d~i~~L~-~G~i~~~~g~~ 238 (635)
T PRK11147 210 SHDRS-FIRNMATRIVDLD-RGKLVSYPGNY 238 (635)
T ss_pred eCCHH-HHHHhcCeEEEEE-CCEEEEecCCH
Confidence 99975 4666788888886 58887 45664
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=307.68 Aligned_cols=180 Identities=26% Similarity=0.276 Sum_probs=148.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc-----cccceEE
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH-----TFARISG 662 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 662 (1174)
..+|++++ .+++||+++|+||||||||||+|+|+|..+ |.+|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 46999999 999999999999999999999999999877 4589997 889875321 1112345
Q ss_pred EEccCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 663 YCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 663 ~v~Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
+.+|.....+ ..||+|++... +..++++++++.++|.+..|+.++ +|||||||||+||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 5555433333 34999998631 123467889999999888888765 699999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 740 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++.
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~ 285 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAY 285 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 9999999999999999999999999999999988 999999999975 5667788888775
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=335.21 Aligned_cols=190 Identities=21% Similarity=0.388 Sum_probs=153.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+++|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 579999999999999999999999999999999999887 5689999987 3799999998876 59999
Q ss_pred HHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
||.|+... +.....+ ..++.++. +.+..+|.+|+.+. .|||||||||+||||++.+|++++|||||
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~~g~-~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIAL--FPEKDKTVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHh--ccccccccccCcCC-CcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99987421 1111111 11222222 22334677887654 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
||||+.++..+.+. ++++. +|+|+|++||+++ ....+|+++++. +|++++.|+.++.
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~l 634 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSEL 634 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHHH
Confidence 99999999999985 66664 4899999999975 356689888887 5999999997543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=312.68 Aligned_cols=206 Identities=24% Similarity=0.393 Sum_probs=171.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|.+++-+.. ...+.|+||||+|++|+++||+||-|||||+||.+|.|..+ ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 357888888864321 12358999999999999999999999999999999999887 57999999885
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~ 724 (1174)
++||+|++.++ +.||||||.|+... .+++.+++++.+.|. +...|.+|+.|.
T Consensus 584 ---------iaYv~Q~pWI~-ngTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQ-NGTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhh-CCcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 69999999874 67999999998532 134455666665553 456788999887
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||+++|||+-+|.+|++||.|.|++|+.+.+++.+..-+-.-++||+|++|||. +....+|.+++|. +|+
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~-~G~ 719 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLK-DGK 719 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEec-CCe
Confidence 5999999999999999999999999999999999999998875554334589999999985 6788899999986 599
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
+.+.|+.++.
T Consensus 720 I~~~Gty~el 729 (1381)
T KOG0054|consen 720 IVESGTYEEL 729 (1381)
T ss_pred EecccCHHHH
Confidence 9999998654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=327.49 Aligned_cols=192 Identities=28% Similarity=0.378 Sum_probs=149.3
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++|++|++.++ +.||
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 34679999999999999999999999999999999999887 568999763 4589999998775 6799
Q ss_pred HHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+||+.|+... +.+... ...++.++.+ .+..++.+|..+ ..|||||||||+|||||+.+|++++|||
T Consensus 738 ~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 738 RGNILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999985211 111101 1122233333 122345666554 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+||+.++..+++.+.....+|+|+|++||+++ ..+.+|++++|. +|++++.|+.++
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999988754322235899999999874 457789998887 599999999754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=287.02 Aligned_cols=204 Identities=26% Similarity=0.359 Sum_probs=158.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|++..+ +.+++++|+|+++.+|+.+||+|+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--
Confidence 46777887753 35789999999999999999999999999999999999887 56899987532
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc-------------cCCC--------------CCHHHHHHHHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR-------------LSTQ--------------IDSKTKAEFVNEVL 705 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 705 (1174)
-.++|++|++...+..||.+.+.-+..-. .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25799999999988899999887653100 0000 00011234667788
Q ss_pred HHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 706 ~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
..+|+.+. ++.++ +||||||.||++|++|+.+|++|+|||||++||..+..-+.+.|++. +| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 67665 69999999999999999999999999999999999999999999864 46 999999983
Q ss_pred CHHHHHHhcceeEEecCcEE-EEEcC
Q 001048 786 SIDIFEAFDDLVLMKNGGRI-IYFGP 810 (1174)
Q Consensus 786 ~~~~~~~~d~~~~l~~~G~~-v~~G~ 810 (1174)
.-+-+.+++++-+.. |++ .|.|.
T Consensus 211 -~FLd~V~t~I~~ld~-g~l~~y~Gn 234 (530)
T COG0488 211 -YFLDNVATHILELDR-GKLTPYKGN 234 (530)
T ss_pred -HHHHHHhhheEEecC-CceeEecCC
Confidence 234455666666654 555 45554
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=259.23 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=131.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHH-HHHhC--CCC--C--CeEEEEEEECCe-eCCccccc-ceEEEEccCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM-DVLSG--RKT--G--GIIEGDIRIGGY-PKVQHTFA-RISGYCEQND 668 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~Q~~ 668 (1174)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ...++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 46799999999999999999999999999995 44431 000 0 000000 00000 00000111 1233434433
Q ss_pred C--CCCCCCHH---HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 669 I--HSPNITVE---ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 669 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
. ..+..+|. |...+...+. ......++ .+.++.+++.+ ..+... ..||||||||++|||+|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 2222221111 11112223 46788899875 355543 4699999999999999999
Q ss_pred CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEc
Q 001048 743 NP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFG 809 (1174)
Q Consensus 743 ~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G 809 (1174)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ..+.+|+++++. ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--TIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--HHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 599999999999999999999999999877999999999974 357888888882 468999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=257.29 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=131.3
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA 684 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~ 684 (1174)
=.+++..||+++++||||-||||+.++|+|..+ |.+|+ .. .-.++|=||--.--...||++-+.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 346788899999999999999999999999887 44665 11 124677788644446789999876543
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHH
Q 001048 685 WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764 (1174)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i 764 (1174)
..+.. ......++++-+.|++..|..+. +|||||.|||+||.+|.+++++.+||||++-||.+.+..+
T Consensus 427 ~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 32111 11234577888889888888764 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCCCHHHHHHh-cceeEE
Q 001048 765 MRAVKNVVET-GRTVVCTIHQPSIDIFEAF-DDLVLM 799 (1174)
Q Consensus 765 ~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~-d~~~~l 799 (1174)
.+.|++..++ ++|.+++-||.- +..+. |++++.
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~--~~dyvsDr~ivF 529 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIY--MIDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHhhcCceEEEEeccee--hhhhhhceEEEE
Confidence 9999999864 899999999864 34443 444444
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=243.11 Aligned_cols=134 Identities=32% Similarity=0.558 Sum_probs=119.0
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999887 569999999999865 345678999999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
| ...++++++++.+++.+..++.++.+. ..||||||||++||+||+++|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 223457889999999888888886544 5799999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-28 Score=230.89 Aligned_cols=191 Identities=24% Similarity=0.301 Sum_probs=152.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee--CC--c-------ccccceEEEEcc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KV--Q-------HTFARISGYCEQ 666 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~--~~--~-------~~~~~~~~~v~Q 666 (1174)
..++++|+||+++.||++++=||||+|||||||+|-|.+. +.+|+|.+.... ++ . .-.++.+|||.|
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 4589999999999999999999999999999999999876 569999985432 11 1 113456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcE
Q 001048 667 NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 746 (1174)
Q Consensus 667 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~i 746 (1174)
.-...|..+..|-++-...- .+.+.+...+++.+++..+++.+-.=.+ + +...||||||||.|||.++.+-+|
T Consensus 101 FLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L---a-PaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL---A-PATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred HHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC---C-CcccCCchheehhhhhhhhccCce
Confidence 87778887777766554432 2456677778889999999987543222 1 246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEE
Q 001048 747 IFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLM 799 (1174)
Q Consensus 747 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l 799 (1174)
|+|||||+.||..++..++++|++-+.+|..+|=+-|| .++.+. +|+++-+
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD--eevre~vadR~~~~ 225 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD--EEVREAVADRLLDV 225 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc--HHHHHHHhhheeec
Confidence 99999999999999999999999988889999999997 355554 4555544
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=257.48 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=149.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh--------CCCC--C---CeEE------EEEEECCeeCCccc---
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--------GRKT--G---GIIE------GDIRIGGYPKVQHT--- 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~--------g~~~--~---~~~~------G~i~~~g~~~~~~~--- 656 (1174)
..-|+|||.+|+.|++++|.|+||||||||++.+. +... + .... --|.+|..|+....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 46799999999999999999999999999998552 1100 0 0011 23666766643210
Q ss_pred ----------ccc----------------eEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC
Q 001048 657 ----------FAR----------------ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710 (1174)
Q Consensus 657 ----------~~~----------------~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 710 (1174)
.|+ .+.|..++......+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 000 1345555555567899999999876432 12346778999999
Q ss_pred CC-cccccccCCCCCCCCHHHHHHHHHHHHhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 711 DG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 711 ~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.+ ..+... +.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|+|+++|+++
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 344443 46999999999999999996 7999999999999999999999999999888999999999874
Q ss_pred HHHHHHhcceeEEe-----cCcEEEEEcCC
Q 001048 787 IDIFEAFDDLVLMK-----NGGRIIYFGPL 811 (1174)
Q Consensus 787 ~~~~~~~d~~~~l~-----~~G~~v~~G~~ 811 (1174)
..+.+|+++.+. ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 456789888883 57999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-28 Score=299.52 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=146.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC-CCeEEEEEEECCe
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-GGIIEGDIRIGGY 650 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~-~~~~~G~i~~~g~ 650 (1174)
-.+.++|+++.+. ++.+|+|+||+|.+||.+||+|||||||||||++|+|... +.|.+|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3589999998652 3469999999999999999999999999999999999642 1234567765433
Q ss_pred eCCccc-----------------ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC---------------CCCHHHHH
Q 001048 651 PKVQHT-----------------FARISGYCEQNDIHSPNITVEESIVFSAWLRLST---------------QIDSKTKA 698 (1174)
Q Consensus 651 ~~~~~~-----------------~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~---------------~~~~~~~~ 698 (1174)
...... .++.+++++|++.+... ++.++.........+. ..+....+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 210000 01223455554322111 1111110000000000 00011234
Q ss_pred HHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 699 EFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 699 ~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
+++.++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566777788875 3345554 369999999999999999999999999999999999999999999886 689
Q ss_pred EEEEecCCCHHHHHHhcceeEEecCcEEE-EEcCC
Q 001048 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 778 vi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
+|++||+.. .+.+.+|+++++. +|+++ +.|+.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~-~g~i~~~~g~~ 426 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLH-GQKLVTYKGDY 426 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 999999964 4556688888887 58886 66664
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=245.89 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=130.5
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-------CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-------GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+++++++++| +++|+||||||||||+++|+|...+ +...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986431 122356777777654333456799999988665
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh----cCCcEEEEeC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 751 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~----~~p~illlDE 751 (1174)
|+ .. ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 02345666665 34445543 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999874 457899999887654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=221.71 Aligned_cols=197 Identities=25% Similarity=0.435 Sum_probs=165.5
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+-|-.+|+++..||++-++|||||||||||..++|..+. +|+|.++|.+... ....|..+|..|+..-.+.+.|
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 346789999999999999999999999999999998763 7999999998753 2355667899988777778899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc-----CC--cEEEE
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA-----NP--SIIFM 749 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~-----~p--~illl 749 (1174)
...+.+. . +.+++...++++.+.+++.+...+.+ +.|||||=|||-+|-..++ || ++|+|
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8887653 2 23556677888888888876655543 4799999999999987765 45 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|||.++||...+..+-.+|.+++.+|.+||++.||++ ...+.+|++.++.+ |++...|..++.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~eV 219 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREEV 219 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhhh
Confidence 9999999999999999999999999999999999998 57788899999975 899999998663
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=252.96 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=156.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++...+ .++..|++.|+.++|||.+.|.||||||||||+|+|+|+-+.+ +|+|..-
T Consensus 391 ~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--- 453 (604)
T COG4178 391 HGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--- 453 (604)
T ss_pred ceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC---
Confidence 5799999987532 2358999999999999999999999999999999999998855 5776542
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC-CCCCCCCHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL-PGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~LSgGq 730 (1174)
....+-|+||.|.+ |..|.||-|.|.... ... ..+.+.++|.++||.+..++.-+. +-.+.||+||
T Consensus 454 -----~~~~~lflpQ~PY~-p~GtLre~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 454 -----ADSALLFLPQRPYL-PQGTLREALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred -----CCCceEEecCCCCC-CCccHHHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 11236899999876 667999999875321 112 234577889999998887665432 2234699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +....++.+-+.++
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 999999999999999999999999999999999999998743 3899999999864 45555665555443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=227.14 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=145.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
|..+.++||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|... |..|+.+-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--
Confidence 44688889988432 35689999999999999999999999999999999999887 456765432
Q ss_pred eCCcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 651 PKVQHTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.+-.||+..|+. .+-..-|..|.|.-.. ..+. +.+...+-.+||...++|+- ...|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecCC
Confidence 233578888763 3444556666654221 1222 22456788889988888863 357999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||-||++|.--+..|+||||||||++||..+...+.++|++. .-.||+++||-+ -+.+--|.+.++.+.|
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVENQG 778 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEccCC
Confidence 9999999999999999999999999999999999999999876 457899999854 2444445555555443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=229.13 Aligned_cols=198 Identities=21% Similarity=0.265 Sum_probs=145.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..+.+.+|++.++ .++-+++.+++..++.-+-.+++|+||+||||++|++.|... |..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~-----------p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT-----------PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCC-----------CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 44678888876432 222268999999999999999999999999999999999665 4567665543
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHH
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgG 729 (1174)
+.+++|-.|...-+..+.|.+- .+-...+ ++.. ++.+++.+..+||+.- +... ..+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 4568999998665555555443 2322222 2222 3346677888999743 2222 3479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH-HhcceeEEecCcEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~v~ 807 (1174)
||-||++|.....+|.+|+|||||+.||-.+-..+.++|+.. +-.||+|||+. +..+ .|+.+.++ ++|++.-
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~--~fi~~~c~E~Wvv-e~g~vt~ 559 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE--EFISSLCKELWVV-EDGKVTP 559 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH--HHHhhcCceeEEE-cCCcEEe
Confidence 999999999999999999999999999999999999999876 45789999974 4444 45555555 4677753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-25 Score=231.85 Aligned_cols=141 Identities=23% Similarity=0.346 Sum_probs=119.5
Q ss_pred cccchhhhcCC-CCCccHHH----------HHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhH
Q 001048 2 EVIKLEKLAGI-FPDPDVDA----------YMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 2 ~~~~~~~~~~~-~~~~~v~~----------~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
++++.|+..|. ++|+|.+. -++.+..++.|++++|.++|+.+||++.+|..-.+ |||||||||+
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 56788888887 45566652 23334466889999999999999999999987654 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|||||+.+|+||++|||||+|||.+...|.+.|+++.++.|.|+++-.|+ ..-+=+.|||+.||++|+++++|+..+
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999998889998875543 334445599999999999999998754
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=236.31 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=129.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC----------------CCCC----eEEE--EEEECCee----
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------------KTGG----IIEG--DIRIGGYP---- 651 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~----------------~~~~----~~~G--~i~~~g~~---- 651 (1174)
++.++++++ |++++|+||||||||||+++|++. ...+ ..++ +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456888887 789999999999999999999832 1111 0112 44555532
Q ss_pred CC--cccccceEEEEccCCCCCC-CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 652 KV--QHTFARISGYCEQNDIHSP-NITVEESIVFSAWLRLSTQIDS-KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 652 ~~--~~~~~~~~~~v~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ....++.+++++|+..+++ ..|..|...+............ .....++ .+.+++.+..+... +.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccC
Confidence 11 1234566899998877766 4677776665544322211000 0001122 23334443334433 4699
Q ss_pred HHHHHHHHHHHHhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 728 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 728 gGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||||||++|||+|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++ ++.+.+|+++.+.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999973 5899999999999999999999999999865 78999999974 67788999988863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=227.89 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=125.0
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHh----CCCCCCeEEEEEEECCeeCCcccccceEEEEccCC-----CCCCCCC
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLS----GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQND-----IHSPNIT 675 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~-----~~~~~lT 675 (1174)
.++++.+| +++|+||||||||||+++|. |...+ ..|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 44567778 99999999999999999995 76552 3454442222222233445789999987 2234458
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH------HHHHHHhhcCCcEEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR------LTIAVELVANPSIIFM 749 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR------v~ia~al~~~p~illl 749 (1174)
+.||+.+.. . +.+++.+ +.. ++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888875421 1 1122222 222 24699999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 750 DEPTSGLDARAAA-TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 750 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||++||+.++. .+.+.|++++++ |+|+|++||++ +..+.+|+++.+.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEeeCCC
Confidence 9999999999999 999999999876 89999999986 45678999999988774
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-24 Score=214.32 Aligned_cols=139 Identities=24% Similarity=0.378 Sum_probs=116.8
Q ss_pred cccchhhhcCC-------CCCccHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 2 EVIKLEKLAGI-------FPDPDVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 2 ~~~~~~~~~~~-------~~~~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
++.+.|+..|. +||.+|++.+...+ ..+.|-+++..++|+.+||.+.+|..-+. |||||||||
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRV 145 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRV 145 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHH
Confidence 35567777775 77888886655443 44566666778899999999999997654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
+|||||+-+|+|+++|||||+|||....+|.++++++|+ .|.|.||..| -..=.-+-+|||+.|++|++++.|+++
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTH-EM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTH-EMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEec-hhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999999999997 5899888766 333345669999999999999999764
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=236.98 Aligned_cols=179 Identities=17% Similarity=0.252 Sum_probs=132.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe-eCCc-----ccccceEEEEccCC---------CCCCCCCH
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY-PKVQ-----HTFARISGYCEQND---------IHSPNITV 676 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~~~-----~~~~~~~~~v~Q~~---------~~~~~lTv 676 (1174)
..+++|+||||||||||+++|++...+ ...|++...|. ++.. ......+++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 459999999999999999999997642 12467777665 3211 11234688999984 34567899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--------------------cccccccCCCCCCCCHHHHHHHHH
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--------------------IKDSLVGLPGVNGLSTEQRKRLTI 736 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~~~~~~~~~LSgGqrqRv~i 736 (1174)
.+++..+...+.... .+....+.+.+.++.+++.. ..+.. +..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-----~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-----LTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-----ccccCHHHHHHHHH
Confidence 988865432211000 12233467888999999851 11222 34799999999999
Q ss_pred HHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 737 AVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 737 a~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 489999999984 6788899887775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-25 Score=237.60 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=132.6
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|+..+.+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 35678999987 8999999999999999999961 2232211 1112457888998888888899
Q ss_pred HHHHHHHHhhccC-----CCCCHHHHHH--HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc----CCc
Q 001048 677 EESIVFSAWLRLS-----TQIDSKTKAE--FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA----NPS 745 (1174)
Q Consensus 677 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~----~p~ 745 (1174)
+|++.+....... .+...+.... ..+++++.+++.+..++.++ .||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877665432100 0111111000 12455667777776676653 699999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+++|||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.+.+|+++++...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999984 678899999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-24 Score=230.18 Aligned_cols=206 Identities=22% Similarity=0.278 Sum_probs=158.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
+++++|++|.+.. ..-=+..||++|++||++-|+|.|||||||++++|.|+.. |.+|+|++||+|+
T Consensus 322 ~lelrnvrfay~~------------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQD------------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCc------------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccC
Confidence 5899999986532 1134788999999999999999999999999999999988 5699999999998
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ++|+..+-|+-|-.+|+.+- .+... ...+.++..++.+.+.+...-.-|+-....||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG 452 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccc
Confidence 653 45565666666555544321 11111 1234566777777776654333333233469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||+++-.||+-+.+|+++||=.+--||.-++.+.+.+- .++++|+||+.+|||- .-+..+|+.+.+. +|++++.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~-~G~~~e~ 529 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMR-NGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHh-cCceeec
Confidence 9999999999999999999999999999999999887554 5677899999999984 4588889988886 5999986
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
-+
T Consensus 530 tg 531 (546)
T COG4615 530 TG 531 (546)
T ss_pred cc
Confidence 54
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=223.54 Aligned_cols=180 Identities=22% Similarity=0.132 Sum_probs=116.9
Q ss_pred ccceeEEe-CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC--eeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 603 SDITGTFR-PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG--YPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 603 ~~vs~~i~-~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
++++|... +|++++|+||||||||||+++|++...+ +..+....+. ..+........+++++|++.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666543 5899999999999999999999964321 2223333221 01111233456888998763311 22111
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc----------CCcEEEE
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA----------NPSIIFM 749 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~----------~p~illl 749 (1174)
. ..+.++..+.+ .++..++.+..+..+ ..||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222111111 123333434344433 4699999999999999985 6789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||||+|||+.++..+.+.|++++++|+|+|++||+++ .+...+|+++++.++|
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999874 3444455666655443
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=230.01 Aligned_cols=127 Identities=27% Similarity=0.432 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC---cEEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFM 749 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p---~illl 749 (1174)
.|||.|...|.... .+..+.-+.|..+||.-. ..|.|. ..|||||.|||-+|.+|..+. .+.+|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36888877776421 112233355666788643 456554 469999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE-----ecCcEEEEEcCCCcc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM-----KNGGRIIYFGPLGQH 814 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l-----~~~G~~v~~G~~~~~ 814 (1174)
||||+||-....+++++.|.+|.++|.|||++.|.+ ++.+.+|.++=| .+||++|..|+|++.
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 999999999999999999999999999999999975 688999999888 478999999999653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=256.61 Aligned_cols=126 Identities=24% Similarity=0.377 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC---CcEEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFM 749 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~---p~illl 749 (1174)
++||.|.+.|... ..+-.+.-+.|..+||..+ ..|.+. ..|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LGq~~-~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYL---PLGQNL-SSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCCCcC-CccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4677777777531 1123334567888888754 345543 36999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE-----ecCcEEEEEcCCCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM-----KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l-----~~~G~~v~~G~~~~ 813 (1174)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.++=| .+||+||+.|+|++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~ 1793 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKD 1793 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHH
Confidence 999999999999999999999999999999999975 678889999988 36799999999964
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=232.42 Aligned_cols=146 Identities=27% Similarity=0.375 Sum_probs=121.6
Q ss_pred cchhhhcCCCCCc-------cHHHHHHHhhhcc----chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 4 IKLEKLAGIFPDP-------DVDAYMKAISAEG----LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 4 ~~~~~~~~~~~~~-------~v~~~~~~~~~~~----~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.+.++..|++||. ++.+.++....-. .+..++++++++.+||.+.++.+++ ++|||||||++||
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia 148 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIA 148 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHH
Confidence 4567788888873 4446665433221 3446689999999999997777775 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKF 152 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~y 152 (1174)
.||+++|++|||||||+|||+.++..+++.|+++++..++||++|.|++. ++..+||+|++|++|+++++|+.++....
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999999865689999976554 77788999999999999999988877666
Q ss_pred Hhh
Q 001048 153 FEG 155 (1174)
Q Consensus 153 f~~ 155 (1174)
+..
T Consensus 228 ~~~ 230 (293)
T COG1131 228 FGG 230 (293)
T ss_pred hcc
Confidence 543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-23 Score=245.67 Aligned_cols=104 Identities=23% Similarity=0.407 Sum_probs=94.4
Q ss_pred hCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 43 LGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 43 lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
.++.+..||.||+. +..||||||||+||||||++||+||+|||+||+||+.||..|+++|++..+ +||||+ .+||
T Consensus 588 ~~~p~gY~T~VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv--IAHR 662 (716)
T KOG0058|consen 588 TNFPDGYNTVVGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV--IAHR 662 (716)
T ss_pred HhCccccccccCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE--Eehh
Confidence 57889999999992 223999999999999999999999999999999999999999999999874 588886 4789
Q ss_pred hhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 123 PETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 123 ~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
.+|++.+|+|+|+++|++++.|+|++.++
T Consensus 663 LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 663 LSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999987654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-23 Score=225.25 Aligned_cols=138 Identities=28% Similarity=0.369 Sum_probs=111.3
Q ss_pred chhhhcCCCCCccHH------HHHHHhh--hccchhhh-----HHHHHHHHhCCcccccccccCCCccc--CCccccchh
Q 001048 5 KLEKLAGIFPDPDVD------AYMKAIS--AEGLENSL-----QTDYILKILGLDICADTMVGDPMRRG--VSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~~v~------~~~~~~~--~~~~e~~~-----~v~~vl~~lgL~~~~dT~VG~~~~rG--LSGGqKkRv 69 (1174)
-.||..|+.||+.++ -.+|... .+.+|+.. .+...++ -|.+..||+||+ || |||||||||
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge---rglklSggekqrv 408 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE---RGLKLSGGEKQRV 408 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch---heeeccCchHHHH
Confidence 368999999999888 2333211 11222211 1222333 467889999999 66 899999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||.|+++|+||+|||+||+||+.+|+.++.+|++.+ .|+|.++ ..||.+|+-.+|.|+||++|+++|.|+|.+.
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlv--iahrlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLV--IAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEE--EeehhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 99999999999999999999999999999999999988 4677665 4689999999999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
++
T Consensus 485 l~ 486 (497)
T COG5265 485 LA 486 (497)
T ss_pred HH
Confidence 65
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-23 Score=226.48 Aligned_cols=140 Identities=25% Similarity=0.344 Sum_probs=112.9
Q ss_pred chhhhcCCCCCccHH------HHHHHhh--hccchhhhHH---HHHHHHhCCcccccccccCCCccc--CCccccchhHH
Q 001048 5 KLEKLAGIFPDPDVD------AYMKAIS--AEGLENSLQT---DYILKILGLDICADTMVGDPMRRG--VSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~~v~------~~~~~~~--~~~~e~~~~v---~~vl~~lgL~~~~dT~VG~~~~rG--LSGGqKkRvSI 71 (1174)
-.|+..|+.||++|+ -.++... ...+|..+.. +-==+.+++.+..+|+||+ || |||||||||+|
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE---RGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE---RGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh---cccccCCcchhhHHH
Confidence 468999999999888 2333222 1222221111 1112568999999999999 55 89999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+++++|.|++|||+||+||..+|+.||.+|.+++. +||.|+ ..||.+++-++|-|+++++|+++|.|.|++...
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV--vAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV--VAHRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE--EeeeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999999999999985 566554 367999999999999999999999999976553
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-22 Score=198.72 Aligned_cols=213 Identities=16% Similarity=0.255 Sum_probs=160.5
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeCC---cccccc----eEEEEccC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKV---QHTFAR----ISGYCEQN 667 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~---~~~~~~----~~~~v~Q~ 667 (1174)
+..++++++|+++.+||+-+++|.||||||-..|+|+|..+.. .+.....+++.++- ....|+ .+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4568999999999999999999999999999999999965431 22344556665532 222333 46789998
Q ss_pred CC--CCCCCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 668 DI--HSPNITVEESIVFSAWLRLSTQIDS---KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 668 ~~--~~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
+. +-|.-+|...+.-.......++... .-++.++-+++..+|+.+..|-.-.+| .+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--chhccCcceeeeeehhhcc
Confidence 74 3344444433322211111111000 113456778899999998888776665 4799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||.. .+-+-+|++-++.- |+-++.++.++
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e~ 245 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSEE 245 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchhH
Confidence 9999999999999999999999999999975 4899999999985 67788999999975 89999998753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-22 Score=226.36 Aligned_cols=144 Identities=21% Similarity=0.277 Sum_probs=112.8
Q ss_pred ccchhhhcCCCCCccHHH---HHHHhhhc-cchhhhHHHHHHHHh-------CCcccccccccCCCcccCCccccchhHH
Q 001048 3 VIKLEKLAGIFPDPDVDA---YMKAISAE-GLENSLQTDYILKIL-------GLDICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~---~~~~~~~~-~~e~~~~v~~vl~~l-------gL~~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
.+-.|+.+|+.||+.++. .+..+... ..-..++|-++-+.. .|++..+|.||+. ++-|||||||||||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvsl 498 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSL 498 (591)
T ss_pred hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchHHHHHH
Confidence 456799999999987772 22222211 000111233333433 4567889999992 22399999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||++++||+|++||||||.||+.||.++++.+.+.. .+||+|+-. |+.++...||+|++|++|++.+.|+|++++.
T Consensus 499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~Iv--H~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 499 ARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIV--HRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEE--ecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999999943 589999854 5888999999999999999999999998776
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=195.49 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=117.6
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.+|+..|+.+. .++.+.++.. .+...|.+.+++++.+.|+|.+|.|+++|+ +|-|+||||+|||
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iAR 146 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIAR 146 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHH
Confidence 45666666553 4455555532 355777788999999999999999999987 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
||+.+|+|++|||||||||-.+.+.+.+.++++.. .|++||.|-| -.+++-++||++++|.+|++|+.|+.+.
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 99999999999999999999999999999999864 6999999864 6778888999999999999999998754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-22 Score=202.21 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=103.0
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
.+.-+.|+.+|+.+.+-++.+. |||||+|||+|||+|+.+|+|++-||||++||+.++.+||+.|+++++..|.|
T Consensus 126 ~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~T 200 (258)
T COG3638 126 AQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT 200 (258)
T ss_pred HHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCE
Confidence 4556789999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
+|+++||=- -.-+.||||+=|.+|+++|.||++++.+
T Consensus 201 vi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 201 VIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999998653 4568899999999999999999876544
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=239.83 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=115.9
Q ss_pred cccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHH-------hCCcccccccccCCCcccCCccccch
Q 001048 2 EVIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKI-------LGLDICADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~-------lgL~~~~dT~VG~~~~rGLSGGqKkR 68 (1174)
+.+..|+..|+.||++.+ +.+....++-. .+++.+.++. ..|....||.||+ ++.+||||||||
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~--~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQr 617 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQR 617 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC--HHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHHH
Confidence 567889999999998877 44443222211 1223333332 3567788999998 455699999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
++|||+|+++|+||+||||||+||+.|+..|.+.|+++. .|+|+|+- .||.++++.+|||+||.+|+++++|+|++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~I--aHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIII--AHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEE--EccchHhhhccEEEEccCCceeccCCHHH
Confidence 999999999999999999999999999999999999986 46888864 57889999999999999999999999987
Q ss_pred HHH
Q 001048 149 SCK 151 (1174)
Q Consensus 149 ~~~ 151 (1174)
...
T Consensus 694 ll~ 696 (709)
T COG2274 694 LLA 696 (709)
T ss_pred HHH
Confidence 765
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-21 Score=215.65 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=152.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++++|+...+. .+..+++|+|++|+.|+-+.|+||||||||+|+++|+|+.+ ..+|++.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccC
Confidence 57999999875321 13568889999999999999999999999999999999987 346877653221
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC------CCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP------GVNG 725 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~------~~~~ 725 (1174)
- .+.+-|+||.|.+ +..|.||.+.|...--. ...+....+++.+.|+.++|.|..++.-|-. ....
T Consensus 499 ~-----~~~lfflPQrPYm-t~GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYM-TLGTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCc-cccchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 1346899999865 56699999988632111 1111223456778888888887765543321 1235
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+ +.+.++-.+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~k-fHd~~L~~~ 640 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWK-FHDYVLRMD 640 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHh-hhhEEEEec
Confidence 999999999999999999999999999999999999999888876 4999999999865 344 444444444
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-21 Score=195.91 Aligned_cols=137 Identities=25% Similarity=0.332 Sum_probs=120.1
Q ss_pred hcCCCCCccHHHHHHHhhh----ccchhhhHHHHHHHHhCCcc--cccccccCCCcccCCccccchhHHHHHHhcCCcEe
Q 001048 9 LAGIFPDPDVDAYMKAISA----EGLENSLQTDYILKILGLDI--CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRAL 82 (1174)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~----~~~e~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL 82 (1174)
..|++||.+|.+.+..++. ++++.+++++++|+.+||+. -+|.. .+.|||||+|||-|||||..+|+||
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeE
Confidence 3567999999987766552 36677889999999999974 45554 4569999999999999999999999
Q ss_pred eeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 83 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 83 ~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
++|||-++|||-++.++|+-++++-+..++|+|.- .|--.|.++++|||++|++|+++-+|++++.+.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998889999975 468999999999999999999999999887765
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=207.41 Aligned_cols=114 Identities=26% Similarity=0.397 Sum_probs=104.0
Q ss_pred chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHh
Q 001048 30 LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~ 109 (1174)
++-.+.|++.|+.+|+++-++..+.+ |||||||||.||+||+.+|+||+||||||.||-....+|++.+++++++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 33344789999999999999999977 9999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 110 ~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.|+|+|+++|-+. -..+.+|++++|.+|+++.+|++++.
T Consensus 188 ~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 188 KGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 8999999988655 56799999999999999999987543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-21 Score=206.41 Aligned_cols=140 Identities=23% Similarity=0.351 Sum_probs=114.0
Q ss_pred ccchhhhcCCC-CCccHH-------H----HHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhH
Q 001048 3 VIKLEKLAGIF-PDPDVD-------A----YMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 3 ~~~~~~~~~~~-~~~~v~-------~----~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
..+.|+..|+. ++||-| + .........+|..++++++|+.+||.+.+|...-+ |||||||||+
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRva 148 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVA 148 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHH
Confidence 34566667763 334444 1 22223344556778999999999999999988754 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
||.+|+.+|++|+|||||||||+.+...+++.++++.+..|.|+|+..| -...+...+|++++|++|+++++|++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHH
Confidence 9999999999999999999999999999999999999876788887654 5567777799999999999999998643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=213.41 Aligned_cols=212 Identities=20% Similarity=0.252 Sum_probs=135.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++.. ..++.+++|++|++.+|+-++|+|+|||||||+|++|.|+..+.|..=.++.-.++.
T Consensus 75 dvk~~sls~s-------------~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~ 141 (614)
T KOG0927|consen 75 DVKIESLSLS-------------FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI 141 (614)
T ss_pred cceeeeeeec-------------cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC
Confidence 4666777663 235789999999999999999999999999999999999876544332333322221
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHh-hcc----------------CCCCCHHHHHHHHHHHHHHcCC-CCcc
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAW-LRL----------------STQIDSKTKAEFVNEVLQTIEL-DGIK 714 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~l~~l~l-~~~~ 714 (1174)
.... .+.+-++.+ +....+.-+.+-.. +.. ....+.+..+.++.+++..+|. .+..
T Consensus 142 ~ps~-~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 142 EPSE-KQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred CCch-HHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 1110 000001110 11111111111100 000 0011222333445555555553 3445
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
++.+ .++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+..+ .++++++|.-+ .+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhh
Confidence 5554 47999999999999999999999999999999999999999998877532 28999999754 3445667
Q ss_pred ceeEEecCcE-EEEEcCCC
Q 001048 795 DLVLMKNGGR-IIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~-~v~~G~~~ 812 (1174)
+++-+. .++ +.|.|+-+
T Consensus 288 ~Ii~l~-~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 288 NIIHLD-NKKLIYYEGNYD 305 (614)
T ss_pred hhheec-ccceeeecCCHH
Confidence 777776 467 66677754
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=198.35 Aligned_cols=166 Identities=15% Similarity=0.143 Sum_probs=115.7
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE--CCee---C-CcccccceEEEEccCCCCCCCCC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI--GGYP---K-VQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~--~g~~---~-~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++++++++.+| +.+|+||||||||||+.+|..... |+... .|.. . ........+.+.+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 36677888887 889999999999999999874221 11110 1211 0 11112344677777755443
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh----hcCCcEEEEeC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL----VANPSIIFMDE 751 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al----~~~p~illlDE 751 (1174)
| ... ....+.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++|||
T Consensus 83 ---~-----------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 011 1123456677765 44445544 46999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc---CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 752 PTSGLDARAAATVMRAVKNVVET---GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+|||+.++..+.+.|+++.++ +.|||+++|+++ ++ ..+|++-++..
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i-~~~d~v~~~~~ 190 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GL-ASSDDVKVFRM 190 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cc-ccccceeEEEe
Confidence 99999999999999999998643 368999999875 34 45588888754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-21 Score=196.25 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=117.0
Q ss_pred cccchhhhcCCCCCc-------cHHH----HHH-HhhhccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccch
Q 001048 2 EVIKLEKLAGIFPDP-------DVDA----YMK-AISAEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 2 ~~~~~~~~~~~~~~~-------~v~~----~~~-~~~~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkR 68 (1174)
|+.+.|+.+|++=|+ +|.+ -|+ ....++.+.++.+..=|+..||... +|-.-.+ ||||+|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KR 153 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSE-----LSGGMRKR 153 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchh-----hcchHHHH
Confidence 455788889986663 3333 222 2334455666677777899999987 6665544 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+++||||+.||.|||+|||||||||.++..+.+.++++.+..|.|+++- .|.-++++..+|++++|.+|+++.+||+++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998888888874 456779999999999999999999999876
Q ss_pred HH
Q 001048 149 SC 150 (1174)
Q Consensus 149 ~~ 150 (1174)
..
T Consensus 233 l~ 234 (263)
T COG1127 233 LL 234 (263)
T ss_pred HH
Confidence 54
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-21 Score=211.22 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=117.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-C-Cc------ccccce--EEEEccCCCC-CCCCCHHHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-K-VQ------HTFARI--SGYCEQNDIH-SPNITVEESIVF 682 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~-~~------~~~~~~--~~~v~Q~~~~-~~~lTv~e~l~~ 682 (1174)
+++|+||||||||||+++|++...+ ..|++..++.. . .. ...... +.|..|++.. ....++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 9999999999999999999986542 23555433211 0 00 001112 3344443221 11111111100
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc----------cc-CC------CCCCCCHHHHHHHHHHHHhhcC--
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL----------VG-LP------GVNGLSTEQRKRLTIAVELVAN-- 743 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------~~-~~------~~~~LSgGqrqRv~ia~al~~~-- 743 (1174)
..+... +....+.++++++.+|+....... .. .| .+..||||||||++||++++.+
T Consensus 101 --~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 101 --SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred --EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 011111 111233456788888885321111 00 01 1256999999999999999875
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 744 --PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 744 --p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|++++|||||+|||+..+..+.+.|++++++|.|+|++||++ ++.+.+|+++++.+++.
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 899999999999999999999999999987799999999984 67788999999987653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-21 Score=217.77 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=114.3
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|+++|+ ++.+.+.... ..+.+..+++.++++.+||.+..|...++ |||||||||+|||
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~IAR 153 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAIAR 153 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHH
Confidence 346677877764 3444443211 22344556789999999999999988755 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||+++|+||+|||||||||+.++..+++.|+++.+..|.|+|++.|+ ...+.+.+|+|++|++|++++.|++++.
T Consensus 154 AL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 154 ALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999987668899987765 4566788999999999999999987654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=213.24 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=115.7
Q ss_pred chhhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|++|| .++.+.+.... ....+..++++++++.+||.+.+|+.+++ ||||||||++||+
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 151 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLAR 151 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHH
Confidence 34667788776 34555554322 12233445788999999999999999965 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|++. ++.+.+|+|++|++|++++.|++++..
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999975 5889999877655 778899999999999999999987654
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-21 Score=209.70 Aligned_cols=209 Identities=27% Similarity=0.510 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHH
Q 001048 899 EQFKACMWKHNLSYWRNPSYN-LIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVT 977 (1174)
Q Consensus 899 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 977 (1174)
+|++.+++|+++..+|||.+. ...++..++.++++|.+|.++++ +.++. ++.|++++.+.+..+...........
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 89999999999999999998862 22233 66788887777776555555545677
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001048 978 TERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSL 1057 (1174)
Q Consensus 978 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~ 1057 (1174)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999987 77777888888888899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhh
Q 001048 1058 TPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQY 1113 (1174)
Q Consensus 1058 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef 1113 (1174)
+++.+.+..+.+++..++++++|.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=185.34 Aligned_cols=138 Identities=21% Similarity=0.337 Sum_probs=117.6
Q ss_pred chhhhcCCCCC-------ccHHHHHHH----hhh--ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKA----ISA--EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~----~~~--~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
++|...|..|| .+|.+.+.. ... ++.|++.+.|++|++|+|.|++|..-.. ||||||||+-|
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EI 150 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEI 150 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHH
Confidence 45677788888 344443332 222 2346666789999999999999998766 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||..+|+.++||||-+|.||-+-.+|++.++.+.+ +|.-|++|=|.-+ ||+..+||.+++++|+++.+|++++.
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 9999999999999999999999999999999999986 5899999988776 89999999999999999999988644
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=233.64 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=114.0
Q ss_pred cchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..+++||+. +.+.+..-.. .-.++++++.++..||. +..||.||+. +..||||||||++
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRia 495 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLA 495 (588)
T ss_pred HHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHH
Confidence 46788899999954 4466654321 12234567777777765 4679999984 4459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+||||||+||+.++..|++.|+++. .++|+|+-.|++ ++++.+|+|++|.+|++++.|+|++..
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999999999999999999999999875 478888766665 788999999999999999999987664
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-20 Score=193.59 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=102.7
Q ss_pred CCCCCccHHHHHHH---hh-hccchhhhHHHHHHHHhCCccccc-ccccCCCcccCCccccchhHHHHHHhcCCcEeeee
Q 001048 11 GIFPDPDVDAYMKA---IS-AEGLENSLQTDYILKILGLDICAD-TMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 85 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~---~~-~~~~e~~~~v~~vl~~lgL~~~~d-T~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LD 85 (1174)
.+.|+.++.+.+.. .. ....++.+.++++++.+||.+..+ ....+ |||||||||||||||+.+|+|++.|
T Consensus 93 nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHHHHHHHHHhcCCCeEEee
Confidence 34666777776552 11 112155677899999999997776 77765 9999999999999999999999999
Q ss_pred CCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 86 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 86 EPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
|||..||+.++..|++.|+++++..|+|+|+..| .+++...+||++.|.+|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999888999998765 667788999999999999
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-20 Score=181.01 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=112.9
Q ss_pred CCCCCccHHHHHHH-hh---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKA-IS---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~-~~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+++|.+|...+.. .. .-..|..+.|+.++...||..+.+.+-|. |||||||||++||.||++-+||+|||
T Consensus 81 NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 81 NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecC
Confidence 45666777655431 11 11334445689999999999999998876 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|-|+||+.-+.+....+.+++.+++.|+++-.|||. +..+.+|+++++++|++.++|+.++
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHH
Confidence 999999999999999999999999999999888876 7789999999999999999998653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-20 Score=191.63 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=106.8
Q ss_pred CCCccHHHHHHHhhhc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCC
Q 001048 13 FPDPDVDAYMKAISAE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 90 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSG 90 (1174)
.|-.+|...+...... -.+.++++.++|+.+||....=.+ +...|||||||||||||||+.+|++|+||||||+
T Consensus 96 nP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 96 NPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred CcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc----CchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 4445666655533221 222334589999999999744332 2245999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 91 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 91 LDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+....+|++.|.++.+.++.|.|+ |-|-..-+..+||||+||.+|++++.+|.++...
T Consensus 172 LD~siQa~IlnlL~~l~~~~~lt~l~-IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 172 LDVSVQAQILNLLLELKKERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hcHHHHHHHHHHHHHHHHhcCceEEE-EeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999888888886 4556677888999999999999999999765443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-20 Score=210.14 Aligned_cols=139 Identities=24% Similarity=0.374 Sum_probs=114.6
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ |||||||||+||++
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 138 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAAS 138 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHH
Confidence 45667887773 4445554321 11233345789999999999999999866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+ .++.+.+|+|++|.+|++++.|++++...
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999975 488999987765 47788999999999999999999876543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-20 Score=208.41 Aligned_cols=153 Identities=18% Similarity=0.253 Sum_probs=118.9
Q ss_pred chhhhcCCCCCcc--------HHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|.. +.+.+.... ....+..++++++++.+||. +..|+.+++ |||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~l 156 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE-----LSGGQMRRVAI 156 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCccc-----CCHHHHHHHHH
Confidence 4556788888742 222222111 12233345789999999997 567887755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH--
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS-- 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~-- 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++++..|.|||++.|.+. .+.+.+|||++|.+|++++.|++++.
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999998766889998877665 67788999999999999999987654
Q ss_pred -HHHHhhCCCCCCCC
Q 001048 150 -CKFFEGCGFRCPDR 163 (1174)
Q Consensus 150 -~~yf~~~G~~~p~~ 163 (1174)
...+...|..+|..
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 236 DPDELEAIGLDLPET 250 (290)
T ss_pred CHHHHHHCCCCCCHH
Confidence 23344556655543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-20 Score=212.08 Aligned_cols=132 Identities=23% Similarity=0.260 Sum_probs=112.4
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 87 LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345567777665321 23345556789999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999876688999887755 578999999999999999999987644
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-20 Score=196.49 Aligned_cols=109 Identities=26% Similarity=0.383 Sum_probs=100.6
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.+.|++.|+.+|+.+.+|..+|+ |||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++ |+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~ 190 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK 190 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC
Confidence 46799999999999999999998 9999999999999999999999999999999999999999999999986 99
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||++. ||--..+.+.||+|+.|+ ++++++|++++.
T Consensus 191 tIl~v-tHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 191 TVLMV-THDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred EEEEE-eCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99985 567778999999999995 678999988654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=206.97 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=123.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. ++.+.+.... ..+.+..++++++++.+||. +..+..+. .||||||||++|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqkqrvai 155 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQMRRVAI 155 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc-----cCCHHHHHHHHH
Confidence 456677877764 2223332111 12344456789999999996 45677664 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH--
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS-- 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~-- 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||++.|.+ ..+.+.+|+|++|.+|+++++|++++.
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999999875 588999887765 567789999999999999999998765
Q ss_pred -HHHHhhCCCCCCCCCChhHHH
Q 001048 150 -CKFFEGCGFRCPDRKGVADFL 170 (1174)
Q Consensus 150 -~~yf~~~G~~~p~~~n~adfl 170 (1174)
.+++...|+.+|.....++.+
T Consensus 234 ~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 234 EVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred CHHHHHHcCCCCChHHHHHHHH
Confidence 344567788877655554433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-20 Score=202.37 Aligned_cols=137 Identities=22% Similarity=0.240 Sum_probs=111.4
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|++||. ++.+.+.... ..+.+..++++++++.+||.+..++.+++ |||||||||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~ 149 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALAR 149 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 35566776663 5555554221 11223345688999999999888888865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|.+. .+.+.+|+|++|.+|++++.|++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999999998655789998877655 5778899999999999999998653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-20 Score=229.18 Aligned_cols=142 Identities=26% Similarity=0.337 Sum_probs=111.1
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHh-------CCcccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKIL-------GLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~l-------gL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..++.||+..+ +.++.-..+ -.++++.+.++.- .|.+..||.||+ .+..||||||||+
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQrl 474 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRL 474 (567)
T ss_pred HHHHHHhccEEcccceeecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHHHH
Confidence 34568889999985544 455432211 1223344454433 345578999996 4455999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||++++||+||+||||||+||+.|+..|+++++++. .+||+++ ..||.++++.+|+|+||++|++++.|+|++.
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii--IaHRlsti~~aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI--IAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE--EeccHhHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999876 3577776 3567789999999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
..
T Consensus 551 l~ 552 (567)
T COG1132 551 LA 552 (567)
T ss_pred HH
Confidence 54
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=205.55 Aligned_cols=152 Identities=23% Similarity=0.309 Sum_probs=118.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc--ccccccccCCCcccCCccccchhH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD--ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
+.|+..|++||. ++.+.+.... ..+.+..++++++++.+||. +..|+.+++ ||||||||++
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~qrv~ 154 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKRRVA 154 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHHHHH
Confidence 445677887774 2334333211 12334456789999999997 667877754 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||++|+.+|+||+|||||+|||+.++..+++.|+++++..|+|||++.|.+ .++.+.+|+|++|++|++++.|++++..
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999875688999887765 4677889999999999999999887653
Q ss_pred H---HHhhCCCCCCC
Q 001048 151 K---FFEGCGFRCPD 162 (1174)
Q Consensus 151 ~---yf~~~G~~~p~ 162 (1174)
+ .....|+.+|.
T Consensus 234 ~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 234 KEVETLESIGLAVPQ 248 (287)
T ss_pred hCHHHHHHcCCCCCh
Confidence 2 23345655543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-20 Score=209.77 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=113.2
Q ss_pred CCCCccHHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+... . ..+.+.+++++++++.+||++..|....+ |||||||||+|||+|+.+|++|+||||
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44556777766532 1 12345567899999999999999988755 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||..++..+.+.|+++.+..+.|+|+..|.+ .++.+++|+|++|++|+++++|++++..
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999876688999887766 4889999999999999999999876543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=209.17 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=111.9
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 456667777665321 22345566899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhC-CCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~-~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+.+.|+++.+.. |.|+|++.|.+ .++.+++|+|++|.+|+++.+|++++.
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999998764 78888876654 467899999999999999999987654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=208.14 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=111.4
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|...++ |||||||||+|||+|+.+|+||+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 344557776664322 12344566889999999999988988866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..++|+|++.|.. .++.+++|+|++|.+|+++..|++++..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999766688999877644 4578999999999999999999876543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=208.21 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=113.0
Q ss_pred CCCCCccHHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+... . ..+.+.+++++++++.+||.+..|....+ |||||||||+|||+|+.+|+||+|||
T Consensus 88 ~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL~~~P~lLLLDE 162 (351)
T PRK11432 88 ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLLFDE 162 (351)
T ss_pred ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345666777766532 1 23455667899999999999988887755 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||+.++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|++|+++..|++++.
T Consensus 163 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999876688998877655 578899999999999999999987654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=208.03 Aligned_cols=140 Identities=24% Similarity=0.298 Sum_probs=115.6
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ ||||||||++||+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~ 185 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLAR 185 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHH
Confidence 345667887763 4455554321 11223345678899999999999999976 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
+|+++|++|+|||||+|||+.++..+++.|+++++ .|+|||++.|.. .++-+.+|+|++|++|+++++|++++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999976 589999987755 47888999999999999999999876643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-20 Score=209.97 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=112.9
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
|+..|++|| .++.+.+.... ..+.+..++++++++.+||.+..|+.+++ |||||||||+||++|
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL 155 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARAL 155 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 556676665 35555554221 12233445789999999999988888765 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|++. .+.+++|++++|.+|++++.|++++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999998766889999877664 67788999999999999999987654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=205.65 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=115.8
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. ++.+.+.... .+..+..++++++++.+||. +..+..+.+ |||||||||+|
T Consensus 113 ~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqRvai 187 (320)
T PRK13631 113 ELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-----LSGGQKRRVAI 187 (320)
T ss_pred HHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc-----CCHHHHHHHHH
Confidence 456778887774 2323332111 12233345789999999997 556666544 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH-
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC- 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~- 150 (1174)
|++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|+|++.|.+. .+.+.+|+|++|.+|++++.|++++..
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 5889988776544 567889999999999999999987542
Q ss_pred --HHHhhCCCCCCC
Q 001048 151 --KFFEGCGFRCPD 162 (1174)
Q Consensus 151 --~yf~~~G~~~p~ 162 (1174)
..+...|+.+|.
T Consensus 266 ~~~~~~~~~~~~p~ 279 (320)
T PRK13631 266 DQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHcCCCCCh
Confidence 334455666554
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=174.43 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=149.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++.++.|.++. ..+++-|+|++++.|....++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 45888899887643 237899999999999999999999999999999999975422 3888999875
Q ss_pred CCc--------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc
Q 001048 652 KVQ--------------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 652 ~~~--------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
.-. ..+.+..+.-- +-.+..+.++.+ +.|+.. ..+. ++-+++++.++++-.. +
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~W--R 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLRW--R 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccceE--E
Confidence 311 01222222222 112223556654 444421 1122 3445667767664322 1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. +.+|-|||+||.|+..|++.=++|+|||-|--||..++..+++.+++-.++ |.||+..||-.+ -+..-..++
T Consensus 145 m-----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 M-----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred E-----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 1 359999999999999999999999999999999999999999999988764 999999999865 455556677
Q ss_pred eEEecCcEEEEEcCC
Q 001048 797 VLMKNGGRIIYFGPL 811 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~ 811 (1174)
+.+. +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 7775 6999875544
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=207.87 Aligned_cols=133 Identities=22% Similarity=0.271 Sum_probs=112.6
Q ss_pred CCCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+.. |||||||||+|||+|+.+|++|+|||
T Consensus 96 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4566677877665321 12334456789999999999999998855 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||..++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999876688888876654 578899999999999999999987654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=229.83 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=112.2
Q ss_pred ccchhhhcCCCCCccH------HHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDV------DAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v------~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+.. .+.+..-.. -.++++.+.++..||.+ ..||.+|+. ++.||||||||+
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRi 597 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRL 597 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHH
Confidence 3467889999999654 355543211 23345778888888764 468999984 456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+++|+||+||||||+||+.++.++++.|+++ ++|+|+..| +.++++.+|+|++|++|+++++|++++.
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItH--r~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAH--RLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEec--ChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999885 467777656 4588999999999999999999998765
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 672 l 672 (686)
T TIGR03797 672 M 672 (686)
T ss_pred H
Confidence 4
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=206.00 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHhh--------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeee
Q 001048 13 FPDPDVDAYMKAIS--------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFM 84 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~--------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~L 84 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+.+ |||||||||+|||+|+.+|++|+|
T Consensus 86 ~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 86 FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44456666665321 12334456889999999999999988865 999999999999999999999999
Q ss_pred eCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 85 DEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 85 DEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||||+.++..+.+.|+++.+..+.|+|+..| ...++.+++|+|++|++|++++.|++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH-d~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH-DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999998766888887655 44688899999999999999999987654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=202.54 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=113.1
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|++||. ++.+.+.... ..+.+..++++++++.+||. +..|+.+.+ |||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHHHHHHHH
Confidence 457788988884 2333333211 12334456789999999997 678887754 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++.+..|+|+|++.|.+. .+.+.+|+|++|++|++++.|++++.
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999997656889998877555 57788999999999999999987653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=199.60 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ |||||||||+||++|+.+|+||+|||||+|||..++..+.+.|+++++..|
T Consensus 137 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 137 REERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred HHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999989998866 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|+++++|++++.
T Consensus 212 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 212 KTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89998887654 57788999999999999999987543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=201.36 Aligned_cols=151 Identities=23% Similarity=0.258 Sum_probs=117.3
Q ss_pred chhhhcCCCCCcc--------HHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|++||.. +.+.+... .....+..++++++++.+||.+..|+.+++ ||||||||++||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~la 153 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 153 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 4566788877742 22333221 112333345789999999999988888866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH-
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK- 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~- 151 (1174)
++|+.+|+||+|||||+|||+.++..+.+.|+++++..|+|+|++.|.+. .+.+.+|++++|.+|++++.|++++...
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998755889998876554 4567899999999999999999876432
Q ss_pred --HHhhCCCCCC
Q 001048 152 --FFEGCGFRCP 161 (1174)
Q Consensus 152 --yf~~~G~~~p 161 (1174)
.....|..+|
T Consensus 233 ~~~~~~~~~~~~ 244 (283)
T PRK13636 233 KEMLRKVNLRLP 244 (283)
T ss_pred HHHHHHcCCCCC
Confidence 2334454443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-19 Score=206.81 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=113.7
Q ss_pred chhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCcc------cccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLDI------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.-||.+...||+- +.+.+...... -.++++.++++.-||.+ ..||.+|+ .++||||||+|||++|
T Consensus 392 ~~~k~i~~v~Q~p~lf~gTireNi~l~~~~--~s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 392 AWRKQISWVSQNPYLFAGTIRENILLARPD--ASDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALA 468 (559)
T ss_pred HHHhHeeeeCCCCccccccHHHHhhccCCc--CCHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHH
Confidence 4567788878743 33555433322 22346788888888865 45899998 5678999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+++++++++||||++||..||..|++.|.++++ ++|+++.. |+......+|+|++|++|+++++|.+++..
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~it--Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT--HRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEE--cChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999999999999999999999999999999986 47777644 588899999999999999999999987654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=195.76 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..++.+++ |||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++..|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++.
T Consensus 196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 89998877665 57779999999999999999987543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=203.79 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=113.4
Q ss_pred hhhhcCCCCC------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPD------PDVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+...+.+| .++...++...++ -..+.+-++++..||+| ..||.+|+ .+++||||||||++||
T Consensus 410 ~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~--AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlA 486 (573)
T COG4987 410 LRETISVLTQRVHLFSGTLRDNLRLANPD--ASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALA 486 (573)
T ss_pred HHHHHhhhccchHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHH
Confidence 5677888887 4455666654433 23345778899998876 45778998 5677999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+|++|.++++|||||.|||+.+|.+|++.|..-+ +|+|+|+-.| +..-.+.||||++|.+|++++.|.+++...
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTH--rL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTH--RLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEec--ccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999865 5889997554 556678999999999999999999876543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=206.51 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=112.2
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
++|+.+|.+.+.... ..+.+..++++++++.+||.+..|..+.+ |||||||||+|||+|+.+|++|+||||
T Consensus 102 lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 102 LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455567777775321 12344566789999999999988888755 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||..++..+.+.|+++.++.|.|+|+..|.+. ++.+++|+|++|.+|+++..|++++..
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999987766889998777544 788999999999999999999876543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=200.29 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=112.8
Q ss_pred chhhhcCCCCCcc--------HHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|++||.. +.+.+.... ..+.+..++++++++.+||++..++.+++ ||||||||++||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~la 156 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAIA 156 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 3467788888753 222222111 12333456789999999999999998865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|.+.. + ..+|++++|++|+++++|++++.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999976568899998888875 3 34999999999999999998764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=206.53 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=109.7
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|++|+|||||
T Consensus 87 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 87 YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34456666654321 12234456789999999999988988865 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||..++..+.+.|+++.+..|.|+|++.|.+. ++.+++|+|++|.+|++++.|++++.
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999998766889998877664 78899999999999999999987644
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-19 Score=221.40 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=115.5
Q ss_pred cchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc------cccccccCCCcccCCccccchhHH
Q 001048 4 IKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI------CADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~------~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
...|+..|++||+... +.++.... ...++++++.++..||.+ ..||.||+. ++.||||||||++|
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred HHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 4567889999986544 44433211 223456888999999975 368999984 45599999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+|+++|+||+||||||+||+.++..+++.|++.. .++|+|+..|++ ++.+.+|+|++|++|++++.|+|++..+
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 478888877766 5678899999999999999999876543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-19 Score=195.07 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred hhhhcCCCCCc------cHHHHHHHhh-hc----cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAIS-AE----GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~-~~----~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... .. ..+..++++++++.+||.+..+..+. .+.||||||||++||++
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~a 155 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHH
Confidence 45667887775 3444443211 11 11234568899999999987777641 13499999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++. +|+|++.|.+. .+.+.+|++++|.+|++++.|++++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999763 78888877654 6778899999999999999998653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-19 Score=202.08 Aligned_cols=138 Identities=23% Similarity=0.400 Sum_probs=113.5
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ..+.+..++++++++.+||.+..|+.+++ ||||||||++||++
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 147 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 45667777763 4555554322 12233345789999999999999998865 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+++|++|+|||||+|||+.+...+++.|+++++ ++|+|++.|.+. ++-+++|+|++|.+|++++.|+.++..+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999863 688888876554 7888999999999999999999876544
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-19 Score=197.61 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=109.8
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+++..|+.||+ ++.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~lar 151 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIAG 151 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHHH
Confidence 45567877774 3334443211 11223345689999999999988998865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+++|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+. .+.+.+|+|++|++|++++.|+++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999976 4889998777543 5668899999999999999998754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=201.19 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=116.2
Q ss_pred chhhhcCCCCCc--------cHHHHHHHh----hhccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAI----SAEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. +|.+.+... ...+++..++++++++.+||. +-.|..+.+ |||||||||+|
T Consensus 102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrval 176 (305)
T PRK13651 102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVAL 176 (305)
T ss_pred HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHH
Confidence 456678888874 333333311 122334456789999999997 667877755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH-
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC- 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~- 150 (1174)
|++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+..|. ...+.+.+|+|++|.+|++++.|++++..
T Consensus 177 A~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999975 58898887654 34677899999999999999999986642
Q ss_pred --HHHhhCCCCCCC
Q 001048 151 --KFFEGCGFRCPD 162 (1174)
Q Consensus 151 --~yf~~~G~~~p~ 162 (1174)
+.....|...|.
T Consensus 255 ~~~~~~~~~~~~p~ 268 (305)
T PRK13651 255 DNKFLIENNMEPPK 268 (305)
T ss_pred CHHHHHHCCCCCCh
Confidence 223344555443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-19 Score=199.45 Aligned_cols=138 Identities=16% Similarity=0.204 Sum_probs=112.2
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
++|+..|+++|. ++.+.+.... ..+.+..++++++++.+||++..|..+++ ||||||||++||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lA 152 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIA 152 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 345667877774 2334443211 12333445789999999999988888865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|.+.. + ..+|+|++|.+|+++..|++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999987568999998888653 4 57999999999999999987654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-19 Score=227.74 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=113.0
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.+..|+..|++||+... +.+.... ....++++.+.++..||.+ ..||.+|+. ++.||||||||+
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~--~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRi 624 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRL 624 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCC--CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHH
Confidence 34578999999996544 4443221 1223445777888877654 568999974 456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+.+.|++ .++|+|+..| +.++++.+|+|++|++|+++++|++++.
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitH--rl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAH--RLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEec--CHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999986 3678887655 5578899999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 699 l~ 700 (710)
T TIGR03796 699 WA 700 (710)
T ss_pred HH
Confidence 54
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-19 Score=194.42 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=99.1
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|+
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 188 (239)
T cd03296 114 RAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 (239)
T ss_pred HHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999888888865 9999999999999999999999999999999999999999999999865588
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+|++.|++ .++.+.+|++++|.+|++++.|++++
T Consensus 189 tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 189 TTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999888876 46778899999999999999998654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-19 Score=201.07 Aligned_cols=138 Identities=23% Similarity=0.285 Sum_probs=113.1
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ |||||||||+||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 149 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARA 149 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 35667776663 4555554211 11223345678899999999999999866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+. ++.+.+|+|++|.+|++++.|++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999976 5889999877664 777889999999999999999987654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=191.57 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999988888865 999999999999999999999999999999999999999999999986558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|+|++.|.+. .+.+.+|++++|.+|++++.|
T Consensus 182 ~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 182 ITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 89998777554 677889999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-19 Score=193.33 Aligned_cols=111 Identities=28% Similarity=0.408 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 108 RRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999988998866 999999999999999999999999999999999999999999999986557
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++
T Consensus 183 ~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 183 MTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 88888766544 6778899999999999999997643
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=225.62 Aligned_cols=142 Identities=20% Similarity=0.312 Sum_probs=114.2
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+... +.+..... .-.++++.+.++..||. +..||.+|+. +..||||||||+
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRl 610 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAV 610 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHH
Confidence 34578899999997554 45542211 12234567777777764 4579999983 455999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+++.|+++. .++|+|+..|++ ++.+.+|+|++|++|+++++|+|++.
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999976 367888766655 68899999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 687 l~ 688 (694)
T TIGR03375 687 LE 688 (694)
T ss_pred HH
Confidence 54
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-19 Score=193.28 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=106.3
Q ss_pred CCCccHHHHHHHhh------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 13 FPDPDVDAYMKAIS------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.++.++.+.+.... ..+.+..++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||
T Consensus 66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDE 140 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDE 140 (230)
T ss_pred CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34446666554321 11223345678999999999988888765 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
||+|||+.++..+.+.|+++++..|+|+|++.|.+. ++.+.+|++++|.+|++++.|+..
T Consensus 141 Pt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence 999999999999999999988656889998877654 677889999999999999999753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-19 Score=201.92 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=109.4
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+.+ |||||||||+||++|+.+|++|+|||||
T Consensus 54 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 54 FPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred cCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 34446666655321 12233445789999999999988888755 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+.++..+.+.|+++.+..|+|+|++.|.+ .++.+++|+|++|.+|++++.|++++.
T Consensus 129 s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 129 SALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999876688999887765 478899999999999999999987654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-19 Score=220.78 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=114.8
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.+..|+..+++||+..+ +.+..- +...+++++++++..||.+ ..||.+|+ .+..||||||||+
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~---~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRi 485 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLG---RDISEEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLL 485 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhC---CCCCHHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHH
Confidence 34668889999996544 444432 2223446888999998664 56899998 3445999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+..|+| ++.+.+|+|++|++|++++.|++++.
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998753 67888776766 77889999999999999999999766
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 562 ~ 562 (592)
T PRK10790 562 L 562 (592)
T ss_pred H
Confidence 4
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=202.52 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=99.7
Q ss_pred cchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHh
Q 001048 29 GLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la 107 (1174)
+.+..+++.++|+.+||. +..|..+++ |||||||||+||+||+.+|++|++||||+|||..++..|++.|+++.
T Consensus 127 ~~~~~~~~~~~l~~~gL~~~~~~~~p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 127 AAERREKALAMMAKVGLRPEHYDRYPHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHHHHHHCCCChHHhcCCCcc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 344556789999999996 466777654 99999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 108 ~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+..|.|+|+..|. ...+.+.+|+|++|++|++++.|+.++..
T Consensus 202 ~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 202 QELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7668888876553 44556789999999999999999976553
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-19 Score=194.91 Aligned_cols=111 Identities=24% Similarity=0.324 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|..+++ |||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++..+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (243)
T TIGR02315 122 DKERALSALERVGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 (243)
T ss_pred HHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|++. .+.+.+|++++|.+|++++.|++++
T Consensus 197 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 197 ITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHH
Confidence 89998877665 5678899999999999999998653
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-19 Score=206.36 Aligned_cols=138 Identities=20% Similarity=0.324 Sum_probs=112.3
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh------hc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS------AE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~------~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
+.++.+|++||. ++.+.+.... .. ..+..++++++++.+||.+..|..+++ |||||||||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv 148 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRV 148 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHH
Confidence 445667887773 3444443211 01 233445789999999999999998865 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+||++|+.+|+||+|||||+|||+.+..++++.|+++++ .++|+|++.|. ..++.+.+|++++|++|++++.|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999986 58899998765 4467789999999999999999987643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=203.04 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=98.9
Q ss_pred chhhhHHHHHHHHhCCcc---cccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHH
Q 001048 30 LENSLQTDYILKILGLDI---CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~---~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~l 106 (1174)
.+..++++++|+.+||.+ ..|... +.|||||||||+||++|+.+|++|++||||||||..++.++++.|+++
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p-----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYP-----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 445567899999999975 345544 449999999999999999999999999999999999999999999999
Q ss_pred hHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 107 VHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 107 a~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
.+..|.|+|+..|... .+.+.+|+|++|.+|++++.|+.++..
T Consensus 200 ~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 200 QQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8767889998766544 566789999999999999999976553
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-19 Score=204.37 Aligned_cols=136 Identities=19% Similarity=0.173 Sum_probs=112.1
Q ss_pred hhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+++| .++.+.+.... ..+.+..++++++++.+||.+..|..+.+ |||||||||+||++|+
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALA 180 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHh
Confidence 34665554 46666554321 12234456789999999999988888865 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|+||+|||||+|||+.++..+++.|+++.+..++|+|++.|.+ .++.+++|+|++|.+|++++.|++++.
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999765688999887765 467889999999999999999987654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-19 Score=193.60 Aligned_cols=110 Identities=23% Similarity=0.375 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..+.++++++.+||++..|+.+++ |||||||||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 193 (236)
T cd03219 120 ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG 193 (236)
T ss_pred HHHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 345689999999999888888765 999999999999999999999999999999999999999999999876 58
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++
T Consensus 194 ~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 194 ITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHH
Confidence 89998877655 6778899999999999999998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-19 Score=196.77 Aligned_cols=112 Identities=27% Similarity=0.386 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g 188 (277)
T PRK13652 114 VAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG 188 (277)
T ss_pred HHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999988998865 999999999999999999999999999999999999999999999986558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|++. ++.+.+|++++|.+|++++.|++++.
T Consensus 189 ~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 189 MTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHH
Confidence 89998877655 67789999999999999999988665
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=190.62 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=100.8
Q ss_pred cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH
Q 001048 29 GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
++|..+++.++|+.+||.+... +-+.+...|||||||||.||.||..+|++|+.||||||||.....+|++.|+++.+
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4555667889999999997532 22335677999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 109 ITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 109 ~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+.|.++|+ |.|--.-+.+++|||+||..|++||.|+.++.
T Consensus 202 e~~~aiil-ITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 202 EKGTALIL-ITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred hcCCEEEE-EeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 77888776 44556668899999999999999999997643
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-19 Score=202.47 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=112.1
Q ss_pred hhhcCCCCC-------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCC
Q 001048 7 EKLAGIFPD-------PDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT 79 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P 79 (1174)
++..|+++| .++.+.+.... +.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGM--AKSMVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhh--hhhhHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCC
Confidence 445555544 45655554221 122345689999999999988988865 9999999999999999999
Q ss_pred cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 80 RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 80 ~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+|||||||||+.++..+++.|+++.+..++|+|++.|.+ .++.+++|++++|.+|+++..|++++..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999999876688998887766 4788999999999999999999886553
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-19 Score=189.71 Aligned_cols=107 Identities=24% Similarity=0.362 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|..+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999988998866 999999999999999999999999999999999999999999999987568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|+|++.|++. ++.+.+|+|++|.+|+++++|
T Consensus 182 ~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 182 TTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 89999888763 667889999999999999887
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-19 Score=190.23 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..+..+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+..+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~ 182 (220)
T cd03293 108 ARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182 (220)
T ss_pred HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 345689999999999888888865 999999999999999999999999999999999999999999999876568
Q ss_pred CEEEEEecCCChhHHhhhhheeeec--CCcEEEeCCcc
Q 001048 112 ATALISLLQPAPETFDLFDDVILMA--EGKIVYHGPLS 147 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~--~G~vvy~G~~~ 147 (1174)
+|+|++.|++. ++.+.+|++++|. +|++++.++++
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 183 KTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 89998877664 6678899999999 79999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-19 Score=202.02 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=111.3
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.++.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|+||+||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 344456776665321 12344556789999999999999998866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+++.+..++|+|+..|.+. ++.+++|+|++|.+|+++..|++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 192 FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999998766889998777654 67899999999999999999997654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=189.70 Aligned_cols=104 Identities=31% Similarity=0.608 Sum_probs=96.1
Q ss_pred HHHH-HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 35 QTDY-ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 35 ~v~~-vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
++++ +++.+++.+..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~t 195 (226)
T cd03234 122 RVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRI 195 (226)
T ss_pred HHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 4555 89999999888887765 999999999999999999999999999999999999999999999875 4789
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|++.|++..++.+.+|++++|.+|+++++|
T Consensus 196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999989999999999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-19 Score=191.59 Aligned_cols=136 Identities=22% Similarity=0.292 Sum_probs=110.3
Q ss_pred hhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
++..|++||. ++.+.+.... ....+..+.++++++.+||.+..|..+.+ |||||||||+||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 155 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARAL 155 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 5566766663 4444443211 11222345688999999999888887754 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|++ .++.+.+|++++|.+|++++.|+.++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999998875688999988865 46778899999999999999998654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-19 Score=218.95 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=113.0
Q ss_pred cchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
+..|+..+.+||+. +.+.+..... +.-.++++++.++..||. +..||.+|+. ++.||||||||++
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~ 490 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIA 490 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHH
Confidence 45678889999864 4455542211 112344678888888744 4569999984 4559999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+|+++|+||+||||||+||+.++..+.+.|+++. .++|+|+..|.+ ++.+.||+|++|++|++++.|++++..
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999875 367888766655 789999999999999999999987654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-19 Score=196.52 Aligned_cols=176 Identities=22% Similarity=0.292 Sum_probs=118.7
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccC-CCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQN-DIHSPNIT 675 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~-~~~~~~lT 675 (1174)
+.+.+|++-++++..|.-++|+|+||+|||||||+|+. |+|. +.+..+ ..+. -+++-. +.+..+ |
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~--~f~veq-E~~g--~~t~~~~~~l~~D-~ 156 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVS--GFHVEQ-EVRG--DDTEALQSVLESD-T 156 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcC--ccCchh-heec--cchHHHhhhhhcc-H
Confidence 45789999999999999999999999999999999985 2222 222111 0110 122211 122223 3
Q ss_pred HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSK-TKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
.++.+...- ..+... +..+...++|..+|...- .... .++||||=|-|+++||||..+|+||+|||||
T Consensus 157 ~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~p-----t~slSGGWrMrlaLARAlf~~pDlLLLDEPT 226 (582)
T KOG0062|consen 157 ERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQP-----TKSLSGGWRMRLALARALFAKPDLLLLDEPT 226 (582)
T ss_pred HHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhcc-----ccccCcchhhHHHHHHHHhcCCCEEeecCCc
Confidence 333332210 011111 334445558888887532 2222 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.||..+..-+.+.|+.+ +.|+|+++||-+ -+-+.+.++|-+.
T Consensus 227 NhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 227 NHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLE 269 (582)
T ss_pred ccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHh
Confidence 999999999988888765 489999999843 3445566666664
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-19 Score=191.40 Aligned_cols=134 Identities=20% Similarity=0.296 Sum_probs=109.8
Q ss_pred hhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|++||. ++.+.+.... ....+..++++++++.+||.+..++.+++ |||||||||+||++|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 149 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARALA 149 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 446776663 4445443211 11223345678999999999988888865 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|.+. ++.+.+|++++|.+|++++.|+.++
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHH
Confidence 99999999999999999999999999999875 5789988877655 8889999999999999999998654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=180.66 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=117.1
Q ss_pred CCCCCccHHHHHHHhhh----------------ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 11 GIFPDPDVDAYMKAISA----------------EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~~~----------------~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
-++|+.+|++.+..... ++.|-.++..++|+.+||.+.+|+..|+ ||+||+||+-||+|
T Consensus 89 rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArA 163 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARA 163 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHH
Confidence 35778888876554321 3455566789999999999999999998 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|.++|++|+||||.+||.+.-..++.+.++++.+..|.|+++ |-|-..-+..++|||+||+.|+++..|+++++.
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999766777776 678899999999999999999999999987554
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=195.15 Aligned_cols=137 Identities=21% Similarity=0.304 Sum_probs=109.6
Q ss_pred hhhhcCCCCCcc--------HHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDPD--------VDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~~--------v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|++||.. +.+.+... . ....+..++++++++.+||.+..|+.+++ ||||||||++||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~lar 149 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAG 149 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHH
Confidence 456678877742 22333221 1 11223345678899999999988888765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|+||+|||||+|||+.++..+.+.|+++++ .|+|+|++.|.+. .+.+.+|++++|.+|++++.|++++.
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999875 4789888776554 56688999999999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-19 Score=188.66 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=91.5
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 178 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKA 178 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 4689999999999988988865 999999999999999999999999999999999999999999999875 4889
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEE
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIV 141 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vv 141 (1174)
+|++.|.+. ++.+.+|++++|.+|++|
T Consensus 179 ii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 179 VIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 998877665 466789999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=201.78 Aligned_cols=137 Identities=23% Similarity=0.401 Sum_probs=112.0
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh--hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhc
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS--AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVG 77 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~--~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~ 77 (1174)
|+..|+++| .++.+.+.... ....+..++++++++.+||.+..|..+++ |||||||||+||++|+.
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLS 148 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 445565554 45655554211 11233345689999999999989988865 99999999999999999
Q ss_pred CCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 78 PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 78 ~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|++|+|||||+|||+.++..+++.|+++++..|+|+|++.|.+. ++.+++|+|++|.+|++++.|++++.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999998766889998877664 67788999999999999999987654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=187.94 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=106.1
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcC
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGP 78 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~ 78 (1174)
.++..+++||. ++.+.+...........++++++++.+||.+..|+.+++ |||||||||+||++|+.+
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGN 144 (208)
T ss_pred HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcC
Confidence 34556776663 444444332211111345688999999999988888765 999999999999999999
Q ss_pred CcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 79 TRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 79 P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++. .+.+.+|++++|.+|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999876 5889998877554 566789999999999999876
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-19 Score=223.21 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=112.6
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+..+ +.++.-.. ....++++.+.++..|+. +..||.||+ .+..||||||||+
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRi 620 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRI 620 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHH
Confidence 34678899999997554 44442211 112234567778877764 456999998 3456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+++|+||+||||||+||+.++..+++.|+++ .++|+|+..|. .++.+.+|+|++|++|++++.|++++.
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr--~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHR--LSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecc--hHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999974 36788875554 468899999999999999999999766
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 53
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=191.68 Aligned_cols=136 Identities=25% Similarity=0.312 Sum_probs=109.3
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-h---ccchhhhHHHHHHHHhCCcc--cccccccCCCcccCCccccchhHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-A---EGLENSLQTDYILKILGLDI--CADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-~---~~~e~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
++..|++|| .++.+.+.... . ...+..++++++++.+||.+ ..|+.+.+ |||||||||+||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~lar 148 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGVAR 148 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHHHH
Confidence 445666666 34545554321 1 12233456889999999996 66776654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|++. ++.+.+|+|++|.+|++++.|++++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999998655889998888764 6678899999999999999998654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=194.33 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=99.5
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.+.++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~ 195 (265)
T PRK10253 121 EEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195 (265)
T ss_pred HHHHHHHHHHcCCHHHhcCCccc-----CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34678999999999888888765 9999999999999999999999999999999999999999999999865578
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+|++.|++. ++.+.+|++++|.+|++++.|++++.
T Consensus 196 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 196 TLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8988776555 78899999999999999999987543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=189.42 Aligned_cols=134 Identities=22% Similarity=0.351 Sum_probs=108.3
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
++..|+++| .++.+.+.... ....+..++++++++.+||.+..++.+++ ||||||||++||++|
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 148 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIAL 148 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHHH
Confidence 445666655 34545544221 11223345688999999999988988865 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++. .+.+.+|++++|.+|++++.|++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999874 478888877665 5667899999999999999998653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=198.23 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=99.1
Q ss_pred cchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHh
Q 001048 29 GLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la 107 (1174)
+.+..++++++|+.+||. +..|+..++ |||||||||+||++|+.+|++|++||||||||..++.++++.|+++.
T Consensus 134 ~~~~~~~~~~~l~~vgl~~~~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 134 RQEVKDRVKAMMLKVGLLPNLINRYPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred HHHHHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 344566788999999994 566776654 99999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 108 ~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+..|.|+|+..|. ...+.+.+|+|++|.+|++++.|+.++.
T Consensus 209 ~~~~~til~iTHd-l~~~~~~~dri~vl~~G~ive~g~~~~i 249 (331)
T PRK15079 209 REMGLSLIFIAHD-LAVVKHISDRVLVMYLGHAVELGTYDEV 249 (331)
T ss_pred HHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 7668888886653 4466678999999999999999987654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-19 Score=197.71 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=98.1
Q ss_pred hhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+
T Consensus 127 ~~~~~~ll~~~~L~~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 201 (289)
T PRK13645 127 YKKVPELLKLVQLPEDYVKRSPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201 (289)
T ss_pred HHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 34678899999994 677777755 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++.
T Consensus 202 ~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 202 KRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89998877655 67789999999999999999987544
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=197.65 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=99.2
Q ss_pred chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHh
Q 001048 30 LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~ 109 (1174)
.+..+++.++|+.+||.+..++ .+ .+.+.|||||||||+||++|+.+|++|++||||||||..++..+++.|+++.+.
T Consensus 133 ~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 133 AEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred HHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3444578899999999864332 22 244669999999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 110 ~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
.|.|+|+..|... .+.+.+|+|++|++|++++.|+.++..
T Consensus 211 ~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 211 FNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6889998766554 566789999999999999999976553
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=189.55 Aligned_cols=111 Identities=19% Similarity=0.361 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|+.+++ ||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++..|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999989998865 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|++. ++.+.+|++++|.+|++++.|+.++
T Consensus 181 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 181 LTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 89998877655 6678899999999999999998653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=193.57 Aligned_cols=137 Identities=25% Similarity=0.282 Sum_probs=111.1
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+++..|++||+ ++.+.+.... ..+.+..+++.++++.+||++..|+.+++ ||||||||++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~lar 150 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAG 150 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 45667777775 2333333111 11223345688999999999988998866 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999976 488999887754 366678999999999999999998764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=193.01 Aligned_cols=111 Identities=24% Similarity=0.295 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
..+++++++.+||.+..|..+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..|+
T Consensus 121 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 121 HSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 34678899999999989998866 9999999999999999999999999999999999999999999999765578
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 196 tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 196 TCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999887754 467788999999999999999987543
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=187.76 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=134.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECCeeCCcccccceEEEEccCC-CC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIEGDIRIGGYPKVQHTFARISGYCEQND-IH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~------~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~-~~ 670 (1174)
...+|+|+|++++||++++|+|+|||||||+|++|.|... +.|.+|.|.+--.. ..+.+|-+. .-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 4579999999999999999999999999999999999432 23667877663211 223444332 22
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
+..-|+.|++.- ...+ .....+++...|+.+..-.. ...+.||-|||.|..||.++...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 335577776531 1111 12245788888887542111 123579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHh--cceeEEecC
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF--DDLVLMKNG 802 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~--d~~~~l~~~ 802 (1174)
|-.|.||+.++..+.+-|.+++++ |.|++++||+| ++.++. |.++++..|
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrp--Ev~~AL~PD~li~vgYg 585 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYG 585 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHhccCCceeEEeecc
Confidence 999999999999999999999865 99999999987 456655 777777653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=189.17 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..+.++++++.+||.+..|+.+++ ||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++..|
T Consensus 109 ~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 109 ARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345688999999999888888865 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+..- ..+|++++|.+|++++.|++++.
T Consensus 184 ~tiii~sH~~~~~--~~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 184 LSVLWATHLVDEI--EADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred CEEEEEecChhhH--hhCCEEEEEeCCeEEEeCCHHHH
Confidence 8999888877654 35999999999999999987543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=175.01 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 726 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||||||||++|||+++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999999987789999999986 45678999998876
Q ss_pred Cc
Q 001048 802 GG 803 (1174)
Q Consensus 802 ~G 803 (1174)
.|
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 43
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=192.84 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..|
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~ 193 (269)
T PRK13648 119 MHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193 (269)
T ss_pred HHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH---HHHHhhCCCCCC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS---CKFFEGCGFRCP 161 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~---~~yf~~~G~~~p 161 (1174)
+|+|++.|++.. +. .+|+|++|++|++++.|++++. ...+..+|+++|
T Consensus 194 ~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 194 ITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred CEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 899998888754 44 4999999999999999987654 234444555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1174 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-07 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 9e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-06 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 6e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 8e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1174 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-04 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-23 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-23 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-23 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-14 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-17 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-04 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-15 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-13 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-12 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-11 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 6e-11 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-10 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-10 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 7e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-09 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-08 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 7e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-07 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-07 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-06 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-05 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 18/212 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 658
L I+ G + L+G +GAGKTT + ++S + + G + + G V+
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 659 -RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
++ Y + N+ E + F A S E V + L
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
V S ++L IA L+ NP + +DEPTSGLD A V + +K + G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ + H ++ E D + + + G I+ G
Sbjct: 199 ILVSSH--NMLEVEFLCDRIALIHNGTIVETG 228
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 34/218 (15%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 658
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 659 RISGYCEQNDIHSPNITVEESIVF-----SAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ G+ Q +V + ++ D + + L + L +
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTHL 121
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV- 772
LS QR+ + IA + + +I +DEPTS LD V+ + ++
Sbjct: 122 AKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
TVV T HQP+ + + +L+ FG
Sbjct: 177 SQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 18/132 (13%)
Query: 20 AYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI---- 75
++ + + L L L A +SGGQ++ + LI
Sbjct: 93 THINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAI 143
Query: 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL--LQPAPETFDLFDDVI 133
+ + +DE ++ LD + ++S L L + T + + + + +
Sbjct: 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV---VAIANKTL 200
Query: 134 LMAEGKIVYHGP 145
L+ + +
Sbjct: 201 LLNKQNFKFGET 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 34/224 (15%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--- 656
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATK 70
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
A Y Q V + KT+ E +N+V + LD
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGR 122
Query: 717 LVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 123 ST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 770 NVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
+ + G +V + H D+ L+K GG+++ G
Sbjct: 178 ALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 4e-23
Identities = 52/280 (18%), Positives = 109/280 (38%), Gaps = 49/280 (17%)
Query: 552 GPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRP 611
G + + L + + + K G +L I+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHML-IQLDQIGR--------MKQGK-----TILKKISWQIAK 46
Query: 612 GILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYP--KVQHTFARIS---GYC 664
G L G++GAGKTTL+++L+ T G + + G KV ++ + G+
Sbjct: 47 GDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHIGFV 102
Query: 665 EQNDIH---SPNITVEESIVFSA------WLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
+ V + +V S + + +A ++L+ + +
Sbjct: 103 SH-SLLEKFQEGERVID-VVISGAFKSIGVYQDIDDEI-RNEAH---QLLKLVGMSAKAQ 156
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
+G LST +++R+ IA L+ P ++ +DEP +GLD A +++ + ++ ++
Sbjct: 157 QYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 776 R--TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
++ H +I F ++L+K+ G+ I G +
Sbjct: 212 PTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVED 249
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 31/142 (21%)
Query: 11 GIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70
G++ D D + +A +LK++G+ A +G +S G+K+R+
Sbjct: 129 GVYQDIDDEIRNEA------------HQLLKLVGMSAKAQQYIGY-----LSTGEKQRV- 170
Query: 71 TGELIVGPTRA-------LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAP 123
+I RA L +DE + GLD ++S L L A+I +
Sbjct: 171 ---MIA---RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224
Query: 124 ETFDLFDDVILMAEGKIVYHGP 145
E F ++L+ +G+ + G
Sbjct: 225 EITANFSKILLLKDGQSIQQGA 246
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-23
Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 25/208 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L IT T G + G +G GKTTL+ +S + +G+I G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGK 79
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
I + + I I+VE+ + A L K + + L+++E+ +K
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTV 778
+ LS +R+ +A L+ N I +D+P +D + V++++ ++ E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGGRII 806
+ + D + I
Sbjct: 188 ISSRE-----ELSYCDVNENLHKYSTKI 210
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 6e-22
Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 33/207 (15%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRIGGYPKVQHTFARISGYCEQN- 667
G ++G +G+GKTTL+ R G++ G+I I G Y
Sbjct: 29 NGEKVIILGPNGSGKTTLL-----RAISGLLPYSGNIFING--MEVRKIRNYIRYSTNLP 81
Query: 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNGL 726
+ + +TV + + L+ + E+L+ ++L + I + L
Sbjct: 82 EAYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKL-----YKL 129
Query: 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786
S Q + ++ L + P I+ +DEP +DA + R +K E G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 787 IDIFEAF---DDLVLMKNGGRIIYFGP 810
++ + G R+
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 49/288 (17%), Positives = 94/288 (32%), Gaps = 32/288 (11%)
Query: 527 LQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIP 586
+ G + + L R L F T EDL+
Sbjct: 294 IYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADAT-EDLQNDSASR 352
Query: 587 SAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGD 644
+ + +L+ G F + +MG +G GKTTL+ +L+G + G
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK 412
Query: 645 IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEV 704
+ + K Q + G TV + L +F +V
Sbjct: 413 LNVS--MKPQKIAPKFPG------------TVRQ-------LFFKKIRGQFLNPQFQTDV 451
Query: 705 LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
++ + +D I D V LS + +R+ I + L I +DEP++ LD+
Sbjct: 452 VKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 765 MRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNG-GRIIYFGP 810
+ ++ + +T H + D +++ + + +
Sbjct: 507 SKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARA 553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 44/260 (16%)
Query: 568 PFEPLTVTFEDLRYYVDIPSAMRKN-----GFNQTRLQLLSDITGTFRPGILTALMGVSG 622
PF+ + + +++P+ + + N +L L RPG + L+G +G
Sbjct: 66 PFDAIQI--------INLPTNLEAHVTHRYSANSFKLHRLPTP----RPGQVLGLVGTNG 113
Query: 623 AGKTTLMDVLSG--RKTGGIIEG---DIRIGGYPKVQHTFARISGYCEQNDIHSPNI--- 674
GK+T + +L+G + G + I Y + + E +
Sbjct: 114 IGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYV 173
Query: 675 -----TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729
++ + L ++ + E V ++ ++L+ + + LS
Sbjct: 174 DNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR-----DIEKLSGG 225
Query: 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDI 789
+ +R I + V + DEP+S LD + + +++++ + V+C H D+
Sbjct: 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH----DL 281
Query: 790 FEAFD--DLVLMKNGGRIIY 807
D V + G +Y
Sbjct: 282 SVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 17/143 (11%)
Query: 5 KLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGG 64
K +K+A FP + K I + L QTD ++K L +D D V +SGG
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEVQH-----LSGG 471
Query: 65 QKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI-----SLL 119
+ +R+ + P +DE S LDS ++ + TA I +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531
Query: 120 QPAPETFDLFDDVILMAEGKIVY 142
L D VI+
Sbjct: 532 T------YLADKVIVFEGIPSKN 548
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 40/224 (17%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFA 658
L +++ G + G +G+GK+TL+ +++G +I GD+ G K +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 659 RISGYCEQNDIHSP-----NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
R G Q P V + + F+ + + V + ++
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFA----VKNFYPDRDPVPLVKKAME------- 122
Query: 714 KDSLVGLPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
VGL + LS +++R+ IA +V P I+ +DEP GLD ++R
Sbjct: 123 ---FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179
Query: 767 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
V+ G+TV+ H + D +V+++ G+ ++ G
Sbjct: 180 IVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 35/227 (15%)
Query: 557 ERPLAHRKMILPFEPLTVTFEDLRYY-VDIPSAMRKNGFNQTRLQLLSDITGTFRPGILT 615
+ + R + F L+ + R V+ P ++ G L G R G +
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS-----FKLEVEPGEIRKGEVI 385
Query: 616 ALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPN 673
++G +G GKTT + +L+G T G +E D+ + P+ I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------YIK--------AEYE 431
Query: 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733
TV E + + E+L+ + + + D V LS + +R
Sbjct: 432 GTVYELL-------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQR 479
Query: 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVV 779
+ IA L+ + I +DEP++ LD V RA+++++E +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 27/221 (12%)
Query: 568 PFEPLTVTFEDLRYYVDIPSAMRKN---GFNQTRLQLLSDITGTFRPGILTALMGVSGAG 624
PF +++ V++P + ++ + L + G++ ++G +G G
Sbjct: 80 PFNAISI--------VNLPEQLDEDCVHRYGVNAFVL--YRLPIVKDGMVVGIVGPNGTG 129
Query: 625 KTTLMDVLSGR----KTGGIIEGDIRIGGYP--KVQHTFARISGYCEQNDIHSPNITVEE 678
KTT + +L+G+ D I + ++Q+ F R+ + + + +
Sbjct: 130 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 189
Query: 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738
V ++ + + EV++ +EL+ + D + LS + +R+ IA
Sbjct: 190 KAVKG---KVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAA 241
Query: 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
L+ F DEP+S LD R V R ++ + G+ V+
Sbjct: 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 12 IFPDPD--VDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69
I + + V + I + L ++ +LK LG+ D V D +SGG+ +R+
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRV 480
Query: 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPE 124
++ +DE S LD + ++HL+ + TAL+ ++
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID---- 536
Query: 125 TFDLFDDVILMAEGKIVYHG 144
+ D +I+ EG+ HG
Sbjct: 537 --YVSDRLIVF-EGEPGRHG 553
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 33/226 (14%)
Query: 557 ERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTA 616
+ + R + F E R + + K+ + L G + G +
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFR----LEVEPGEIKKGEVIG 316
Query: 617 LMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674
++G +G GKTT + +L+G T G IE D+ + P+ I
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQ------YIK--------ADYEG 362
Query: 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL 734
TV E + + E+L+ + + + D V N LS + +R+
Sbjct: 363 TVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRV 410
Query: 735 TIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVV 779
IA L+ + I +DEP++ LD V RA+++++E +T +
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 36/189 (19%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGR----KTGGIIEGDIRIGGYP--KVQHTFARIS 661
+ G++ ++G +G GK+T + +L+G+ G D I + ++Q+ F ++
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQ---IDSKTKAEFVNEVLQTIELDGIKDSLV 718
+I V Q + K V E+L+ + G + +V
Sbjct: 103 N----GEI---------RPVV------KPQYVDLIPKAVKGKVIELLKKADETGKLEEVV 143
Query: 719 GLPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
+ LS + +R+ IA L+ N + F DEP+S LD R RA++
Sbjct: 144 KALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 771 VVETGRTVV 779
+ E G++V+
Sbjct: 204 LSEEGKSVL 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 8e-18
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 558 RPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTAL 617
RP + M+ L ++ + ++K G Q L G + G + +
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKM-KWTKIIKKLGDFQ-----LVVDNGEAKEGEIIGI 299
Query: 618 MGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675
+G +G GKTT +L G G + + +I Y K Q F + + T
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP------------NYDGT 346
Query: 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLT 735
V++ +L +++ T + F EV + + L + +S V N LS + ++L
Sbjct: 347 VQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLY 395
Query: 736 IAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
IA L + +D+P+S LD V +A+K V + V I
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 62/316 (19%), Positives = 117/316 (37%), Gaps = 50/316 (15%)
Query: 591 KNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650
NGF L T + + ++G +G GKTT++ +L+G II
Sbjct: 11 VNGFKLFGLP-------TPKNNTILGVLGKNGVGKTTVLKILAGE----IIPNFGDPNSK 59
Query: 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI---DSKTKAEF--VNEVL 705
R G +I+ N E ++S L++ +I + +K VNE+L
Sbjct: 60 VGKDEVLKRFRG----KEIY--NYFKE---LYSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 706 QTIELDGIKDSLVGLPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
I+ G KD + L + LS +RL +A L+ + D+P+S LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIF---EAFDDLVLMKNGGRIIYFGPLGQH 814
R + +A++ +++ + V+ H D+ D + ++ G +G
Sbjct: 171 VRERMNMAKAIRELLK-NKYVIVVDH----DLIVLDYLTDLIHIIY--GESSVYG----- 218
Query: 815 SCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELV 874
+V + + G+ Y PA M V + ++ + +++
Sbjct: 219 --RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII 276
Query: 875 KQLSSPSLGSKDLHFP 890
K+L L +
Sbjct: 277 KKLGDFQLVVDNGEAK 292
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 12 IFPDPD--VDAYMKAISAEGLENSLQ-TDYILKILGLDICADTMVGDPMRRGVSGGQKKR 68
IFP+ D V Y++ S + L S + + K L L ++ V D +SGG+ ++
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQK 393
Query: 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL 128
L + +D+ S+ LD + + +K + A I DL
Sbjct: 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDL 446
Query: 129 F------DDVILMAEGKIVYHGPLSYSCKFFEGC 156
D +I+ +G+ G + G
Sbjct: 447 SIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGM 479
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYP--KVQHT 656
L I + G +TA++G +G GK+TL +G I+ G I P +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-----ILKPSSGRILFDNKPIDYSRKG 78
Query: 657 FARIS---GYCEQNDIHSPN-----ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
++ G Q+ P+ +V + + F A ++ ++ + V+ L+
Sbjct: 79 IMKLRESIGIVFQD----PDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALKRT 131
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
++ +KD + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 769 KNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ E G T++ H + D++ +M GR+I G
Sbjct: 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVM-KEGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 62 SGGQKKRLT-TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS--- 117
S GQKKR+ G L++ P + L +DE + GLD +I+ L + T +I+
Sbjct: 145 SFGQKKRVAIAGVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 118 LLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ D+V +M EG+++ G
Sbjct: 204 I----DIVPLYCDNVFVMKEGRVILQGN 227
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 5e-15
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYP--KV 653
+ L ++ + G +T ++G +G+GK+TL++V++G + G + + I ++
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 654 QH-----TFARISGYCEQNDIHS-PNITVEE-----------SIVFSAWLRLSTQIDSKT 696
H TF Q +TV E S + S + + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 697 KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756
+ ++L+ ++L + D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 757 DARAAATVMRAVKNVVETGRTVV 779
A + V + G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGG 649
Q+L DI+ +P + A G SG GK+T+ +G I I G
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDG 63
Query: 650 YP--KVQHTFARIS-GYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVL 705
P + R G+ Q D T+ E++ + + + F +
Sbjct: 64 QPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+ + D + ++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + + V
Sbjct: 123 ENMP-DQL-NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 766 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
+A+ ++++ GRT + H+ S I +A D + G+I
Sbjct: 180 KALDSLMK-GRTTLVIAHRLST-IVDA--DKIYFIEKGQIT 216
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 69/303 (22%), Positives = 124/303 (40%), Gaps = 67/303 (22%)
Query: 516 RTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMILPFEPLTVT 575
I E +L ++ V D P ++G +
Sbjct: 20 HMFIDMENMFDLLKEETEV--------KDLPGAGPLRFQKGR----------------IE 55
Query: 576 FEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM------ 629
FE++ + + R + L D++ T PG AL+G SGAGK+T++
Sbjct: 56 FENVHF-----------SYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103
Query: 630 -DVLSGRKTGGIIEG-DIRIGGYPKV-QHTFARISGYCEQNDIHSPNITVEESIVFSAWL 686
D+ SG I+G DI +V Q + G Q D N T+ ++I +
Sbjct: 104 YDISSGCIR---IDGQDIS-----QVTQASLRSHIGVVPQ-DTVLFNDTIADNIRYG--- 151
Query: 687 RLS---TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743
R++ ++++ +A +++ + +G + VG G+ LS +++R+ IA ++
Sbjct: 152 RVTAGNDEVEAAAQAAGIHDAIMAFP-EGY-RTQVGERGLK-LSGGEKQRVAIARTILKA 208
Query: 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803
P II +DE TS LD + ++ V RT + H+ S + A D +L+ G
Sbjct: 209 PGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VVNA--DQILVIKDG 264
Query: 804 RII 806
I+
Sbjct: 265 CIV 267
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 33/224 (14%)
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGG--IIEGDIRIGGYP 651
+ L ++ + G ++MG SG+GK+T+++++ G + T G I+ I+
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDN-IKTNDLD 73
Query: 652 KVQHTFAR---ISGYCEQ--NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
+ T R I G+ Q N I P +T E++ + + + + + E L+
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 707 TIELDGIKDSLVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVM 765
+++ P N LS Q++R+ IA L NP II D+PT LD++ +M
Sbjct: 131 MA---ELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 766 RAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808
+ +K + E G+TVV H ++ + G RIIY
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINV-----------ARFGERIIYL 218
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 2e-12
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQ 654
++L I+ + + G +++G SG+GK+TL+ +L T G +EG + + +
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 655 HTFAR---ISGYCEQ--NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
+ R + G+ Q I P +T E+++ + ++K + E +L +
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGE---YLLSEL- 128
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
G+ D L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 129 --GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 770 NVVETGRTVVCTIHQPSI 787
+ E G ++V H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 72/454 (15%), Positives = 149/454 (32%), Gaps = 118/454 (25%)
Query: 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTT 627
F V+ R + + R LL RP + GV G+GKT
Sbjct: 125 VFAKYNVS--------------RLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTW 165
Query: 628 L-MDVLSGRKTGGIIEGDI---RIGGYPK-------VQHTFARISG-YCEQNDIHSPNIT 675
+ +DV K ++ I + +Q +I + ++D HS NI
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIK 224
Query: 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG----LSTEQR 731
+ S L + SK + N +L + L ++++ N L T +
Sbjct: 225 LRIH---SIQAELRRLLKSK---PYENCLL--V-LLNVQNAKA-WNAFNLSCKILLTTRF 274
Query: 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIF 790
K++T + A + I +D + L +++ + + V T + + I
Sbjct: 275 KQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 791 EAFDDLVLMKNG-GRIIYFGPLG--------QHSCKVIE-------YFEC--------IP 826
+++G + + + S V+E + IP
Sbjct: 334 AE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 827 -GVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKE-------LVKQLS 878
+L + W + S+ M ++++ S + ++ KE + +L
Sbjct: 389 TILLSL-------IWFDVIKSDVMV-----VVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 879 SPSLGSKDLH--------FPTHFPQNGWEQFKACMWKHNLSYWRN-PSYNLIRIVFTCAM 929
LH P F + + + Y+ + ++L I
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLKNIEHP-ER 489
Query: 930 SLLFGILF----WQKGKKIKNQQDVFNILGALFS 959
LF ++F + + +KI++ +N G++ +
Sbjct: 490 MTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILN 522
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 6e-06
Identities = 85/629 (13%), Positives = 162/629 (25%), Gaps = 235/629 (37%)
Query: 2 EVIKLEKLAGIF--PDPDVDAYM---------KAISAEGLENSLQTDYILKILGLDICAD 50
++ E++ I D + + + +E L+ +Y K L I +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE 101
Query: 51 TMVGDP-MRRGVSGGQKKRLTTGELIVGP---TRALFMDEISNGLDSSTTFQIVSFLKHL 106
P M + Q+ RL + +R ++ L
Sbjct: 102 QR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE------------- 146
Query: 107 VHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGV 166
L+PA ++ G L G G K
Sbjct: 147 ------------LRPAK---------------NVLIDGVL--------GSG------KTW 165
Query: 167 --ADFLQ--EVISRKDQAQYW----HCQDHPYSYVSVDQFITKFKACHLGLMQD-EELAR 217
D +V + D +W +C S + + + + + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCN-------SPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 218 SFNKSERHKNAISFKKYSLTKWELLKTCATREFLLMKRN----SSLYVF--KSTQLVIIA 271
+ + ++I + L K + + C LL+ N + F L+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKILLT-- 271
Query: 272 SVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGF-PEMNMTISRLAVFYKHRDLCF 330
T R + D + A + + P+ ++ + + +DL
Sbjct: 272 --T-----RFKQVTDFLSAATT----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318
Query: 331 YPAWAYAIPASILKV-PLSLLESFVWTSL-------TYYIIGFSPEVGRFIRQFLLFFAV 382
P +L P L S + S+ + ++ I L
Sbjct: 319 --------PREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN---- 364
Query: 383 HLTSI---SLFRAIASIFR-TVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVC 438
L +F ++ +F + + +L L+ W +
Sbjct: 365 VLEPAEYRKMFDRLS-VFPPSAHI-----PTILLSLI--------------WFD------ 398
Query: 439 PLTYGEIGLTVNEF----LAPRWEK--VIS--------GNTTAGMQTLESRGLN------ 478
+ ++ + VN+ L + K IS L ++
Sbjct: 399 -VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 479 -----------FDSSFYWISIGALIGFTM----------LFNAVFTLALTFLKPPGKSR- 516
D FY IG + LF VF L FL+ K R
Sbjct: 458 TFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVF-LDFRFLE--QKIRH 509
Query: 517 ----------------TLISYEKYLELQD 529
L Y+ Y+ D
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 76/528 (14%), Positives = 146/528 (27%), Gaps = 180/528 (34%)
Query: 462 SGNTTAGMQTLESRGL--NFDSSFYWISIG------ALIGFTMLFNAVFTLALTFLKPPG 513
SG T + S + D +W+++ ++ ML ++ + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSD 218
Query: 514 KS--------------RTLISYEKY----LELQDQKD----------C---VGSDRDRSP 542
S R L+ + Y L L + ++ C + + R +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQV 277
Query: 543 TDAPLKAATGPKRGERPLAHRKMILPFEP----------LTVTFEDLRYYVDIPSAMRKN 592
TD + L H M P L +DL P +
Sbjct: 278 TD----FLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDL------PREVLT- 324
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652
T + LS I + R G+ T V + T IIE + + +
Sbjct: 325 ----TNPRRLSIIAESIRDGLATW---------DNWKHVNCDKLT-TIIESSLNVLEPAE 370
Query: 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
+ F R+S + P+ + ++ W + + L +E
Sbjct: 371 YRKMFDRLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQP 421
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772
K+S + +P I+++ + A
Sbjct: 422 -KESTISIPS------------------------IYLELKVKLENEYA------------ 444
Query: 773 ETGRTVVCTIHQPSID---IFEAFD--DLVLMKNGGRIIYFGPLGQH--SCKVIEYFECI 825
+H+ +D I + FD DL+ +G H + + E
Sbjct: 445 ---------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLF 493
Query: 826 PGV------LKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLY-QENKELVKQLS 878
V L+ K ++ W S + QL + Y+ Y +N ++L
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-----KFYKP---YICDNDPKYERL- 544
Query: 879 SPSLGSKDL-HFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVF 925
+ F + K + + +L+RI
Sbjct: 545 -----VNAILDF---------------LPKIEENLICSKYTDLLRIAL 572
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 51/224 (22%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L DI G L A+ G +GAGKT+L+ ++ G + EG I+ G R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 660 ISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
IS +C Q + T++E+I+ ++ V++ +L+ +D
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLE--ED- 141
Query: 717 LVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ G+ LS QR R+++A + + + +D P LD +
Sbjct: 142 ISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 767 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ + +T + + ++ + D ++++ G ++G
Sbjct: 201 SCVCKLMANKTRILVTSK--MEHLKKADKILILHE-GSSYFYGT 241
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 2e-11
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGYPKVQHTFA 658
LL+ + + G +G GK+TLM ++ + G + + R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 659 RISGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
Y E + D + +V + + S E + + L IE G D +
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKL--IEF-GFTDEM 541
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
+ +P ++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
G+ +V + GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-11
Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 39/226 (17%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE-------GDIRIGGYP- 651
Q+L + + G AL+G SG GK+T + +++ G + I G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQDI 454
Query: 652 ---KVQHTFARISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
V++ I G Q P T+ E+I + T + + + N
Sbjct: 455 RTINVRYLREII-GVVSQE----PVLFATTIAENIRYG--REDVTMDEIEKAVKEAN-AY 506
Query: 706 QTIEL--DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
I D+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A
Sbjct: 507 DFIMKLPHQF-DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V A+ E GRT + H+ S + A D + G I+ G
Sbjct: 565 VQAALDKARE-GRTTIVIAHRLST-VRNA-DVIAGFDG-GVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 37/223 (16%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 651
+L ++ + G AL+G SG GK+T++ D ++G + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 652 ---KVQHTFARISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705
VQ A++ G Q P + ++ E+I + R+ + + A+ N +
Sbjct: 1098 KQLNVQWLRAQL-GIVSQE----PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IH 1151
Query: 706 QTIE-L-DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
Q I+ L D ++ VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1152 QFIDSLPDKY-NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209
Query: 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
V A+ E GRT + H+ S I A D +V+++N G++
Sbjct: 1210 VQEALDKARE-GRTCIVIAHRLST-IQNA-DLIVVIQN-GKVK 1248
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 52/225 (23%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L+ IT + G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 660 ISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
++ Y Q N ++ E+I+F + + + V+Q L D
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALL--PD- 109
Query: 717 LVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
L LP GVN LS Q++R+++A + +N I D+P S +DA +
Sbjct: 110 LEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 767 AV--KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V + +T + H + D +++M G+I G
Sbjct: 169 NVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSG-GKISEMG 210
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 48/222 (21%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L DI G L A+ G +GAGKT+L+ ++ G + EG I+ G R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 660 ISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD- 715
IS +C Q T++E+I+F V++ +L+ +D
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLE--EDI 113
Query: 716 --------SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 114 SKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ +T + + ++ + D ++++ G ++G
Sbjct: 173 CVCKLMANKTRILVTSK--MEHLKKADKILILHE-GSSYFYG 211
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 58/234 (24%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 651
Q+L +T T PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 652 -KVQHTFAR--ISGYCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAE------ 699
+ H + + Q P + E+I + + T E
Sbjct: 84 VQYDHHYLHTQV-AAVGQE----PLLFGRSFRENIAYGL-------TRTPTMEEITAVAM 131
Query: 700 ------FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753
F++ G D+ VG G LS QR+ + +A L+ P ++ +D T
Sbjct: 132 ESGAHDFISG-FP----QGY-DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNAT 184
Query: 754 SGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
S LDA V R + E RTV+ Q S+ A ++ +K G +
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AERA-HHILFLKE-GSVC 235
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 651
+ L I G AL+G +G+GK+T+ D EGDI+IGG
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNV 83
Query: 652 -KV-QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
K +++ I G Q D N T++ +I++ ++ TK+ + + ++ +
Sbjct: 84 NKYNRNSIRSIIGIVPQ-DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALP 142
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
D++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +AV+
Sbjct: 143 -KKW-DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE 199
Query: 770 NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
++ + RT++ H+ S I A + ++L+ G+I+
Sbjct: 200 DLRK-NRTLIIIAHRLST-ISSA-ESIILLNK-GKIV 232
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 96/272 (35%)
Query: 574 VTFEDL--RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM-- 629
+TF ++ RY D P +L +I + + G + ++G SG+GK+TL
Sbjct: 8 ITFRNIRFRYKPDSP-------------VILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 630 -----DVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA 684
+G+ + I G+ D+ +
Sbjct: 55 IQRFYIPENGQ---------VLIDGH-----------------DLALADP---------N 79
Query: 685 WLRLSTQID---------SKTKAEFVN-----------EVLQTIELDGIKDSLVGLP--- 721
WLR Q+ +++ + N +V+ +L G D + L
Sbjct: 80 WLR--RQVGVVLQDNVLLNRSIID--NISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 722 -------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
G LS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 136 NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 193
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806
GRTV+ H+ S + A D +++ G+I+
Sbjct: 194 GRTVIIIAHRLST-VKNA--DRIIVMEKGKIV 222
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-10
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 29/189 (15%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPKVQ 654
LS ++ + G AL+G SG+GK+T+ DV SG I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLDGHD--V 407
Query: 655 HTFARIS-----GYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTI 708
+ + Q ++H N T+ +I ++A + QI+ + E ++ +
Sbjct: 408 RDYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
G+ D+++G G + LS QR+R+ IA L+ + ++ +DE TS LD + + A+
Sbjct: 467 P-QGL-DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 769 KNVVETGRT 777
+ + +T
Sbjct: 524 DELQK-NKT 531
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 616 ALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--FARISGYCEQNDIHSPN 673
L+G +GAGK+ +++++G G++R+ G + R G+ Q+ P+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGAD-ITPLPPERRGIGFVPQDYALFPH 84
Query: 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733
++V +I + LR ++ + V E+ + + + + D LS +R+R
Sbjct: 85 LSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQR 134
Query: 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEA 792
+ +A LV P ++ +DEP S +D + +M ++ V E ++ H D+ EA
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH----DLIEA 190
Query: 793 F---DDLVLMKNGGRIIYFGP 810
D++ +M GRI+ G
Sbjct: 191 AMLADEVAVM-LNGRIVEKGK 210
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 7e-10
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPKVQ 654
L +I G AL+G SG+GK+T+ D+ G I + G+ +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 655 HTFA---RISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIEL 710
+T A Q ++H N TV +I ++ S QI+ + + + + ++
Sbjct: 410 YTLASLRNQVALVSQ-NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD- 467
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
+G+ D+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+
Sbjct: 468 NGL-DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525
Query: 771 VVETGRT 777
+ + RT
Sbjct: 526 LQK-NRT 531
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 62/241 (25%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 659
L+DI+ + PG + ++G SG GKTTL+ L+G + G+I + G
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KT 67
Query: 660 ISGYC-----EQNDIHS--------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
I + + P++TV +I + L + + + + + +L
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNG-KGRTAQERQRIEAML- 123
Query: 707 TIELDGIKDSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
L G+ + G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 124 ---------ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 762 ATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRI--------IYFG 809
+ + + G++ V H D EA D + +M GRI +Y
Sbjct: 175 RQIREDMIAALRANGKSAVFVSH----DREEALQYADRIAVM-KQGRILQTASPHELYRQ 229
Query: 810 P 810
P
Sbjct: 230 P 230
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653
F + ++ L ++ G ++G SGAGKTT M +++G G++ ++
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDD--RL 68
Query: 654 QHTFARISGYCEQNDIHS--------PNITVEESIVFSAWLRLS----TQIDSKTKAEFV 701
+ ++ E I PN+T E+I F L +I + V
Sbjct: 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-----V 121
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 759
EV + +++ + + P LS Q++R+ +A LV +PS++ +DEP S LDA R
Sbjct: 122 EEVAKILDIHHVLNHF---PR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 760 AAATVMRA-VKNV-VETGRTVVCTIHQPSIDIFEAF---DDLVLMKNG 802
+ RA VK V G T++ H D + F D + ++ G
Sbjct: 177 DS---ARALVKEVQSRLGVTLLVVSH----DPADIFAIADRVGVLVKG 217
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARI 660
+ ++ R G + L+G SG+GKTT++ +++G + +GD+ IGG R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRN 88
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRL----STQIDSKTKAEFVNEVLQTIELDGIKDS 716
G QN ++TV +++ F LR ++D++ V E+L+ + L+ +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELLRFMRLESYANR 141
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 142 FP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 29/224 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQHTFA 658
L++++ G + ++G SGAGK+TL+ ++ R T G ++ + + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 659 RIS-GYCEQ--NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
R G Q N + S TV ++ L L V E+L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDEVKRRVTELLS--------- 149
Query: 716 SLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
LVGL + LS Q++R+ IA L +NP ++ D+ TS LD +++ +K+
Sbjct: 150 -LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 771 V-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
+ G T++ H+ + + D + ++ N G +I + +
Sbjct: 209 INRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQDTVSE 250
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGR-KTGGIIEGDIRIGGYPKV 653
LS + + +PG L A++G +G+GK+TLM D GR + + D+R
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL---DVR--TVK-- 411
Query: 654 QHTFARISGYCEQN------DIHS------PNITVEESIVFSAWLRLSTQIDSKTKAEFV 701
Q I + T +E + A +++ QI +F+
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE--IVEA-AKIA-QIH-----DFI 462
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
L DS V G N S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 IS------LPEGYDSRVERGGRN-FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ +K T I Q A D +L+ + G++ FG
Sbjct: 516 KRILDGLKR--YTKGCTTFIITQKIPTALLA--DKILVLHEGKVAGFG 559
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 24/181 (13%), Positives = 53/181 (29%), Gaps = 17/181 (9%)
Query: 641 IEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEF 700
+ + K SG E+ + + E
Sbjct: 160 VLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEG 219
Query: 701 VNEVLQTIELDGIKDSLVGLPG----VNGLSTEQRKRLTIAVEL------VANPSIIFMD 750
+ + V G + LS +R L +A L S++ +D
Sbjct: 220 KYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILD 279
Query: 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRI 805
EPT LD ++ ++ ++ V+ H ++ +A D ++ + + +
Sbjct: 280 EPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKVEV 337
Query: 806 I 806
+
Sbjct: 338 V 338
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 80/267 (29%)
Query: 573 TVTFEDL--RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630
+T +DL +Y + L +I+ + PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGNAI-------------LENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 631 VLSGRKTGGIIE--GDIRIGGYPKVQHTFARISGYCEQNDIHS-------PNITV--EES 679
++ G+I+I G S V ++
Sbjct: 66 AFLR-----LLNTEGEIQIDGV-----------------SWDSITLEQWRKAFGVIPQKV 103
Query: 680 IVFSAWLR-----LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP---------GVNG 725
+FS R + D + + +V + L + + P G
Sbjct: 104 FIFSGTFRKNLDPNAAHSDQE-----IWKVADEVGL---RSVIEQFPGKLDFVLVDGGCV 155
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI-HQ 784
LS ++ + +A +++ I+ +DEP++ LD + R +K V +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCEAR 213
Query: 785 -PSIDIFEAFD-DLVLMKNGGRIIYFG 809
++ + D L+ ++ +
Sbjct: 214 IEAM-----LECDQFLVIEENKVRQYD 235
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 46/169 (27%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 671
L+G SG+GK+TL+ ++G G I K ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDE--KDV------------TELPPKDRNV 77
Query: 672 ----------PNITVEESIVFSAWLRLSTQIDSKT-KAEFVNEVLQTIELDGIKDSLVGL 720
P++TV ++I F L L K + E +V + ++ I L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELR-----KAPREEIDKKVREVAKMLHIDKLLNRY 130
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMRA 767
P LS Q++R+ IA LV P ++ +DEP S LDA R +RA
Sbjct: 131 PW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 42/226 (18%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658
L++L I R G + ++G SG+GK+T + L+ + EG+I I G
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKA---- 90
Query: 659 RISGYCEQNDIHS---------------PNITVEESIVFS-AWLRLSTQIDSKTKAEFVN 702
+ +++ P++TV +I + +R + ++ KA
Sbjct: 91 ------KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM--- 141
Query: 703 EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
E+L + G+KD P LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 142 ELLDKV---GLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 763 TVMRAVKNVVETGRTVVCTIHQPSIDIF--EAFDDLVLMKNGGRII 806
V+ +K + G T+V H+ F E D ++ M +GG II
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFM-DGGYII 238
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L +++ G ++G +GAGKT +++++G G I + G V
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKD-VTDLSP--- 69
Query: 662 GYCEQNDIHS--------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
E++DI P++ V++++ F +R + + V +
Sbjct: 70 ---EKHDIAFVYQNYSLFPHMNVKKNLEFG--MR----MKKIKDPKRVLDTA-------- 112
Query: 714 KDSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMR 766
+ + + LS +++R+ +A LV NP I+ +DEP S LD + R
Sbjct: 113 --RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN---AR 167
Query: 767 A-VKNV-VETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRI--------IYFGP 810
+ + + TV+ H D EA D + ++ G++ I+ P
Sbjct: 168 EMLSVLHKKNKLTVLHITH----DQTEARIMADRIAVV-MDGKLIQVGKPEEIFEKP 219
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 671
L+G SG GKTT + +++G + EG I G + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--RDV------------TYLPPKDRNI 85
Query: 672 ----------PNITVEESIVFSAWLRLSTQIDSKT-KAEFVNEVLQTIELDGIKDSLVGL 720
P++TV E+I F L++ K K E V EL I++ L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIK-----KFPKDEIDKRVRWAAELLQIEELLNRY 138
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMRA 767
P LS QR+R+ +A +V P ++ MDEP S LDA R A MRA
Sbjct: 139 PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 28/192 (14%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQ 654
+ + I G + L+G +GAGKTT + ++G R G I I P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--A 75
Query: 655 HTFARISGYCEQNDIHSP-------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
H R G P +TV E+++ A+ R D + + +
Sbjct: 76 HVINR-MGIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSL 125
Query: 708 I-ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
L L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 126 FPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 767 AVKNVVETGRTV 778
++ + + G T+
Sbjct: 181 VIQKINQEGTTI 192
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 46/169 (27%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 671
L+G SG GKTT + +L+G G+I + NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDD--VLV------------NDIPPKYREV 77
Query: 672 ----------PNITVEESIVFSAWLRLSTQIDSKT-KAEFVNEVLQTIELDGIKDSLVGL 720
P++TV E+I F LR + K E V++ I + L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRAR-----RISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMRA 767
P LS Q++R+ +A LV P ++ DEP S LDA R MRA
Sbjct: 131 PT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D+ VG GV LS Q++RL+IA + NP I+ +DE TS LD + + + A+ + +
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK- 525
Query: 775 GRT 777
RT
Sbjct: 526 DRT 528
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI----HS- 671
L+G SG GKTT + +++G + G I IG V I + DI S
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD-KLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 672 ---PNITVEESIVFSAWLRLSTQIDSKT-KAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727
P++TV ++I F L+L K + E V + EL G+ + L P LS
Sbjct: 91 ALYPHMTVYDNIAFP--LKLR-----KVPRQEIDQRVREVAELLGLTELLNRKPR--ELS 141
Query: 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAATVMRA 767
QR+R+ + +V P + MDEP S LDA R MRA
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 32/231 (13%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-KVQHTF 657
++L ++ R G + +++G SG+GK+T + ++ + EG I + G +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 658 ARISGYCEQNDIHS---------------PNITVEESIVFSAWLRLSTQIDSKTKAEFVN 702
++N + ++TV E+++ + Q+ +K +
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 703 EVLQTIELDGIKDSLVGL-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
L+ + GI + G P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIF--EAFDDLVLMKNGGRIIYFGP 810
V+R ++ + E G+T+V H+ F ++ + + G+I G
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMG---FARHVSSHVIFL-HQGKIEEEGD 236
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFE 791
RL +++ L S++ +DEPT LD ++ ++ ++ V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH-------- 121
Query: 792 AFDDLVLMKNGGRIIYFGPLG 812
D L +I
Sbjct: 122 ---DEELKDAADHVIRISLEN 139
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---------- 649
+L + G + ALMG +GAGK+TL +L+G + G+I + G
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 650 -----------YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTK- 697
YP + G +T+ F L + +K
Sbjct: 77 RARKGLFLAFQYP------VEVPG-----------VTIAN---F-----LRLALQAKLGR 111
Query: 698 ----AEFVNEVLQTIELDGIKDSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEP 752
AEF +V + +EL +S + +N G S ++KR I LV P+ +DE
Sbjct: 112 EVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSGGEKKRNEILQLLVLEPTYAVLDET 170
Query: 753 TSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
SGLD A V R V + + H
Sbjct: 171 DSGLDIDALKVVARGVNAMRGPNFGALVITH 201
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS QR+ L I +ANP I+ +DE TS +D + ++ A+ ++E G+T + H
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAH 548
Query: 784 QPSIDIFEAFDDLVLMKNGGRII 806
+ + I A DL+++ G I+
Sbjct: 549 RLNT-IKNA--DLIIVLRDGEIV 568
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 57/215 (26%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---------- 649
+L ++ PG + A+MG +G+GK+TL L+GR+ + G + G
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED 93
Query: 650 -----------YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA 698
YP I G ++ + F L T +++
Sbjct: 94 RAGEGIFMAFQYP------VEIPG-----------VSNQF---F-----LQTALNAVRSY 128
Query: 699 ---------EFVNEVLQTIELDGIKDSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIF 748
+F + + + I L + + L+ VN G S ++KR I V P +
Sbjct: 129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVLEPELCI 187
Query: 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
+DE SGLD A V V ++ + R+ + H
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1174 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.87 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.85 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.85 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.85 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.85 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.84 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.84 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.84 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.84 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.84 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.83 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.83 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.83 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.83 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.83 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.83 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.83 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.83 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.83 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.82 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.82 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.81 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.8 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.8 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.8 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.8 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.8 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.79 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.79 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.79 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.78 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.78 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.78 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.78 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.78 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.78 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.77 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.77 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.77 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.77 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.77 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.75 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.71 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.71 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.71 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.7 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.69 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.69 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.68 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.68 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.67 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.65 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.65 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.65 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.65 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.64 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.61 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.6 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.59 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.57 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.57 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.57 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.57 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.53 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.51 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.51 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.51 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.48 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.48 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.47 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.41 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.4 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.38 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.35 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.35 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.34 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.33 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.33 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.32 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.32 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.3 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.29 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.28 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.28 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.28 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.28 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.27 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.23 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.23 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.22 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.21 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.21 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.18 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.17 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.15 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.13 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.11 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.11 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.1 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.08 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.08 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.05 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.01 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.99 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.94 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.91 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.85 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.85 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.79 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.77 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.76 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.74 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.73 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.7 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.66 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.66 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.63 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.56 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.53 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.51 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.5 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.49 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.45 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.44 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.43 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.37 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.21 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.15 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.15 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.13 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.12 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.11 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.07 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.04 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.01 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.96 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.95 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.95 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.94 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.93 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.89 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.88 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.87 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.85 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.77 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.76 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.74 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.73 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.69 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.69 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.66 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.62 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.61 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.54 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.53 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.52 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.52 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.5 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.49 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.48 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.47 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.46 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.45 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.42 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 97.41 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.4 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.35 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.34 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.29 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.29 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.27 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.23 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.2 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.19 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.18 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.15 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.15 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.11 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.08 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.02 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.98 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.97 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.96 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.95 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.89 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.88 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.88 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.85 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.84 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.73 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.69 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.63 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.57 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.54 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.53 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.49 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.46 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.45 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.43 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.4 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.4 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.3 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.28 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.24 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.22 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.22 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.22 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.2 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.2 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.19 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.16 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.13 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.12 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.1 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.03 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.03 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.96 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.94 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.82 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.8 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.69 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.69 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.65 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.51 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.48 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.45 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.44 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.42 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.41 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.35 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.29 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.26 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.19 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.16 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.06 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.04 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 94.97 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.95 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.95 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.94 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.89 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 94.89 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 94.86 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.77 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.71 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.53 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.42 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 94.39 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.35 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.25 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.21 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.14 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.11 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.1 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.09 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.07 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.96 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.95 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.92 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.87 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 93.86 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.86 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 93.85 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 93.76 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.72 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.66 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.66 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 93.64 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.63 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.52 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 93.51 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 93.47 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.45 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.32 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 93.25 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 93.17 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 93.11 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 93.08 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 93.07 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.03 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 92.98 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 92.97 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 92.96 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 92.93 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 92.89 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 92.85 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 92.83 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 92.78 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 92.74 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 92.73 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 92.71 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 92.7 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 92.68 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 92.64 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.61 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 92.58 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 92.54 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 92.54 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 92.52 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 92.51 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.5 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 92.5 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 92.5 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 92.48 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 92.43 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 92.43 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 92.41 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 92.38 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 92.37 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 92.36 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 92.35 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 92.34 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 92.32 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 92.3 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 92.29 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 92.29 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 92.28 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 92.24 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 92.23 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 92.21 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 92.19 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 92.17 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 92.15 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 92.15 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 92.11 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 92.1 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 92.08 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 92.08 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 92.03 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 92.03 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 92.01 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 91.99 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 91.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 91.91 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 91.89 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.84 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 91.83 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 91.79 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 91.79 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 91.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 91.7 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 91.66 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 91.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 91.63 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 91.62 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.59 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 91.56 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 91.51 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 91.49 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 91.47 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 91.45 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 91.42 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 91.41 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 91.41 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 91.41 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 91.36 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 91.36 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 91.35 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 91.34 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 91.3 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.3 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 91.27 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 91.24 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 91.18 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 91.18 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 91.17 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 91.17 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 91.17 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 91.15 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 91.1 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 91.09 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 91.05 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 91.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 90.99 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 90.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 90.95 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 90.94 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 90.93 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 90.92 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 90.88 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 90.88 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 90.87 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 90.86 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 90.85 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 90.83 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 90.8 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 90.78 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 90.71 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 90.7 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 90.7 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 90.68 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 90.66 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 90.66 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=642.12 Aligned_cols=217 Identities=26% Similarity=0.369 Sum_probs=181.7
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||+|.++. .++.++|+|+||+|+|||.+||+||||||||||+++|.|.++ |.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 36999999996531 124579999999999999999999999999999999999987 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+| +.|++|||.|+.. +.+.+. +.+.++++..+ |++..||.+|+.
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCC-SEEHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEee-CccHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 865 35788899999999876 5699999987631 222333 33455555554 456689999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +|+|+|+|+|+++. ...+|++++|.
T Consensus 1215 G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS- 1289 (1321)
T ss_dssp SC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-
T ss_pred Cc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-
Confidence 75 599999999999999999999999999999999999999999999865 48999999999863 56789999986
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|+++++|++++
T Consensus 1290 ~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQ 1301 (1321)
T ss_dssp SSSEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999854
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-56 Score=587.11 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=175.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.++. .++.++|+|+||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||++
T Consensus 1029 g~i~~~~v~~~y~~----------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT----------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSC----------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCC----------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 35999999985421 123479999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~ 721 (1174)
+.. ...++.++||+|++.++ +.||+||+.++... ...+.++ +.+.++.. .+.+..|+.+|+.
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 23567899999998765 57999999875321 1122222 22222222 3455678889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+. .|||||||||+|||||+++|+||+|||||||||+.+++.+.+.|+++. +|+|+|+++||++ .+ ..+|+++++.
T Consensus 1169 G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQ- 1243 (1284)
T ss_dssp SC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEE-
T ss_pred CC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999998854 5899999999987 34 5689988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1244 ~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQ 1255 (1284)
T ss_dssp TBEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=456.86 Aligned_cols=204 Identities=24% Similarity=0.262 Sum_probs=168.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ ++ ..|+++||++++||+++|+||||||||||+|+|+|..+ |.+|+|.+
T Consensus 356 ~~l~~~~l~~~~-------------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY-------------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEEC-------------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----
T ss_pred eEEEEeceEEEe-------------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----
Confidence 358888887643 12 36899999999999999999999999999999999887 45788865
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.+.++|++|+....+.+||.|++....... ....++++++++.+++.+..++.++ .||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHH
Confidence 235899999987778899999887641110 0113557889999999888887764 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G 809 (1174)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+...+|+++++.+ .|+++..|
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g 556 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRAL 556 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecC
Confidence 999999999999999999999999999999999999999974 5999999999975 56667899888862 27888899
Q ss_pred CCCcc
Q 001048 810 PLGQH 814 (1174)
Q Consensus 810 ~~~~~ 814 (1174)
++++.
T Consensus 557 ~p~~~ 561 (607)
T 3bk7_A 557 PPMGM 561 (607)
T ss_dssp CCEEH
T ss_pred CHHHH
Confidence 98654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=446.73 Aligned_cols=216 Identities=21% Similarity=0.225 Sum_probs=170.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+. ...|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC--------------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 577788776431 135777899999999999999999999999999999887 56899987643
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.++|++|+....+.+||+||+.+..... .. ...+.++++++.+++.+..++.++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 4699999876667899999998742111 11 112346788899999888777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGP 810 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~ 810 (1174)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ .+...+|+++++.. .|+....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999975 56677899988863 245666666
Q ss_pred CCccchhhhhhhhhC
Q 001048 811 LGQHSCKVIEYFECI 825 (1174)
Q Consensus 811 ~~~~~~~~~~~f~~~ 825 (1174)
+.........|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333344555443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=447.72 Aligned_cols=203 Identities=25% Similarity=0.277 Sum_probs=166.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. + ..|+++||++++||++||+||||||||||+|+|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 578888876431 1 36889999999999999999999999999999999887 45788875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++|++|+....+.+||.|++........ ...++++++++.+++.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2358999999877788999998865311110 012457788999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGP 810 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~ 810 (1174)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ .+...+|+++++.+ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999974 5999999999975 56677899988863 278888999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+++.
T Consensus 488 ~~~~ 491 (538)
T 1yqt_A 488 PMGM 491 (538)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 8653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=446.07 Aligned_cols=201 Identities=19% Similarity=0.215 Sum_probs=160.9
Q ss_pred cccccceeEEeCC-----eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 600 QLLSDITGTFRPG-----ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 600 ~iL~~vs~~i~~G-----e~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
.+++|+||++++| |+++|+||||||||||+++|+|..+ |.+|+. .. +..++|++|+....+..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 5788999999988 7899999999999999999999887 346641 11 23589999987766778
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
||+|++... .+. ... ..+.++++++.+++.+..++.++ .|||||||||+|||||+.+|++|||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 111 111 12456788999999988887754 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCCccchhhhhhhhhC
Q 001048 755 GLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~~~~~~~~~~f~~~ 825 (1174)
|||+.++..+.++|+++++ .|+|||++|||++ .+...+|+++++.. .|+++..|++++.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 9999999999999999864 5999999999975 56677899888864 289999999976543333444443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=407.85 Aligned_cols=220 Identities=21% Similarity=0.304 Sum_probs=190.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48999999876421 123579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... ..++.+|||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++..+ +|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 532 13567999999999999999999999987654 34566677889999999999988877653 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||||||+.++..++++|++++++ |+|||++||+++ .+.+.+|++++|. +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999875 5667789888886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 243 v~~g~~~e 250 (366)
T 3tui_C 243 IEQDTVSE 250 (366)
T ss_dssp EECCBHHH
T ss_pred EEEcCHHH
Confidence 99999754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=385.85 Aligned_cols=221 Identities=23% Similarity=0.347 Sum_probs=185.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 6788998866421 113479999999999999999999999999999999999987 56999999999875
Q ss_pred ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCC
Q 001048 654 QHT-------FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNG 725 (1174)
Q Consensus 654 ~~~-------~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 725 (1174)
... .++.+|||+|++.+++.+||+||+.++...+........+..+++.++++.+++.+. .+..+ .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 321 134599999999999999999999998654422234456667788899999999764 36554 46
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ ++.+.+|+++++. +|+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--~~~~~~d~i~~l~-~G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLK-DGE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--HHHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 99999999986 4567788888886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.+++++
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999998753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=407.72 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=191.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+||||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 7889998854 24679999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..++... +|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHH
Confidence 42 33467999999999999999999999987654 34566777889999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 999999999999999999999999999999999999999765 999999999975 6778889999887 5999999998
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (381)
T 3rlf_A 219 LE 220 (381)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=406.16 Aligned_cols=216 Identities=24% Similarity=0.377 Sum_probs=187.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37889998854 24679999999999999999999999999999999999987 5699999999986
Q ss_pred ----Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 ----VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ----~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.+|||+|++.++|++||+||+.|+...+ ...+++.+++++++++.++|.+..|+..+ +||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 22 234567999999999999999999999975433 23445667789999999999998888754 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|+|+|++|||++ ++...+|++++|. +|+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999888875 45999999999975 6777889998887 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
..|++++
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=446.73 Aligned_cols=207 Identities=23% Similarity=0.292 Sum_probs=154.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ...++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 671 mL~v~nLs~~Y-----------~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQY-----------PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECC-----------TTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred eEEEEeeEEEe-----------CCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 48899998743 1123579999999999999999999999999999999999887 56999999862
Q ss_pred CcccccceEEEEccCCCC----CCCCCHHHHHHHHHhhcc------------C---------------------------
Q 001048 653 VQHTFARISGYCEQNDIH----SPNITVEESIVFSAWLRL------------S--------------------------- 689 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~----~~~lTv~e~l~~~~~~~~------------~--------------------------- 689 (1174)
..++|++|++.. ....|++|++.+...... .
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136888886421 124577777765311000 0
Q ss_pred -------------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCC
Q 001048 690 -------------------------TQI--------D--------------------------SKTKAEFVNEVLQTIEL 710 (1174)
Q Consensus 690 -------------------------~~~--------~--------------------------~~~~~~~~~~~l~~l~l 710 (1174)
... . .....++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 000 0 00013457889999999
Q ss_pred CC-c-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 001048 711 DG-I-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID 788 (1174)
Q Consensus 711 ~~-~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 788 (1174)
.+ . .+..+ ++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 74 2 35544 369999999999999999999999999999999999999999888764 679999999864 3
Q ss_pred HHHHhcceeEEecCcEEEEEcC
Q 001048 789 IFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 789 ~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.+.+|+++++. +|+++..|+
T Consensus 961 v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCB-TTBCCC---
T ss_pred HHHhCCEEEEEE-CCEEEEeCC
Confidence 445678888776 589887775
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=442.02 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=144.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh----------------------CCCCCCeEEEEEEECCeeCCccc
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS----------------------GRKTGGIIEGDIRIGGYPKVQHT 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~----------------------g~~~~~~~~G~i~~~g~~~~~~~ 656 (1174)
+.+|+||||+|++||++||+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 46899999999999999999999999999998764 111 12367888877653210
Q ss_pred cc--------------------------------------------ceEEEEccCCCCC---------------------
Q 001048 657 FA--------------------------------------------RISGYCEQNDIHS--------------------- 671 (1174)
Q Consensus 657 ~~--------------------------------------------~~~~~v~Q~~~~~--------------------- 671 (1174)
.. +..|++.|+..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 00 0113333332222
Q ss_pred -----------CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 672 -----------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 672 -----------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
..+||+||+.+.... ...+++.+.++.+++.. ..+... .+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHH
Confidence 247999999874311 12234567788888864 234443 4699999999999999
Q ss_pred hhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCC
Q 001048 740 LVANP---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPL 811 (1174)
Q Consensus 740 l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~ 811 (1174)
|+.+| ++|||||||+|||+.++..++++|++++++|+|||++||+++ ....+|++++|. ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99887 599999999999999999999999999888999999999864 457789888883 46999999997
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 636 ~ 636 (670)
T 3ux8_A 636 E 636 (670)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=393.57 Aligned_cols=217 Identities=26% Similarity=0.367 Sum_probs=186.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 589999998541 12459999999999999999999999999999999999887 5699999999987
Q ss_pred Cc-----ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQ-----HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~-----~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. ...++.+|||+|++ ..++.+||+||+.++.... ..+.++..++++++++.++|.+..++.++ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 31 12456799999986 3445799999999986543 34566667889999999999988887754 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.+|++++|. +|++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999997 56999999999987 5667789998886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=379.72 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=182.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 37889998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cccc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------FA-RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~~-~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... .+ +.++||+|++.+++.+||+||+.++...+ .....+..++++++++.+++.+..++.++ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----E 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 4321 12 56999999999999999999999976543 22344556778999999999988877654 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ..+.+|+++++. +|++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~-~G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMK-DGKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEE-TTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 347788888886 5999
Q ss_pred EEEcCC
Q 001048 806 IYFGPL 811 (1174)
Q Consensus 806 v~~G~~ 811 (1174)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=388.20 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=184.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 38999999864 23579999999999999999999999999999999999987 5699999999987
Q ss_pred C--c---ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 V--Q---HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~--~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
. . ...++.+|||+|++.+++.+||+||+.++. ... .....+..++++++++.++|.+..++.++ +|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hC
Confidence 3 1 123456999999999999999999999964 322 23344556778999999999888777654 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMD-GGYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999874 4566788888886 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
+.|+++
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=388.43 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=184.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 38899998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCc-c
Q 001048 653 VQ----------------HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGI-K 714 (1174)
Q Consensus 653 ~~----------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~ 714 (1174)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ .....+..++++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123456999999999999999999999864 322 23344556778999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|
T Consensus 148 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 77654 69999999999999999999999999999999999999999999999877999999999874 4566789
Q ss_pred ceeEEecCcEEEEEcCCC
Q 001048 795 DLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~~v~~G~~~ 812 (1174)
+++++. +|++++.|+++
T Consensus 222 ~v~~l~-~G~i~~~g~~~ 238 (262)
T 1b0u_A 222 HVIFLH-QGKIEEEGDPE 238 (262)
T ss_dssp EEEEEE-TTEEEEEECHH
T ss_pred EEEEEE-CCEEEEeCCHH
Confidence 888886 59999999863
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=398.25 Aligned_cols=218 Identities=23% Similarity=0.393 Sum_probs=189.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ . +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|++
T Consensus 13 ~~l~~~~l~~~y-----------~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIY-----------P-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECC-----------T-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEE-----------c-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 358899998742 1 24579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 652 KVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
+... ..++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+..+ +|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 7532 34567999999999999999999999987543 23455667789999999999988887754 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLH-EGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999875 5677889988886 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 229 ~~~~ 232 (355)
T 1z47_A 229 TPEE 232 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=383.78 Aligned_cols=215 Identities=26% Similarity=0.346 Sum_probs=184.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48899999854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+|||+|++.+++.+||+||+.++.... .....+..++++++++.++|.+..++.++ .|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 43 224567999999999999999999999976443 22334445678899999999888777654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|+++++. +|++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~-~G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEE-CCEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999864 4455688888886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=398.06 Aligned_cols=215 Identities=27% Similarity=0.376 Sum_probs=187.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 7888888743 24579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ...+++.+++++++++.++|.+..++..+ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999986543 23455566789999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIR-EGEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999999765 999999999875 5677889998886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (362)
T 2it1_A 219 DE 220 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=385.43 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=184.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 48899999854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhh-ccCC---------CCCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWL-RLST---------QIDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
... ..++.+|||+|++.+++.+||+||+.++... .... .....+..++++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 1245699999999888999999999986432 1000 0122344567889999999988887775
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
+ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999877999999999986 56677899888
Q ss_pred EecCcEEEEEcCCCc
Q 001048 799 MKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 799 l~~~G~~v~~G~~~~ 813 (1174)
+. +|++++.|++++
T Consensus 226 l~-~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MF-NGQIIAEGRGEE 239 (257)
T ss_dssp EE-TTEEEEEEESHH
T ss_pred EE-CCEEEEEeCHHH
Confidence 86 599999998743
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=398.37 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=186.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 7888988754 23579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ..++.+.+++++++++.++|.+..++..+ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999975432 22334445678999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFN-QGKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999875 5667889988886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=398.40 Aligned_cols=215 Identities=24% Similarity=0.351 Sum_probs=187.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 7888998754 23579999999999999999999999999999999999987 56999999998864
Q ss_pred c-------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
. ...++.+|||+|+..+++++||+||+.|+...+ .....+.+++++++++.++|.+..++..+ +|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 3 123467999999999999999999999987543 23455566789999999999988887754 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999975 5677889988886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
+..|++++
T Consensus 219 ~~~g~~~~ 226 (372)
T 1g29_1 219 QQVGSPDE 226 (372)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 99999754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=397.71 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=186.9
Q ss_pred EEEeceEEEEeeCCccccccccccccc--ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQ--LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++++|+++.+ ++++ +|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|++
T Consensus 4 l~i~~l~~~y-------------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVF-------------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEE-------------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 7888988754 2346 9999999999999999999999999999999999987 569999999988
Q ss_pred CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 652 KVQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 652 ~~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
+.. ...++.+|||+|+..+++++||+||+.|+...+ ....++.+++++++++.++|.+..++..+ +
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 643 234567999999999999999999999975432 23455667789999999999988887754 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999764 999999999975 5677889988886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
++..|++++
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999999754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=384.00 Aligned_cols=214 Identities=22% Similarity=0.330 Sum_probs=184.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 58899999854 24679999999999999999999999999999999999887 4589999999987
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.++ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 542 24566899999998888999999999875432 122345678899999999988887654 69999
Q ss_pred HHHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 730 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 730 qrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++++|. +
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~ 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-Q 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999 99999999999999999999999999999765 579999999875 5666789888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 99999999865
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=377.95 Aligned_cols=214 Identities=20% Similarity=0.311 Sum_probs=180.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 48899998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCC
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 727 (1174)
.... .++.+||++|++.+++.+||+||+.++.... ....+..+.++++++.++ +.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 5321 2345999999999999999999999863211 122334566788999994 877766654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999864 5667889988886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 99864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=397.88 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=181.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 8899998854 23579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ...+++.+++++++++.++|.+..++..+ +|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999875332 23455566789999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999875 5667889988886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 227 ~~ 228 (372)
T 1v43_A 227 TE 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=391.22 Aligned_cols=211 Identities=21% Similarity=0.328 Sum_probs=182.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++ +|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5678887743 235 9999999999999999999999999999999999987 56999999999875
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 Q-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.+|||+|+..+++++||+||+.|+...+.. .+. ++++++++.++|.+..|+..+ +|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 3 22356799999999999999999999998754321 111 678899999999998888754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999764 999999999874 5677889888886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 213 ~~ 214 (348)
T 3d31_A 213 EE 214 (348)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=384.10 Aligned_cols=213 Identities=27% Similarity=0.368 Sum_probs=175.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.+. +++.+|+||||+|++||++||+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEE
Confidence 3599999998642 23579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+... .+++.+|||+|++.++ ..||+|||.++... ... +.++++++.+++. +..++.++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccC-cccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 7542 3567799999998877 56999999986321 122 2234444444443 3456777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|++||+++ ....+|++++|.
T Consensus 188 g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~- 262 (306)
T 3nh6_A 188 G-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIK- 262 (306)
T ss_dssp S-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEE-
T ss_pred c-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 5 46999999999999999999999999999999999999999999999864 799999999874 445689998887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 263 ~G~iv~~G~~~e 274 (306)
T 3nh6_A 263 DGCIVERGRHEA 274 (306)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=370.93 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=177.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ ++ +|+|+||++++ |+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL-------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE-------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEe-------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888754 12 49999999999 9999999999999999999999987 56999999999874
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 Q-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+++.+..++.++ +|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 3 234567899999999999999999998864221 112235678899999999888777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++++. +|++++.|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999864 5667789888886 5999999986
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 212 ~ 212 (240)
T 2onk_A 212 K 212 (240)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=421.14 Aligned_cols=200 Identities=27% Similarity=0.430 Sum_probs=148.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHH---------HHHhCCCC-C---CeEEE------EEEECCeeCCccc---
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLM---------DVLSGRKT-G---GIIEG------DIRIGGYPKVQHT--- 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~--- 656 (1174)
...|+|||++|++||+++|+||||||||||+ +.+.|... . .+..| .+.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 34444221 0 12233 3555554432100
Q ss_pred -----------------------------------------ccceEEEEccCCCCCC-----------------------
Q 001048 657 -----------------------------------------FARISGYCEQNDIHSP----------------------- 672 (1174)
Q Consensus 657 -----------------------------------------~~~~~~~v~Q~~~~~~----------------------- 672 (1174)
..+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012367777665554
Q ss_pred ---------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 ---------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
.+||.|++.|... ....+++.++++.+||... ..+.+ ..+|||||||||+|||||+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhC
Confidence 3688888877431 1223456788999998642 22222 246999999999999999987
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 744 P---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 744 p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
| +||||||||+|||+.++..+++.|++++++|.|||+|+|++ ++...+|++++|. ++|++++.|++++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 5 79999999999999999999999999988899999999986 4566789998883 5799999999854
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=371.78 Aligned_cols=217 Identities=23% Similarity=0.285 Sum_probs=174.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC--CCCCeEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~--~~~~~~~G~i~~~g~~ 651 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|. .+ |.+|+|.++|++
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 7889998854 235799999999999999999999999999999999997 44 679999999998
Q ss_pred CCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-CCcccccccCCCCCC-
Q 001048 652 KVQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNG- 725 (1174)
Q Consensus 652 ~~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~- 725 (1174)
+.... . ++.++|++|++.+++.+||+||+.++............+..++++++++.+++ .+..++.++ .
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cC
Confidence 74321 1 33489999999999999999999987532111112233445678899999999 477777653 5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~-~G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMM-DGR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999767999999999975 34444 48888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (250)
T 2d2e_A 222 VVATGGPE 229 (250)
T ss_dssp EEEEESHH
T ss_pred EEEEeCHH
Confidence 99999864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=375.30 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=180.0
Q ss_pred EEEeceEEEEeeCCccccccccccc---ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTR---LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
++++|+++.+.. ++ +++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+
T Consensus 3 l~~~~l~~~y~~-----------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~ 69 (266)
T 2yz2_A 3 IEVVNVSHIFHR-----------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGE 69 (266)
T ss_dssp EEEEEEEEEEST-----------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred EEEEEEEEEecC-----------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCE
Confidence 678899886520 12 479999999999999999999999999999999999987 56999999999
Q ss_pred eCCcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--CcccccccCCCCCCCC
Q 001048 651 PKVQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD--GIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~LS 727 (1174)
++.....++.+|||+|++ ..++.+||+||+.++.... ....+..++++++++.++|. +..++.++ +||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LS 140 (266)
T 2yz2_A 70 RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLS 140 (266)
T ss_dssp ECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSC
T ss_pred ECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCC
Confidence 875333456799999985 4567899999999864321 11122245678899999998 77777653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++. +|++++
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~-~G~i~~ 218 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLE-KGKKVF 218 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 4556788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 219 ~g~~~ 223 (266)
T 2yz2_A 219 DGTRM 223 (266)
T ss_dssp EEEHH
T ss_pred eCCHH
Confidence 99863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=416.90 Aligned_cols=197 Identities=27% Similarity=0.411 Sum_probs=149.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHh-C----C-----CCCC---eEEE------EEEECCeeCCccc----
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-G----R-----KTGG---IIEG------DIRIGGYPKVQHT---- 656 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~---- 656 (1174)
..|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.++|.++....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4799999999999999999999999999999864 2 1 1111 2334 5888887753110
Q ss_pred ------------------ccceEEEEccCCCCC----------------------C------------------------
Q 001048 657 ------------------FARISGYCEQNDIHS----------------------P------------------------ 672 (1174)
Q Consensus 657 ------------------~~~~~~~v~Q~~~~~----------------------~------------------------ 672 (1174)
..+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 012347777743221 1
Q ss_pred --------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 --------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
.+||.|++.|... . . ..+++.++++.++|.. ..+..+ ..|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcC
Confidence 3578888776321 1 1 1234567899999976 455554 36999999999999999987
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 744 P---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 744 p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 5 999999999999999999999999999888999999999864 456789988884 479999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=378.53 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=179.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 20 ~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 358999999854 23579999999999999999999999999999999999987 569999999987
Q ss_pred CC--c---ccccceEEEEccCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 652 KV--Q---HTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~--~---~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+. . ...++.+|||+|++.+. +.+||+||+.++...... ......+..++++++++.+++.+..++.++
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 160 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG---- 160 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh----
Confidence 64 2 22456799999986543 356999999875311000 011123345678899999999888777654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCCHHHHHHhcceeEEec
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV--VCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.+|+++++.
T Consensus 161 -~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~- 237 (279)
T 2ihy_A 161 -YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK- 237 (279)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-
T ss_pred -hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 699999999999999999999999999999999999999999999997669999 99999975 4557789888886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 238 ~G~i~~~g~~~~ 249 (279)
T 2ihy_A 238 DGQSIQQGAVED 249 (279)
T ss_dssp TTEEEEEEEHHH
T ss_pred CCEEEEECCHHH
Confidence 599999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=369.12 Aligned_cols=221 Identities=22% Similarity=0.292 Sum_probs=180.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||+|++||+++|+||||||||||+|+|+|.....|.+|+|.++|+++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 58999999854 23579999999999999999999999999999999999842226799999999986
Q ss_pred Cccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHh-hc---cCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAW-LR---LSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.... . ++.++||+|++.+++.+||.||+.+... .+ .....+..+..++++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 4321 1 2348999999999999999999987542 11 111223444456788999999996 46666543
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~ 802 (1174)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|+++++. +
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~-~ 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-Q 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEE-T
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEE-C
Confidence 149999999999999999999999999999999999999999999998767999999999975 33343 68888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 9999999975
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=364.85 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=176.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++ . ++|+|+||++++||+++|+||||||||||+|+|+|..+ +. |+|.++|+++
T Consensus 4 ~l~~~~l~~----------------~-~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAE----------------S-TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEE----------------T-TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEG
T ss_pred EEEEEceEE----------------E-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEEC
Confidence 377888876 1 68999999999999999999999999999999999987 57 9999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ...++.++|++|++.+++.+||+||+.++.. . ... .++++++++.+++.+..++.+ .+||||
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 130 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGG 130 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHH
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 43 2345679999999988889999999987521 1 111 456788999999988877765 369999
Q ss_pred HHHHHHHHHHhhcCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 730 QRKRLTIAVELVANPS-------IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~-------illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
|||||+|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++. +
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~-~ 208 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLK-G 208 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999999 99999999999999999999999999877999999999864 4557788888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 209 G~i~~~g~~~~ 219 (249)
T 2qi9_C 209 GKMLASGRREE 219 (249)
T ss_dssp TEEEEEEEHHH
T ss_pred CEEEEeCCHHH
Confidence 99999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=362.67 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 378899988541 03579999999999999999999999999999999999987 5699998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.++.++||+|++.+++.+||+||+.++....... .....+..++++++++.+++.+..++.++ +||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHH
Confidence 2356899999998888999999999864321110 01123345678899999999888777654 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLN-KQN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEE-TTE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCe-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999874 4557889988887 589 99998
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=357.86 Aligned_cols=201 Identities=20% Similarity=0.302 Sum_probs=167.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ++ ++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 58899998742 24 79999999999999999999999999999999999987 5699999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++||+|++.+++.+||+||+.++...+.. . .+ .++++++++.+++.+. +..+ .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 5 3567799999999999999999999987644211 1 11 3567889999999876 6554 469999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++ ++. +|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v-~~~-~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENL-HKY-STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEG-GGG-BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE-EEe-CCcc
Confidence 999999999999999999999999999999999999999867899999999986 444444554 444 3665
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=406.52 Aligned_cols=197 Identities=25% Similarity=0.384 Sum_probs=144.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHH-HhCCC-------CC----------------CeEEE-------EEEEC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GIIEG-------DIRIG 648 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~-l~g~~-------~~----------------~~~~G-------~i~~~ 648 (1174)
.+|+|||++|++||++||+|+||||||||+++ |+|.. .+ .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 76421 11 13577 78999
Q ss_pred CeeCCcccc-------------c---------ceEEEEcc----------------------CCCCC-------------
Q 001048 649 GYPKVQHTF-------------A---------RISGYCEQ----------------------NDIHS------------- 671 (1174)
Q Consensus 649 g~~~~~~~~-------------~---------~~~~~v~Q----------------------~~~~~------------- 671 (1174)
|.++..... + +..||.++ +-.++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 877532110 0 11122211 11111
Q ss_pred -----------CC--------CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHH
Q 001048 672 -----------PN--------ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 672 -----------~~--------lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqr 731 (1174)
.. +|+.|++.|.. . ....+++.++++.++|... .+..+ ..||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~---~~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGek 736 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D---ESAIFRALDTLREVGLGYLRLGQPA-----TELSGGEA 736 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T---SHHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c---chHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHH
Confidence 12 34555544321 1 1123467889999999763 34443 46999999
Q ss_pred HHHHHHHHhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCc
Q 001048 732 KRLTIAVELVAN---PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGG 803 (1174)
Q Consensus 732 qRv~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G 803 (1174)
|||+||++|+++ |+||||||||+|||+.+...+.+.|++++++|.|||+++|+++ ..+.+|++++|. ++|
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCC
Confidence 999999999996 6999999999999999999999999999888999999999864 447789888884 479
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 815 ~Iv~~g~~~ 823 (842)
T 2vf7_A 815 RLVAQGTPA 823 (842)
T ss_dssp SEEEEECHH
T ss_pred EEEEEcCHH
Confidence 999999874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.99 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=173.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 4689999998531 123579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc-------cccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS-------LVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~ 721 (1174)
+... .+++.++||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..++ .++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 7532 24567999999988875 699999987521 112 2345667777777654332 23332
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ . .+.+|++++|.
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~-~~~~d~v~~l~- 217 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-T-VKNADRIIVME- 217 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-G-GTTSSEEEEEE-
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-H-HHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999995 5999999999975 3 35688888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 218 ~G~i~~~g~~~ 228 (247)
T 2ff7_A 218 KGKIVEQGKHK 228 (247)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 59999999863
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=370.78 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=172.1
Q ss_pred EEEEeceEEEEeeCCccccccccc-ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQ-TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++||++.+. . +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 16 ~l~~~~l~~~y~-----------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 82 (271)
T 2ixe_A 16 LVKFQDVSFAYP-----------NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEP 82 (271)
T ss_dssp CEEEEEEEECCT-----------TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEeC-----------CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 489999998431 1 12579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHH-----HHHHHHHHHHHc--CCCCcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKT-----KAEFVNEVLQTI--ELDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~ 721 (1174)
+... .+++.++||+|++.+++ .||+||+.++.... . ...+ ....++++++.+ |+.+..+...
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~--- 154 (271)
T 2ixe_A 83 LVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETG--- 154 (271)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG---
T ss_pred cccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc---
Confidence 7432 23567999999988876 59999998863211 1 1011 122345667777 5665555543
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ ....+|++++|.
T Consensus 155 --~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~ 230 (271)
T 2ixe_A 155 --NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLK 230 (271)
T ss_dssp --TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEE
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 4899999999864 445688888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 231 -~G~i~~~g~~~ 241 (271)
T 2ixe_A 231 -EGSVCEQGTHL 241 (271)
T ss_dssp -TTEEEEEECHH
T ss_pred -CCEEEEECCHH
Confidence 59999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=393.47 Aligned_cols=214 Identities=21% Similarity=0.323 Sum_probs=175.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y-----------~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRY-----------FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECS-----------SSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEc-----------CCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 359999999854 2234679999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+... ..++.++||+|++.+++ .||+||+.++.. ..+.++ +.+.++..+ +.+..|+.+++.
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 7542 35678999999998875 599999987531 122222 223333333 344567888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ....+|+++++.
T Consensus 477 ~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~- 551 (587)
T 3qf4_A 477 G-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH- 551 (587)
T ss_dssp S-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-
T ss_pred C-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-
Confidence 5 4699999999999999999999999999999999999999999999975 4899999999874 456889998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 552 ~G~i~~~g~~~e 563 (587)
T 3qf4_A 552 EGKVAGFGTHKE 563 (587)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999854
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=360.35 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=173.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ . +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-----------~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAY-----------D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECS-----------S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEe-----------C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 5778888742 1 23579999999999999999999999999999999999987 56899999999874
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc-------ccCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL-------VGLPGV 723 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~~ 723 (1174)
. ...++.++||+|++.+++ .||+||+.++.. + ... .++++++++.+++.+..+.. ++.+ .
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 3 234567999999988876 599999987521 1 111 23467788888887765543 2222 3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
..|||||||||+|||||+++|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ....+|+++++. +|
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999987 6999999999864 446689888886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 214 ~i~~~g~~~~ 223 (243)
T 1mv5_A 214 QITGSGKHNE 223 (243)
T ss_dssp EECCCSCHHH
T ss_pred EEEEeCCHHH
Confidence 9999888643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=387.26 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=178.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++ .+++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~-----------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQ-----------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcC-----------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 3599999998652 112579999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 721 (1174)
+.. ..+++.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998876 599999998631 1 112 234666777776653 356777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++ ..+.+|+++++.
T Consensus 478 ~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~- 552 (582)
T 3b5x_A 478 G-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD- 552 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 4 46999999999999999999999999999999999999999999999865 999999999975 456789998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 553 ~G~i~~~g~~~~ 564 (582)
T 3b5x_A 553 EGEIIERGRHAD 564 (582)
T ss_pred CCEEEEECCHHH
Confidence 599999999753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=354.19 Aligned_cols=211 Identities=27% Similarity=0.401 Sum_probs=169.7
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++|+++.+. .. .+++|+|+||++++||+++|+||||||||||+|+|+|..+ + +|+|.++|++
T Consensus 17 ~l~i~~l~~~y~-----------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~ 82 (260)
T 2ghi_A 17 NIEFSDVNFSYP-----------KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKN 82 (260)
T ss_dssp CEEEEEEEECCT-----------TCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEE
T ss_pred eEEEEEEEEEeC-----------CCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEE
Confidence 489999998431 11 2469999999999999999999999999999999999876 4 7999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+... ..++.++||+|++.+++ .||+||+.++.. ... .+.+.++++.+++. +..|+.++..
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~ 152 (260)
T 2ghi_A 83 VNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152 (260)
T ss_dssp GGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS
T ss_pred hhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC
Confidence 7432 24567999999998875 699999987521 111 12345566666553 3344545443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++ . .+.+|+++++.
T Consensus 153 -~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~-~~~~d~i~~l~- 227 (260)
T 2ghi_A 153 -GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-T-ISSAESIILLN- 227 (260)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-STTCSEEEEEE-
T ss_pred -cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-H-HHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999865 899999999975 3 35688888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 228 ~G~i~~~g~~~ 238 (260)
T 2ghi_A 228 KGKIVEKGTHK 238 (260)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 59999999864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=353.03 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=171.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||+++ ||+++|+||||||||||+|+|+|.. + .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5778888765210 011579999999999 9999999999999999999999987 4 4899999998864
Q ss_pred cccccceEE-EEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHH
Q 001048 654 QHTFARISG-YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~~~~~~~~-~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 731 (1174)
....++.++ |++|++.+ .+||+||+.++.... .. ..++++++++.+++. +..++..+ +||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 321255789 99999876 899999999876432 11 134578899999998 77776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc-ceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD-DLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.+| +++++. +|++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~-~G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLV-GNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEE-CCEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999975 4556788 888886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 210 ~~ 211 (263)
T 2pjz_A 210 VS 211 (263)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=398.67 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=175.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 338 ~~i~~~~v~~~y-----------~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQY-----------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECS-----------CSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEc-----------CCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 359999999854 2234579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ...++.++||+|++.+++. ||+||+.++.. ..+. +.+.+.++..++ .+..|+.+|+.
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 754 2356779999999988765 99999987521 1122 223344444443 44567888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+. +||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++ . .+.+|+++++.
T Consensus 475 g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~-~~~~d~i~~l~- 549 (578)
T 4a82_A 475 GV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-T-ITHADKIVVIE- 549 (578)
T ss_dssp GT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-G-TTTCSEEEEEE-
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHcCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999999885 4799999999986 3 45689998887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 550 ~G~i~~~g~~~e 561 (578)
T 4a82_A 550 NGHIVETGTHRE 561 (578)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=389.11 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=173.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++ +++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 3599999998431 23579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ..+++.++||+|++.+++ .||+||+.++.. ..+.+ .++++++..++ .+..|+.+|+.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 754 235678999999998775 699999987521 11111 23333333333 34456777655
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++ . .+.+|+++++.
T Consensus 489 g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~-~~~~d~i~~l~- 563 (598)
T 3qf4_B 489 G-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-T-IKNADLIIVLR- 563 (598)
T ss_dssp H-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-H-HHHCSEEEEEC-
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHcCCEEEEEE-
Confidence 4 3699999999999999999999999999999999999999999999986 5999999999987 3 45689998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 564 ~G~i~~~g~~~~ 575 (598)
T 3qf4_B 564 DGEIVEMGKHDE 575 (598)
T ss_dssp SSSEEECSCHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=391.67 Aligned_cols=214 Identities=25% Similarity=0.344 Sum_probs=177.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||+++
T Consensus 341 ~i~~~~v~~~y-----------~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTY-----------PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECS-----------SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEc-----------CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 48999999843 2112579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+.+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 54 234567999999998876 599999988531 1 122 234666777776643 4577777665
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++ . .+.+|+++++. +
T Consensus 479 -~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~-~~~~d~i~~l~-~ 553 (582)
T 3b60_A 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-T-IEQADEIVVVE-D 553 (582)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-G-TTTCSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-H-HHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999865 999999999986 3 45789988886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 554 G~i~~~g~~~~ 564 (582)
T 3b60_A 554 GIIVERGTHSE 564 (582)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEecCHHH
Confidence 99999999753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=342.11 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=159.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ..+++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 6 ~l~~~~l~~~y-----------~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFW-----------EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECS-----------STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEe-----------CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 58899998743 2224679999999999999999999999999999999999987 5699999998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~ 725 (1174)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+ ..++.++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988775 99999987521 1111 1223344444432 223334433 357
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ....+|+++++. +|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999997 45554 4899999999864 345688888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=343.28 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=158.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ..++++|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 78899988531 113579999999999999999999999999999999999987 6799999998
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH---HHHHcCCCC-cccccccCCCCCCCCHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE---VLQTIELDG-IKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l~~-~~~~~~~~~~~~~LSgG 729 (1174)
.++||+|++. ++.+||+||+.++... ..+ ..+.+.+ +.+.+++.+ ..++..+.+ +.+||||
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIGEK-GVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCCCHH
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhccccccccccCC-CCCCCHH
Confidence 2799999976 4689999999875321 111 1111111 122233221 122233332 3579999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK---NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|+++++. +|+++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~-~G~i~ 207 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMS-GGKIS 207 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEe-CCEEE
Confidence 9999999999999999999999999999999999999995 443 48999999999863 3 5688888886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 208 ~~g~~~~ 214 (237)
T 2cbz_A 208 EMGSYQE 214 (237)
T ss_dssp EEECHHH
T ss_pred EeCCHHH
Confidence 9998643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=368.85 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=175.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.+. .+++.+|+||||+|++||+++|+||||||||||||+|+|..+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 3589999998542 234679999999999999999999999999999999999874 58999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC------CC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL------PG 722 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~ 722 (1174)
+... ..++.+|||+|++.+++ +||+||+.+.. ... .++++++++.++|.+..++.... ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 7542 24577999999998886 69999996321 111 34577889999998766655321 11
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|. +
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~-~ 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE-E 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-T
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-C
Confidence 13499999999999999999999999999999999999999999999864 4899999999964 456688888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|+++..|++++
T Consensus 229 G~i~~~g~~~e 239 (390)
T 3gd7_A 229 NKVRQYDSILE 239 (390)
T ss_dssp TEEEEESSHHH
T ss_pred CEEEEECCHHH
Confidence 99999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=418.84 Aligned_cols=216 Identities=27% Similarity=0.382 Sum_probs=182.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||+|.++. .+++++|+|+|++|++||.+||+||||||||||+++|.|.++ |.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~----------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPS----------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSS----------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CcEEEEEeeeeCCC----------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCcc
Confidence 35999999996532 134689999999999999999999999999999999999987 679999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+|+.++||+|++.++ +.||+|||.|+.. ..+. +++.++++..+ |++..||.+|+.
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred chhccHHHHhhcccccCCcceee-CCchhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCC
Confidence 765 34677899999998775 5799999998731 2222 23444444443 456789999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++||||++++|+||+||||||+||+.+++.+.+.|+++.+ |+|+|+++|+++ ....+|++++|.
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~- 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCK- 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEE-
T ss_pred CC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEee-
Confidence 76 5999999999999999999999999999999999999999999999864 899999999986 467899999986
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++++.|+.++.
T Consensus 627 ~G~ive~Gth~eL 639 (1321)
T 4f4c_A 627 NGQVVEVGDHRAL 639 (1321)
T ss_dssp TTEEEEEECHHHH
T ss_pred CCeeeccCCHHHH
Confidence 5999999998653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=394.50 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=176.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++. .+++++|+|+||++++||++||+||||||||||+++|+|..+ |.+|+|.+||++
T Consensus 386 g~i~~~~v~~~y~~----------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS----------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSS----------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC----------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 35999999985421 123579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHH-----HHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFV-----NEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+.. ...++.+|||+|++.+++ .||+||+.++.. ..+.++..+.. ++.++ .+.+..|+.+|+.+.
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~ 525 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGERGA 525 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSSSC
T ss_pred HHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccCCCC
Confidence 754 345677999999998875 499999998732 12222222111 22232 244567888887664
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||++|||||+++|+||+||||||+||+.+++.+.+.++++. +|+|+|+++|+++ ....+|+++++. +|
T Consensus 526 -~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~-~G 600 (1284)
T 3g5u_A 526 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD-GG 600 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS-SS
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-CC
Confidence 699999999999999999999999999999999999999999998875 4999999999874 456688888886 69
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
++++.|++++.
T Consensus 601 ~i~~~g~~~~l 611 (1284)
T 3g5u_A 601 VIVEQGNHDEL 611 (1284)
T ss_dssp CCCCEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=335.57 Aligned_cols=197 Identities=22% Similarity=0.402 Sum_probs=148.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+++|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 4788888762 2469999999999999999999999999999999999987 6799999988
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-------ccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-------KDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~~~~ 725 (1174)
.++|++|++.+++ .||+||+. +. . .... .+++.++.+++.+. .++.++.. ...
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 3799999988877 49999997 32 1 1111 12334444444322 23333332 347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ ....+|+++++. +|+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~-~G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEE-CCe
Confidence 9999999999999999999999999999999999999999974 5554 4899999999864 446689988886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|++++
T Consensus 236 i~~~g~~~~ 244 (290)
T 2bbs_A 236 SYFYGTFSE 244 (290)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 999998754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=330.14 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=135.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHH---------------------HHHhCCCCCC--e---EEEEEEECCee
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM---------------------DVLSGRKTGG--I---IEGDIRIGGYP 651 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl---------------------~~l~g~~~~~--~---~~G~i~~~g~~ 651 (1174)
++.+|+||||+|++||+++|+||||||||||+ +++.|...++ . ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999997 6776654421 1 14567777765
Q ss_pred CCcccccceEEEEccCCC-------------------CCCCCCHHHHHHHHHhhccCCCCCHHHHH------HHHHHHHH
Q 001048 652 KVQHTFARISGYCEQNDI-------------------HSPNITVEESIVFSAWLRLSTQIDSKTKA------EFVNEVLQ 706 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~ 706 (1174)
... ..++.+++|+|... .++.+||+||+.+...+..... ...... ....++++
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 432 12233455555432 2357899999987533221110 000000 01123578
Q ss_pred HcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 001048 707 TIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783 (1174)
Q Consensus 707 ~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 783 (1174)
.+||.+. .|+.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8898764 466654 699999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 784 QPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 784 ~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
++ +....+|++++|. ++|++++.|++++
T Consensus 263 d~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 263 DE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp CH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CH--HHHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 86 4566789988882 4699999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-31 Score=322.47 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=144.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCcc-----cccceEEEEc
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI---------RIGGYPKVQH-----TFARISGYCE 665 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 665 (1174)
.+|+|+| ++++||+++|+||||||||||||+|+|..+ |.+|++ .++|.++... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 999999999999999999999999999876 346764 3456543210 1123468888
Q ss_pred cCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|.....+ ..||.||+... .. .++++++++.+||.+..|+.++ +|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8643222 24999998531 10 1346789999999988887764 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 99999999999999999999999999999877999999999864 4556778888875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-31 Score=317.98 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=144.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCc-----ccccceEEEEc
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI---------RIGGYPKVQ-----HTFARISGYCE 665 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~-----~~~~~~~~~v~ 665 (1174)
.+|+|+| +|++||+++|+||||||||||+|+|+|..+ |.+|++ .++|.+... ...+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 999999999999999999999999999876 346764 345654321 01123468898
Q ss_pred cCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|+....+ ..|+.|++... . ..++++++++.+|+.+..++.++ +|||||||||+|||||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8744333 24899987531 0 01346789999999888777764 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+|++|||||||++||+.++..+.+.|++++++|.|||++||+++ .+...+|+++++.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~ 232 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVY 232 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEc
Confidence 99999999999999999999999999999878999999999865 5666788888885
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=317.79 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=156.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+...|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 45566777653 24579999999999999999999999999999999995 222 44432
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++|++|+. .+++.+||.||+.+ .. . .. .++++++++.+|+. +..++.++ +|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 11 12368999874 67789999999975 11 1 11 45688899999995 56666654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++ .|+|+|++||+++ .+.+.+|+++++. +|+++ +.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~-~G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYE-GLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEE-CCeeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999864 5667788888886 58986 688
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 629 ~~~e 632 (986)
T 2iw3_A 629 NFTE 632 (986)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=297.32 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=132.3
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE-----------EECCeeCCcc-----cccceEEEEccC----C
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI-----------RIGGYPKVQH-----TFARISGYCEQN----D 668 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~Q~----~ 668 (1174)
+++||++||+||||||||||+|+|+|..+ |.+|+| .++|.++... .....+....|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 46999999999999999999999999877 457877 5666554210 001122333333 2
Q ss_pred CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 669 IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 669 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+ ...|++|++.-. . ..++++++++.+++.+..|+.++ .|||||||||+|||||+.+|++|+
T Consensus 100 ~~-~~~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KF-LKGTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TT-CCSBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hh-ccCcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22 335888866421 0 11246788999999988888764 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++. +|.
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~-~~~ 214 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIY-GES 214 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEE-EET
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEec-CCc
Confidence 9999999999999999999999976 999999999975 5666777777775 443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-28 Score=292.65 Aligned_cols=188 Identities=21% Similarity=0.318 Sum_probs=138.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCc---ccccce--EEE
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQ---HTFARI--SGY 663 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 663 (1174)
..|++++ .+++||+++|+||||||||||||+|+|..+ |.+|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 4677777 689999999999999999999999999887 4567762 23322110 000111 123
Q ss_pred EccCCCC------CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 001048 664 CEQNDIH------SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA 737 (1174)
Q Consensus 664 v~Q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 737 (1174)
.+|.... -+..++.+++.... . ...++++++++.+++.+..|+.++ +|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHH
Confidence 3332111 11235666554310 1 113457889999999988888764 6999999999999
Q ss_pred HHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 738 VELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 738 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|+++++. +|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999975 5667788888885 455444
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-28 Score=284.15 Aligned_cols=197 Identities=15% Similarity=0.091 Sum_probs=148.0
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-E-EEECCeeCCcccccceEEEEccCCC---CCCCCCH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-D-IRIGGYPKVQHTFARISGYCEQNDI---HSPNITV 676 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~Q~~~---~~~~lTv 676 (1174)
+.++|+++++||+++|+||||||||||+|+|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 347999999999999999999999999999999886 5689 8 999982 2456899999874 4456899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH--hhcCCcE----EEEe
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMD 750 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a--l~~~p~i----lllD 750 (1174)
+||+ |+....... . ..+++.++++.+|+.+..+ ..+|||||||||+|||+ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 653321110 0 1123455677778776554 23699999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC--H---HHHHHhcc-----eeEEecCcEEEEEcCCCccc----
Q 001048 751 E-PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS--I---DIFEAFDD-----LVLMKNGGRIIYFGPLGQHS---- 815 (1174)
Q Consensus 751 E-PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~~~~~~d~-----~~~l~~~G~~v~~G~~~~~~---- 815 (1174)
| ||++||+. ...+.+++++ .|+|+|+++|+.+ . ...+.+|+ +++|.++|+++ .|++++..
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 5445544443 3789999999976 2 34467788 88886368898 88875431
Q ss_pred hhhhhhhhh
Q 001048 816 CKVIEYFEC 824 (1174)
Q Consensus 816 ~~~~~~f~~ 824 (1174)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 234566643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-25 Score=259.11 Aligned_cols=205 Identities=17% Similarity=0.194 Sum_probs=142.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC------------------------------------CeEE
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG------------------------------------GIIE 642 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~------------------------------------~~~~ 642 (1174)
..+++++|+++.+| +++|+|||||||||||++|.+...+ .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 9999999999999999999664321 0126
Q ss_pred EEEEECCeeCCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhcc-----------------------CCCCC--
Q 001048 643 GDIRIGGYPKVQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAWLRL-----------------------STQID-- 693 (1174)
Q Consensus 643 G~i~~~g~~~~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~~-- 693 (1174)
|++.+||++..... . +..+++++|++.++. .+..+...|...... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88999999875421 2 234799999876654 355555444221100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCCcc----------------cc---cccCC-
Q 001048 694 --------------------------------SKTKAEFVNEVLQTIELDGIK----------------DS---LVGLP- 721 (1174)
Q Consensus 694 --------------------------------~~~~~~~~~~~l~~l~l~~~~----------------~~---~~~~~- 721 (1174)
.....+.+++.++.+++.+.. +. .+...
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000112344555556554310 00 11110
Q ss_pred -----CCCC-CCHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 722 -----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 722 -----~~~~-LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
..+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 0111 6999999999999999999 9999999999999999999999999998 599999999986 567788
Q ss_pred cceeEE----ecCcEEEEEc
Q 001048 794 DDLVLM----KNGGRIIYFG 809 (1174)
Q Consensus 794 d~~~~l----~~~G~~v~~G 809 (1174)
|+++++ . +|+++...
T Consensus 363 d~i~~l~k~~~-~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVE-DGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEE-TTEEEEEE
T ss_pred CeEEEEEEecc-CCceEEEE
Confidence 988888 5 47877553
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-26 Score=245.29 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=100.8
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+|+|+ ++||+++|+||||||||||+++|+|. + |.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 346799996 89999999999999999999999998 6 45677632111111123456789999975
Q ss_pred HHHH-HHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 677 EESI-VFSAWL--RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 677 ~e~l-~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+ .+.... ....... .++++++++. + + ||||||+|||||+.+|++|||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp ----CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4555 231100 0000001 1234455543 2 2 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+| ++..+.+.|+++ ++|+||| +||+++
T Consensus 133 s~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 133 NT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred cc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99 888999999988 6689999 999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-24 Score=219.97 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=99.4
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC-CCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS-PNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~-~~lTv~e~l~~ 682 (1174)
||||++++||+++|+||||||||||+|++.+... . +++. ...|+++|++... ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISSD--------FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEHH--------HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------EccH--------HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764221 1 1110 1126677764211 0011111111
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH---
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 759 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~--- 759 (1174)
......+ ..+.....|.. ...|||||||++|||+++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~~~-~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSKRL-QLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHHHH-HTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHHHH-hCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111222 23443333322 237999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 760 -------------AAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 760 -------------~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
....+.+.|++++++|.|+|++||++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 55888999998887799999999985
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-23 Score=231.97 Aligned_cols=140 Identities=21% Similarity=0.275 Sum_probs=116.9
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|..+| .+|.+.+... ...+.+..++++++|+.+||.+.+|..+++ |||||||||+|||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVaIAr 176 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIAR 176 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTT-----SCHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 34666777666 3566555422 123455567899999999999999998876 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||+.+|+||+|||||||||+.++..+++.|+++.+..|.|+|+..|.. ..+.+++|||++|.+|++++.|++++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999877799999877644 4667889999999999999999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=230.09 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=73.7
Q ss_pred CCCCCHHHHHHHHHHHHhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~--~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR--EFSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH--HHHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch--HHHHhCCEE
Confidence 3469999999999999999 79999999999999999999999999999987899999999986 456778999
Q ss_pred eEEecCcEEEE
Q 001048 797 VLMKNGGRIIY 807 (1174)
Q Consensus 797 ~~l~~~G~~v~ 807 (1174)
+++. +|+++.
T Consensus 355 ~~l~-~G~i~~ 364 (365)
T 3qf7_A 355 LRIT-GGVVVN 364 (365)
T ss_dssp EEEE-TTEEC-
T ss_pred EEEE-CCEEEe
Confidence 8886 588864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=228.66 Aligned_cols=86 Identities=24% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce--e
Q 001048 724 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL--V 797 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~--~ 797 (1174)
..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.|+|++||++ ++.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999985 489999999996 456778865 6
Q ss_pred EEecCcEEEEEcCCC
Q 001048 798 LMKNGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~ 812 (1174)
++.+|...+.....+
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 776655666555543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-22 Score=221.58 Aligned_cols=139 Identities=24% Similarity=0.253 Sum_probs=115.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|+.||. +|.+.+.... ..+.+..++++++++.+||++.+|..+++ |||||||||+||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iA 155 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 155 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 456778887773 3555444221 22344556799999999999999998866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. .+.+++|+|++|.+|++++.|++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999997334899998877654 56688999999999999999998764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-24 Score=252.14 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=135.3
Q ss_pred ccccccceeEEeCCe--------------------EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccccc
Q 001048 599 LQLLSDITGTFRPGI--------------------LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge--------------------~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 658 (1174)
+.+|++||+++++|| ++||+||||||||||+|+|+|..+ +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 468999999999999 999999999999999999999876 45799999887643 1
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHH
Q 001048 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE--QRKRLTI 736 (1174)
Q Consensus 659 ~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~i 736 (1174)
.++++|++ .++.+|+.||+.++. . .+.+++.++.+++.+.. ... .|||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHH
Confidence 17899975 567889999875531 1 12367788888887653 222 28999 9999999
Q ss_pred HHHhhc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCCH-HHHHHhcce
Q 001048 737 AVELVA----------NPSIIFMDEPTSGLDARAAATVMRAVKNVV-----ETG----RTVVCTIHQPSI-DIFEAFDDL 796 (1174)
Q Consensus 737 a~al~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tvi~~~H~~~~-~~~~~~d~~ 796 (1174)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .++++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 322 678899998752 255566655
Q ss_pred e
Q 001048 797 V 797 (1174)
Q Consensus 797 ~ 797 (1174)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=213.50 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=112.9
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||+
T Consensus 98 ~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAr 172 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHH
T ss_pred HhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 3556777666 36666665421 12233456789999999999999988866 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|+|++|.+|++++.|++++.
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 88999987754 456678999999999999999987654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=211.84 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=112.9
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhhh-cc-chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAISA-EG-LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~~-~~-~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
.|+..|+.||. ++.+.+..... .+ .+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 68 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALV 142 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHHT
T ss_pred hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 34567777763 56666653211 11 12245789999999999999998866 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|++|+|||||+|||+.++..+++.|+++++..|+|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999765588999887754 456788999999999999999987654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=215.45 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=112.9
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh-----hccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS-----AEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+. .|..+++ |||||||||+||
T Consensus 91 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGq~qRv~lA 165 (262)
T 1b0u_A 91 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIA 165 (262)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHH
T ss_pred HhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 4566777666 36666665421 1123345678999999999998 8988866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|+|++|.+|++++.|++++.
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999764 88999887754 456678999999999999999987644
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=219.95 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||||+.+|+||+||||
T Consensus 91 l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 91 LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE-----LSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344567777665321 22445567899999999999999998866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++.++++.|+++.+..|.|+|+..|. ..++.+++|||++|++|+++..|++++..
T Consensus 166 ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999988876678999987664 45788999999999999999999986653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-21 Score=214.28 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=112.8
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhhh--ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAISA--EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~~--~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
.++..|+.+| .+|.+.+..... ...+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGG-----CCHHHHHHHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHh
Confidence 3455565555 456666653221 2334456789999999999999998865 9999999999999999
Q ss_pred c------CCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 G------PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~------~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
. +|++|+|||||||||+.++..+++.|+++++..++|+|++.|. ...+.+.+|+|++|.+|++++.|++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999999999999999987666788887664 3456678999999999999999997643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-21 Score=208.68 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=110.4
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-------hccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccchhHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-------AEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+. .|..+++ |||||||||+|
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv~i 156 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAI 156 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-----CCHHHHHHHHH
Confidence 345777666 35666554311 1234445678899999999885 4877755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|++|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. +.+.+|+|++|.+|++++.|+.++
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999998666899999888764 568999999999999999998654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=210.31 Aligned_cols=110 Identities=24% Similarity=0.287 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|..+++ |||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++. |
T Consensus 130 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g 203 (257)
T 1g6h_A 130 MVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-G 203 (257)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCchhhCCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C
Confidence 345789999999999999998866 9999999999999999999999999999999999999999999999764 8
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|+|++|.+|++++.|++++
T Consensus 204 ~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 89999887664 5678899999999999999998765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=204.94 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=109.0
Q ss_pred hhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+.|| .++.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE-----LSGGEQQRVAIARALA 156 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHH
Confidence 55666665 45666654321 11233456789999999999999998866 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+. . .+.+|++++|.+|+++++|+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~-~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-L-AELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-H-HHhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999865 899999888754 3 489999999999999999963
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=219.51 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=113.9
Q ss_pred CCCCCccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+... ...+.+.+++++++++.+||++..|..+++ |||||||||+|||||+.+|+||+|||
T Consensus 85 ~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhH-----CCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 345666777665432 223455567899999999999999998865 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||||||+.++.++++.|+++.+..|.|+|+..| -..++.+++|||++|.+|+++..|++++..
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999998766899998765 445788999999999999999999986553
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=216.20 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=112.5
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 98 l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 98 LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455567777665321 12344566899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|. ..++.+++|+|++|.+|+++..|++++..
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999987668899987765 35677899999999999999999987653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-21 Score=213.85 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=111.7
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||. +|.+.+...... ...+++++.++..+|.+ ..||.+|+ .+..|||||||||+
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRva 200 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVA 200 (306)
T ss_dssp HHHHHTEEEECSSCCCCSEEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHH
T ss_pred HHHhcceEEEecCCccCcccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHH
Confidence 3467788888884 455665432211 12335677888888765 45788886 34459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|+|+..| +.+++..+|+|++|.+|+++++|++++..
T Consensus 201 iARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH--~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 201 IARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAH--RLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECC--SHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEc--ChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999863 678887654 56667779999999999999999987665
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
.
T Consensus 277 ~ 277 (306)
T 3nh6_A 277 S 277 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=217.12 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=112.8
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 93 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 445567877775422 12344456899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.+ .++.+++|+|++|.+|+++..|++++..
T Consensus 168 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999766688999887754 5678899999999999999999986653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-22 Score=204.79 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=97.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 690 (1174)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + + +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~~~- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--SKF- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--ETT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--hhc-
Confidence 589999999999999999999764 22333322111 2345689999975 222332 1 0 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH-----hhcCCcEEEEeC--CCCCCCHHHHHH
Q 001048 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAT 763 (1174)
Q Consensus 691 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a-----l~~~p~illlDE--PtsgLD~~~~~~ 763 (1174)
. .-.+..+... ..||||||||++||++ |+.+|++++||| ||++||+.....
T Consensus 64 -~----------------~~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -F----------------TSKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CCSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------Cccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0001222222 3699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecC--CCHHHHHHhcceeEEecCcEEEEE
Q 001048 764 VMRAVKNVVETGRTVVCTIHQ--PSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~--~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
+.+.+++ .+.|+|+++|+ ....+...+|+ .+|++++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 9888865 47789999972 12233344454 45777763
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-21 Score=216.86 Aligned_cols=133 Identities=21% Similarity=0.271 Sum_probs=112.0
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 345557777665321 22344556899999999999999988865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|.+|+++..|++++..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999766688999877654 5778899999999999999999886543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-21 Score=216.17 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=112.2
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 344457777776422 12344456899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|++|+++..|++++..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999766688999887754 5677899999999999999999986543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=206.54 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=112.8
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++|| .++.+.+.... ....+..++++++++.+||.+..|..+++ |||||||||+||++
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAra 160 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARA 160 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHH
Confidence 3455666666 36666665321 11223345789999999999999998866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+.+|+||+|||||||||+.++..+++.|+++++ .|+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++..+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999975 588999887754 34566799999999999999998765543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=216.73 Aligned_cols=132 Identities=21% Similarity=0.281 Sum_probs=111.6
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 345557776665321 22344556899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+++.+..|.|+|+..|.. .++.+++|+|++|.+|+++..|++++.
T Consensus 167 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999766688999887754 567889999999999999999987654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=213.84 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCccHHHHHHHhh-hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCc
Q 001048 13 FPDPDVDAYMKAIS-AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 91 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~-~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGL 91 (1174)
.|+.+|.+.+.... ..+..+.++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||||||
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 44457777665321 11111126799999999999999998865 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 92 DSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 92 DS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+.++..+++.|+++.+..|.|+|++.|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999876788999887754 567889999999999999999998654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=209.03 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=113.8
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh---hccchhhhHHHHHHHHhCCc--ccccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS---AEGLENSLQTDYILKILGLD--ICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~---~~~~e~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+.... ..+.+..++++++++.+||. +..|..+++ |||||||||+||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----LSgGq~qRv~lA 150 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIA 150 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGG-----SCHHHHHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhh-----CCHHHHHHHHHH
Confidence 35566776663 4556665422 12233345789999999999 888988865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++. |+|+|++.|.+. .+.+.+|++++|.+|++++.|++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999765 889999888764 4567899999999999999998876543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=215.21 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+|||||
T Consensus 95 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 95 WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp --CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34456766665321 12344456799999999999999998866 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|.+|+++..|++++.
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999876688999877653 567789999999999999999987654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-21 Score=212.07 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=111.0
Q ss_pred hhhhcCCCCCc---------cHHHHHHHhh--------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccch
Q 001048 6 LEKLAGIFPDP---------DVDAYMKAIS--------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 6 ~~~~~~~~~~~---------~v~~~~~~~~--------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkR 68 (1174)
.|+..|+.||. +|.+.+.... ....+..++++++++.+||.+..|..+++ ||||||||
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqR 169 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQR 169 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHH
T ss_pred HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHH
Confidence 34556766652 5666654311 01223345789999999999999998876 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE--EEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA--LISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv--I~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
|+||++|+.+|++|+|||||+|||+.++..+++.|+++++. |+|+ |++.|.+ .++.+.+|+|++|.+|++++.|++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999765 7888 8877765 356688999999999999999986
Q ss_pred ch
Q 001048 147 SY 148 (1174)
Q Consensus 147 ~~ 148 (1174)
++
T Consensus 248 ~~ 249 (279)
T 2ihy_A 248 ED 249 (279)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-24 Score=228.09 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=114.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
...+++| .++++||+++|+||||||||||+|+|+|..+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3567888 6999999999999999999999999999765 22333333232211 12245679999988777777777
Q ss_pred HHHHHHHhhcc---CCCCCHHHHHHHHHHH------HHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 678 ESIVFSAWLRL---STQIDSKTKAEFVNEV------LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 678 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|++........ ....+.++.++++++. ++.+|+.+..+... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76532110000 0012233334444443 33333333333322 2355 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 749 MDEPTSGL----DARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 749 lDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||||+|+ |+..+..+.+.++++.+ .|.|+|+++|+++ ++...+|+++++.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999975 4899999999985 6778899999885544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=204.31 Aligned_cols=135 Identities=18% Similarity=0.254 Sum_probs=110.7
Q ss_pred hhcCCCCC-------ccHHHHHHHhh---hccchhhhHHHHHHHHhC-CcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS---AEGLENSLQTDYILKILG-LDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~---~~~~e~~~~v~~vl~~lg-L~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+.|| .++.+.+.... ....+..++++++++.++ |.+..|..+++ |||||||||+||++|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALM 155 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 34666666 36777765432 122333456889999995 99988888766 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|+||+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999976 588999887754 356788999999999999999987543
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=203.14 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=106.2
Q ss_pred CCccHHHHHHHhhh--------ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeee
Q 001048 14 PDPDVDAYMKAISA--------EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 85 (1174)
Q Consensus 14 ~~~~v~~~~~~~~~--------~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LD 85 (1174)
++.++.+.+..... ...+..++++++++.+||.+..|..+++ |||||||||+||++|+.+|+||+||
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34567676654321 1223345789999999999999988765 9999999999999999999999999
Q ss_pred CCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 86 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 86 EPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|||||||+.++..+++.|+++++..|+|+|++.|.+ ..+.+.+|++++|.+|+ ++.|++++
T Consensus 154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 999999999999999999999765588999887754 35668899999999999 99998654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-20 Score=201.45 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+||. +..|..++. .|||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++ .|
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g 214 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GK 214 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTTT----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SS
T ss_pred HHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 45789999999996 577877642 3999999999999999999999999999999999999999999999864 48
Q ss_pred CEEEEEecCCChhHHhh-hhheeeecCCcEEEeCCcchHHHHHhhCCCC
Q 001048 112 ATALISLLQPAPETFDL-FDDVILMAEGKIVYHGPLSYSCKFFEGCGFR 159 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~l-fD~IivL~~G~vvy~G~~~~~~~yf~~~G~~ 159 (1174)
+|+|++.|.+. .+... +|++++|.+|++++.|++++... .+..||.
T Consensus 215 ~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 215 RSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp CEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred CEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 89999888754 34444 89999999999999999876543 3445443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-22 Score=219.91 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=97.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID 693 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 693 (1174)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.....++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999876 5689999999887554556789999999999999999999998754321 111
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 694 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
. +.+.+.++ ....+... ..||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12223322 22334443 2599999999999999886 999999999999987 456666665
Q ss_pred cCCEEEEEecCC
Q 001048 774 TGRTVVCTIHQP 785 (1174)
Q Consensus 774 ~g~tvi~~~H~~ 785 (1174)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-20 Score=204.01 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=107.1
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhc--c-ch-----hhhHHHHHHHHh--CCcccccccccCCCcccCCccccchh
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAE--G-LE-----NSLQTDYILKIL--GLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~--~-~e-----~~~~v~~vl~~l--gL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.|+..|++||. +|.+.+...... . .+ ....++++++.+ ||.+..+..+++ |||||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~-----LSgGq~QRv 165 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-----LSGGQRQAV 165 (271)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT-----SCHHHHHHH
T ss_pred HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC-----CCHHHHHHH
Confidence 45667777773 566666532111 1 11 112346677777 787777777655 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999986545889999887654 4456999999999999999987655
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 244 ~ 244 (271)
T 2ixe_A 244 M 244 (271)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=200.28 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=110.1
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcC
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGP 78 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~ 78 (1174)
.|+..|+.|| .++.+.+......... .++++++++.+||++..|..+++ |||||||||+||++|+.+
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC-HHHHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCc-HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 4455666665 3566666532211111 45789999999999998888765 999999999999999999
Q ss_pred Cc-------EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 79 TR-------ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 79 P~-------IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+ +|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99 99999999999999999999999999764 88999887654 35568899999999999999998653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-20 Score=201.03 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=108.4
Q ss_pred hhhcC-CCCCc-----cHHHHHHHhhhccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCC
Q 001048 7 EKLAG-IFPDP-----DVDAYMKAISAEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT 79 (1174)
Q Consensus 7 ~~~~~-~~~~~-----~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P 79 (1174)
|+..| ++||. ++.+.+.....-..+..++++++++.+||. +..|..+++ |||||||||+||++|+.+|
T Consensus 73 ~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGG-----SCHHHHHHHHHHHHHHTCC
T ss_pred hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCC
Confidence 45567 77764 566665532211122345789999999999 888888765 9999999999999999999
Q ss_pred cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhh-heeeecCCcEEEeCCcchHH
Q 001048 80 RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD-DVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 80 ~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD-~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+|||||+|||+.++..+++.|+++++ |+|++.|.+ ..+.+.+| ++++|.+|++++.|++++..
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999998642 888877765 45667899 99999999999999876543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-20 Score=199.52 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=92.2
Q ss_pred hhHHHHHHHHhCC-cccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGL-DICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL-~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+|| .+..|..+++ +|||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++ .|
T Consensus 119 ~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g 193 (250)
T 2d2e_A 119 WTKVKKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PN 193 (250)
T ss_dssp HHHHHHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TT
T ss_pred HHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cC
Confidence 4578999999999 5888887753 3999999999999999999999999999999999999999999999865 58
Q ss_pred CEEEEEecCCChhHHhh-hhheeeecCCcEEEeCCcc
Q 001048 112 ATALISLLQPAPETFDL-FDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~l-fD~IivL~~G~vvy~G~~~ 147 (1174)
+|+|++.|.+. .+... +|++++|.+|++++.|+++
T Consensus 194 ~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 194 FGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 89999888754 44455 5999999999999999875
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-21 Score=216.83 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=120.5
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cceEEEEccCCC-CC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TF--ARISGYCEQNDI-HS 671 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~Q~~~-~~ 671 (1174)
++++|+++++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999866 3469999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEE
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 749 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illl 749 (1174)
+.+|++||+.++... ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 889999999886421 110 134566777766666553 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
| ||+|||+..+ ++++.+ .|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999855 345543 48999999994
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-20 Score=200.06 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=107.8
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccc-------cccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADT-------MVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT-------~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+.... . ....++++++++.+||.+..+. .++. ..+.|||||||||+||
T Consensus 81 ~~~~i~~v~Q~~~l~~~tv~enl~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLNRSIIDNISLAN-P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HHHHEEEECSSCCCTTSBHHHHHTTTC-T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHH
T ss_pred HHhcEEEEeCCCccccccHHHHHhccC-C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHH
Confidence 45667877773 5556554321 1 1223467889999999876543 3443 2456999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++. .|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++.
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999984 4889999888765 3456999999999999999987654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-23 Score=232.51 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=116.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|++|++||+++|+||||||||||+++|+|.. +|+| ++|++|++.++. .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHH
Confidence 46999999999999999999999999999999999976 3666 246778776654 58886
Q ss_pred -HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 679 -SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 679 -~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
|+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||| ||||+++|+||| ||+||
T Consensus 172 ~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 TRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp CSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 776531 1111 234555553 444444 2 3699999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhC
Q 001048 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~ 825 (1174)
+.++..+.. .+|+++ ..+.+|++ ++. +|++++.|++++ +..+|..+
T Consensus 226 ~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~~e----l~~~y~~l 271 (305)
T 2v9p_A 226 VQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITDAD----WKSFFVRL 271 (305)
T ss_dssp STTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCHHH----HHHHHHHS
T ss_pred HHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCHHH----HHHHHHHH
Confidence 999988862 188764 35678888 765 699999999743 34555554
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=223.38 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=114.0
Q ss_pred chhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+.||+ ++.+.+...... ...+++++++++..||.+ ..||.+|+. +..||||||||++|
T Consensus 414 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~i 491 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAI 491 (582)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHH
T ss_pred HHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHH
Confidence 456778888874 566666532211 123456888999999875 468889873 45699999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+..|++ ++.+.+|+|++|++|+++++|++++..+
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccH--HHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999863 88999887765 4567899999999999999999876543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=197.45 Aligned_cols=138 Identities=21% Similarity=0.295 Sum_probs=107.3
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+...... ...++++++++.+||.+ ..||.++. ....|||||||||+||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFNETIKYNILYGKLD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIA 167 (260)
T ss_dssp HHTTEEEECSSCCCCSEEHHHHHHTTCTT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHH
T ss_pred HhccEEEEcCCCcccccCHHHHHhccCCC--CCHHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHH
Confidence 45667777763 566666532211 12235677788777654 35666664 3456999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++.+ ++|+|++.|.+.. .+.+|+|++|.+|++++.|++++..
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGG--STTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH--HHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999853 7899998887653 4569999999999999999876543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=221.98 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=112.3
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|+.||+ ++.+.+...... ...+++++++++..||.+ ..||.+|+. +..||||||||++
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVA 490 (582)
T ss_pred HHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHHHHHH
Confidence 3456778888884 344555432101 123456888999998875 457888873 4559999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+..|++ ++.+.+|+|++|++|++++.|++++..
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRL--STIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999853 78998877765 566789999999999999999987654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=197.77 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=109.3
Q ss_pred chhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCccccccc-------ccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTM-------VGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~-------VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+.||. ++.+.+..... .....++++++++.+||.+..+.. ++. ....|||||||||+|
T Consensus 73 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAI 150 (243)
T ss_dssp CCTTTCCEECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHH
T ss_pred HHHhhEEEEcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHH
Confidence 345667887774 45555532211 112234688999999998876543 333 245699999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|++|+.+|++|+|||||||||+.++..+++.|++++ .|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++..
T Consensus 151 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH--HHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999986 3889999888754 44679999999999999999876543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=220.22 Aligned_cols=141 Identities=23% Similarity=0.242 Sum_probs=109.9
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..... ...++++.+.++..++. +..||.+|+ .+..||||||||++
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLS 489 (587)
T ss_dssp HHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHH
T ss_pred HHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHH
Confidence 3457788888884 45555542211 11223455566665554 467889987 34459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .|+|+|+..|.+ ++.+.+|+|++|++|+++++|++++..
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l--~~~~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI--PTALLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH--HHHTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 478999876654 567899999999999999999998765
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 566 ~ 566 (587)
T 3qf4_A 566 E 566 (587)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=216.09 Aligned_cols=109 Identities=28% Similarity=0.433 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 698 AEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 698 ~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
.++++ .++.+||.+. .++.+. .|||||||||+||++|..+| ++|+|||||+|||+.....+.++|++|++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34444 5778899765 566553 69999999999999999999 599999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCcc
Q 001048 775 GRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQH 814 (1174)
Q Consensus 775 g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~~ 814 (1174)
|.|||+++|++ ++.+.+|+++.|. ++|++++.|++++.
T Consensus 431 G~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 431 GNSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred CCEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 99999999986 4667889999884 57999999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=220.91 Aligned_cols=141 Identities=23% Similarity=0.261 Sum_probs=110.9
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..-.. ...++++.+.++..++. +..||.+|+ .+..|||||||||+
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLS 487 (578)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHH
T ss_pred HHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHH
Confidence 3457788888884 55565543211 12234566777777664 467899987 33459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .++|+|+..|.++ +.+.+|+|++|++|+++++|++++..
T Consensus 488 lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999885 3688888766554 56789999999999999999987665
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 564 ~ 564 (578)
T 4a82_A 564 A 564 (578)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-20 Score=210.61 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=104.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
.+++++|+.+++|++++|+||||||||||+|+|+|..++ .+|.|.++|.+.... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 389999999999999999999999999999999998773 579999998642111 1222333332
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 0 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++.+.|+.+...+.|+|+|+|+++ ..+.+|+++.+.++
T Consensus 253 ----e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ----EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ----HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356777777654458999999976 57788999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-20 Score=210.71 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=109.7
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccC------CCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGD------PMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~------~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|+.+|. +|.+.+. .......++++++++.+||.+..+...+. +..+.|||||||||+|||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~---~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHC---TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhh---hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 46777877773 4555543 12233455789999999998876655432 123349999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+.+|+||+|||||||||+.++..+++.|+++. .++|+|++.|+. +...++|||++|++|++++.|++++...
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864 467888877764 5667899999999999999999876543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-23 Score=220.84 Aligned_cols=178 Identities=8% Similarity=0.006 Sum_probs=111.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~l 674 (1174)
..-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+.... ..++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 357999999999999999999999999999999999762 77888 6654221 1235678999986554433
Q ss_pred CH-HHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH-----HHHhhcCCcEE
Q 001048 675 TV-EESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTI-----AVELVANPSII 747 (1174)
Q Consensus 675 Tv-~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~i-----a~al~~~p~il 747 (1174)
+. .+++.+. ..... ...+ .+.++++++...+ .... ..+|||||||++| +++++.+|+++
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 20 1111100 00000 0011 1235666664332 1221 2599999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-------cCCEEEEEecCCCHHHHHHhccee
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVE-------TGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|||||+++|..+...+.+.|+++.+ .+.+.|+++|+++ +.+..+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 99999999999999999998887643 3456677777654 4555555544
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=221.65 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=110.5
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..... ...++++++.++..++. +..||.+|+ .+..|||||||||+
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLA 501 (598)
T ss_dssp HHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHH
T ss_pred HHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHH
Confidence 3457788888884 45566643211 11223466677666654 356788876 23459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .|+|+|+..|+++ +.+.+|+|++|++|+++++|++++..
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN--TIKNADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT--HHHHCSEEEEECSSSEEECSCHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999985 4889998877665 56779999999999999999987655
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 578 ~ 578 (598)
T 3qf4_B 578 Q 578 (598)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-20 Score=214.19 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=121.2
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cceEEEEccCCC-CCC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TF--ARISGYCEQNDI-HSP 672 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~Q~~~-~~~ 672 (1174)
+++|+++++|++++|+||||||||||++.|+|..+ +.+|+|.++|.+.... .+ ++.++|++|++. +.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46888999999999999999999999999999866 3469999999876431 11 345899999988 888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEe
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 750 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlD 750 (1174)
..|++||+.++... ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 89999999886421 111 124566777766666553 599 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 751 EPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 44443 48999999994
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-20 Score=219.31 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=137.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc--------ccccceEEEEcc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ--------HTFARISGYCEQ 666 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~Q 666 (1174)
+..+|+++ +++.+||+++|+||||||||||+++|+|..+ +..|.|.++|+ +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35799999 9999999999999999999999999999876 45899999998 3322 124567899999
Q ss_pred C-CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 667 N-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 667 ~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
+ +..++.+|+.+|+.+.+...... . +++ ....|. ...+|+|| |||+|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 55567889999998765432100 0 000 011122 23599999 999999 88998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVE---T-GR-----TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
+ |+|||+.+...+.++++++.+ + |+ ||++++||++ ...+|+++.+. +|+++..|++
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Ivl~~~~ 339 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIVLSRRL 339 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEEECHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEEEeCCH
Confidence 8 999999999999999999866 3 64 9999999986 46678888887 5999998875
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=195.34 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 725 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 6788
Q ss_pred eeEEecCcEEEEEcCCCc
Q 001048 796 LVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~~ 813 (1174)
++.+. +|+++..|++++
T Consensus 337 i~~l~-~G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEEM 353 (359)
T ss_dssp EEEEE-TTEEEECCCTTT
T ss_pred EEEEE-CCEEEecCCHHH
Confidence 88876 599999999854
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=188.56 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.3
Q ss_pred CCCCCHHHHH------HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrq------Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 3569999999 67888899999999999999999999999999999999877789999999985 567888998
Q ss_pred eEEe
Q 001048 797 VLMK 800 (1174)
Q Consensus 797 ~~l~ 800 (1174)
+.+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-18 Score=216.29 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=122.2
Q ss_pred HHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCC-C-H---HHHHHH
Q 001048 626 TTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI-D-S---KTKAEF 700 (1174)
Q Consensus 626 STLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~---~~~~~~ 700 (1174)
+|...|..++.. +..|+|.++|+++.. +..+|+.|++.|...+...... . . ....+.
T Consensus 382 ~~C~~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 382 RTCSVCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp EECTTTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred ccchhcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 445555555665 447899999987532 2346888888875443222110 0 0 011123
Q ss_pred HHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 701 VNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 701 ~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
..+.+..+||.+. .|+.++ +|||||||||+|||+|+++|+ +|+|||||+|||+.....+++.|++++++|.|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 4467778898764 455543 699999999999999999887 99999999999999999999999999888999
Q ss_pred EEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 778 VVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 778 vi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
||+++|++ +....+|+++.|. ++|++++.|++++
T Consensus 519 vivVtHd~--~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 519 VIVVEHDE--EVIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEECCCH--HHHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEeCCH--HHHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999985 5567789998882 5799999999865
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=183.10 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=94.5
Q ss_pred CccHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 15 DPDVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 15 ~~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
..++.+.+........ +..+++++.+++.+ ..+|.++. ....|||||||||+||++|+.+|+||+||||
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CcCHHHHhhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3466666653221111 23445555555432 12344543 3456999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHH---HHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLK---HLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~---~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+ ++. .|+|+|++.|.+.. .+.+|++++|.+|++++.|++++.
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY--LPQVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT--GGGSSEEEEEETTEEEEEECHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH--HHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999995 333 37899999888764 357999999999999999987654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=178.00 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=95.9
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-hc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-AE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
|+..|+.|| .++.+.+.... .. +.+ .++++++++.+||++. +..+++ |||||||||+||++|+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~-----LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLL 149 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhh-----CCHHHHHHHHHHHHHH
Confidence 455566555 46666665321 11 222 4578999999999987 777654 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeec
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMA 136 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~ 136 (1174)
.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+. .+...+|+|++++
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999998754 789999888765 4667788877653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=195.90 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=116.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
..+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+.......+.+..+.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 468999999999999999999999999999999999654 2235 56543333222222222233333321 2333
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH-HHHHHHHHHhhcCCcEEEEeCCCC--
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqRv~ia~al~~~p~illlDEPts-- 754 (1174)
+++..+. + +.++..+.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4444321 1 1122233344444322221 1111 12489998 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCCC-H--------------------HHHHHhcceeEEecCcEE
Q 001048 755 -G---LDA-RAAATVMRAVKNVVET-GRTVVCTIHQPS-I--------------------DIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 755 -g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~~~~l~~~G~~ 805 (1174)
+ +|. .....+.+.|++++++ |.|||+++|+.. . .+.+.+|++++|.+ |+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 5 455 6678899999999865 999999999952 1 45667898888875 553
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-20 Score=205.38 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=95.7
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcc
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRL 688 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~ 688 (1174)
+++|+++||+||||||||||+++|+|..++ . +|. +.+++|+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999997653 1 221 357999999988887 99999864211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 689 STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
.+.......+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11122223455677888887 44444444 26999999999999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=202.62 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCC-CHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 724 NGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 724 ~~L-SgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++ ++...+|+++++.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~--~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA--QIAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH--HHHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 89999999986 5667799999986
Q ss_pred c
Q 001048 801 N 801 (1174)
Q Consensus 801 ~ 801 (1174)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=180.34 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=94.1
Q ss_pred cHHHHHHHhhhccchhhhHHHHHHHHhCCcccc-------cccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC
Q 001048 17 DVDAYMKAISAEGLENSLQTDYILKILGLDICA-------DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 89 (1174)
Q Consensus 17 ~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~-------dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS 89 (1174)
++.+.+..... .. ...++++++.++|.+.. +|.++. ....|||||||||+||++|+.+|++|+||||||
T Consensus 84 tv~enl~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 84 TIKENIIFGVS-YD--EYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp CHHHHHHTTSC-CC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred CHHHHhhccCC-cC--hHHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 67776653211 11 12345566666665433 344543 235699999999999999999999999999999
Q ss_pred CcChHHHHHHHHH-HHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 90 GLDSSTTFQIVSF-LKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 90 GLDS~sa~~v~~~-L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||+.++..+++. ++++. .++|+|++.|.+. ..+.+|++++|.+|++++.|++++.
T Consensus 160 ~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH--HHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999997 45553 3789999888753 3456999999999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=199.96 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHhhccCCC---CCH---HHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 672 PNITVEESIVFSAWLRLSTQ---IDS---KTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
..+||.|++.|...+.++.. +.. ++..+++ +.++.+||... .|+.++ +|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766543210 000 2233444 35788999865 566654 69999999999999999985
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCcc
Q 001048 745 --SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQH 814 (1174)
Q Consensus 745 --~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~~ 814 (1174)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ +....+|++++|. ++|++++.|++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 89999999999999999999999999988899999999986 4567889999983 58999999998764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-18 Score=189.25 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=103.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3568999999999999999999999999999999999854 222222 2356789999985 6678999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
.|++.+....... ........+.+.+.++.+ .+..+..+ ..+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998775322110 001111122334444433 23344443 3699999999988 6889999999999998888
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
|.. +.++ .+.+|++++|+. ..+.+...+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r 174 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD-VRLSRRVLR 174 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH-HHHHHHHHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH-HHHHHHHHH
Confidence 764 2222 378999999962 234444443
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-17 Score=207.90 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=109.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHH--------hCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL--------SGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI 669 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~ 669 (1174)
++.+++|+++++++|++++|+||||||||||||++ .|..- |..+.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--cccccc---------------chHH---HH
Confidence 45799999999999999999999999999999999 44322 111110 0100 00
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh--hcCCcEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSII 747 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al--~~~p~il 747 (1174)
++..+|+. |... +++|+|++++..+|+++ +++|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l~-----~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQL-----KGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhHH-----HhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 01111111 1111 25888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 748 FMDEPTSGLDARAAATV-MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||||+|+|+.....+ ...++.+++ .|.|+|++||+. ++.+.+|++..+.+ |++...++.+
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 99999999999999888 667778876 499999999984 56788899888875 8999988764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-17 Score=181.15 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=93.3
Q ss_pred cHHHHHHHhhhccchhhhHHHHHHHHhCCcccc-------cccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC
Q 001048 17 DVDAYMKAISAEGLENSLQTDYILKILGLDICA-------DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 89 (1174)
Q Consensus 17 ~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~-------dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS 89 (1174)
++.+.+. . .... ...++++++.++|.+.. +|.++. ....|||||||||+||++|+.+|++|+||||||
T Consensus 114 tv~enl~-~-~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 114 TIKENII-G-VSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp BHHHHHH-T-TCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cHHHHhh-C-cccc--hHHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 6777765 2 1111 12345566777765432 344543 234599999999999999999999999999999
Q ss_pred CcChHHHHHHHHHH-HHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 90 GLDSSTTFQIVSFL-KHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 90 GLDS~sa~~v~~~L-~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+.++..+++.+ +++. .|+|+|++.|.+ +..+.+|++++|.+|++++.|++++..
T Consensus 189 ~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~--~~~~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHSSEEEEEETTEEEEEECHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH--HHHHcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999974 5553 378999988875 344679999999999999999986653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=195.03 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=114.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW 685 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~ 685 (1174)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 449999999999999999999999999996542 121 12456666531 12333321
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH-----H
Q 001048 686 LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 760 (1174)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~-----~ 760 (1174)
+. ..+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555444443 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCC---------HHHHHHhcceeEEecCcE
Q 001048 761 AATVMRAVKNVVETGRTVVCTIHQPS---------IDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 761 ~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~~~~~~d~~~~l~~~G~ 804 (1174)
+..+.++++.+++.|.|+|+++|+.. ..+...+|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999999888999999999971 245567888888864 55
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-18 Score=191.62 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=124.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc----------ccccceEEEEccC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----------HTFARISGYCEQN 667 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~Q~ 667 (1174)
+..+|+++ ++|.+||+++|+||||||||||+++|+|..+ +..|.|.+.|++..+ ..+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 35799999 9999999999999999999999999999877 458999998865211 1134557788875
Q ss_pred CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 668 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
+. ...+.+..... .....+.....+ .|...-...+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 23333221100 000111111111 11110001124699999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVE--TGR-----TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|+|||+.....+.++++++.+ +|. ||++++|+.+ ...+|+++.+. +|+++..|++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 999999999999999999874 477 9999999986 35678888887 5999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-19 Score=216.81 Aligned_cols=168 Identities=20% Similarity=0.184 Sum_probs=114.1
Q ss_pred ccccccccee-EEeCCeEEEEecCCCCCHHHHHHH--HhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCC
Q 001048 598 RLQLLSDITG-TFRPGILTALMGVSGAGKTTLMDV--LSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~-~i~~Ge~~~l~G~sGsGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~ 672 (1174)
+.++|+++|+ .+++||+++|+||||||||||+++ ++|..+ +.+|.|+++|++... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 688765 347999999987322 122345789998743211
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
|+.+ .... . .. ...++++.+++.+..+... +.|||| +|++++||||
T Consensus 102 ------~l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 ------KLFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp ------SEEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred ------cEEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1100 0000 0 00 0001111222222222221 134554 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH--------HHHHhcceeEEec
Q 001048 753 TS-----GLDARAAATVMRAVKNVVETGRTVVCTIHQPSID--------IFEAFDDLVLMKN 801 (1174)
Q Consensus 753 ts-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------~~~~~d~~~~l~~ 801 (1174)
|+ +||+..+..+.++++++++.|+|||+++|+++.. ....+|++++|.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999998631 2344899998875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-17 Score=179.08 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=96.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+++| +++|++++|+||||||||||+++|+|..+ +. +|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 5899999 99999999999999999999999999765 44 799999887642 223321100
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
.. . +.+++.. ..+ |++||++|..+|+++++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0122211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+...+ ++. ++.|.+|++++|+.+ ....+|+++.+.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 333 356999999999975 567788887774
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=156.82 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHH------HHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia------~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+..||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 357999999999876 899999999999999999999999999999999877799999999986 456788998
Q ss_pred eEEe
Q 001048 797 VLMK 800 (1174)
Q Consensus 797 ~~l~ 800 (1174)
+++.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-17 Score=211.17 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccccccceeEEeC-------CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRP-------GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~-------Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~ 670 (1174)
++.+++|+++.+++ |++++|+||||||||||||++ |... + .++..+||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC-
Confidence 35799999999987 999999999999999999999 8654 1 1122239999752
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
.+||.|++.. + +|+.+..+. +...+|+|+++ +++|++++++|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4566655410 1 111111111 11247777664 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEecCCCHHHHHH-hcceeEEecCcEEE--EEcCC
Q 001048 751 EPTSGLDARAA-ATVMRAVKNVVET-GRTVVCTIHQPSIDIFEA-FDDLVLMKNGGRII--YFGPL 811 (1174)
Q Consensus 751 EPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~~v--~~G~~ 811 (1174)
|||+|+|+... ..+++.|+.++++ |.++|++||++ ++... +|++.++ + |++. +.|++
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~--el~~~~~d~~~v~-~-g~~~~~~~~~~ 937 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH--SLVEDYSQNVAVR-L-GHMACMVENEC 937 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH--HHHHHTSSCSSEE-E-EEEEEC-----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHhCCcceee-c-CeEEEEEecCc
Confidence 99999999985 5578899999876 99999999985 44544 5655554 3 7887 45554
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-17 Score=206.12 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=98.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|+++++|++++|+||||||||||||++++.... ... |...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 46799999999999999999999999999999999763210 000 1000000 0011111 1111111111
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
+++ +. +...+|+|++|++.|+++ +++|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 113589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCCEEEEEecCCCHHHHHHhcce
Q 001048 758 ARAAATVM-RAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 758 ~~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+.....+. ..++.+++ .|.|+|++||++ ++.+.+|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 99999987 77777865 599999999985 455666654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-17 Score=183.33 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=104.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------c--cceEEEEccCCCCCCCCCHHHHHH
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------F--ARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~--~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+|++++|+||||||||||+++|+|..++ .+|+|.++|.+..... + ++.++|++|++...|..|++||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999998763 4799999998764211 1 235799999988888899999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
++..-. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653110 00 012222333222211 2456669999999999999994433 4444444
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCC
Q 001048 762 ATVMRAVKNVVET-GRTVVCTIHQP 785 (1174)
Q Consensus 762 ~~i~~~l~~l~~~-g~tvi~~~H~~ 785 (1174)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5566777777654 89999999974
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-18 Score=189.45 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=86.3
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC-CCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+++.+++|++|+| +|+||||+|||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3567999999998 99999999999999999996 44 4578 8888876533222345789999888878899
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.|+..++..... .+.....++.+. +..+..+ +++|||||||+.+||+++ ++++||||++
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9999887643210 000011111111 1123333 369999999999999885 9999999984
Q ss_pred -CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 001048 756 -LDARAAATVMRAVKNVVET-GRTVVCTIHQPS 786 (1174)
Q Consensus 756 -LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 786 (1174)
||+... +.++++.++ +.++|++.||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 566666543 789999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-18 Score=183.70 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=111.0
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESIVFSAWL 686 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~ 686 (1174)
.++|++++|+||||||||||+++|+|... + .++|++|++.++ ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999999754 1 368999987665 5679998865421
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH----HHHHHHHHHhhcCCcEEEEeCCCCC-------
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 755 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqRv~ia~al~~~p~illlDEPtsg------- 755 (1174)
..+ .....+.+.+.++.+++.+..+... ..+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 1112344566777777765544432 3589996 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCCEEEEEecCC
Q 001048 756 LDARAAATVMRAVKNV-VETGRTVVCTIHQP 785 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~ 785 (1174)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999886 45699999999963
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=151.00 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.0
Q ss_pred cccCCccccchhHHH------HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhh
Q 001048 58 RRGVSGGQKKRLTTG------ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDD 131 (1174)
Q Consensus 58 ~rGLSGGqKkRvSIA------~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~ 131 (1174)
...||||||||++|| ++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|+|++.|.+ +..+.+|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhCCE
Confidence 345999999999876 899999999999999999999999999999999865 478999888886 57789999
Q ss_pred eeeec
Q 001048 132 VILMA 136 (1174)
Q Consensus 132 IivL~ 136 (1174)
+++|.
T Consensus 132 ii~l~ 136 (148)
T 1f2t_B 132 VIRIS 136 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-16 Score=196.85 Aligned_cols=167 Identities=15% Similarity=0.178 Sum_probs=109.9
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC------cccccceEEEEccCCCCCCCCCHHHH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV------QHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
+++++. +||+|||||||||||++|+|...+ +.+|.|+++|.++. ...+++.++|++|++.+++.+||+||
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 355554 999999999999999999998652 25899999998742 12456789999999999999999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC------C
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------T 753 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP------t 753 (1174)
+.++...... .+ .++| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAG---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHC---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcC---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 9875322100 00 0011 1222233344568999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCC------HHHHHHhc----ceeEEecCcEEEEEcCC
Q 001048 754 SGLDARAAATVMRAVKNVVET--GRTVVCTIHQPS------IDIFEAFD----DLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~------~~~~~~~d----~~~~l~~~G~~v~~G~~ 811 (1174)
+|||+..+..+.++++++.++ +.++++++|+.+ ..+.+..| +.+++...+.++..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccH
Confidence 999999999999999997543 678899999876 22333332 33344344667766664
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-16 Score=195.48 Aligned_cols=133 Identities=19% Similarity=0.145 Sum_probs=97.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+ .. ..+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vp--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VP--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BS--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------ee--hhccceeeHHH---hhccCCHH
Confidence 35799999999 999999999999999999999995320 112322 11 11234677766 44555655
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh--hcCCcEEEEeCC---
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 752 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP--- 752 (1174)
||+. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 13799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCCHHHHHH
Q 001048 753 TSGLDARAA-ATVMRAVKNVVETGRTVVCTIHQPSIDIFEA 792 (1174)
Q Consensus 753 tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 792 (1174)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+.
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~ 703 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTAL 703 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHh
Confidence 999999875 567777765 589999999974 44443
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-16 Score=172.10 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=91.6
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe-----EEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-----IEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~-----~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++||+++|+||||||||||+++|+|.....+ ..|.+.+++.+.. ..+.+++++|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999432111 2346666654310 01122333333222221 2333221
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhhc-------CCcEEEEeCCC
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 753 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~~-------~p~illlDEPt 753 (1174)
+. ...+++ +++++..+++++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3333555555555 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-cCCEEEEEecCCCH---HHHHHhcceeEEec
Q 001048 754 SGLDAR-------A-----AATVMRAVKNVVE-TGRTVVCTIHQPSI---DIFEAFDDLVLMKN 801 (1174)
Q Consensus 754 sgLD~~-------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~~---~~~~~~d~~~~l~~ 801 (1174)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|.++.+.+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 999984 2 2367788888765 49999999995431 25566788887765
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-16 Score=183.30 Aligned_cols=166 Identities=20% Similarity=0.154 Sum_probs=101.8
Q ss_pred cccccc-eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EE-EEECCeeCCcccccceEEEEccCCCCCCC
Q 001048 600 QLLSDI-TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GD-IRIGGYPKVQHTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 600 ~iL~~v-s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~----G~-i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~ 673 (1174)
..|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++.+.. .++.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 445555 6899999999999999999999999999965211222 56 788775431 12334555555433222
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh-------cCCcE
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-------ANPSI 746 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-------~~p~i 746 (1174)
++.||+.+.. . .-|.+|+|++.++++++ .+|++
T Consensus 195 -~v~~ni~~~~------------------------------------~---~~~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 195 -EVLKHIYVAR------------------------------------A---FNSNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp -HHGGGEEEEE------------------------------------C---CSHHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred -HHhhCEEEEe------------------------------------c---CChHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 3333322110 0 01456777777777777 68999
Q ss_pred EEEeCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 747 IFMDEPTSGLDARA------------AATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 747 lllDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+++||||+++|+.. ...+++.|+++++ .|.|||+++|..+ +.-..+++..... +|+++.++.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 99999999999852 3566667777765 4899999999864 3333334444443 577666555
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-15 Score=188.16 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=106.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|++ ++|++++|+||||||||||||+|+|.... ++ .|..+.. ....++++.| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccch--hcccceeHHH---HHhhCCHH
Confidence 35799999999 99999999999999999999999985310 00 1211111 1123455544 34455555
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
|++..+ ...+|+|+++ ++.+...+++|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 544211 0135666654 455555789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 758 ARAAATV-MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 758 ~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.....+ .+.++.+.+ .|.++|++||+++ +.+.+|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9887775 778888887 4999999999864 4567787766654 77776544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-15 Score=169.66 Aligned_cols=127 Identities=21% Similarity=0.239 Sum_probs=85.2
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
...+|++++|+|||||||||||++|+|..++ ...|.|...+.+.. ...+...+++.|.+.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPIE-FVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcHH-hhhhccccceeeeeecccc--------------
Confidence 6789999999999999999999999997652 11355543332221 1111222333332211111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~ 767 (1174)
++-.+ +||++|..+|++|++|||| |..+.. .
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 12221 9999999999999999999 655543 4
Q ss_pred HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 768 l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.++++.|+||++|+|+.+ ..+.+|+++.+..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~--~~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS--AAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS--HHHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccCh--HHHHHHHHhhhcC
Confidence 4445667999999999986 3478899888753
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=160.25 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=102.6
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999998443 2444 2344321 12346787765422 11212211 111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC--CCCHHHH---H
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 762 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts--gLD~~~~---~ 762 (1174)
..... ...+++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 23456777887776655433 36999998875 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCC
Q 001048 763 TVMRAVKNVVE-TGRTVVCTIHQPS 786 (1174)
Q Consensus 763 ~i~~~l~~l~~-~g~tvi~~~H~~~ 786 (1174)
.+++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88888998864 5999999999854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-17 Score=167.39 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=101.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 690 (1174)
||+++|+||||||||||+++|+|..+ . +| |.++|.+... ...++.+||++|+. .. + ++++. .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g--~-~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG--T-RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TS--C-EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--cc--c-eehhh---ccc---
Confidence 78999999999999999999999765 2 57 8888876533 23467789999974 11 1 11110 010
Q ss_pred CCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHH-HHHH---HhhcCCcEEEEeC--CCCCCCHHHHHH
Q 001048 691 QIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAT 763 (1174)
Q Consensus 691 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv-~ia~---al~~~p~illlDE--PtsgLD~~~~~~ 763 (1174)
++..+ ..+..+|..+ ..+|+|||+++ ++++ |+..+|++|++|| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 01111 0122444433 35999999988 4455 6899999999999 898899875554
Q ss_pred HHHHHHHHHHcCCEEEE----EecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 764 VMRAVKNVVETGRTVVC----TIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~----~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.+++ ++..++|+ ++|+.+. ...|++..+ ++|+++.-.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~~---~~vd~i~~~-~~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKPL---ALVEEIRNR-KDVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSCC---TTHHHHHTT-CCSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCch---HHHHHHeec-CCcEEEEeCh
Confidence 44444 44555553 2387542 344565555 4688887543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=167.09 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=73.1
Q ss_pred ccCCccccchhHHHHHHh------cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKKRLTTGELIV------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv------~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I 132 (1174)
..|||||||||+||++|+ .+|++|+|||||+|||+.+...+++.|+++.+ .|+|+|+..|.+. ..+.+|++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 459999999999999999 79999999999999999999999999999975 5889998878663 47889999
Q ss_pred eeecCCcEEE
Q 001048 133 ILMAEGKIVY 142 (1174)
Q Consensus 133 ivL~~G~vvy 142 (1174)
++|.+|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-15 Score=175.77 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=91.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+||+| +|+||||||||||+|+|+|...+.+..|.+.+++.+ ....+.+++++|++.+.+.+||.
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 467999999998 999999999999999999976421112222222211 11234579999988888889999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc---EEEEeCCC-
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPT- 753 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~---illlDEPt- 753 (1174)
||+.++.... .... ...+.+.+ + ..++.+++||++|||+++.+|+ +|++||||
T Consensus 94 Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 94 DTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ECC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred echhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 9988764321 0010 11122111 0 1266778899999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.|||+... +.++++.. +.++|+++|..+
T Consensus 151 ~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 151 HGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred cCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 69998873 44455543 788888888754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-16 Score=163.33 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 650 (1174)
++++|+++.+. ..++++ +.+++|+.++|+|+||||||||+|.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777776442 257777 8899999999999999999999999999751 0144565543221
Q ss_pred eC-C-cccccceEEEEccCCCCCCCCC---HHHHHHHHHhh-cc--------CCCCCHHHHHHHHHHHHHHcCCCCc-cc
Q 001048 651 PK-V-QHTFARISGYCEQNDIHSPNIT---VEESIVFSAWL-RL--------STQIDSKTKAEFVNEVLQTIELDGI-KD 715 (1174)
Q Consensus 651 ~~-~-~~~~~~~~~~v~Q~~~~~~~lT---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 715 (1174)
-. . ........|+..+ ..+... .+..+...... +. ..........+.+.+.++..++... ..
T Consensus 68 ~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYA---EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCccc---ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 00 0 0000000011100 001000 11122211110 00 0000001122234455555565432 12
Q ss_pred ccccCCCCCCCCHHHHHH-HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 716 SLVGLPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 716 ~~~~~~~~~~LSgGqrqR-v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 145 nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 2489999999 89999999999999999999999999999999999988765544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-15 Score=159.59 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=105.5
Q ss_pred cccccccee-EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccc---eEEEEccCCCCCCCC
Q 001048 599 LQLLSDITG-TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR---ISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~-~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~Q~~~~~~~l 674 (1174)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh----
Confidence 467888886 899999999999999999999999997543 12344544332211100000 01111110000
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEP 752 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEP 752 (1174)
+++ .. ++...+..+ .... ....|.+|.++...+.....+|+ ++++|||
T Consensus 83 ---~~~------~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 83 ---KKL------II------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp ---TTE------EE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred ---CCE------EE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 000 00 000000000 0000 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCCC-------HHHHHHhcceeEEec
Q 001048 753 TSGL--DARAAATVMRAVKNVVE-TGRTVVCTIHQPS-------IDIFEAFDDLVLMKN 801 (1174)
Q Consensus 753 tsgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~~~~~~d~~~~l~~ 801 (1174)
|+++ |+.....+++.|+++++ .|.|||+++|+.+ ..+.+.+|+++++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 99999999999999875 4999999999872 236677888888864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-14 Score=167.90 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=111.5
Q ss_pred ccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-. ... .....++.++|++|++.+++.+||
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccch
Confidence 45 9999999999999 99999999999999999999742 12111 110 111234568999999888888999
Q ss_pred HHHHHHHHhhccCCCCCHH----HHHHHHHHHHHHc-CCC----Cccccc----cc--CCCCCCCCHHHHHHHHHHHHhh
Q 001048 677 EESIVFSAWLRLSTQIDSK----TKAEFVNEVLQTI-ELD----GIKDSL----VG--LPGVNGLSTEQRKRLTIAVELV 741 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqRv~ia~al~ 741 (1174)
.||+.++.... ...... ...+..++.++.. ++. ...|+. +. .+...+|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99987653210 000001 1123344555544 433 222332 11 11123577776 78999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKN-VVETGRTVVCTIHQ 784 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 784 (1174)
.+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999998886 77779999888864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-13 Score=137.80 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 724 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999999865 57899999974 567788988866
Q ss_pred e
Q 001048 800 K 800 (1174)
Q Consensus 800 ~ 800 (1174)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=159.95 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCccccchhHHHHHHhcCC--cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee---
Q 001048 61 VSGGQKKRLTTGELIVGPT--RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM--- 135 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P--~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL--- 135 (1174)
+||||||||+||++|+.+| +||+|||||+|||+.++..+.+.|++++ .|.|||+..|.| ++.+.+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999997 378999887875 678999999999
Q ss_pred -cCCcEEEeC
Q 001048 136 -AEGKIVYHG 144 (1174)
Q Consensus 136 -~~G~vvy~G 144 (1174)
.+|+++-..
T Consensus 372 ~~~G~~~~~~ 381 (415)
T 4aby_A 372 VEDGRTVSHV 381 (415)
T ss_dssp EETTEEEEEE
T ss_pred ccCCceEEEE
Confidence 899987654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-14 Score=155.41 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=85.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH----HHHHHHH
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV----EESIVFS 683 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv----~e~l~~~ 683 (1174)
..++|++++|+||||||||||+++|+|..++.+..|.|.+++.+... ..++.++|++|++..++.+|+ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 57899999999999999999999999977532368999998876432 223457899986543333322 1111110
Q ss_pred HhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHH
Q 001048 684 AWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763 (1174)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 763 (1174)
.... +.| +++ +++++.+++++||| ||+.++..
T Consensus 91 -------------------------------~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 -------------------------------GNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp -------------------------------TEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred -------------------------------hccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0000 112 222 34556668999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCC
Q 001048 764 VMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+.+.+. +++||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-15 Score=160.18 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=108.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ 691 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 691 (1174)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+..|+++++.+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc-
Confidence 789999999999999999999873 247788888654221 12356666554444567888877653221100
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcccccccC---CCCCCC--CHHHHHHHHHHH------HhhcCCcEEEEeCCCCCCCHHH
Q 001048 692 IDSKTKAEFVNEVLQTIELDGIKDSLVGL---PGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 760 (1174)
Q Consensus 692 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~L--SgGqrqRv~ia~------al~~~p~illlDEPtsgLD~~~ 760 (1174)
+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| +||+..
T Consensus 73 -----------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 73 -----------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 000001110000 000124 888888888888 8999999888884 899988
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecC-CCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 761 AATVMRAVKNVVETGRTVVCTIHQ-PSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 761 ~~~i~~~l~~l~~~g~tvi~~~H~-~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
... .+.++.+.+.+.++|.++|+ ++ ++.+.+|+++ ++|+++..|+++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 888 88888876567899999998 65 6777888887 579999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-13 Score=143.82 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=98.6
Q ss_pred ccccccce-eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDIT-GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs-~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++ +..++. .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~-----------------i~~~~~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAY-----------------VDTEGG----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEE-----------------EESSCC----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEE-----------------EECCCC----CCHH
Confidence 35677776 4899999999999999999999999998 221 12233 322221 1111
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHHHHHhhcC-CcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~ia~al~~~-p~illlDEPts 754 (1174)
.+.-.. . ...... +++++.+. +. ..|++ ++++++.+++++.+ |+++++||||+
T Consensus 61 -~~~~~~--~-~~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 -RLVQMA--E-TRGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp -HHHHHH--H-TTTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred -HHHHHH--H-hcCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111000 0 001111 11222221 11 23444 36788899999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHc-CCEEEEEecCCCH------------HHHHHhcceeEEecC
Q 001048 755 GLDARA--------AATVMRAVKNVVET-GRTVVCTIHQPSI------------DIFEAFDDLVLMKNG 802 (1174)
Q Consensus 755 gLD~~~--------~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------~~~~~~d~~~~l~~~ 802 (1174)
++|+.. ...+++.|++++++ |.|+|+++|.... .+...+|.++++.+.
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 24566668887754 8999999997541 356678888888754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-13 Score=156.53 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=96.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
.+|++++ +++|++++|+||||||||||+++|+|..+ +. +|+|.+.|.+.. ...++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 4677776 89999999999999999999999999765 33 689977665543 23344567777731
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+++.. ..+ +.+|+++|..+|+++++|||+ |+
T Consensus 191 -----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~ 221 (372)
T 2ewv_A 191 -----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 221 (372)
T ss_dssp -----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SH
T ss_pred -----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CH
Confidence 12210 124 469999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+.. .+++. +..|.+++.++|..+ ..+.+|+++.+.
T Consensus 222 e~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 222 ETVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6543 34444 346899999999854 567788876653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=133.33 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=62.8
Q ss_pred ccCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
..||||||||++||++++ ++|++++|||||+|||+.++..+.+.|+++++ +.++|+..|+ ..+.+.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999999864 3456655454 578899999997
Q ss_pred ec
Q 001048 135 MA 136 (1174)
Q Consensus 135 L~ 136 (1174)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-15 Score=154.45 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=88.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWL 686 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~ 686 (1174)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 467999999999999999999999999743 58899998764221 11234567777543 457899998765432
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~ 766 (1174)
....... ..++.+++..++....+ .+. ....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~--~~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTA--LAR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHT--TCS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHh--cCC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 00000000011111110 011 11359999999999999999999876 68877766666
Q ss_pred HHHHH
Q 001048 767 AVKNV 771 (1174)
Q Consensus 767 ~l~~l 771 (1174)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 65544
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-16 Score=176.08 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=101.7
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCC------CeEEEEEEECCeeCCcc------------------cccceEEEE---c
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKTG------GIIEGDIRIGGYPKVQH------------------TFARISGYC---E 665 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 665 (1174)
++++|+|+||||||||+|.|.|...+ .+..|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999997521 13579999999875321 122345666 5
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCC--CHH-HHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQI--DSK-TKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~~--~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|+..+.+..++.||..++......... ... ....+++.++..+++.+..+... ++|+|||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 766656677888776543100000000 000 00001112233344444443332 489999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888875 5899999999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-13 Score=154.99 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=99.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEc-cCCCCCCCCCHHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCE-QNDIHSPNITVEE 678 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~-Q~~~~~~~lTv~e 678 (1174)
+++++|+.+++|++++|+||||||||||+|+|+|..++ .+|.|.++|..... ...++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 44999999999999999999999999999999998873 58999998853211 12456788888 54321
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+++++..+|..|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233467777788888999999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667776554567899999864 56778888888653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-15 Score=171.66 Aligned_cols=166 Identities=9% Similarity=0.019 Sum_probs=98.9
Q ss_pred ccccceeEEeC--CeEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 601 LLSDITGTFRP--GILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 601 iL~~vs~~i~~--Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
+.+.|+++|++ |+.++|+||||||||||+++|+|... +.+ |++.+++... ..+..+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 46789999999 99999999999999999999999876 456 5554421100 001011111
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC--CCcccccccCCCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL--DGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE 751 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-~~p~illlDE 751 (1174)
.. +++.+...- . ......+.+.+.+ .+..++.. ..+|+|++||..+++++. .+|++++|||
T Consensus 222 ~~-~~I~~~~q~---------~-~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQR---------Y-IDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHHH---------H-HHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHHH---------H-HHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 22 334332110 0 0000000010000 01111111 136777788888888775 6999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 752 ---PT------SGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 752 ---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
|+ +++|...+..+.+.|+++.+ .|.++++++|. + +....++.+.++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 65 58999999999999998764 48999999984 3 444555555554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-14 Score=158.49 Aligned_cols=146 Identities=12% Similarity=0.189 Sum_probs=98.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh-
Q 001048 611 PGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWL- 686 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~- 686 (1174)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+++++|+..+.+..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 56788877765422 11223345567777778888999999875321
Q ss_pred -----ccCCCCCHHHHHHHHHHHHHH--cC------------CCCcccccccCCCCCCCCHHHHHHHHHHHHh-hcCCcE
Q 001048 687 -----RLSTQIDSKTKAEFVNEVLQT--IE------------LDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL-VANPSI 746 (1174)
Q Consensus 687 -----~~~~~~~~~~~~~~~~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al-~~~p~i 746 (1174)
... ...... +.++.+.+. .+ +....++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 010 111111 122222211 11 11112222 235898 66 788 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 747 IFMD----EPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 747 lllD----EPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
++|| |||+|||..++..+.+.++++.++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9999 999999999999999999988764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-13 Score=161.30 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=84.1
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH--HhcCCcE----eeeeC-CCCCcChHHHHHHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL--IVGPTRA----LFMDE-ISNGLDSSTTFQIVSFLKHL 106 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a--Lv~~P~I----L~LDE-PTSGLDS~sa~~v~~~L~~l 106 (1174)
++++++++.+||++..+ . +.|||||||||+||++ |+.+|+| |+||| ||+|||.. ...+.+.+++
T Consensus 216 ~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~- 286 (460)
T 2npi_A 216 HNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK- 286 (460)
T ss_dssp CCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH-
Confidence 34667889999988776 3 4599999999999999 9999999 99999 99999999 4444444443
Q ss_pred hHhCCCEEEEEecCCCh-----hHHhhhhh-----eeeec-CCcEEEeCCcchH
Q 001048 107 VHITDATALISLLQPAP-----ETFDLFDD-----VILMA-EGKIVYHGPLSYS 149 (1174)
Q Consensus 107 a~~~~~tvI~sihQps~-----~i~~lfD~-----IivL~-~G~vvy~G~~~~~ 149 (1174)
.+.|+|+.+|.+.. .+.+++|+ |++|. +|+++ .|++++.
T Consensus 287 ---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 ---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp ---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 46788888899882 45588999 99999 99999 9987543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-13 Score=159.76 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------c--ccceEEEEccCCCCCC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------T--FARISGYCEQNDIHSP 672 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~Q~~~~~~ 672 (1174)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999765 3469999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh-cCCc-EEEEe
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMD 750 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-~~p~-illlD 750 (1174)
..|+++|+.++..- ..+ . -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~----~~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKAR----NID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHT----TCS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhc----CCC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 89999999886421 110 0 0112222211111 12223457888898764 4573 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEec
Q 001048 751 EPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIH 783 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H 783 (1174)
+||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 33444443 3889999999
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=148.45 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=71.6
Q ss_pred cCCccccchhHHHHHHh---------cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhh
Q 001048 60 GVSGGQKKRLTTGELIV---------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD 130 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv---------~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD 130 (1174)
.+|||||||++||++|+ ++|+||+||||||+||+..+..+++.|+++. .|+|++.| +.. .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~----~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP----GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT----TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc----cCC
Confidence 59999999999999999 9999999999999999999999999998753 46776666 433 899
Q ss_pred heeeecCCcEEEeCCcchH
Q 001048 131 DVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 131 ~IivL~~G~vvy~G~~~~~ 149 (1174)
++++|.+|+++..|++++.
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999987643
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-12 Score=145.05 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe--
Q 001048 59 RGVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV-- 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I-- 132 (1174)
..||||||||++||++|+ .+|+||+|||||++||+.++..+.+.|++++ .+.++|++.|.+ ++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 359999999999999997 7899999999999999999999999999985 367899888874 678899987
Q ss_pred eeecCCc-EEEeCCcch
Q 001048 133 ILMAEGK-IVYHGPLSY 148 (1174)
Q Consensus 133 ivL~~G~-vvy~G~~~~ 148 (1174)
++|.+|+ .+.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 7888775 444444443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-14 Score=146.41 Aligned_cols=138 Identities=13% Similarity=0.235 Sum_probs=85.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCc------cccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPKVQ------HTFA-RISG----YCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~Q~~~~~~~lTv~e~l 680 (1174)
++++|+|+||||||||+++|+|.+++ +...|.|.++|.++.. ..++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999997652 1237999999987321 1233 3455 788876544 110
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHH-cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE-------EEeCC
Q 001048 681 VFSAWLRLSTQIDSKTKAEFVNEVLQT-IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 752 (1174)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il-------llDEP 752 (1174)
... +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .=|.|
T Consensus 77 -----------~~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CCh-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 001 111134556655 43 36888885 49999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcC
Q 001048 753 TSG---LDARAAATVMRAVKNVVETG 775 (1174)
Q Consensus 753 tsg---LD~~~~~~i~~~l~~l~~~g 775 (1174)
..+ +|......+.+.+.+..++|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23444566777776555544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=147.03 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-CeeCCcccccceEEEEccCCCCCCCCCHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYPKVQHTFARISGYCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l 680 (1174)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 4455553 37999999999999999999999997651 347999887 65542 2334578999999888888899884
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh
Q 001048 681 VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL 740 (1174)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al 740 (1174)
+ + ...+.++..+.+.++++.+++.+..|.... ++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134455556677888999999887777653 699 999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-13 Score=136.53 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=65.8
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCc
Confidence 3467999999999999999999999999999999999977 3 4799999998764211111 2789988777 8999
Q ss_pred HHHHHH
Q 001048 677 EESIVF 682 (1174)
Q Consensus 677 ~e~l~~ 682 (1174)
.||+.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=142.13 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=67.5
Q ss_pred CCCCHHHHHHH------HHHHHhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 724 NGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 724 ~~LSgGqrqRv------~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567899999 99999999999999999999999999874 3579999999963 56778999
Q ss_pred eEEecCcE
Q 001048 797 VLMKNGGR 804 (1174)
Q Consensus 797 ~~l~~~G~ 804 (1174)
+++.++|.
T Consensus 356 ~~l~k~~~ 363 (371)
T 3auy_A 356 INVKKDGN 363 (371)
T ss_dssp EEEEESSS
T ss_pred EEEEecCC
Confidence 99876553
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-12 Score=150.86 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=69.3
Q ss_pred ccC-CccccchhHHHHHHhcCC--cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 59 RGV-SGGQKKRLTTGELIVGPT--RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 59 rGL-SGGqKkRvSIA~aLv~~P--~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ |+|||+..|.| ++...+|++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 346 999999999999999999 99999999999999999999999999985 68999888874 567789999999
Q ss_pred cCCc
Q 001048 136 AEGK 139 (1174)
Q Consensus 136 ~~G~ 139 (1174)
.+|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7663
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-14 Score=161.19 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=106.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~ 670 (1174)
.+.+|+++|+++++|++++|+||||||||||+|+|+|... +.+|+|.+.|.+.... ..++.+++++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3579999999999999999999999999999999999765 3468999988775321 234567999998877
Q ss_pred CCCC------------CHHHHHHHHH-------------------hhc---------cCCCCCHHHHH---HHHHHHHHH
Q 001048 671 SPNI------------TVEESIVFSA-------------------WLR---------LSTQIDSKTKA---EFVNEVLQT 707 (1174)
Q Consensus 671 ~~~l------------Tv~e~l~~~~-------------------~~~---------~~~~~~~~~~~---~~~~~~l~~ 707 (1174)
++.. +++|.+.... .+. .... ...+.+ +.+.+....
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccE
Confidence 6532 2233321100 000 0000 000000 001111111
Q ss_pred cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 708 l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 198 vvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 198 IAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111 112211 113479999999999999987 688886 999999999999999988653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-12 Score=148.44 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=97.8
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccc--eEEEEccCCCCCCCCCHHHH
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FAR--ISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~--~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+..... +++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999765 44799999998864211 122 24599999888899999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.++..... +. .+++..|+.+..+.. .++.-.+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987632110 00 012222332222221 1222348899998888889985554
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 760 AAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
..+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355566666664 48999999995
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-12 Score=143.21 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=66.8
Q ss_pred ccCCccccc------hhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKK------RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKk------RvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I 132 (1174)
+.||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|. .++.+.+|++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCCEE
Confidence 459999999 67888999999999999999999999999999999999875 46788888776 4688999999
Q ss_pred eeec
Q 001048 133 ILMA 136 (1174)
Q Consensus 133 ivL~ 136 (1174)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=123.88 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=37.0
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCC
Q 001048 741 VANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT-VVCTIHQP 785 (1174)
Q Consensus 741 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~~~H~~ 785 (1174)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 56799999999998 6655588899999998877888 88899964
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=133.05 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=75.2
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC--CCCC---CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG--RKTG---GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++|++++|+||||||||||++.|++ ..++ +...|.+++++.+. + ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999999 3321 01245566655321 0 1111000
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH-HHHHHHhh--cCCcEEEEeCCCCCCCH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR-v~ia~al~--~~p~illlDEPtsgLD~ 758 (1174)
....+ .... +++++.+. +. ...+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11111 1111 11222110 00 1245554332 33333443 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 001048 759 R-------A-----AATVMRAVKNVVET-GRTVVCTIHQPS 786 (1174)
Q Consensus 759 ~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~ 786 (1174)
. . ...+++.|++++++ |.|||+++|...
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 5 3 34566666666654 999999999653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-12 Score=151.42 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=97.5
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+... ....++++.+++. ..+++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 378999999999999999999999999999999642 123332211 1123344444320 0111111100
Q ss_pred HHHhhccCCCCCHHH--HHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 682 FSAWLRLSTQIDSKT--KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.............. ..++++.++..+++. +.. ...||+||+||+++|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 000000000111110 001122223333332 122 236999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 760 AAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 760 ~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.+ ..++.+++. .+.|.+++.+|..-...+.+.++.+.-+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 77 444545444 3447676665543333566666655433
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-12 Score=143.90 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=85.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh---h
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW---L 686 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~---~ 686 (1174)
+++.+++|.||||||||||.+.|.+.... .| . . ++.+.+|+|++.+++ .++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46889999999999999999999987642 11 0 1 334566699887765 588999987631 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHH
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 760 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 760 (1174)
....+.......+...+.++.+.... .....+.. ....+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 00001111111234455666554320 01111111 124699999999999833322999999999999999864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-11 Score=124.64 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=42.1
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 001048 741 VANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQPSI 787 (1174)
Q Consensus 741 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 787 (1174)
+.+|++|+||||++ ++|+..+..+.+++++..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999887789999999998753
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.6e-11 Score=137.37 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred hHHHHHHHHhCCccc-------ccccccC----CCcccCCccccchh------HHHHHHhcC-CcEeeeeCCCCCcChHH
Q 001048 34 LQTDYILKILGLDIC-------ADTMVGD----PMRRGVSGGQKKRL------TTGELIVGP-TRALFMDEISNGLDSST 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~-------~dT~VG~----~~~rGLSGGqKkRv------SIA~aLv~~-P~IL~LDEPTSGLDS~s 95 (1174)
+.+++.++.+++.+. .+..+.+ ...+.+|||||||+ ++|++|.++ |++|+|||||+|||+.+
T Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 456778888888661 1222222 12345999999988 567899999 99999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 96 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 96 a~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
+..+.+.|+++.. +.+||++.|.| ++...+|++++|.+
T Consensus 323 ~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~~~~l~k 360 (371)
T 3auy_A 323 RAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADVIINVKK 360 (371)
T ss_dssp HHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCEEEEEEe
Confidence 9999999998643 45788888886 46789999999973
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-11 Score=122.86 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=63.5
Q ss_pred ccCCccccchhHHHHH-----HhcCCcEeeeeC--CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEec--CCChhHHhhh
Q 001048 59 RGVSGGQKKRLTTGEL-----IVGPTRALFMDE--ISNGLDSSTTFQIVSFLKHLVHITDATALISLL--QPAPETFDLF 129 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~a-----Lv~~P~IL~LDE--PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sih--Qps~~i~~lf 129 (1174)
..||||||||++||++ |+.+|++|+||| ||++||+.+...+.+.|++ .+.|+|++.| |....+-+.+
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHH
Confidence 3499999999999996 999999999999 9999999999999888875 4667888888 4555565666
Q ss_pred hheeeecCCcEEE
Q 001048 130 DDVILMAEGKIVY 142 (1174)
Q Consensus 130 D~IivL~~G~vvy 142 (1174)
|+ .+|++++
T Consensus 151 ~r----~~~~i~~ 159 (178)
T 1ye8_A 151 RL----PGAVLIE 159 (178)
T ss_dssp TC----TTCEEEE
T ss_pred hc----CCcEEEE
Confidence 76 5677766
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-11 Score=139.86 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 725 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999999865588999999984 5677889998886
Q ss_pred c
Q 001048 801 N 801 (1174)
Q Consensus 801 ~ 801 (1174)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-13 Score=157.99 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=92.1
Q ss_pred ccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEc--
Q 001048 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCE-- 665 (1174)
Q Consensus 595 ~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~-- 665 (1174)
..+...+|+++ +. ++|++++|+|||||||||||++|+|...+ .+|+|.+.|.++... ...+.+++.+
T Consensus 152 ~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~ 227 (418)
T 1p9r_A 152 TAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFAR 227 (418)
T ss_dssp CHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHH
T ss_pred CHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHH
Confidence 33445688888 53 89999999999999999999999997653 368899888765311 1223344544
Q ss_pred -------cCCCCC--CC----CCHHHHHHHHHhhcc----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 666 -------QNDIHS--PN----ITVEESIVFSAWLRL----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 666 -------Q~~~~~--~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
|++..+ .. .|+.+++.++..-.. ....+. .+.++ .+..+++.+.. .. ..|||
T Consensus 228 ~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i~-rL~~lgl~~~~--~~-----~~LSg 296 (418)
T 1p9r_A 228 GLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAVT-RLRDMGIEPFL--IS-----SSLLG 296 (418)
T ss_dssp HHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHHH-HHHHHTCCHHH--HH-----HHEEE
T ss_pred HHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHHH-HHHHcCCcHHH--HH-----HHHHH
Confidence 876542 33 589999987642110 011111 12233 45667876542 22 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEE
Q 001048 729 EQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~ill 748 (1174)
||+|| |||+|+.+|++..
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-14 Score=169.96 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=102.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+.........++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 468999999999999999999999999999999999886 347999998865211112334556655433222234444
Q ss_pred HHHHHHhhccC----CCCCHHHHHH------------------HHHHHHHHcCCCC---------cccccccCCCCCCCC
Q 001048 679 SIVFSAWLRLS----TQIDSKTKAE------------------FVNEVLQTIELDG---------IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 679 ~l~~~~~~~~~----~~~~~~~~~~------------------~~~~~l~~l~l~~---------~~~~~~~~~~~~~LS 727 (1174)
++....+.+.. ......+... .+.++++.+.... ..+..+.. ...+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEEe
Confidence 44322111000 0111111100 1122233322211 11111110 12479
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCCC
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC--TIHQPS 786 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~ 786 (1174)
||||||++++. + | |+|||+.....+++.|.++.++|+|+++ ++|+++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ 451 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE 451 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH
Confidence 99999877642 1 7 9999998887777777777666888875 889753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-12 Score=140.45 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=81.6
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCccc--cc-ceEEEEccCCCCC-----CCCCH
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHT--FA-RISGYCEQNDIHS-----PNITV 676 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~~-~~~~~v~Q~~~~~-----~~lTv 676 (1174)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++..... .+ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34569999999999999999999999 766 46899999 887764321 11 2479999998653 67899
Q ss_pred HHHH--HHHH----hhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 677 EESI--VFSA----WLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 677 ~e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
||+ .|+. .++........+...+++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4431 0111110111223356889999999985 556554 3599999999999874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-12 Score=137.71 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=68.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
.++|++++|+||||||||||+++|+|...+ ++..|.|.++|..... +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence 578999999999999999999999997652 1234555555443221 1111110000000
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH-HHhhcCCcEEEEeCCC
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT 753 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia-~al~~~p~illlDEPt 753 (1174)
.+...+.. ...+.+..+...+..+....+.+. ++|+||+||+++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00011111 122223322211222223333232 4899999999998 8899999998899984
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-10 Score=135.60 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=75.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHH--hCCCCC---CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVL--SGRKTG---GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l--~g~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++|++++|+||||||||||++.| .+..+. +...+.+++++... + ....-..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~-----------------~----~~~rl~~ 231 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-----------------F----RPVRLVS 231 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc-----------------c----CHHHHHH
Confidence 57999999999999999999999954 454431 11134555555431 0 1110000
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH-HHHHHHHHHHHhh--cCCcEEEEeCCCCCCCH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg-GqrqRv~ia~al~--~~p~illlDEPtsgLD~ 758 (1174)
....+ .... +.+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|+
T Consensus 232 ~a~~~----gl~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 232 IAQRF----GLDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHT----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHc----CCCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 11111 0111 0122211 111 01222 2333444344433 47999999999999997
Q ss_pred HHH------------HHHHHHHHHHHHc-CCEEEEEecC
Q 001048 759 RAA------------ATVMRAVKNVVET-GRTVVCTIHQ 784 (1174)
Q Consensus 759 ~~~------------~~i~~~l~~l~~~-g~tvi~~~H~ 784 (1174)
... ..+++.|++++++ |.|||+++|.
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 543 5678888888765 9999999997
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=132.09 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=84.5
Q ss_pred EEEecCCCCCHHHHHHHHhC-CCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI 692 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 692 (1174)
+.|.||||+|||||+++|+| ... +..|++.++|.+.... ..+..+++++|.+.+....+ +. + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM---G-------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--hc---C-------Cc
Confidence 89999999999999999999 444 3468888888764321 12345678888654321111 00 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001048 693 DSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772 (1174)
Q Consensus 693 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 772 (1174)
... .+++.++.+......+... .+|| +..+|+++++|||++ ||..++..+.+.|++..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111111 2566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhh
Q 001048 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFE 823 (1174)
Q Consensus 773 ~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~ 823 (1174)
.+.++|+++|+++. +.... . .....+...+++. .++.++..
T Consensus 163 -~~~~~Il~t~~~~~-l~~~l-----~-sR~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP-IIAPI-----K-SQCLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCS-SCHHH-----H-TTSEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHH-HHHHH-----H-hhceEEecCCcCH--HHHHHHHH
Confidence 37899999999762 22221 1 1235566666653 34444444
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-10 Score=133.01 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=66.5
Q ss_pred cCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 60 GVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
.||||||||++||++|+ ++|++++|||||++||+.+...+.+.|+++.. .+.++|++.|. ..+.+.+|++++|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 39999999999999999 68999999999999999999999999999764 36788887776 5778899999999
Q ss_pred cC
Q 001048 136 AE 137 (1174)
Q Consensus 136 ~~ 137 (1174)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-10 Score=121.59 Aligned_cols=52 Identities=17% Similarity=0.035 Sum_probs=45.9
Q ss_pred cccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 64 GQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 64 GqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
||||||+||++|+.+|+||+|||||+| ++..+++.|+++ + .|+|+| +.|.+.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 999999999999999999999999999 889999999987 3 478888 777654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-10 Score=119.51 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=53.6
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChH----------------HHHHHHHHHHHHhHhCCCEEEEEecC
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS----------------TTFQIVSFLKHLVHITDATALISLLQ 120 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~----------------sa~~v~~~L~~la~~~~~tvI~sihQ 120 (1174)
.|||||||++||+++..+|++|+|||||+|||+. +...+++.|+++.+. |.|+|++.|.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~ 158 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNS 158 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCC
Confidence 6999999999999999999999999999999999 558889999888765 8899988774
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-11 Score=140.51 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=96.2
Q ss_pred cccccccceeEEeCC-------eEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCeeCCc---ccccceEEEEc
Q 001048 598 RLQLLSDITGTFRPG-------ILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPKVQ---HTFARISGYCE 665 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~G-------e~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~ 665 (1174)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356899999999887 89999999999999999999996421 1456666655544321 11235689999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
|.+.+.+ ++.|++..........- .......+.++..++.+++.. +++.. ..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 9877654 78888854332211000 001112233444444445443 34433 36999999998654
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 745 SIIFMDEPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
.+||+.+..++.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999987653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-12 Score=144.36 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCC-CCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQND-IHSPN 673 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~-~~~~~ 673 (1174)
+..+++++++.+++| ++|.||||||||||+++|+|.... |.+.++|.++... ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999997652 6899998765322 1223456777753 34455
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+++.|++......+ .. .... .+....+... ..|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-----~~----~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----SD----RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----CC----Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 56666654321100 00 0000 0122223332 259999999999999999999986 8875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-10 Score=128.38 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=67.0
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcc-cccce-EEEEccCCCCCC----CCCHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQH-TFARI-SGYCEQNDIHSP----NITVE 677 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~Q~~~~~~----~lTv~ 677 (1174)
+++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+..+.. ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999876 56899998 77765432 11122 699999987755 6899
Q ss_pred HHHH--HHHh------hccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 678 ESIV--FSAW------LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 678 e~l~--~~~~------~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
|++. |... ++........+....++++++.++|.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 111110111122345788999999976332221 2477787763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-13 Score=143.95 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHH-HhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 736 IAV-ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 736 ia~-al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|.+++.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivn 171 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIN 171 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEEC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEEC
Confidence 456 788889999999999999999999999999887653 2344521 356665544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-12 Score=145.63 Aligned_cols=171 Identities=10% Similarity=0.083 Sum_probs=114.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCC----------CCeEEEEEEECCeeCCc----ccccce---EEEEccCCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKT----------GGIIEGDIRIGGYPKVQ----HTFARI---SGYCEQNDIH 670 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~Q~~~~ 670 (1174)
.+++|+.++|+|+||||||||+|+|+|... -.|..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999321 12568999998843211 011222 2466677777
Q ss_pred CCCCCHHHHH--HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC--cE
Q 001048 671 SPNITVEESI--VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP--SI 746 (1174)
Q Consensus 671 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p--~i 746 (1174)
....+..|++ .|-..++. ++.++..++..+ |.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7777766655 33332221 111122222211 111 12355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhccee-EEecCc-EEEEEcCCCc
Q 001048 747 IFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLV-LMKNGG-RIIYFGPLGQ 813 (1174)
Q Consensus 747 lllDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~~-~l~~~G-~~v~~G~~~~ 813 (1174)
+++|||+.++|+......++.++++ ++.|.|++ +|... ++.+.+|++. +|. +| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99864 6778888888 564 68 8888777653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-10 Score=126.17 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv 114 (1174)
.+++.++.+ |.+..| | ..|||||||| ||+|+++|+||+ ||+||+.++..++. +
T Consensus 183 ~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-------- 235 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-------- 235 (305)
T ss_dssp HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G--------
T ss_pred HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H--------
Confidence 345566664 555445 3 4599999999 999999999999 99999999998862 1
Q ss_pred EEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhh
Q 001048 115 LISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEG 155 (1174)
Q Consensus 115 I~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~ 155 (1174)
.|+.++++.+|+| +|.+|++++.|++++...+|..
T Consensus 236 -----tH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 236 -----HSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp -----TTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred -----hCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 3445567789999 9999999999999887665544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-10 Score=126.11 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=65.4
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCccc--c-cceEEEEccCCC------------
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHT--F-ARISGYCEQNDI------------ 669 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~Q~~~------------ 669 (1174)
++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++..... . .+.+|||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999877 56899999 888764321 1 134799999874
Q ss_pred ----CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-Cccccc
Q 001048 670 ----HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSL 717 (1174)
Q Consensus 670 ----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 717 (1174)
++|++|+ ||+.|.. .. . ..+...++.++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788999 9988752 11 1 112235688899999995 555544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-10 Score=130.52 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=86.7
Q ss_pred cccccceeEE-------------------eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcccc
Q 001048 600 QLLSDITGTF-------------------RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHTF 657 (1174)
Q Consensus 600 ~iL~~vs~~i-------------------~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~ 657 (1174)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 6889999988 99999999999999999999999996441123789999 8876432 22
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 001048 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA 737 (1174)
Q Consensus 658 ~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 737 (1174)
++.++++ |+..+++.+|+.+++.+...++.... ..... ..+ .+.+ +|+..+
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i~~P-~~~----------~~~~--~~~~~~ 178 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NVTAP-VYS----------HLIY--DVIPDG 178 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CEEEC-CEE----------TTTT--EECTTC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ceecc-ccc----------cccc--Cccccc
Confidence 3446788 77777788999999988655432110 00000 111 1111 222222
Q ss_pred HHhhcCCcEEEEeCCCCCCCH
Q 001048 738 VELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 738 ~al~~~p~illlDEPtsgLD~ 758 (1174)
.+.+.+|+++|+|.|....|.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 345667899999999988773
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-09 Score=126.58 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=80.5
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCcc--ccchhHHHHHHhc----------CCcEeeeeCCCCCcChHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGG--QKKRLTTGELIVG----------PTRALFMDEISNGLDSSTTFQIVS 101 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGG--qKkRvSIA~aLv~----------~P~IL~LDEPTSGLDS~sa~~v~~ 101 (1174)
.+++++++.++|.+.. ..+ . |||| ||||+.||++|.. +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 4589999999998763 322 2 9999 9999999999999 999999999999999999999999
Q ss_pred HHHHHhH----hC----CCEEEEEecCCCh-hHHhhhhhee-eecCCc
Q 001048 102 FLKHLVH----IT----DATALISLLQPAP-ETFDLFDDVI-LMAEGK 139 (1174)
Q Consensus 102 ~L~~la~----~~----~~tvI~sihQps~-~i~~lfD~Ii-vL~~G~ 139 (1174)
.++++.. .. .+++++|-|.... .+-+++|+|. .|.+|+
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999852 22 3678788887664 5777888886 565554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-09 Score=118.89 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=76.0
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA 684 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~ 684 (1174)
+++..++|++++|+|||||||||+++.|++... +..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 456678999999999999999999999999764 2245666655432100 00111
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH---HHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 685 WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv---~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
.....+..++... ...|||+.+++ ++++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 2223344454321 14689999999 99999999999999999974 3344
Q ss_pred HHHHHHHHHHH
Q 001048 762 ATVMRAVKNVV 772 (1174)
Q Consensus 762 ~~i~~~l~~l~ 772 (1174)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-10 Score=134.46 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=102.7
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhC--CCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC--CHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI--TVEES 679 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l--Tv~e~ 679 (1174)
.+++++.++..++|.|++||||||+++.|.. ..... .|++.+.+.+.....+.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 4778888999999999999999999999875 22211 244554444432211110 0011111 12222
Q ss_pred HHHHHh-hccCCCCCHHHHHHHHHHHHHHcCCCCcccc--cccCCCCCCCCHHHHHHH----------HHHHHhhcCCc-
Q 001048 680 IVFSAW-LRLSTQIDSKTKAEFVNEVLQTIELDGIKDS--LVGLPGVNGLSTEQRKRL----------TIAVELVANPS- 745 (1174)
Q Consensus 680 l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~LSgGqrqRv----------~ia~al~~~p~- 745 (1174)
...+.. ++ ....+.++| .+.++..|+.+..+. .+. ..+|+||+||. .+++++...|.
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcE
Confidence 222111 11 012233344 367888887765432 111 13788887752 35677788998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCCHH-----HHHHhcceeEE
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVET----GRTVVCTIHQPSID-----IFEAFDDLVLM 799 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~~~-----~~~~~d~~~~l 799 (1174)
++++||++.-+|.. ...+.+.|.++++. |.++|++||+|+.+ +...+..++.+
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 79999999988843 34566666666543 77999999999732 44555544444
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-09 Score=118.21 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=42.9
Q ss_pred cCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHH-------HHHHhcceeEEec
Q 001048 742 ANPSIIFMDEPTSGL--DARAAATVMRAVKNVV-ETGRTVVCTIHQPSID-------IFEAFDDLVLMKN 801 (1174)
Q Consensus 742 ~~p~illlDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------~~~~~d~~~~l~~ 801 (1174)
.+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.+.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6544556666666654 4589999999986521 3466788877753
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-08 Score=110.60 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=84.3
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
++++++ +|++++++|+||+||||++..|++... +..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 999999999999999999999999754 22467777655432100 00 100
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC-CCCCCHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 761 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP-tsgLD~~~~ 761 (1174)
..+.+..++..... + .+-...+.+|.+|+++...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 01344566789999998899999999999 999999888
Q ss_pred HHHHHHHHHHHHcCCEEEEE
Q 001048 762 ATVMRAVKNVVETGRTVVCT 781 (1174)
Q Consensus 762 ~~i~~~l~~l~~~g~tvi~~ 781 (1174)
..+.+..+.+. ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 88877776653 23344433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-08 Score=122.19 Aligned_cols=178 Identities=13% Similarity=0.174 Sum_probs=104.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCccccc-ceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIRIGGYPKVQHTFA-RISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~-~~~~~v~Q~~~~~~~lTv 676 (1174)
...|+++.+-+++|+++.|.|+||+|||||+..+++.... ..| .|.+.+.+....... +..+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 4578888888999999999999999999999999874321 012 233322111111000 0000000 0000
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh--cCCcEEEEeCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTS 754 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~--~~p~illlDEPts 754 (1174)
+. ++. ...... ..+++.+.++.++..+. .+..+ .++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~-~~~~~~~a~~~l~~~~l---~i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPE-DWGKLTMAMGSLSNAGI---YIDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHH-HHHHHHHHHHHHHSSCE---EEECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHH-HHHHHHHHHHHHhcCCE---EEECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 112222 23344555555543332 12111 258999987 5667666 6899999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHc-CCEEEEEec---------C--CCH-------HHHHHhcceeEEec
Q 001048 755 GLDA--------RAAATVMRAVKNVVET-GRTVVCTIH---------Q--PSI-------DIFEAFDDLVLMKN 801 (1174)
Q Consensus 755 gLD~--------~~~~~i~~~l~~l~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~~~~l~~ 801 (1174)
..++ .....+.+.|++++++ |.+||+++| + |.. .+...+|.++++.+
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 7742 3346677888888765 999999999 2 431 35567888888865
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-11 Score=129.68 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=65.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh-CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~-g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+..+++||++++|++++|+||||||||||+++|+ |..+ +..+.+.+...+..... ....+|.+++...+..+++.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~--~~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN--NIVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC------CEEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHT
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC--CcccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhc
Confidence 46789999999999999999999999999999999 9764 22222222111111100 11123555543222222222
Q ss_pred HHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH-HHH-HHhhcCCcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL-TIA-VELVANPSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv-~ia-~al~~~p~illlDEPts 754 (1174)
+++......... ..... +.+++.++. +..-..|... . -...-++++ .-+ ..++..|+...+||+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~vild~~~-----~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~ 159 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPR----KNLEDNVDK-GVSTLLVIDW-----Q-GAFKFMEMMREHVVSIFIMPPSMEELRRRLC 159 (231)
T ss_dssp TCEEEEEEETTEEEEEEC----TTHHHHHHH-TCEEEEECCH-----H-HHHHHHHHSGGGEEEEEEECSCHHHHHHC--
T ss_pred CceehhhhhccccCCCCH----HHHHHHHHc-CCeEEEEcCH-----H-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHH
Confidence 111100000000 00001 113333332 1111111100 0 011223333 111 23466778888899999
Q ss_pred CCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCCCHHHHHHhccee
Q 001048 755 GLDARAAATVMRAVKNVVE-----TGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+.|..+...+.+.|++... +...++++.|+++ +..+..++++
T Consensus 160 ~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i 206 (231)
T 3lnc_A 160 GRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNIL 206 (231)
T ss_dssp ------------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHH
Confidence 9998888888777765432 1345666666543 3444444443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-11 Score=132.87 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~-~~~~l 674 (1174)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.++... ...+.+++++|+.. ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 46899999999999 89999999999999999999764 47788887653211 11233566777642 45667
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcE
Q 001048 675 TVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 746 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~i 746 (1174)
++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 7888875332111000 000112222232222 14899999999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.3e-11 Score=129.62 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=82.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCC-CCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQND-IHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~-~~~~~l 674 (1174)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|+. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999 99999999999999999999764 46788887653211 1123345667653 245667
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 675 TVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
++.|++......+... .....+..+.+++++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777774322111100 0011122222333321 3889999999999999999987 4543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-08 Score=106.14 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 770 (1174)
.+.+.+|++++.+|+++++| ||++|..+..++.+.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.51 E-value=8.9e-08 Score=109.40 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCEEEEEecCCCH-----
Q 001048 732 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAATVMRAVKNV----VETGRTVVCTIHQPSI----- 787 (1174)
Q Consensus 732 qRv~ia~al~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~----- 787 (1174)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|.|||+++|-.+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHHhcceeEEecCcEEEEEcC
Q 001048 788 ----------DIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 788 ----------~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13445666666654 56655554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-08 Score=121.73 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=74.7
Q ss_pred CcccCCccccchhHHHHHH--hcCCcEeeeeCCCCCcChHHHHHH-HHHHHHHhHhCCCEEEEEecCCChhHHhhhhhee
Q 001048 57 MRRGVSGGQKKRLTTGELI--VGPTRALFMDEISNGLDSSTTFQI-VSFLKHLVHITDATALISLLQPAPETFDLFDDVI 133 (1174)
Q Consensus 57 ~~rGLSGGqKkRvSIA~aL--v~~P~IL~LDEPTSGLDS~sa~~v-~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Ii 133 (1174)
..+++|+|++++..+|..| +++|++++|||||+|||+.....+ +..++.+.+..|.|+|++.|. .++.+++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhcccc
Confidence 3467999999999999888 999999999999999999999888 777888876568899998887 56778999999
Q ss_pred eecCCcEEEeCCcch
Q 001048 134 LMAEGKIVYHGPLSY 148 (1174)
Q Consensus 134 vL~~G~vvy~G~~~~ 148 (1174)
.+.+|++.+.|+.++
T Consensus 796 ~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 796 TVNNLHVTALTTEET 810 (934)
T ss_dssp TEEEEEEEEEEETTE
T ss_pred eeEeeEEEEEecCCc
Confidence 999999998886544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-08 Score=120.40 Aligned_cols=52 Identities=21% Similarity=0.115 Sum_probs=47.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
..+|+|+|+++++ |+++|+|||||||||||++|+|..+ +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 4689999999999 9999999999999999999999876 45899999998754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-09 Score=109.46 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=42.6
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|++..++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence 56788999999999999999999999999753 345555443221 123456888887544443333
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-07 Score=106.41 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=83.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS 689 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 689 (1174)
++|++++++||||+||||+++.|++.... .+| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999986541 123 23466666542 345556554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001048 690 TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769 (1174)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~ 769 (1174)
+..++... . ..+. +.-+.+|++ +.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222211 0 1122 334556664 4999999999 99999877655555444
Q ss_pred HHH---HcCCEEEE-EecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 770 NVV---ETGRTVVC-TIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 770 ~l~---~~g~tvi~-~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
-+. ..+.++++ ++|..+ ++.+.+++...+. -+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~-~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVP-VNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSC-CCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCC-CCEEEEe
Confidence 332 12334444 478643 5666666655444 3556653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-09 Score=130.59 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC--------
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-------- 669 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-------- 669 (1174)
...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 457899999999999999999999999999999999977532 24788888876532 3345788876421
Q ss_pred --------------CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHH
Q 001048 670 --------------HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLT 735 (1174)
Q Consensus 670 --------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ 735 (1174)
.+..+++.+|+.....-..+...-. .......+ .+|..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~---L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGA---LLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHH---HHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHh---cCceEEechhh-----cCCcccccccccc
Confidence 0111111111110000000000000 00000111 11211111111 1359999999999
Q ss_pred HHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001048 736 IAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770 (1174)
Q Consensus 736 ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 770 (1174)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 898888877777764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.5e-08 Score=108.41 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred ccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEE
Q 001048 63 GGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141 (1174)
Q Consensus 63 GGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vv 141 (1174)
||||||++||++|..+|++|+|||||+. ++++.|+.+.. .+.|++++.|.++ +.+.+||+++|.+|+..
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 8999999999999999999999999982 46777887653 3457899999877 78899999999988743
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.5e-07 Score=102.51 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=61.6
Q ss_pred CCccc-cchhHHHHHHhcCCcEeeeeCCCC---C---cCh-HHHHHHHHHHHHHhHhCCCEEEEEecCCC-h--------
Q 001048 61 VSGGQ-KKRLTTGELIVGPTRALFMDEISN---G---LDS-STTFQIVSFLKHLVHITDATALISLLQPA-P-------- 123 (1174)
Q Consensus 61 LSGGq-KkRvSIA~aLv~~P~IL~LDEPTS---G---LDS-~sa~~v~~~L~~la~~~~~tvI~sihQps-~-------- 123 (1174)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..|.|||++.|..+ .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~ 208 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEG 208 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccC
Confidence 78888 67777 999999999999999999 5 455 66688999999999877999999877753 3
Q ss_pred ------------hHHhhhhheeeecCCcE
Q 001048 124 ------------ETFDLFDDVILMAEGKI 140 (1174)
Q Consensus 124 ------------~i~~lfD~IivL~~G~v 140 (1174)
++...+|+|++|.+|+.
T Consensus 209 ~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 209 RPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.21 E-value=9.9e-07 Score=104.38 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCC
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAATVMRAVKNVV----ETGRTVVCTIHQPS 786 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 786 (1174)
|++++|-.++++....|.||++||+ ++|.|......+.++|..+- +.+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777777663 24778999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=92.24 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 772 (1174)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.4e-07 Score=102.47 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+-+++|+++.|.||||||||||+..+++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-07 Score=114.46 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=65.4
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHH-HHHHHHhHhCCCEEEEEecCCChhHHhhhhheee-ec
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIV-SFLKHLVHITDATALISLLQPAPETFDLFDDVIL-MA 136 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~-~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv-L~ 136 (1174)
..+|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++..|.|+|++.|.+ +..+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceE
Confidence 3478999999999988 8999999999999999999998886 778888765688999998875 56678887642 44
Q ss_pred CCcEEE
Q 001048 137 EGKIVY 142 (1174)
Q Consensus 137 ~G~vvy 142 (1174)
.+++-+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 445443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=98.99 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=86.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCC---------CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH---HHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTG---------GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE---SIV 681 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e---~l~ 681 (1174)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.++. .....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4899999999999999999996431 145789999886532 112235544422 112211 111
Q ss_pred HHH--h--hc-cC-CCCC--HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH----HHh-hcCCcEEE
Q 001048 682 FSA--W--LR-LS-TQID--SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA----VEL-VANPSIIF 748 (1174)
Q Consensus 682 ~~~--~--~~-~~-~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia----~al-~~~p~ill 748 (1174)
... . +. .. .... ..+..+.+.++++.+++.+..--.+.+. ...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 100 0 00 00 1111 1222334567788777655431122221 123788888988887 555 444554
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-08 Score=103.44 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.0
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-----------cccceEEEEccC
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-----------TFARISGYCEQN 667 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~Q~ 667 (1174)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 8999999999999999999999776 4478999988765211 124557888873
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.8e-06 Score=94.29 Aligned_cols=80 Identities=8% Similarity=0.045 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC--CcChHHH---HHHHHHHHHHhHh
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN--GLDSSTT---FQIVSFLKHLVHI 109 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS--GLDS~sa---~~v~~~L~~la~~ 109 (1174)
.++++++.+++.+..+..+.. +|+||++|+ ++++.+|+++++||||+ ++|..+. .++++.|+++++.
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~-----ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNI-----MAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCT-----TSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCceEEeecCCCCccc-----CCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 457788999988876665543 999998765 68889999999999999 9998655 8888999999877
Q ss_pred CCCEEEEEecCCC
Q 001048 110 TDATALISLLQPA 122 (1174)
Q Consensus 110 ~~~tvI~sihQps 122 (1174)
.|.|||++.|...
T Consensus 170 ~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 170 TGCSIVFLHHASK 182 (279)
T ss_dssp HCCEEEEEEEC--
T ss_pred cCCEEEEEecCCC
Confidence 7899998766553
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-07 Score=99.23 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=31.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
....++|++++|+||||||||||+++|+|.. |.+.++|.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3566789999999999999999999999854 6678887664
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.3e-06 Score=103.50 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCCHHHHHHhcceeEEecC
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCT-IHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
-+|+|+.+|..+++.++.+++++++|||.. +||......+++.+.+.....++++++ ||+++ .+.+.+++..++.-.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccccc
Confidence 489999999999999999999999999996 999887777766666554445677775 88753 566677654444333
Q ss_pred c
Q 001048 803 G 803 (1174)
Q Consensus 803 G 803 (1174)
|
T Consensus 269 g 269 (773)
T 2xau_A 269 G 269 (773)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-07 Score=97.80 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred HHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCc----ChHHHHHHHHHHHHHhHhCCCEEE
Q 001048 40 LKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL----DSSTTFQIVSFLKHLVHITDATAL 115 (1174)
Q Consensus 40 l~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGL----DS~sa~~v~~~L~~la~~~~~tvI 115 (1174)
++.+||.+.++...+. || +|+.+|++++|||||+|| |+..+.++++.++++.+..|.|+|
T Consensus 119 l~~~gl~~~~~~~~~~-----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi 182 (207)
T 1znw_A 119 VDLAGARAIKKTMPEA-----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKV 182 (207)
T ss_dssp CCHHHHHHHHHHCTTS-----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEE
T ss_pred eCHHHHHHHHHhcCCc-----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEE
Confidence 5666776666666543 66 899999999999999998 778999999999999865678888
Q ss_pred EEecCCChhHHhhhhheeeec
Q 001048 116 ISLLQPAPETFDLFDDVILMA 136 (1174)
Q Consensus 116 ~sihQps~~i~~lfD~IivL~ 136 (1174)
++.| -..++.+.+|+|++|.
T Consensus 183 ~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 183 VVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp EECS-SHHHHHHHHHHHHC--
T ss_pred EECC-CHHHHHHHHHHHHHhc
Confidence 8765 4568889999999995
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.1e-06 Score=107.14 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHH-HHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT-FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa-~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
.|+|++ +++++++++++|++++|||||+|+|+... ..+++.|+.+++..|.++|++.|.+. .+-..+|++.++ +|+
T Consensus 852 f~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 566655 59999999999999999999999999984 55789999998655889999887653 344568998887 588
Q ss_pred EE--EeCCc
Q 001048 140 IV--YHGPL 146 (1174)
Q Consensus 140 vv--y~G~~ 146 (1174)
+. +.|+.
T Consensus 929 ~~~~~~~~~ 937 (1022)
T 2o8b_B 929 MACMVENEC 937 (1022)
T ss_dssp EEEC-----
T ss_pred EEEEEecCc
Confidence 87 55654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.4e-06 Score=88.91 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=65.6
Q ss_pred CCccccchhHHHHHHhcCCc--EeeeeCCCCCc--ChHHHHHHHHHHHHHhHhCCCEEEEEecCCC-------hhHHhhh
Q 001048 61 VSGGQKKRLTTGELIVGPTR--ALFMDEISNGL--DSSTTFQIVSFLKHLVHITDATALISLLQPA-------PETFDLF 129 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGL--DS~sa~~v~~~L~~la~~~~~tvI~sihQps-------~~i~~lf 129 (1174)
.|++|+++...+.....+|+ ++++||||+++ |+.....+++.|+++++..|.|+|++.|..+ ..+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58899888888777778999 99999999888 9999999999999998777889999888773 4578889
Q ss_pred hheeeecCCc
Q 001048 130 DDVILMAEGK 139 (1174)
Q Consensus 130 D~IivL~~G~ 139 (1174)
|+|++|.+.+
T Consensus 184 d~vi~l~~~~ 193 (235)
T 2w0m_A 184 DGIIRFRRMI 193 (235)
T ss_dssp SEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 9999997653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.2e-06 Score=94.40 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=82.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHH
Confidence 45677777899999999999999999999988875321 0 11 12234321 2333332
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
. .+.......+++.+..+ | .||.+|.+|++.|...+.++++.+.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 1 11111111122211111 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHc--CCEEEEEec
Q 001048 760 AAATVMRAVKNVVET--GRTVVCTIH 783 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~~--g~tvi~~~H 783 (1174)
...+...+++++++ |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33666677777644 677777754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=85.86 Aligned_cols=78 Identities=8% Similarity=0.017 Sum_probs=61.6
Q ss_pred CCccc--cchhHHHHHHhcC-CcEeeeeCCCCCcChHHH--------HHHHHHHHHHhHhCCCEEEEEecCCCh------
Q 001048 61 VSGGQ--KKRLTTGELIVGP-TRALFMDEISNGLDSSTT--------FQIVSFLKHLVHITDATALISLLQPAP------ 123 (1174)
Q Consensus 61 LSGGq--KkRvSIA~aLv~~-P~IL~LDEPTSGLDS~sa--------~~v~~~L~~la~~~~~tvI~sihQps~------ 123 (1174)
.|+++ +++++.+++++.+ |+++++||||+++|+... ..+++.|+++++..+.|+|++-|..+.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 56665 5678888899985 999999999999998542 456777888887778899887776542
Q ss_pred ------hHHhhhhheeeecCC
Q 001048 124 ------ETFDLFDDVILMAEG 138 (1174)
Q Consensus 124 ------~i~~lfD~IivL~~G 138 (1174)
.+...+|++++|.+.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 567789999999765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=91.06 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAATVMRAVKNVVETGRTVVCTI--HQPS 786 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~~ 786 (1174)
.+|+||+|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999999887 66666778889999 99999999998888877776543 77888888 7653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-06 Score=94.70 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=47.2
Q ss_pred cccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 46 DICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 46 ~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
.+..+.+.++ ||||||||++|||+++. +++|||||+|||+.. .+.++.+.+. .++|+.+|
T Consensus 89 ~~~~~~~~~~-----LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~ 148 (270)
T 3sop_A 89 EQYEKFLKEE-----VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIA 148 (270)
T ss_dssp HHHHHHHHHH-----SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEET
T ss_pred HHHHhhhHHh-----cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEe
Confidence 5566777655 99999999999999885 999999999999987 4555555543 67777664
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-07 Score=97.68 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=54.2
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHH-----HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTT-----GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSI-----A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
..++++++...+ ..+. ..+|||||||++| +++++.+|+++.|||||+++|..++..+.+.|+++..
T Consensus 105 ~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 105 SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 356777776433 2221 3499999999999 8999999999999999999999999999999987654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.88 E-value=9.1e-08 Score=113.92 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=81.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~Q~~~-~~~~l 674 (1174)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|+.. ..+..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 46789999999999 89999999999999999999654 367788886543211 1122345565532 33445
Q ss_pred CHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 675 TVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
.+.|++.....-+.. ......+..+.+++++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555321110100 00012223333444432 3788888898999999999987 78875
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-06 Score=97.04 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcCh
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 93 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS 93 (1174)
.+.++++|+.++ .+..++.+.. +|||||||++||++++.+|+||+||||++.+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 356788999998 6656676644 999999999999999999999999999999986
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-06 Score=94.04 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=35.8
Q ss_pred EEEEece-EEEEeeCCcccccccccccccccccceeEEeC---CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 573 TVTFEDL-RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRP---GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 573 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|+ ++.+. +++.+|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788888 76431 235799999999999 9999999999999999999999854
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.77 E-value=6.9e-06 Score=86.41 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 678999999999999999999999999874
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.9e-06 Score=90.47 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=62.4
Q ss_pred HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCc--EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTR--ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 39 vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
+++.+|+.+..+..+++ || |||++||++|+.+|+ +|+|| ||+|||+.+.. ++..+..|.|+|+
T Consensus 188 lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii 252 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 252 (302)
T ss_dssp EECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE
Confidence 56778888877777765 99 999999999999999 99999 99999998652 4444445777777
Q ss_pred EecCCC----hhHHhh----hhheeeecCCcE
Q 001048 117 SLLQPA----PETFDL----FDDVILMAEGKI 140 (1174)
Q Consensus 117 sihQps----~~i~~l----fD~IivL~~G~v 140 (1174)
..|-.. ...+.. .+.|..+..|+.
T Consensus 253 iThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 253 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 667322 113332 335566666654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.76 E-value=7e-06 Score=84.57 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=32.5
Q ss_pred ccc--ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 600 QLL--SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 600 ~iL--~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..+ +++++++.+| +++|+||||||||||+++|.+...
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 355 7899999999 999999999999999999988543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.74 E-value=4e-06 Score=94.42 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=40.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++++++++++|++++++|+||+||||++..|++... +..|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 478999999999999999999999999999999654 2357888877654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.73 E-value=2e-06 Score=93.92 Aligned_cols=63 Identities=21% Similarity=0.115 Sum_probs=45.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEE--------ECCeeCCc----ccccceEEEEc
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIR--------IGGYPKVQ----HTFARISGYCE 665 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~ 665 (1174)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8765 5678888 88877632 12445678888
Q ss_pred cCC
Q 001048 666 QND 668 (1174)
Q Consensus 666 Q~~ 668 (1174)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=84.46 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=24.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+++|||+++++|++++|+|++||||||+.+.|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.8e-05 Score=90.35 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred hHHHHHHHHhCCcccccccccCC-Cccc-CCccccchhHHHHHHh-------cCCcEeeeeCCCCCcChHH---------
Q 001048 34 LQTDYILKILGLDICADTMVGDP-MRRG-VSGGQKKRLTTGELIV-------GPTRALFMDEISNGLDSST--------- 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~-~~rG-LSGGqKkRvSIA~aLv-------~~P~IL~LDEPTSGLDS~s--------- 95 (1174)
+++..+.+.+++... +...+- ..+. =|++|++++.++++++ .+|+++++||||++||+..
T Consensus 180 ~~i~~i~q~~~~~~~--~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r 257 (349)
T 1pzn_A 180 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 257 (349)
T ss_dssp HHHHHHHHTTTCCHH--HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHH
Confidence 355667777776531 211110 0011 2678999999999999 6899999999999999852
Q ss_pred ---HHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 96 ---TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 96 ---a~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
..++++.|+++++..+.|+|++-|.. ...-..|++...+..|+++.+++.
T Consensus 258 ~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 258 QQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecCc
Confidence 35677778888877789999876643 344456677888889999888864
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8e-06 Score=101.44 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=72.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|...... ..++.+++..|...+... ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3467889999999999999999999999743321234666 455433211 112223333332211100 000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
.++.|+ ||...++ .......-..+..++++| |+.|+|+.+..
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011222 1111121 111222235678899999 99999988773
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCH
Q 001048 763 TVMRAVKNVVETGRTVVCTIHQPSI 787 (1174)
Q Consensus 763 ~i~~~l~~l~~~g~tvi~~~H~~~~ 787 (1174)
. ++.+.+.+.++|++.|..+.
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHHccCCEEEEecCCch
Confidence 3 33333458888999998653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.9e-05 Score=86.20 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEec
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIH 783 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 783 (1174)
.++.++++..+++..+.+|++++|.-..+..|..+ ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788899999999999999777774333445443 44556666665544 57777766
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.3e-06 Score=99.21 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH---hCCC-----EEEEEecCCChhHHhhhh
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH---ITDA-----TALISLLQPAPETFDLFD 130 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~---~~~~-----tvI~sihQps~~i~~lfD 130 (1174)
..+|||| |||+|| +++|++ |+|||+.++..+.+.|+++.+ ..|+ ||++.-|..+ ...+|
T Consensus 257 ~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad 323 (438)
T 2dpy_A 257 TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIAD 323 (438)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHH
T ss_pred HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhc
Confidence 4599999 999999 888887 999999999999999999875 2364 7776666665 57799
Q ss_pred heeeecCCcEEEeCCcchH
Q 001048 131 DVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 131 ~IivL~~G~vvy~G~~~~~ 149 (1174)
++++|.+|+++..|++++.
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHSSEEEEECHHHHHT
T ss_pred eEEEEeCcEEEEeCCHHHc
Confidence 9999999999999976543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-06 Score=92.63 Aligned_cols=82 Identities=9% Similarity=-0.059 Sum_probs=67.8
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccc----cchhHHHHHHhcCCcEeeeeCCCCC-------cChHHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQ----KKRLTTGELIVGPTRALFMDEISNG-------LDSSTTFQIVSF 102 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGq----KkRvSIA~aLv~~P~IL~LDEPTSG-------LDS~sa~~v~~~ 102 (1174)
+++.+.++.+++.+..+..+. .+|+|| +||++++++++.+|.++++||||++ ||+.++.++++.
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 68 ALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHHHHHHHTTCCEEECCE-----ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 457788999998876666543 388886 5799999999999999999999999 999999999999
Q ss_pred HHHHhHhCCCEEEEEecC
Q 001048 103 LKHLVHITDATALISLLQ 120 (1174)
Q Consensus 103 L~~la~~~~~tvI~sihQ 120 (1174)
+++..+..|+|++...|+
T Consensus 143 l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 988655568887765564
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.4e-05 Score=82.85 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=59.1
Q ss_pred cccCCCcccCCccccchh-HHHH---HHhcCCcEeeeeC--CCCCcChHHHHHHHHHHHHHhHhCCCEEEE-Eec--CCC
Q 001048 52 MVGDPMRRGVSGGQKKRL-TTGE---LIVGPTRALFMDE--ISNGLDSSTTFQIVSFLKHLVHITDATALI-SLL--QPA 122 (1174)
Q Consensus 52 ~VG~~~~rGLSGGqKkRv-SIA~---aLv~~P~IL~LDE--PTSGLDS~sa~~v~~~L~~la~~~~~tvI~-sih--Qps 122 (1174)
.+|. ....+|||||+++ ++++ |+..+|+||+||| ||..+|......+.+.|+ . ..++|+ |++ |.+
T Consensus 76 ~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 76 RVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGK 149 (189)
T ss_dssp ESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSS
T ss_pred ccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCC
Confidence 5554 2345999999998 4445 6899999999999 888888875554444444 2 334443 332 222
Q ss_pred hhHHhhhhheeeecCCcEEEeC
Q 001048 123 PETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 123 ~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+ ..+.|+|..+.+|++++-.
T Consensus 150 ~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 150 P--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C--CTTHHHHHTTCCSEEEECC
T ss_pred c--hHHHHHHeecCCcEEEEeC
Confidence 2 5688999999999998855
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.54 E-value=4.1e-05 Score=87.20 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCc--EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTR--ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 39 vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
+++.+|+.+..+..+++ || |||++||++|+.+|+ +|+|| ||+|||+.+.. ++..+..+.|+|+
T Consensus 245 lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii 309 (359)
T 2og2_A 245 LCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 309 (359)
T ss_dssp EEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE
Confidence 56678888877777755 99 999999999999999 99999 99999998653 3444445777777
Q ss_pred Eec
Q 001048 117 SLL 119 (1174)
Q Consensus 117 sih 119 (1174)
..|
T Consensus 310 iTh 312 (359)
T 2og2_A 310 LTK 312 (359)
T ss_dssp EES
T ss_pred Eec
Confidence 667
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=9.2e-06 Score=85.54 Aligned_cols=71 Identities=6% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH-HHHHhcceeEEe
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID-IFEAFDDLVLMK 800 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-~~~~~d~~~~l~ 800 (1174)
.+.|+.+|..+++.+..+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... ....+|.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888754333 3345565555555444332 356888888865321 134456555553
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=83.99 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=34.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCC
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVE---TGRTVVCTIHQP 785 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~ 785 (1174)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888887776655 578899999986
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=7.6e-05 Score=93.86 Aligned_cols=81 Identities=14% Similarity=0.022 Sum_probs=64.7
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHH-HHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI-VSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v-~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
.|+|++ |++.+...+++|++++|||||+|+|+.....+ ++.++.+.+..|.++|++.|.+ +..+++|++..+..|+
T Consensus 670 f~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 670 FMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVH 746 (800)
T ss_dssp CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEE
T ss_pred hhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEE
Confidence 455554 55555667999999999999999999887775 7888888764588999998886 4567899998888888
Q ss_pred EEEeC
Q 001048 140 IVYHG 144 (1174)
Q Consensus 140 vvy~G 144 (1174)
+.+..
T Consensus 747 ~~~~~ 751 (800)
T 1wb9_A 747 LDALE 751 (800)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.4e-05 Score=85.80 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++++|.|+||||||||+++|+|. .|+|.++++|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 35578999999999999999999999986 25678877764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=1.9e-05 Score=82.82 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=41.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE--EECCeeC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI--RIGGYPK 652 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 652 (1174)
....+..++..++|++++|+|||||||||++++|++... ..|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 456677888889999999999999999999999998653 13555 7777554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=4e-05 Score=78.78 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
+|++++|+||||||||||+++|++..+. ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999996542 24455544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00039 Score=77.44 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEecCC
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAATVMRAVKNVVE----TGRTVVCTIHQP 785 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~ 785 (1174)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+..... .+..+|.+|++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 456777777788888899999999998766532 22233333333221 235677888875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-06 Score=93.64 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH-hCCC-----EEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH-ITDA-----TALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~-~~~~-----tvI~sihQps~~i~~lfD~I 132 (1174)
..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|. ||+++-|... -..+|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4499999 899999 688877 999999999999999999875 4576 6666666555 4669999
Q ss_pred eeecCCcEEEeCCcchH
Q 001048 133 ILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 133 ivL~~G~vvy~G~~~~~ 149 (1174)
++|.+|+++..|+.++.
T Consensus 237 ~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 RSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHCSEEEEBCHHHHTT
T ss_pred EEeeCcEEEEeCCHHHc
Confidence 99999999999976543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00024 Score=79.34 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhh--cCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEecCCCHHHHHHhcce
Q 001048 726 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AATVMRAVKNVVET-GR--TVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+.+|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899886 4566665 78999998 7899876 66777888888754 43 5556666543 455555544
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=5.9e-05 Score=94.30 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=51.1
Q ss_pred CcccCCccccchhHHHHHH--hcCCcEeeeeCC---CCCcChHHH-HHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 57 MRRGVSGGQKKRLTTGELI--VGPTRALFMDEI---SNGLDSSTT-FQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 57 ~~rGLSGGqKkRvSIA~aL--v~~P~IL~LDEP---TSGLDS~sa-~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
...|+|+|+++++.+++++ +++|++++|||| ||+||..+. ..+++.|++ .|.|+|++.|.+.
T Consensus 632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFE 699 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHH
T ss_pred HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 3467999999999999999 999999999999 999999875 577777765 3778998888653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.40 E-value=2.7e-05 Score=89.39 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=77.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-~~~~lTv~ 677 (1174)
..+++++|+.+++|++++|+||||||||||+++|+|.. .|++...+.+. ......+|+++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 35554412111 111112456666543 12222221
Q ss_pred HHHHHHHhhc-cCCCCCHHHHHHHHHHHHHH---cCCCC-cc---cccc--c--CCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 678 ESIVFSAWLR-LSTQIDSKTKAEFVNEVLQT---IELDG-IK---DSLV--G--LPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 678 e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~---l~l~~-~~---~~~~--~--~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
.++ .+ .... ........+...++. +.+.. .. +.+. + ......+++|++||+..+.+++.+|+
T Consensus 229 ~~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 110 00 0000 000001112233320 00110 00 0000 0 00123478999999988888888888
Q ss_pred EEE-EeCCCC
Q 001048 746 IIF-MDEPTS 754 (1174)
Q Consensus 746 ill-lDEPts 754 (1174)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 876 898886
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=78.99 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=50.7
Q ss_pred cchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 66 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 66 KkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
.-|++||++|..+|++++||||| |..+...+ ++. +. .|.+++++.|.++ ..+.+||+++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 88886544 443 33 5889999999866 5788999999964
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7.6e-05 Score=79.71 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=67.8
Q ss_pred hHHHHHHHHhCCcccccccccCC-CcccCCccc-cchhHHHHHHhc-------CCcEeeeeCCCCCcChH-------H--
Q 001048 34 LQTDYILKILGLDICADTMVGDP-MRRGVSGGQ-KKRLTTGELIVG-------PTRALFMDEISNGLDSS-------T-- 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~-~~rGLSGGq-KkRvSIA~aLv~-------~P~IL~LDEPTSGLDS~-------s-- 95 (1174)
+++..+.+.+++... |..-+- ..+..++++ ++++..+.+++. +|++++|||||++||+. +
T Consensus 74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 356677777777632 211110 112345544 444667777776 99999999999999983 2
Q ss_pred ---HHHHHHHHHHHhHhCCCEEEEEecCCCh---hHHhhhhheeeecCCc
Q 001048 96 ---TFQIVSFLKHLVHITDATALISLLQPAP---ETFDLFDDVILMAEGK 139 (1174)
Q Consensus 96 ---a~~v~~~L~~la~~~~~tvI~sihQps~---~i~~lfD~IivL~~G~ 139 (1174)
..++++.|+++++..|.|+|++.|.... .+...+|++++|.+|+
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2378888888887778999988774432 3667799999998764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00018 Score=80.96 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=82.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..-|+++.+-+++|+++.|.|++|+|||||+..++..... +| ..+.|+.-+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHH
Confidence 3567777778999999999999999999999888742110 11 123444322 34333
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
... +.......+++.+..+ | ...||++|++|+..|...+.++++++.|+|...
T Consensus 111 l~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 221 1111111111111111 1 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHc-CCE--EEEEec
Q 001048 759 RAAATVMRAVKNVVET-GRT--VVCTIH 783 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~-g~t--vi~~~H 783 (1174)
...+.+.++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667777654 666 777766
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=77.66 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=26.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=74.80 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWL 686 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~ 686 (1174)
+-+++|+++.|.||+|+|||||+..++........ .+| ....+.|+.-+..+ ...+-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-----~gg-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-----GGY-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-----TTB-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-----cCC-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 57999999999999999999999988863110000 000 01223455443321 222222222111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhh----cCCcEEEEeCCCCCCCHH--
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGLDAR-- 759 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~----~~p~illlDEPtsgLD~~-- 759 (1174)
..+. +++++.+-+. . ..++. +.+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 ----g~~~-------~~~l~~l~~~--------~----~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA--------R----AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE--------E----CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred ----CCCH-------HHHHhceeEe--------e----cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1111 1233322110 0 12232 234555566666 578999999999866432
Q ss_pred ----------HHHHHHHHHHHHHHc-CCEEEEEecCC
Q 001048 760 ----------AAATVMRAVKNVVET-GRTVVCTIHQP 785 (1174)
Q Consensus 760 ----------~~~~i~~~l~~l~~~-g~tvi~~~H~~ 785 (1174)
....++..|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 124455566666654 88988888853
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.5e-05 Score=89.32 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=48.9
Q ss_pred cCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 742 ANPSIIFMDEPTSGLDA-RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|++..++....+++.--.+.|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 48999999999887664 6778888999888877999999999853221111111111013467777777754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=76.11 Aligned_cols=73 Identities=11% Similarity=-0.080 Sum_probs=54.7
Q ss_pred HHHHHHHhCCccc-ccccccCCCcccCCccccch-hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 36 TDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKR-LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 36 v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkR-vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
+.+.++..++... ..+++. .+||||||| +.++++++.+|.++++|||||+||.....++.+.|.+.... +.|
T Consensus 129 ~~~~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 4455566666542 244432 389999999 89999999999999999999999999999999999987643 444
Q ss_pred E
Q 001048 114 A 114 (1174)
Q Consensus 114 v 114 (1174)
.
T Consensus 203 ~ 203 (210)
T 1pui_A 203 V 203 (210)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.19 E-value=2.3e-05 Score=87.82 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=34.7
Q ss_pred cccccccceeEEeCCe------EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 598 RLQLLSDITGTFRPGI------LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge------~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.+..|++++..+.+++ ++||+||||||||||+++|.+...
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888888888777 999999999999999999998654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00053 Score=79.77 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++.+++++||+|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0002 Score=75.31 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=26.8
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++++|++++|+|+|||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66789999999999999999999999865
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00098 Score=75.28 Aligned_cols=145 Identities=22% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccccce-eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 601 LLSDIT-GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 601 iL~~vs-~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.|+.+- +-+++|+++.|.||+|+|||||+..++......... .|. ...+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~-----gg~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEK-----GGL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGG-----TCC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccccc-----CCC-------CCeEEEEECCCCC----CHHHH
Confidence 344432 579999999999999999999998887632100000 010 1233455443321 12221
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhh---cCCcEEEEeCCCCC
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 755 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~---~~p~illlDEPtsg 755 (1174)
......+ ..+. +++++.+ .+.. ..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~-------~~~~~~l--------~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDI-------DNVMNNI--------YYIR----AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCH-------HHHHHTE--------EEEE----CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCH-------HHHhccE--------EEEe----CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1121111 1111 1122211 1111 13333 346677788887 67999999999976
Q ss_pred CCH--------HH----HHHHHHHHHHHHHc-CCEEEEEecC
Q 001048 756 LDA--------RA----AATVMRAVKNVVET-GRTVVCTIHQ 784 (1174)
Q Consensus 756 LD~--------~~----~~~i~~~l~~l~~~-g~tvi~~~H~ 784 (1174)
.+. .. ..+++..|++++++ |.+||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 23455556666654 8899998774
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=74.93 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=25.8
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999998654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.08 E-value=6.2e-05 Score=78.88 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=32.2
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|++++|+|+||||||||++.|++.... ..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccC
Confidence 3578999999999999999999999986531 23556554433
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00033 Score=69.43 Aligned_cols=30 Identities=33% Similarity=0.721 Sum_probs=24.7
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=71.97 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.+|++++|+|||||||||++++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 445666543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00038 Score=80.86 Aligned_cols=46 Identities=22% Similarity=0.053 Sum_probs=36.4
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++++++ +|++++++|+|||||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577887 8999999999999999999999996542 246676655543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00056 Score=77.96 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCC
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEG 138 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G 138 (1174)
+||++|..+|++|++|||| |..+.. .+.+++. .|.++++++|..+.. +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~--~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA--KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH--HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH--HHHHHHhhhcCc
Confidence 8999999999999999999 655533 3333443 588999999987743 889999999665
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0002 Score=82.76 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00021 Score=79.87 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=41.4
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCC-cChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNG-LDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSG-LDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
+++|||||||+.+|++++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 569999999999999985 9999999985 999873 5666665444556666554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00033 Score=71.12 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00013 Score=87.84 Aligned_cols=43 Identities=33% Similarity=0.463 Sum_probs=34.5
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEE-ECCee
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIR-IGGYP 651 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 651 (1174)
..+++|++++|+|+||||||||+++|+|...+ .+| ++. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 35789999999999999999999999997652 244 564 77754
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0002 Score=80.67 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=41.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccc--------------cceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLS--------------DITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.|+|+++.++ .++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP------------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA------------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC------------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC------------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 467778876432 2345677 89999999999999999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00065 Score=75.90 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00058 Score=73.34 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+.....+.+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 456655553 34688999999999966 677776654444444433223455555544443333344
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00044 Score=83.84 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=40.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
..+++++++++ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45778888888 899999999999999999999999764 45688877664
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0023 Score=64.82 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999853
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=63.12 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEec
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVE--TGRTVVCTIH 783 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H 783 (1174)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666655555544322 1358888888
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00029 Score=71.47 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHH-hCCcccccccccCCCcccCCccccchhHHHHHHhcCCcE
Q 001048 35 QTDYILKI-LGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81 (1174)
Q Consensus 35 ~v~~vl~~-lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~I 81 (1174)
..+++++. +. ..||.||+ |+|||||||++|||+++++|++
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 45666666 54 47999997 5999999999999999999986
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=70.65 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=26.2
Q ss_pred ccccceeEEe---CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 601 LLSDITGTFR---PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 601 iL~~vs~~i~---~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
-|.++|+++. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3556666665 899999999999999999999998654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00057 Score=77.78 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999854
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0029 Score=64.63 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHhcCCcEeeeeCCCC-CcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChh
Q 001048 73 ELIVGPTRALFMDEISN-GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPE 124 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTS-GLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~ 124 (1174)
...+.+|++|+||||++ ++|......+.+.++.... .++++|+|.|.|..+
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34567899999999996 9999999999999988754 578899988888776
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0021 Score=75.90 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=38.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC------C----CeEEEEEEECCeeCC---cccccceEEEEccCCCCCCCCCHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT------G----GIIEGDIRIGGYPKV---QHTFARISGYCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~~---~~~~~~~~~~v~Q~~~~~~~lTv~e~l 680 (1174)
.++|+|+||+|||||+|.|+|... + .+..|.+.++|++.. ....++..++.+|....+...+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 589999999999999999999642 1 134688999997532 112223333444443334444444554
Q ss_pred HH
Q 001048 681 VF 682 (1174)
Q Consensus 681 ~~ 682 (1174)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0026 Score=65.50 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=27.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIEGDIRIGG 649 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~------~~~~~G~i~~~g 649 (1174)
.+++++++..++. .++++|++|+|||||++.+.+... .++..+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 5789999998887 568999999999999999997321 123455666655
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=67.95 Aligned_cols=29 Identities=31% Similarity=0.721 Sum_probs=24.1
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999885
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.001 Score=71.94 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 37 ~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
.+.|+. |.+..+..++. +|||||||+++ ++++.+|++++||||...+|.. ++++ .+.++++
T Consensus 100 ~~~L~~--l~~~~~~~~~~-----ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v 160 (245)
T 2jeo_A 100 HRTLKN--IVEGKTVEVPT-----YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFV 160 (245)
T ss_dssp HHHHHH--HHTTCCEEECC-----EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEE
T ss_pred HHHHHH--HHCCCCeeccc-----ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEE
Confidence 344444 45666666644 99999999988 5888999999999988777753 2222 3678888
Q ss_pred EecC
Q 001048 117 SLLQ 120 (1174)
Q Consensus 117 sihQ 120 (1174)
+.|.
T Consensus 161 ~th~ 164 (245)
T 2jeo_A 161 DTDS 164 (245)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8763
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=66.27 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=24.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0011 Score=68.84 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 368899999988885 689999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0044 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998754
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=68.76 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEE--------CCeeCCc----ccccceEEEEccC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRI--------GGYPKVQ----HTFARISGYCEQN 667 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~Q~ 667 (1174)
+.+++|+|||||||||+.++|++.... .+..|++.. +|.++.. ...++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999985421 134577665 5655431 1233456777765
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0072 Score=68.06 Aligned_cols=45 Identities=4% Similarity=0.133 Sum_probs=34.6
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 741 VANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 741 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
..+|++|++||+-. .-|..+...+...+..+.+.|+.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999865 2344778888889888877778888888754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0019 Score=66.35 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.2
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788889999999999999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0007 Score=74.95 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCcc----cccccccCCCcccCCccccchhHHH--HHHhcCCcEeeeeCCCCCcChHH
Q 001048 35 QTDYILKILGLDI----CADTMVGDPMRRGVSGGQKKRLTTG--ELIVGPTRALFMDEISNGLDSST 95 (1174)
Q Consensus 35 ~v~~vl~~lgL~~----~~dT~VG~~~~rGLSGGqKkRvSIA--~aLv~~P~IL~LDEPTSGLDS~s 95 (1174)
...+.++.+.-.- ...+.++. +.+.+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 4556677765331 01222322 3466999999999997 555 899999999999999865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0046 Score=66.25 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCccccch-hHHHHHHh--cCCcEeeeeCCCCCcChH-------H-----HHHHHHHHHHHhHhCCCEEEEEecCCChh-
Q 001048 61 VSGGQKKR-LTTGELIV--GPTRALFMDEISNGLDSS-------T-----TFQIVSFLKHLVHITDATALISLLQPAPE- 124 (1174)
Q Consensus 61 LSGGqKkR-vSIA~aLv--~~P~IL~LDEPTSGLDS~-------s-----a~~v~~~L~~la~~~~~tvI~sihQps~~- 124 (1174)
.++.+..+ +.-..+++ .+|+++++||||+++|+. + ...+++.|+++++..|.|||++-|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 45554332 33344444 589999999999999985 3 34577778888877789999876643321
Q ss_pred -----------------HHhhhhheeeecCCc
Q 001048 125 -----------------TFDLFDDVILMAEGK 139 (1174)
Q Consensus 125 -----------------i~~lfD~IivL~~G~ 139 (1174)
+-..+|++++|.+|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 222799999998764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00078 Score=76.85 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=29.5
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 46889999999999999999999985431 2355555443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.056 Score=61.35 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=28.1
Q ss_pred cccccce--eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 600 QLLSDIT--GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 600 ~iL~~vs--~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444442 3589999999999999999999988765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.002 Score=67.32 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00072 Score=77.53 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=29.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 456889999987 999999999999999998853
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0004 Score=71.76 Aligned_cols=80 Identities=5% Similarity=-0.092 Sum_probs=60.4
Q ss_pred CccccchhHHHH------HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 62 SGGQKKRLTTGE------LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 62 SGGqKkRvSIA~------aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
|+|+++|+.++. +++.+|+...+|+ |||+..... ++.++.+.. .+.++|.+-|.-..++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999999988 9999999999994 899988888 888887753 467888877752357788899999
Q ss_pred cCCcEEEeCCcch
Q 001048 136 AEGKIVYHGPLSY 148 (1174)
Q Consensus 136 ~~G~vvy~G~~~~ 148 (1174)
.+|+++.+|+++-
T Consensus 169 ~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 169 TNPRFIFCMAGDP 181 (189)
T ss_dssp HCGGGSCC-----
T ss_pred hCCcEEEeecCCc
Confidence 9999999998753
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.016 Score=68.33 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=73.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... .| ..+.|+.-+ ++..+-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g---------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--------EG---------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TC---------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CC---------CeEEEEECC------CCHHHH
Confidence 4567776779999999999999999999998887532100 01 112333221 232221
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
. .+.......+.+.... - ..|+..+.+|+.-|...+.+.++.+.|+|.. +.
T Consensus 245 ~------------------~R~~~~~~~i~~~~l~---~-----g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~- 295 (444)
T 2q6t_A 245 T------------------LRMMCSEARIDMNRVR---L-----GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL- 295 (444)
T ss_dssp H------------------HHHHHHHTTCCTTTCC---G-----GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH-
T ss_pred H------------------HHHHHHHcCCCHHHHh---C-----CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH-
Confidence 1 1111111111121111 1 1488888888888887777778888877643 32
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEec
Q 001048 760 AAATVMRAVKNVVE-TGRTVVCTIH 783 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~-~g~tvi~~~H 783 (1174)
.++...++++.+ .|..+|++-+
T Consensus 296 --~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 --MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcC
Confidence 334555565553 3555555543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0012 Score=80.95 Aligned_cols=89 Identities=8% Similarity=0.093 Sum_probs=62.6
Q ss_pred cccchhHHHHHHhcCCcEeeeeCC------CCCcChHHHHHHHHHHHHHhHhC-CCEEEEEecCCC---hhHHhhhh---
Q 001048 64 GQKKRLTTGELIVGPTRALFMDEI------SNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPA---PETFDLFD--- 130 (1174)
Q Consensus 64 GqKkRvSIA~aLv~~P~IL~LDEP------TSGLDS~sa~~v~~~L~~la~~~-~~tvI~sihQps---~~i~~lfD--- 130 (1174)
..++++.++.+....|+++++||| |+|||+..+.++.+.+++..+.. +.+++++.|.-. .+..++++
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 345677777777889999999999 99999999999999999965433 334444444322 23334433
Q ss_pred -----heeeecCCcEEEeCCcchHHHH
Q 001048 131 -----DVILMAEGKIVYHGPLSYSCKF 152 (1174)
Q Consensus 131 -----~IivL~~G~vvy~G~~~~~~~y 152 (1174)
.|+|+.++..+..|+.+++.+.
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHHHH
Confidence 3789999999999976554443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0012 Score=69.52 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=31.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE--EEEECC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG--DIRIGG 649 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g 649 (1174)
.+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 457899999999999999999999998654 1235 566654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0011 Score=74.59 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCC
Q 001048 599 LQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+++.+++.+++|+. ++|+|++||||||+.++|++..
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3588999999999998 9999999999999999999843
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.019 Score=65.50 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0092 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.011 Score=67.89 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0039 Score=65.01 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.011 Score=60.37 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0061 Score=61.86 Aligned_cols=38 Identities=37% Similarity=0.335 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC-CCeEEEEEEECCe
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKT-GGIIEGDIRIGGY 650 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~-~~~~~G~i~~~g~ 650 (1174)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987532 1223466665543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0059 Score=70.04 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=33.0
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---------CCeEEEEEEECCe
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---------GGIIEGDIRIGGY 650 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---------~~~~~G~i~~~g~ 650 (1174)
-..+..|..++|+|+||+|||||+|.|+|... -.+..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 33567888999999999999999999999621 1245677777653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0063 Score=62.42 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=25.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.003 Score=72.60 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=59.0
Q ss_pred cCCccccchhHHHHHHh-cCCcEeeeeC---CC------CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhh
Q 001048 60 GVSGGQKKRLTTGELIV-GPTRALFMDE---IS------NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLF 129 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv-~~P~IL~LDE---PT------SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lf 129 (1174)
.+|+|+++|..++.++. .+|++++||| |+ +++|...+..+.+.|+++.+..+.++++.- +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 36778888988887775 5999999999 64 689999999999999988655566777643 44 4677788
Q ss_pred hheeeecCCcEEEeCCc
Q 001048 130 DDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 130 D~IivL~~G~vvy~G~~ 146 (1174)
|++.++++ ++..|+.
T Consensus 336 ~~i~~i~~--~l~~~~~ 350 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEI 350 (365)
T ss_dssp HHHHHHHH--HTSCCCC
T ss_pred HHHHHHHH--Hhcccch
Confidence 88888864 4445443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0069 Score=61.98 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.4
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.066 Score=60.06 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.0
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778999999999999999999754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0023 Score=72.81 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred cccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34688889999999998 9999999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.006 Score=63.48 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0022 Score=71.26 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=34.8
Q ss_pred cc-ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 603 SD-ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 603 ~~-vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++ ++++.+ |++++++|++|+||||++..|++.... ..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 777776 999999999999999999999986531 13456554443
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.027 Score=59.47 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH---------QPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~~~~l~ 800 (1174)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++...+|.+.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 553 355666777777999999999 45567788888887753
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0097 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
|.++.|.|++||||||+.+.|+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0099 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.|++||||||+.+.|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0078 Score=65.25 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=24.4
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455566666666 8899999999999999999854
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0057 Score=65.93 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHH-hcCCcEeeee----CCCCCcChHHHHHHHHHHHHHhH
Q 001048 61 VSGGQKKRLTTGELI-VGPTRALFMD----EISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 61 LSGGqKkRvSIA~aL-v~~P~IL~LD----EPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
+|| |+ ++| +.+|++++|| |||+|||..++..+.+.|+...+
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 898 77 677 9999999999 99999999999999999988754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=62.80 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=63.45 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0078 Score=65.21 Aligned_cols=46 Identities=30% Similarity=0.316 Sum_probs=34.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 455554 6778899999999999999999999876531 345566643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.02 Score=65.59 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=47.1
Q ss_pred hhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 68 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 68 RvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
+.+|+++|..+|+++++|||| |..+. ..+++.. ..|.++++|+|..+ ..+.+||++.|..
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~--~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAA--ETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHH--TTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHH--hcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 679999999999999999999 66553 3445543 35789999988754 7788999988853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.028 Score=55.38 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=38.3
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE-EEEEecCCChhH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT-ALISLLQPAPET 125 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t-vI~sihQps~~i 125 (1174)
+++.+|++|+||||++ +|...+..+.+.++++... |++ +|++-|.|..+.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHHc
Confidence 4567899999999998 6665588888999887654 566 777777666554
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=60.11 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=59.65 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=62.91 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=58.68 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999854
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.012 Score=68.22 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=38.5
Q ss_pred cCCccccchhHHHHHHhcCCc---EeeeeCCC-CCcChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 60 GVSGGQKKRLTTGELIVGPTR---ALFMDEIS-NGLDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv~~P~---IL~LDEPT-SGLDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
+++++.++|++||++++.+|+ +|++|||| +|||+... +.++.+.. +.++|+-+|
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEE
Confidence 357788999999999999999 99999999 69998773 44455542 556665443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.019 Score=57.65 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEecCCCCCHHHHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVL 632 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l 632 (1174)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.022 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.019 Score=58.39 Aligned_cols=25 Identities=36% Similarity=0.278 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.024 Score=58.82 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.023 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.022 Score=62.79 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998644
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.026 Score=58.86 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.074 Score=62.77 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=60.9
Q ss_pred cCCccccchhHHHHHHh--cCCcEeeeeCCCCCcChH--------HHHHHHHHHHHHhHhCCCEEEEEecC---------
Q 001048 60 GVSGGQKKRLTTGELIV--GPTRALFMDEISNGLDSS--------TTFQIVSFLKHLVHITDATALISLLQ--------- 120 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv--~~P~IL~LDEPTSGLDS~--------sa~~v~~~L~~la~~~~~tvI~sihQ--------- 120 (1174)
++|++|.+ +.++.++ .+|+++++|+++...++. .-..+.+.|+++|+..+.+||+.-|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999886 6677776 689999999999988542 12677888999998888888886551
Q ss_pred --CC-------hhHHhhhhheeeecCCcE
Q 001048 121 --PA-------PETFDLFDDVILMAEGKI 140 (1174)
Q Consensus 121 --ps-------~~i~~lfD~IivL~~G~v 140 (1174)
|. ..+-..+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 256778999999987763
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.026 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.027 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.025 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.383 Sum_probs=20.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|+|++|||||||++.|.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999874
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.026 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998643
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.24 Score=59.25 Aligned_cols=34 Identities=21% Similarity=0.068 Sum_probs=27.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-|+.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555544689999999999999999999877654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.026 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.04 Score=63.54 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCccc--c-cccccCCCcccCCc-cccchhHHHHHHh--cCCcEeeeeCCCCCcChHHH------------
Q 001048 35 QTDYILKILGLDIC--A-DTMVGDPMRRGVSG-GQKKRLTTGELIV--GPTRALFMDEISNGLDSSTT------------ 96 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~--~-dT~VG~~~~rGLSG-GqKkRvSIA~aLv--~~P~IL~LDEPTSGLDS~sa------------ 96 (1174)
++..+.+.+|+..- . |-.+.. -.++ .+++.+..+.+++ .+|+++++||||+.+|+...
T Consensus 228 rl~~~a~~~gl~~~~vleni~~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 228 RLVSIAQRFGLDPDDALNNVAYAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp HHHHHHHHTTCCHHHHHHTEEEEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred HHHHHHHHcCCChHhHhhcEEEec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 45556777777421 1 112221 1222 2334444444443 47999999999999997533
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCC------------------hhHHhhhhheeeecCCc
Q 001048 97 FQIVSFLKHLVHITDATALISLLQPA------------------PETFDLFDDVILMAEGK 139 (1174)
Q Consensus 97 ~~v~~~L~~la~~~~~tvI~sihQps------------------~~i~~lfD~IivL~~G~ 139 (1174)
.++++.|+++++..|.|||++.|-.+ ..+-..+|.++.|.+|+
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 67888999999888999999887621 22345679999998764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.083 Score=59.93 Aligned_cols=64 Identities=6% Similarity=0.103 Sum_probs=45.2
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
+.++|+|+++|||++ ||..+...+.+.|++.. .+.++|++.|.|..-.-. +.+....+...|++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~~ 194 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAPS 194 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCCC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCcC
Confidence 678999999999999 99999999999998854 356788888887632111 33455666666553
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.025 Score=61.77 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.014 Score=60.16 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.6
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999854
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.03 Score=58.52 Aligned_cols=26 Identities=42% Similarity=0.481 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.032 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.015 Score=60.95 Aligned_cols=24 Identities=54% Similarity=0.743 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+++|.|++||||||+++.|+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.037 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.041 Score=60.91 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=31.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888888 7999999999999999999998764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.033 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.|.|++||||||+.+.|+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.15 Score=68.49 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999988763
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.04 Score=58.00 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|-.+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.046 Score=64.20 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=29.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 44666666689999999999999999999877764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.032 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.058 Score=54.92 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999987665
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.24 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.039 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 36899999999999999998854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.096 Score=53.88 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999976
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.039 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.046 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.046 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.046 Score=57.89 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.049 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.042 Score=54.45 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.045 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.056 Score=55.96 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.047 Score=61.92 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.052 Score=53.95 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.4
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.051 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999884
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.048 Score=56.56 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.048 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.049 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.056 Score=56.60 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.059 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.095 Score=53.71 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=28.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++.-..+ .|..++|+||+|+|||||...|+.+
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566655554 5889999999999999999999864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.19 Score=53.50 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred HHHHHh--cCCcEeeeeCCCCCc--ChHHHHHHHHHHHHHhHhCCCEEEEEecCCChh-------HHhhhhheeeecC
Q 001048 71 TGELIV--GPTRALFMDEISNGL--DSSTTFQIVSFLKHLVHITDATALISLLQPAPE-------TFDLFDDVILMAE 137 (1174)
Q Consensus 71 IA~aLv--~~P~IL~LDEPTSGL--DS~sa~~v~~~L~~la~~~~~tvI~sihQps~~-------i~~lfD~IivL~~ 137 (1174)
..+.++ .+|+++++|++|+.+ |.....+.+..|.+.++..|.|++++.|..... +.+.+|.|+.|..
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 334444 579999999999988 665667777788888777889999987766542 4577899999964
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.049 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.063 Score=58.21 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=92.50 E-value=0.046 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.048 Score=57.47 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.026 Score=62.71 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=42.0
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQ 120 (1174)
++..+|||++|||+++.+|+.++| +||+.+...+++.+++..+..+.|+|+..|-
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 455669999999999999995555 6777777777888887765557777776674
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.062 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.052 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.061 Score=55.04 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999863
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.053 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.054 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.052 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.044 Score=64.97 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=59.3
Q ss_pred HHHHHHhCCccccc--ccccCCCcccCCccccchh----------HHHHHHhcCCc-EeeeeCCCCCcChHHHHHHHHHH
Q 001048 37 DYILKILGLDICAD--TMVGDPMRRGVSGGQKKRL----------TTGELIVGPTR-ALFMDEISNGLDSSTTFQIVSFL 103 (1174)
Q Consensus 37 ~~vl~~lgL~~~~d--T~VG~~~~rGLSGGqKkRv----------SIA~aLv~~P~-IL~LDEPTSGLDS~sa~~v~~~L 103 (1174)
.++++..|+.+..+ ..+. ..+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+
T Consensus 247 ~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l 321 (512)
T 2ius_A 247 YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELI 321 (512)
T ss_dssp HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHH
Confidence 57899999887543 2232 24899999874 35677788898 89999999999843 34566666
Q ss_pred HHHhH---hCCCEEEEEecCCChh
Q 001048 104 KHLVH---ITDATALISLLQPAPE 124 (1174)
Q Consensus 104 ~~la~---~~~~tvI~sihQps~~ 124 (1174)
.++++ ..|.++|++.|.|+.+
T Consensus 322 ~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 322 ARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHHHhhhCCcEEEEEecCCccc
Confidence 66653 3466999999999844
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.071 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.055 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.054 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.055 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=92.28 E-value=0.051 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.067 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.065 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.057 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.071 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.054 Score=62.76 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=52.7
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
..+|+|||||+++|++|...|.|+++ +++|..++ ..++.+++..+..+.+++.+--.....+-+++|.|.=
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 34999999999999999999999999 99999887 5555555554445666664333444567777777653
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.057 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57999999999999999998854
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.055 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.07 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.068 Score=59.32 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999853
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.051 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.071 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-+++|.|++||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.057 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.061 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998853
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.062 Score=58.72 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999874
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.12 Score=57.78 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++.++.|+||+|||||||...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.064 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999964
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.072 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.065 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.055 Score=62.59 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 743 NPSIIFMDEPTSGLD---ARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 743 ~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 577888888877663 56666777777777777888888888765
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.067 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.066 Score=54.69 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4699999999999999999874
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.077 Score=59.12 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.068 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=91.70 E-value=0.07 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.07 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999985
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.072 Score=56.37 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.2
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+|.++.|.|++||||||+.+.|+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.071 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.067 Score=60.96 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||+|.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999984
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.59 E-value=0.087 Score=55.77 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=30.7
Q ss_pred cCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEecCC
Q 001048 742 ANPSIIFMDEPTSGL-DARAAATVMRAVKNVVETGRT-VVCTIHQP 785 (1174)
Q Consensus 742 ~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~ 785 (1174)
.+|.++++||.-.-- +......+.+.++...+.++. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233367788888887766655 77877753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.053 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+-+++|.||+||||||+.+.|+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.085 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.099 Score=54.75 Aligned_cols=27 Identities=41% Similarity=0.569 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+|.+++|.|++||||||+.+.|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999997643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.076 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.072 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.085 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.086 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999998643
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.056 Score=56.68 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=28.5
Q ss_pred hhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 001048 740 LVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQ 784 (1174)
Q Consensus 740 l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 784 (1174)
+..+|+++++||+-. ..+.......++.+..+...|..++.++|-
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 446899999999864 233222223333344445568899999983
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.089 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.=.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467999999999999999998743
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.078 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=91.36 E-value=0.088 Score=56.99 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.079 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.079 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.095 Score=55.32 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.086 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++..++.|+||+||||+|..+.|+-.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.082 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=91.24 E-value=0.085 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.082 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.4 Score=50.30 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=41.3
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC---------CCHHHHHHhcceeEE
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ---------PSIDIFEAFDDLVLM 799 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~~~~~~d~~~~l 799 (1174)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++...+|.+.-|
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 6789999999977654 666666666679999999999 666777777877665
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.39 Score=49.84 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH---------QPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~~~~l~ 800 (1174)
+.+++++||.-- +|.. .++.+++++..|+.||++-+ .++.++...+|.+.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999866 6543 33777777777999999999 66678888888887763
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.094 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.088 Score=57.56 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.091 Score=57.67 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.9
Q ss_pred eEEEEecCCCCCHHHHHHHHh
Q 001048 613 ILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~ 633 (1174)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.086 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.081 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.088 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.089 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.09 Score=54.27 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.97 E-value=0.086 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.19 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46999999999999999999854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.086 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4699999999999999999874
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.1 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.1 Score=57.97 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
|...+.|.||+|+||||+.++|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999854
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.093 Score=53.82 Aligned_cols=21 Identities=38% Similarity=0.763 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999986
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.093 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.87 E-value=0.088 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999873
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=90.86 E-value=0.12 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=90.85 E-value=0.11 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.095 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.11 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.11 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.13 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+.+++|+||+|||||||...|+-...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986553
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.11 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.13 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.1 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=90.66 E-value=0.1 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.11 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1174 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-08 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-10 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-07 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-06 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-07 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-27 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-08 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-27 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-06 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-08 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-06 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-04 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-04 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-06 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-24 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-06 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-22 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-05 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-05 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-05 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 2e-29
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 19/224 (8%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 656
+ L ++ + G +T ++G +G+GK+TL++V++G + G + + + +
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDS----------KTKAEFVNEVLQ 706
+ Q +TV E+++ + ++S + E ++L+
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
++L + D G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 137 FLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 767 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
V + G T + H+ + D L +M N G+II G
Sbjct: 192 HVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 53.1 bits (127), Expect = 6e-08
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
IL+ L L D G+ +SGGQ K + G ++ + + MDE G+
Sbjct: 134 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 188
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
I + + L T LI + D + +M G+I+ G
Sbjct: 189 IFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGR 233
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (286), Expect = 7e-29
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTF 657
++ + T + G L+G SG GKTT + +++G + EG I G
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
R Q+ P++TV E+I F ++ + + V + ++++ + +
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGR 776
LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + +
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 777 TVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
T + H D EA D + +M G+++ G
Sbjct: 189 TTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 58.6 bits (142), Expect = 7e-10
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 96
+ ++L ++ + +SGGQ++R+ IV L MDE + LD+
Sbjct: 118 RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 172
Query: 97 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ + +K L T + E + D + +M G+++ G
Sbjct: 173 VAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGS 220
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 7e-29
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 17/227 (7%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGG 649
+ + L ++ + G ++MG SG+GK+T+++++ + T G + +I+
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 650 YPKVQHTFARIS--GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
+ T R G+ Q P +T E++ + + + E L+
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY---RGAMSGEERRKRALEC 128
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
+++ +++ N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 129 LKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 768 VKNVV-ETGRTVVCTIHQPSIDIFEA--FDDLVLMKNGGRIIYFGPL 811
+K + E G+TVV H DI A + ++ +K+ G + L
Sbjct: 188 LKKLNEEDGKTVVVVTH----DINVARFGERIIYLKD-GEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 49.4 bits (118), Expect = 6e-07
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 62 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 121
SGGQ++R+ + + D+ + LDS T +I+ LK L T ++
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD- 205
Query: 122 APETFDLFDDVILMAEGKIVYHGPL 146
+ +I + +G++ L
Sbjct: 206 -INVARFGERIIYLKDGEVEREEKL 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 111 bits (279), Expect = 6e-28
Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 656
+ + I G + L+G +GAGKTT + ++G R G I + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
+ P +TV E+++ A+ R D + + + +K+
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS--LFPRLKER 132
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
L L G LS +++ L I L++ P ++ MDEP+ GL + V ++ + + G
Sbjct: 133 LKQLGG--TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 777 TVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
T++ + A +++ G+I+ G
Sbjct: 191 TILLVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 46.4 bits (110), Expect = 8e-06
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
L + G +SGG+++ L G ++ + L MDE S GL +
Sbjct: 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ ++ + L+ Q A + ++ G+IV G
Sbjct: 178 VFEVIQKINQEGTTILLVE--QNALGALKVAHYGYVLETGQIVLEGK 222
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 112 bits (281), Expect = 7e-28
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 20/209 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 661
L +I G + A+ G +G+GKT+L+ ++ G EG I+ G R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721
+C Q P T++E+I+F + K+ + + ++++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 782 IHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ D ++++ G ++G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.7 bits (121), Expect = 4e-07
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 40 LKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 99
I +T++G+ +SGGQ+ R++ + +D LD T Q+
Sbjct: 139 QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197
Query: 100 VSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ + T ++ + E D ++++ +G ++G
Sbjct: 198 FESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGT 240
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 109 bits (273), Expect = 5e-27
Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 23/240 (9%)
Query: 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633
+ F ++ + + + L +I G AL+G SG+GK+T+ +++
Sbjct: 14 LEFRNVTF-----------TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 634 GRKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690
I EG I + G+ + QN +
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750
QI+ + + + + ++D D+++G GV LS QR+R+ IA L+ + I+ +D
Sbjct: 121 QIEEAARMAYAMDFIN--KMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILD 177
Query: 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
E TS LD + + A+ + + RT + H+ S E D++V++++ G I+ G
Sbjct: 178 EATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 54.1 bits (130), Expect = 2e-08
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 22 MKAISAEGLENSLQTDYILK-ILGLDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGP 78
+ S E +E + + Y + I +D DT++G GV SGGQ++R+ ++
Sbjct: 114 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG---ENGVLLSGGQRQRIAIARALLRD 170
Query: 79 TRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEG 138
+ L +DE ++ LD+ + I + L L + T+L+ + T + D+++++ +G
Sbjct: 171 SPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDG 226
Query: 139 KIVYHGP 145
IV G
Sbjct: 227 IIVERGT 233
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 108 bits (272), Expect = 7e-27
Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 22/239 (9%)
Query: 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633
+ + + + +N +L DI + G A +G+SG GK+TL++++
Sbjct: 17 IDIDHVSFQ-----------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
Query: 634 GRKTGGIIEGDIRIGGYP--KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ 691
+ G I I G+ R Q D + TV+E+I+ +
Sbjct: 66 RFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 123
Query: 692 IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751
+ K ++ + L D+ VG GV LS Q++RL+IA + NP I+ +DE
Sbjct: 124 VVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDE 180
Query: 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
TS LD + + + A+ + + RT + H+ S D +V+++N G I+ G
Sbjct: 181 ATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN-GHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 49.0 bits (117), Expect = 1e-06
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 42 ILGLDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 99
I+ L DT VG RGV SGGQK+RL+ + + L +DE ++ LD + I
Sbjct: 137 IMNLPQGYDTEVG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193
Query: 100 VSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
L L D T LI + T D ++++ G IV G
Sbjct: 194 QEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 235
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 19/225 (8%)
Query: 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY-- 650
+Q L++++ G + ++G SGAGK+TL+ ++ + EG + + G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 69
Query: 651 ----PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
R G Q+ + TV ++ L V E+L
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLS 126
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ L DS LS Q++R+ IA L +NP ++ DE TS LD +++
Sbjct: 127 LVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 767 AVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+K++ G T++ H +D+ + D V + + G +I
Sbjct: 182 LLKDINRRLGLTILLITH--EMDVVKRICDCVAVISNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 54.5 bits (131), Expect = 2e-08
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
+L ++GL D+ + +SGGQK+R+ + + L DE ++ LD +TT
Sbjct: 124 LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
I+ LK + T L+ + + D V +++ G+++
Sbjct: 179 ILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 224
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (267), Expect = 2e-26
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 14/215 (6%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQH 655
+ ++L I+ G + L+G +GAGKTT + ++S + + GI+ + + H
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
++ Y + N+ E + F A S E V + L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
V S ++L IA L+ NP + +DEPTSGLD A V + +K + G
Sbjct: 129 DRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
T++ + H ++ D + L+ N G I+ G
Sbjct: 184 LTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 47.7 bits (113), Expect = 3e-06
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 96
+ +I GL V S G ++L ++ R +DE ++GLD
Sbjct: 115 ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 97 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGC 156
++ LK + S E L D + L+ G IV G +
Sbjct: 170 REVRKILKQASQEGLTILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEEL------- 220
Query: 157 GFRCPDRKGVADFLQEVI 174
+ + + +EV+
Sbjct: 221 -KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (268), Expect = 3e-26
Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 32/231 (13%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP------- 651
++L ++ R G + +++G SG+GK+T + ++ + EG I + G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 72
Query: 652 ---------KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVN 702
Q+ ++TV E+++ + Q+ +K +
Sbjct: 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-----IQVLGLSKHDARE 127
Query: 703 EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
L+ + GI + G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 128 RALKYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 186
Query: 763 TVMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
V+R ++ + E G+T+V H ++ A ++ + G+I G
Sbjct: 187 EVLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQ-GKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
L +G+D A +SGGQ++R++ + L DE ++ LD +
Sbjct: 132 YLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
++ ++ L +++ + VI + +GKI G
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEM--GFARHVSSHVIFLHQGKIEEEGD 232
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 1e-25
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 28/219 (12%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTFA 658
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
Y Q V + KT+ E +N+V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDDKLGRST 123
Query: 719 GLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAATVMRAVKNV 771
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
+ G +V + H + L+K G+++ G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (96), Expect = 4e-04
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT-------RALFMDEISN 89
+ + L LD +SGG+ +R+ +++ T + L +DE N
Sbjct: 107 NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 90 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
LD + + L L A + S T L+ GK++ G
Sbjct: 162 SLDVAQQSALDKILSALCQQGLAIVMSS--HDLNHTLRHAHRAWLLKGGKMLASGR 215
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (256), Expect = 2e-25
Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 659
+L IT T G + G +G GKTTL+ +S ++G+I G P
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP--ITKVKG 70
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+ + I I+VE+ + A L K + + L+++E+ +K
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTV 778
+ LS +R+ +A L+ N I +D+P +D + V++++ ++ E G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 779 VCTIHQPSI 787
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 3e-24
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633
+TF ++R+ + +L +I + + G + ++G SG+GK+TL ++
Sbjct: 2 ITFRNIRF-----------RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
Query: 634 GRKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690
G + I G+ + R G Q D N ++ ++I +
Sbjct: 51 RFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVE 107
Query: 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750
++ K ++ + EL +++VG G LS QR+R+ IA LV NP I+ D
Sbjct: 108 KVIYAAKLAGAHDFIS--ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFD 164
Query: 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
E TS LD + +MR + + + GRTV+ H+ S + D +++M+ G+I+ G
Sbjct: 165 EATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
Query: 22 MKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81
+S E + + + + + G+SGGQ++R+ +V +
Sbjct: 101 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160
Query: 82 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141
L DE ++ LD + I+ + + T +I + T D +I+M +GKIV
Sbjct: 161 LIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEKGKIV 216
Query: 142 YHGP 145
G
Sbjct: 217 EQGK 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 99 bits (249), Expect = 7e-24
Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 14/221 (6%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--- 651
N+ + +L +T T RPG +TAL+G +G+GK+T+ +L G + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ 80
Query: 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIEL 710
R Q + +++E+I + + + +I + + + L
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GL 137
Query: 711 DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770
D+ V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + +
Sbjct: 138 PQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 771 VVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
E R+V+ S + E D ++ ++ G I G
Sbjct: 197 SPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (123), Expect = 2e-07
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 11 GIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70
G+ P ++ A G I GL DT V + + +SGGQ++ +
Sbjct: 111 GLTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVA 161
Query: 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD 130
++ L +D+ ++ LD+++ Q+ L + L+ + D
Sbjct: 162 LARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQAD 219
Query: 131 DVILMAEGKIVYHGP 145
++ + G I G
Sbjct: 220 HILFLEGGAIREGGT 234
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 1e-22
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658
+ + DI G +G SG GK+TL+ +++G +T I GD+ IG A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 659 RIS-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
G Q+ P+++V E++ F L + + VN+V + ++L + D
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK 127
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGR 776
LS QR+R+ I LVA PS+ +DEP S LDA + + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
T++ H D +++ + GR+ G
Sbjct: 183 TMIYVTH--DQVEAMTLADKIVVLDAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 46.5 bits (110), Expect = 6e-06
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 96
+ + ++L L D +SGGQ++R+ G +V +DE + LD++
Sbjct: 112 NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 97 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
Q+ + L T + E L D ++++ G++ G
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGK 214
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 94.2 bits (234), Expect = 5e-22
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 12/214 (5%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHT 656
Q+L DI+ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLEN 73
Query: 657 FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
+ G+ Q+ E + T D + + ++
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRE--NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + + V +A+ ++++ GR
Sbjct: 132 EVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GR 189
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
T + H+ S D + ++ G+I G
Sbjct: 190 TTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 43.3 bits (102), Expect = 8e-05
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 45 LDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSF 102
++ D + + RGV SGGQ++RL + + L +DE + LDS + +
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 103 LKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
L L+ T L+ + T D + + +G+I G
Sbjct: 182 LDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.8 bits (217), Expect = 9e-20
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGY 650
F + ++ L ++ G ++G SGAGKTT M +++G TG + D +
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 651 PKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
K+ R G Q PN+T E+I F ++ + + V EV + ++
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILD 129
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
+ + + LS Q++R+ +A LV +PS++ +DEP S LDAR + VK
Sbjct: 130 IHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 770 NVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
V G T++ H P+ DIF D + ++ G+++ G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 44.7 bits (105), Expect = 3e-05
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 45 LDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLK 104
I V + R +SG Q++R+ +V L +DE + LD+ + +K
Sbjct: 125 AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 105 HLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ T L+ PA + F + D V ++ +GK+V G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGK 224
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.1 bits (213), Expect = 3e-19
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQHTFA 658
+ +++ + G L+G SG GKTT + +++G + G I GD + K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 659 RISG--YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS 716
+ Q+ P++TV ++I F LR ++ + + V EV + + L + +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETG 775
LS QR+R+ + +V P + MDEP S LDA+ + +K + + G
Sbjct: 136 KPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 776 RTVVCTIHQPSIDIFEAF---DDLVLMKNGGRIIYFGP 810
T + H D EA D + +M G + G
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 49.5 bits (118), Expect = 6e-07
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 96
+ ++LGL + + +SGGQ++R+ G IV + MDE + LD+
Sbjct: 121 REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 97 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
++ + LK L T + E + D + +M G + G
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.0 bits (202), Expect = 7e-18
Identities = 42/211 (19%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR-I 660
L +++ G ++G +GAGKT +++++G G I + G + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
+ QN P++ V++++ F ++ + V + + ++++ + D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVV 779
LS +++R+ +A LV NP I+ +DEP S LD R + + + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810
H D + + G++I G
Sbjct: 183 HITH--DQTEARIMADRIAVVMDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 43.1 bits (101), Expect = 8e-05
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 98
+ L ++ D +SGG+++R+ +V + L +DE + LD T
Sbjct: 111 TARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 99 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
L L T L E + D + ++ +GK++ G
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGK 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.1 bits (179), Expect = 9e-15
Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 16/202 (7%)
Query: 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS-GYCEQNDI 669
L+G +GAGK+ +++++G G++R+ G R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729
P+++V +I + + D + V E+ + + + + D LS
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLSGG 130
Query: 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSID 788
+R+R+ +A LV P ++ +DEP S +D + +M ++ V E ++ H +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-E 189
Query: 789 IFEAFDDLVLMKNGGRIIYFGP 810
D++ +M N GRI+ G
Sbjct: 190 AAMLADEVAVMLN-GRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.5 bits (89), Expect = 0.002
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 45 LDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLK 104
+ + D +SGG+++R+ +V R L +DE + +D T ++ L+
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Query: 105 HLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGP 145
+ D L E L D+V +M G+IV G
Sbjct: 171 FVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGK 210
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.4 bits (114), Expect = 7e-07
Identities = 22/195 (11%), Positives = 42/195 (21%), Gaps = 36/195 (18%)
Query: 616 ALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLT 735
++ I S + + S E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 736 IAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795
+I +DE + + + + VV TI + +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 796 LVLMKNGGRIIYFGP 810
+ + +I P
Sbjct: 149 IRRLPG-AVLIELTP 162
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1174 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.92 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.92 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.92 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.92 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.92 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.91 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.9 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.88 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.88 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.88 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.87 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.87 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.87 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.87 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.86 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.82 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.79 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.44 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.67 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.01 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.55 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.49 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.94 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.54 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.36 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.22 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.16 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.01 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.97 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.84 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.79 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.52 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.5 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.47 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.42 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.14 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.1 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.05 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.02 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.85 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.82 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.72 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.71 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.54 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.41 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.26 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.24 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.2 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.2 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.18 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.16 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.1 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.08 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.98 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.91 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.88 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.69 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.57 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.56 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.53 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.33 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 93.23 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.06 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.97 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.83 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.82 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.8 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.67 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.65 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.6 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.53 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.44 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.42 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.39 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.35 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.21 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.17 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.08 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.99 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.78 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.69 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.38 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.17 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.16 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.08 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.07 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.07 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.97 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.9 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.89 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.85 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.77 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.76 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.73 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.66 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.6 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.57 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.55 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.33 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.26 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.12 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.06 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.05 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.03 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.85 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.84 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.82 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.7 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.67 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.53 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.5 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.49 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.4 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.19 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.97 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.87 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.73 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.63 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.48 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.48 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.33 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.17 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.14 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.13 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.06 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.05 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.87 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.64 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.45 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.44 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.4 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.06 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.98 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.91 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.87 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.86 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.79 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.76 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.73 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.45 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.15 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.09 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.78 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.62 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.51 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.4 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.01 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.89 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.63 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.62 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.23 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.94 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.66 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.14 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.54 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.46 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 81.63 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.41 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.08 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.64 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.2 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 80.1 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-49 Score=422.23 Aligned_cols=215 Identities=23% Similarity=0.357 Sum_probs=185.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||++++ +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 38899998754 35689999999999999999999999999999999999988 5699999999997
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ...++.+|||||++.+++++||+||+.|+...+ ..++++.+++++++++.++|++..|+.. .+||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 64 234567999999999999999999999876554 4577888899999999999999888765 47999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|+|++|||++ ++.+.+|++++|. +|++++.|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999975 6778889999887 599999999
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-50 Score=422.65 Aligned_cols=214 Identities=27% Similarity=0.400 Sum_probs=154.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
|+++||++++ +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.+||+++.
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 5788888754 35689999999999999999999999999999999999987 56999999999876
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..+|.+|||||++.+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+... .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHH
Confidence 43 34567999999999999999999999987654 34456677889999999999998888754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|+|++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 99999999999999999999999999999999999999965 5999999999975 6777789998887 5999999997
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.8e-49 Score=418.07 Aligned_cols=215 Identities=24% Similarity=0.349 Sum_probs=191.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||++.+ +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 47889998864 35689999999999999999999999999999999999988 5699999999886
Q ss_pred Ccc-------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQH-------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~-------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
... ..++.+|||+|++.+++.+||+||+.++..++ ..+.++.+++++++++.++|++..|+.. ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 421 12567999999999999999999999998765 4567788899999999999999888775 46
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.+|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999766 999999999975 6677789888887 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 218 iv~~G~~~ 225 (240)
T d1g2912 218 LQQVGSPD 225 (240)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999974
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-49 Score=421.25 Aligned_cols=217 Identities=25% Similarity=0.382 Sum_probs=191.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||++++. .++..+|+||||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 378899998652 234689999999999999999999999999999999999987 5699999999986
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. ...++.+|||+|++.++|++||+||+.|+...+ ..++++.+++++++++.+||.+..|...+ +|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hC
Confidence 42 123567999999999999999999999986543 45677888999999999999988888754 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+++|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++ ++.+.+|++++|. +|++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~-~G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999755 999999999975 6778889999987 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+++
T Consensus 220 v~~g~~~ 226 (242)
T d1oxxk2 220 VQVGKPE 226 (242)
T ss_dssp EEEECHH
T ss_pred EEEcCHH
Confidence 9999974
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.3e-49 Score=416.64 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=190.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||++++... ....++|+||||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 6789999766421 123468999999999999999999999999999999999987 56999999999874
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..|+.+|||||++.+++.+||+||+.++..++ ..++++.+++++++++.+||.+..|+.. ++||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 32 23467999999999999999999999987654 3456677888999999999998888765 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++...+|++++|. +|+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999776 999999999875 5666788888887 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
Confidence 9999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-48 Score=409.58 Aligned_cols=219 Identities=22% Similarity=0.364 Sum_probs=188.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||++++... .....+|+||||+|++||+++|+|||||||||||++|+|..+ |.+|+|.++|+++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 6789999876432 123468999999999999999999999999999999999987 56999999999875
Q ss_pred ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCC
Q 001048 654 QHT-------FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNG 725 (1174)
Q Consensus 654 ~~~-------~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~ 725 (1174)
... +++.+|||+|++.++|.+||+||+.++...+.....+.+++.+++.+.++.++|.+ ..+... .+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 421 13469999999999999999999999987765556677778888999999999975 456554 47
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+++|++|||||||||||+.++..|++.|+++.++ |+|+|++||++ ++.+.+|++++|. +|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~-~G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLK-DGE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH--HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 99999999986 4567889888886 599
Q ss_pred EEEEcCC
Q 001048 805 IIYFGPL 811 (1174)
Q Consensus 805 ~v~~G~~ 811 (1174)
+++.|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999975
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-48 Score=410.80 Aligned_cols=210 Identities=21% Similarity=0.318 Sum_probs=184.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||++++ ++ .+|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y-------------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKW-------------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEEC-------------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEe-------------CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 6788898753 22 58999999999999999999999999999999999987 56999999999986
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|++.+++++||+||+.|+..++.. .. .++++++++.+++.+..|+..+ +|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCChh-----hCCHHHhc
Confidence 53 3456799999999999999999999999876532 21 3468889999999999888754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+++|++|||||||+|||+.++..+++.|+++.+ .|.|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~-~G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999999999999999999999975 4999999999975 6777889998886 5999999997
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 213 ~ 213 (229)
T d3d31a2 213 E 213 (229)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.9e-46 Score=397.08 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=191.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||+..+ +++++|+||||+|++||++||+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecc
Confidence 7788998754 45789999999999999999999999999999999999987 56999999999875
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ...++.+|||||++.+++++|+.||+.|...++ ..+..+..+.++++++.+++.+..+..++ +||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHH
Confidence 4 234677999999999999999999999988765 34566677889999999999988888765 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||++|||||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999999999999999999999999999988999999999975 6667788888887 5999999998
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 218 ~e 219 (238)
T d1vpla_ 218 EE 219 (238)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.4e-46 Score=401.78 Aligned_cols=216 Identities=22% Similarity=0.276 Sum_probs=187.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||+..+ ++.++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.++|+++.
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 7889998754 34689999999999999999999999999999999999987 56999999999864
Q ss_pred cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccc
Q 001048 654 QH----------------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDS 716 (1174)
Q Consensus 654 ~~----------------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~ 716 (1174)
.. ..++.+|||+|++.+++.+||.||+.++.... ...+..+..+++.++++.+++.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 21 23456999999999999999999999874322 234667778889999999999763 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
.. .+|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++|+|||++|||++ ++...+|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 43 469999999999999999999999999999999999999999999999988999999999975 667788999
Q ss_pred eEEecCcEEEEEcCCCc
Q 001048 797 VLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~~ 813 (1174)
++|. +|++++.|++++
T Consensus 220 ~vm~-~G~iv~~g~~~e 235 (258)
T d1b0ua_ 220 IFLH-QGKIEEEGDPEQ 235 (258)
T ss_dssp EEEE-TTEEEEEECHHH
T ss_pred EEEE-CCEEEEEcCHHH
Confidence 9986 599999999853
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=5.5e-46 Score=398.34 Aligned_cols=216 Identities=20% Similarity=0.333 Sum_probs=184.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.+ +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccc
Confidence 468999999854 35689999999999999999999999999999999999987 569999999999
Q ss_pred CCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCC
Q 001048 652 KVQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 652 ~~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~L 726 (1174)
+.... . +..++|+||+..+++.+||+||+.++...+. .....++.++++++.+ ++.+..|+.++ +|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchh-----hC
Confidence 75432 1 2348999999999999999999988754332 2233445566666665 57777777654 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||||+|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~-~G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999988999999999975 6778899999987 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EEcCHHH
Confidence 9999865
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-46 Score=400.77 Aligned_cols=217 Identities=27% Similarity=0.421 Sum_probs=176.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.|+|+||+|.+ +..++.+|+||||+|++||.+||+||||||||||+++|+|..+ |.+|+|.+||+++
T Consensus 1 eI~~~nvsf~Y-----------~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRY-----------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEES-----------STTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEe-----------CCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEe
Confidence 37899999964 2345679999999999999999999999999999999999987 5699999999997
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHHc-CCCCcccccccCCCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVN--EVLQTI-ELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~l-~l~~~~~~~~~~~~~~~L 726 (1174)
.. ..+++.++||+|++.++ +.||+|||.++.. ..+.++..+..+ .+.+.+ .+....++.++..+ ..|
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g-~~L 140 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGL 140 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTT-TCC
T ss_pred cccchhhhhceEEEEecccccC-CccccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCC-Ccc
Confidence 54 34677899999998765 5799999987531 222222211111 111111 33456678887654 469
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|+|++||+++ ..+.+|++++|. +|+++
T Consensus 141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~G~Iv 216 (241)
T d2pmka1 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-KGKIV 216 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-TTEEE
T ss_pred CHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 457799999987 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 217 ~~G~~~e 223 (241)
T d2pmka1 217 EQGKHKE 223 (241)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-45 Score=399.97 Aligned_cols=219 Identities=23% Similarity=0.288 Sum_probs=189.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
-++++||+.++ +++++|+||||++++||++||+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 37889998754 35689999999999999999999999999999999999987 5699999999997
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhcc----------CCCCCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRL----------STQIDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~----------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
.... .++.++|+||++.+++++||+||+.++...+. ......++..+++.++++.+++.+..|+.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 5432 23348999999999999999999998643221 111233455677889999999999888876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
+ .|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 5 69999999999999999999999999999999999999999999999888999999999997 67888999999
Q ss_pred EecCcEEEEEcCCCc
Q 001048 799 MKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 799 l~~~G~~v~~G~~~~ 813 (1174)
|. +|++++.|++++
T Consensus 223 m~-~G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MF-NGQIIAEGRGEE 236 (254)
T ss_dssp EE-TTEEEEEEESHH
T ss_pred Ee-CCEEEEEecHHH
Confidence 97 599999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1e-45 Score=390.41 Aligned_cols=194 Identities=22% Similarity=0.373 Sum_probs=174.0
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
||||++. ||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++... ..++.+|||||++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 68999999999999999999999988 5699999999998653 345679999999999999999999998
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
+.+ ..++.+++++++++++.+||.+..|+... +|||||||||+|||||+++|++|+|||||+|||+.++.
T Consensus 94 ~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 642 34567778899999999999998888754 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 763 TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 763 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
.+++.|+++.++ |.|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEecHH
Confidence 999999999765 999999999975 6778889999987 59999999974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-45 Score=394.56 Aligned_cols=219 Identities=25% Similarity=0.340 Sum_probs=177.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.|+|+||+|.++. .+++.+|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||+++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 5999999996521 124579999999999999999999999999999999999988 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCCcccccccCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.. ..+++.++||+|++.++ ..||+||+.++... ........+ ...+.++ ++.+..++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred chhhhHHHHHHhhhcccccccc-Ccchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhccC-c
Confidence 54 34567899999999876 56999999886321 112221111 1122333 45566778887644 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.++ |+|+|++||++ +..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEE-TT
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998754 89999999986 4567899999987 59
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
++++.|++++.
T Consensus 228 ~iv~~Gt~~eL 238 (251)
T d1jj7a_ 228 AIREGGTHQQL 238 (251)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.2e-45 Score=393.51 Aligned_cols=217 Identities=26% Similarity=0.379 Sum_probs=179.4
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
....++++||+|.+ +..++++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||
T Consensus 13 ~~g~I~~~nvsf~Y-----------~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQY-----------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECS-----------CSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCEEEEEEEEEEe-----------CCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCC
Confidence 34469999999954 3344679999999999999999999999999999999999988 5699999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCccccccc
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVG 719 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~ 719 (1174)
+++.. ..+++.++||+|++.++ ..||+|||.++.. ....+ .+.++++..+ +.+..|+.++
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~-----~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRP-----TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCS-----SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEcccCCHHHhhheeeeeeccccCC-CCCHHHHHhccCc-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhc
Confidence 98754 34677899999998775 5799999987621 22222 2334444444 3455688887
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.+ ..||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|+|++||+++ ....+|++++|
T Consensus 150 ~~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEE
Confidence 654 46999999999999999999999999999999999999999999999865 899999999975 45789999999
Q ss_pred ecCcEEEEEcCCCcc
Q 001048 800 KNGGRIIYFGPLGQH 814 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~~ 814 (1174)
. +|++++.|++++.
T Consensus 226 ~-~G~iv~~G~~~eL 239 (255)
T d2hyda1 226 E-NGHIVETGTHREL 239 (255)
T ss_dssp E-TTEEEEEECHHHH
T ss_pred E-CCEEEEECCHHHH
Confidence 6 5999999998653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-45 Score=393.03 Aligned_cols=212 Identities=25% Similarity=0.401 Sum_probs=173.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++||+|.++ +++++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||+++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 78999999542 23579999999999999999999999999999999999987 56999999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~ 723 (1174)
. ..+++.+|||+|++.+++. ||+||+.++.. ....... +.+.++..+ +.+..++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchhh----HHHHHHHHHhhhhhccCcccccccccCCC-
Confidence 4 3467789999999987764 99999976532 1122222 222333222 3345677777654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|++++ +|+|+|++||++ +....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l--~~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH--HHHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE-CC
Confidence 4699999999999999999999999999999999999999999999987 489999999986 4556799999987 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
Confidence 9999999865
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.3e-44 Score=386.70 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=176.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||+|.+ +..++++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||++
T Consensus 12 g~I~~~nvsf~Y-----------~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTY-----------PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECS-----------SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEe-----------CCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 359999999954 3334679999999999999999999999999999999999988 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.. ..+++.++||+|++.++ ..|+++|+.++.. ...+.++ ++++++..+ +++..|+.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~----~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYART----EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTT----SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred cchhhhhhhhheEEEEeeccccC-CcchhhhhhhcCc----ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcCC
Confidence 754 34567799999998765 5799999987521 1223222 333333333 234467778764
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ ..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|+|++||+++ ..+.+|++++|.
T Consensus 150 ~-~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~- 224 (253)
T d3b60a1 150 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE- 224 (253)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-
T ss_pred C-CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEE-
Confidence 3 57999999999999999999999999999999999999999999999865 899999999975 457799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 225 ~G~Iv~~G~~~e 236 (253)
T d3b60a1 225 DGIIVERGTHSE 236 (253)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999854
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-40 Score=354.18 Aligned_cols=196 Identities=23% Similarity=0.387 Sum_probs=169.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++... ..+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 57999999999999999999999999999999999754 479999999986542 233457999998877778899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc-------CCcEEEE
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 749 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~-------~p~illl 749 (1174)
.+++.++.. .+.+.+.++++++.+++.+..++.++ .|||||||||+|||+|++ +|+||+|
T Consensus 90 ~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEE
Confidence 999887532 11234567889999999988777654 699999999999999997 7799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|++++
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~e 218 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREE 218 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHHH
Confidence 9999999999999999999999989999999999986 6888899999997 599999999754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-41 Score=368.81 Aligned_cols=194 Identities=21% Similarity=0.361 Sum_probs=156.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.++|+ ++|++|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccC-ceee
Confidence 4689999999999999999999999999999999999988 56999999883 799999988765 5999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHH---HHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNE---VLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
||+.++.. .......+..+. ......+.+..++.++..+ .+|||||||||+|||||+++|+||+||||||
T Consensus 115 eni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred cccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 99987531 122221111111 1222345556677777644 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+||+.++..+++.+.+..++|+|+|++||++ +..+.+|++++|. +|++++.|++++.
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~eL 244 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFSEL 244 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEE-CCEEEEECCHHHH
Confidence 9999999999876444344589999999986 5568899999987 5999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-38 Score=330.36 Aligned_cols=194 Identities=21% Similarity=0.312 Sum_probs=158.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||++.+ ++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.+||+++
T Consensus 2 ~lev~~ls~~y--------------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGY--------------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEES--------------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEe--------------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 47899999843 2479999999999999999999999999999999999988 5799999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. .++.++|++|+..++..+|++|++.+...++.. ...+ +.+.+.++.+++.+.. ..+ .+|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-KKL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-SBG-----GGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccc-ccc-----CcCCCcHHH
Confidence 53 456789999999998999999999988766532 2222 3356677888876643 333 369999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
||+|||+|+.+|+++||||||+|||+.++..+++.|+++.++ |.++|.++|+. +.||.+..+.
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~ 196 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLH 196 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhhee
Confidence 999999999999999999999999999999999999998765 44444444433 3577666653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=8.9e-26 Score=237.26 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=95.9
Q ss_pred cchhhhcCCCCCc-------cHHHHHH----HhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 4 IKLEKLAGIFPDP-------DVDAYMK----AISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 4 ~~~~~~~~~~~~~-------~v~~~~~----~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
...||..|++||. +|.+.+. .....+.|.+++++++|+.+||++.+|..+++ |||||||||+||
T Consensus 68 ~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~-----LSGGqkQRvaiA 142 (232)
T d2awna2 68 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIG 142 (232)
T ss_dssp CGGGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------CHH
T ss_pred chhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhh-----CCHHHHHHHHHH
Confidence 3456678888774 3333222 12244667778899999999999999999876 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+|+.+|+||+|||||||||+.++.++++.|+++.+..|+|+|++.| -..++.+++|||++|.+|+++++|++++...
T Consensus 143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999998888999998765 4467888999999999999999999877654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.92 E-value=1.1e-25 Score=237.85 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=118.6
Q ss_pred chhhhcCCCCC-------ccHHHHHH----HhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMK----AISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~----~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.+||..|+++| .+|.+.+. ....++.|.+++++++|+.+||++.+|..+++ |||||||||+|||
T Consensus 78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~-----LSGGqkQRv~IAr 152 (240)
T d1g2912 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152 (240)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHH
T ss_pred cccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHH
Confidence 34666777666 35554443 22244667778899999999999999998866 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||+.+|+||+|||||+|||+.++..+++.|+++.++.|.|+|++.| --.++.+++|||++|.+|++++.|++++..
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999998777999998765 445788899999999999999999987654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.1e-25 Score=237.88 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=118.8
Q ss_pred ccchhhhcCCCCC-------ccHHHHHHH----hhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHH
Q 001048 3 VIKLEKLAGIFPD-------PDVDAYMKA----ISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 3 ~~~~~~~~~~~~~-------~~v~~~~~~----~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.+.|+..|+++| .+|.+.+.. ....+.|..++++++|+.+||++.+|..+++ |||||||||+|
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~-----LSGG~~QRvai 151 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAI 151 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSC-----CCHHHHHHHHH
T ss_pred hhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 3445667888766 355554432 2244666678899999999999999998866 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||+.+|+||+|||||+|||+.++.+|++.|+++.++.|.|+|+..| -..++.+++|||++|.+|++++.|++++.
T Consensus 152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998877999998755 55577788999999999999999998754
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=4.9e-26 Score=240.09 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=119.5
Q ss_pred cchhhhcCC-------CCCccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 4 IKLEKLAGI-------FPDPDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 4 ~~~~~~~~~-------~~~~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
..+||..|+ .|+.+|.+.+... ..++.+.+++++++|+.+||++.+|..+++ |||||||||+||
T Consensus 78 ~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~-----LSGGqkQRvaiA 152 (242)
T d1oxxk2 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVALA 152 (242)
T ss_dssp CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHH
T ss_pred chhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhh-----CCHHHHhHHHHH
Confidence 344555555 4556777666421 234566778899999999999999999876 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|||+.+|+||+|||||||||+.++.++++.|+++.++.|.|+|+..|. ..++.+++|||++|.+|++++.|++++...
T Consensus 153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999987779999987664 457889999999999999999999876643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.5e-25 Score=235.71 Aligned_cols=140 Identities=23% Similarity=0.251 Sum_probs=118.9
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh--hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI--SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~--~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
..||..|++|| .+|.+.+... ..++.+++++++++++.+||.+.+|..+.+ |||||||||+|||||
T Consensus 67 ~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~kQRvaiAral 141 (240)
T d2onka1 67 PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARAL 141 (240)
T ss_dssp TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHH
T ss_pred HHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 34566777776 3566665432 134566678899999999999999998865 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+.+|+||+|||||||||+.++..+++.++++.+..|.|+|++.|. ..++.+++|||++|++|+++++|++++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 999999999999999999999999999999987778888887664 45788999999999999999999987664
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.92 E-value=2e-25 Score=233.72 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=119.2
Q ss_pred cchhhhcCCCC-------CccHHHHHHH-hhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 4 IKLEKLAGIFP-------DPDVDAYMKA-ISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 4 ~~~~~~~~~~~-------~~~v~~~~~~-~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
...||..|+++ +.+|.+.+.. ....+.+..++++++++.+||++.+|..+++ |||||||||+|||||
T Consensus 68 ~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSGG~~QRvaiAraL 142 (229)
T d3d31a2 68 SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARAL 142 (229)
T ss_dssp CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHT
T ss_pred chhHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhh-----CCHHHhcchhhhhhh
Confidence 34456666544 4677776653 3334555567899999999999999998876 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+.+|+||+|||||||||+.++.++++.|+++.+..|.|+|+..| -..++.+++|||++|.+|+++++|++++..
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998878999998765 445788899999999999999999987654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=9.2e-26 Score=237.90 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=118.2
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
..||..|++|| .+|.+.+... ..++.|.+++++++|+.+||++.+|..+.+ |||||||||+|||
T Consensus 75 ~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGq~QRvaiAr 149 (239)
T d1v43a3 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVAR 149 (239)
T ss_dssp GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHH
T ss_pred cccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHh
Confidence 44566777666 4455544321 134667778899999999999999998855 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+|+.+|+||+|||||||||+.++.++++.|+++.+..|.|+|++.| -..++.+++|||++|.+|++++.|++++..
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999998777999998766 455788999999999999999999987653
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=4.9e-24 Score=223.90 Aligned_cols=133 Identities=19% Similarity=0.238 Sum_probs=110.4
Q ss_pred hhhcCCCCC-------ccHHHHHHHh-------hhccchhhhHHHHHHHHhCCcc-cccccccCCCcccCCccccchhHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAI-------SAEGLENSLQTDYILKILGLDI-CADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~-------~~~~~e~~~~v~~vl~~lgL~~-~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
|+..|+++| .+|.+.+... ..+..+..+++.++|+.+||.+ .+|..+.+ |||||||||+|
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~-----LSGGqkQRvaI 156 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAI 156 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhh-----CCHHHHHHHHH
Confidence 345666555 5666654421 1234566667889999999976 57888755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
||||+.+|+||+|||||||||+.++.+|++.|+++.+..|+|+|+..|.+ +..+++|||++|.+|++++.|++
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEETTEEEEEEEC
T ss_pred HhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH--HHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999887899999988865 45589999999999999999964
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3e-23 Score=220.46 Aligned_cols=142 Identities=22% Similarity=0.262 Sum_probs=119.8
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|++|| .++.+.++.. ...+.+.+++++.+++.++|.+..|..+++ ||||||||++||+
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIAR 146 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHH
T ss_pred HHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhh-----CCHHHHHHHHHHH
Confidence 34566666666 4565555432 234566677899999999999999999976 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFF 153 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf 153 (1174)
+|+++|+||+|||||+|||+.++.++++.++++++ .|+|||++.| -..++.+++|||++|.+|+++++|++++..+-+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999999986 5899999866 455888899999999999999999998887644
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.6e-23 Score=221.10 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=110.7
Q ss_pred ccchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCC-------cccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGL-------DICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL-------~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
..+.|+..|++||. ++.+.+...... ...++++..++..++ .+..||.+|+. .+.|||||||||
T Consensus 72 ~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g~~LSGGq~QRv 148 (241)
T d2pmka1 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ-GAGLSGGQRQRI 148 (241)
T ss_dssp HHHHHHHEEEECSSCCCTTSBHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-TTCCCHHHHHHH
T ss_pred hhhhhceEEEEecccccCCccccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCC-CCccCHHHHHHH
Confidence 35678889999984 444555322111 122234555555444 45678889873 456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..|++.|+++.+ ++|+|+..|++ ++.+.||+|++|.+|+++++|+++++
T Consensus 149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCH--HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999864 78999876655 56799999999999999999999766
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
..
T Consensus 225 l~ 226 (241)
T d2pmka1 225 LS 226 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.8e-23 Score=222.78 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=110.4
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHH-------HHhCCcccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYIL-------KILGLDICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl-------~~lgL~~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||. ++.+.+..-.... .....+.+.. ..-+|.+..||.+|+ ....|||||||||+
T Consensus 84 ~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRva 161 (251)
T d1jj7a_ 84 RYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVA 161 (251)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHH
T ss_pred HHHHHHhhhccccccccCcchhhhhhhhhccc-chHHHHHHHHHHHHHHHHHHhccccchhhHhc-cCccCChhHceEEE
Confidence 4567888888883 4555554211111 1111111111 123666778999986 34569999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+||||||+||+.++..|++.|+++.+..++|+|+..|. .++++.||||++|.+|+++++|+++++.
T Consensus 162 iARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~--l~~~~~aDrI~vl~~G~iv~~Gt~~eLl 239 (251)
T d1jj7a_ 162 LARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLM 239 (251)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred EeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCC--HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999887678999987665 4678999999999999999999998765
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 240 ~ 240 (251)
T d1jj7a_ 240 E 240 (251)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.87 E-value=3.7e-23 Score=220.34 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=111.6
Q ss_pred CCCCCccHHHHHHHhh---hccchhhhHHHHHHHHh-CCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAIS---AEGLENSLQTDYILKIL-GLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~~---~~~~e~~~~v~~vl~~l-gL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
+++|+.+|.+.+.... ..+++..+.++++++.+ +|++.+|..+++ |||||||||+||+||+.+|++|+|||
T Consensus 91 ~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~iAraL~~~P~lLllDE 165 (240)
T d1ji0a_ 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhh-----CCHHHHHHHHHHHHHHhCCCEeeecC
Confidence 4556677877665322 22444455677888887 799999999987 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||+|||+.++.++++.|+++++ .|+|+|++.| .-.++.+++|||++|.+|++++.|++++..
T Consensus 166 Pt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 166 PSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ-NALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999986 4888888654 557888999999999999999999986543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.87 E-value=2.5e-23 Score=221.87 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=109.5
Q ss_pred ccchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhC-------CcccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILG-------LDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lg-------L~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
..+.|+..|++||.. +.+.+... .......+.+.+.++..+ +.+..||.+|+. ...|||||||||
T Consensus 71 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGqkQRv 148 (242)
T d1mv5a_ 71 LENWRSQIGFVSQDSAIMAGTIRENLTYG-LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQRQRL 148 (242)
T ss_dssp CSCCTTTCCEECCSSCCCCEEHHHHTTSC-TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHHHHHH
T ss_pred HHHHHhheEEEccccccCCcchhhheecc-cccccchhhHHHHHHHHHhhhhhccCcccccccccCC-CCCCCHHHHHHH
Confidence 345678889988844 33443211 111122233445555444 345678899873 445999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+.+|+||+||||||+||+.++..|++.|+++++ ++|+|+..|. .+..+.||||++|++|+++++|+++++
T Consensus 149 ~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~i~vl~~G~iv~~G~~~eL 224 (242)
T d1mv5a_ 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNEL 224 (242)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCS--HHHHHHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECC--HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999863 7899987664 467788999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 225 l~ 226 (242)
T d1mv5a_ 225 VA 226 (242)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.87 E-value=6.1e-23 Score=219.84 Aligned_cols=142 Identities=23% Similarity=0.259 Sum_probs=112.1
Q ss_pred ccchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
..+.|+..|++||.. |.+.+.... .....+++.+.++..+|. +..||.+|+ ....|||||||||
T Consensus 87 ~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~--~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi 163 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILFSDTVKENILLGR--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRL 163 (255)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHGGGC--SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHH
T ss_pred HHHhhheeeeeeccccCCCCCHHHHHhccC--cCCCHHHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHH
Confidence 345678889888844 445553211 112233566677776654 467899987 3455999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|+|+..|.+ ++++.||+|++|.+|++++.|+++++
T Consensus 164 ~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~~G~iv~~G~~~eL 239 (255)
T d2hyda1 164 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIENGHIVETGTHREL 239 (255)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999864 78888766654 57789999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 240 l~ 241 (255)
T d2hyda1 240 IA 241 (255)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=8.3e-23 Score=219.33 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=109.7
Q ss_pred cchhhhcCCCCCccH------HHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDPDV------DAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~v------~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
...|+..|++||... ...+.....+ ....+++++.++..++. +..||.+|+ ....|||||||||+
T Consensus 85 ~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~-~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRva 162 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIA 162 (253)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHH
T ss_pred hhhhheEEEEeeccccCCcchhhhhhhcCcc-cCCHHHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHH
Confidence 456777888888443 2333222111 12233456666666654 346899987 34569999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|+|+..|. .++.+.||+|++|.+|+++++|+++++.
T Consensus 163 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~v~vl~~G~Iv~~G~~~eLl 238 (253)
T d3b60a1 163 IARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSELL 238 (253)
T ss_dssp HHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSC--GGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECC--HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999863 7888876664 4577899999999999999999998765
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 239 ~ 239 (253)
T d3b60a1 239 A 239 (253)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=9.1e-23 Score=219.14 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=112.7
Q ss_pred chhhhcCCCCC-------ccHHHHHHH-----hhhccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKA-----ISAEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~-----~~~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
.+|+..|+++| .+|.+.+.. ....+.+..++++++++.+||.+- .|...++ |||||||||+|
T Consensus 86 ~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~-----LSGG~~QRv~i 160 (258)
T d1b0ua_ 86 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSI 160 (258)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHH
T ss_pred HHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccc-----ccHHHHHHHHH
Confidence 35566665544 566554332 223456667789999999999874 5666655 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||+|+.+|+||+|||||+|||+.+..+|++.|+++++ .|+|+|+.. |-..++.+++|||+||.+|++++.|++++..
T Consensus 161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vt-Hdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEEC-SCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999986 588888754 4556788899999999999999999987654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=4.7e-22 Score=213.99 Aligned_cols=113 Identities=24% Similarity=0.293 Sum_probs=102.1
Q ss_pred chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHh
Q 001048 30 LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~ 109 (1174)
.+..++++++++.+++.+.+|..+++ |||||||||+|||+|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus 125 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~- 198 (254)
T d1g6ha_ 125 EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA- 198 (254)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCcchhccCchhh-----CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 34446788999999999999999987 999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 110 ~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.|.|||++- |--.++.+++|||+||.+|++++.|++++.
T Consensus 199 ~g~til~vs-Hdl~~~~~~~Drv~vm~~G~iv~~g~~~e~ 237 (254)
T d1g6ha_ 199 KGITFLIIE-HRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237 (254)
T ss_dssp TTCEEEEEC-SCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred CCCEEEEEe-CcHHHHHHhCCEEEEEeCCEEEEEecHHHH
Confidence 589999864 566688899999999999999999987654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.5e-21 Score=203.50 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=101.7
Q ss_pred cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhc-------CCcEeeeeCCCCCcChHHHHHHHH
Q 001048 29 GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVG-------PTRALFMDEISNGLDSSTTFQIVS 101 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~-------~P~IL~LDEPTSGLDS~sa~~v~~ 101 (1174)
+..+.++++++++.++|.+..|..+++ |||||||||+||++|+. +|+||+|||||+|||+.++..+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-----LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~ 173 (231)
T d1l7vc_ 99 DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173 (231)
T ss_dssp CTTCHHHHHHHHHHTTCTTTTTSBGGG-----CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCHhHhCcChhh-----cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 444566789999999999999998865 99999999999999996 779999999999999999999999
Q ss_pred HHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 102 FLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 102 ~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.|+++++ .|.|||++.|. ..++.+.+|||++|.+|+++++|++++.
T Consensus 174 ~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~~~ev 219 (231)
T d1l7vc_ 174 ILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEV 219 (231)
T ss_dssp HHHHHHH-TTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred HHHHHHh-CCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEECCHHHH
Confidence 9999976 58999998765 4578999999999999999999987644
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.8e-20 Score=204.25 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=87.2
Q ss_pred hCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 43 LGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 43 lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
..|.+..||.+|+ ....|||||||||+|||||+++|+||+|||||||||+.++..+++.+.... ..++|+|+..|+
T Consensus 142 ~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~-- 217 (281)
T d1r0wa_ 142 TKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSK-- 217 (281)
T ss_dssp TTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSC--
T ss_pred Hhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEech--
Confidence 3556677888886 234599999999999999999999999999999999999999987643322 247888886665
Q ss_pred hhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 123 PETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 123 ~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
.+..+.||||++|.+|+++++|+++++..
T Consensus 218 ~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 218 MEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 47789999999999999999999987653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.65 E-value=6.7e-17 Score=167.23 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=89.3
Q ss_pred chhhhcCCCCC-------ccHHHHHHHhhhc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAISAE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~~~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
+.|...+.+|| .++.+.++....- ....++++.+.++.+++.+. +..+++ |||||||||+||++|
T Consensus 67 ~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-----LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 67 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTL 140 (200)
T ss_dssp GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHT
T ss_pred HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc-ccccCc-----CCCcHHHHHHHHHHH
Confidence 34444455444 4555555543211 12223457778889888764 455665 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
+.+|+|++|||||+|||+.++..+++.|+++.+..+ ++|++.||. .+++|.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSC----CTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC-EEEEEEech----hhhcchhhheee
Confidence 999999999999999999999999999999987655 455554543 357999999865
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=4.6e-14 Score=143.60 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=95.7
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEcc--CC--CCCCCCCHHHHHHHHHhhccCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQ--ND--IHSPNITVEESIVFSAWLRLST 690 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q--~~--~~~~~lTv~e~l~~~~~~~~~~ 690 (1174)
++|+||||||||||+++|+|..+ +..|.+...+.+......+ .++..+ .+ ......+..+. .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~-- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTSK------KLV-- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCCS------SEE--
T ss_pred EEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHHh--hhhhhhhhhHHHHHHhhhhhhhh------hhh--
Confidence 79999999999999999999876 4578888877654322111 121111 00 00000000000 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001048 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770 (1174)
Q Consensus 691 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 770 (1174)
. ..+. +. ....+|+|+++|.++++++..+|++|++|||+... .....+.+.+.+
T Consensus 71 --~-------------~~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~ 124 (178)
T d1ye8a1 71 --G-------------SYGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQ 124 (178)
T ss_dssp --T-------------TEEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHH
T ss_pred --h-------------hhhc----Cc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHH
Confidence 0 0000 00 01138999999999999999999999999985443 334556666666
Q ss_pred HHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 771 VVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 771 l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.+ .+.++|+++|+.+ ....+|++..+. +|+++.-++
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~ 162 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTP 162 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCT
T ss_pred HhccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECC
Confidence 554 4899999999864 355677776664 689887654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=3.5e-08 Score=108.60 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHH----hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 724 NGLSTEQRKRLTIAVE----LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~a----l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..+|+|||+...++.. ...+|+++++|||-++|||.....+.+.|++..+ +.-+|+|||.| .+.+.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEEE
Confidence 4699999999877665 4557789999999999999999999999999865 68999999987 457888887664
Q ss_pred e
Q 001048 800 K 800 (1174)
Q Consensus 800 ~ 800 (1174)
.
T Consensus 295 ~ 295 (308)
T d1e69a_ 295 T 295 (308)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=9.9e-08 Score=109.78 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHh----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 724 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| .+.+.+|.++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 45899999998877543 567789999999999999999999999999865567899999986 678889988766
Q ss_pred e
Q 001048 800 K 800 (1174)
Q Consensus 800 ~ 800 (1174)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=1.4e-06 Score=99.80 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=59.7
Q ss_pred ccCCccccchhHHHHH----HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGEL----IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~a----Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
+-+|||||.++++|.- .+.++++++||||+++||+.....+.+.|++++. .+.-+|++.|+| .+.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 4489999999888733 2467789999999999999999999999998864 344577766654 68999999875
Q ss_pred e
Q 001048 135 M 135 (1174)
Q Consensus 135 L 135 (1174)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.55 E-value=0.00036 Score=71.43 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=38.2
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHH
Q 001048 741 VANPSIIFMDEPTSGLDARAAATVMR-AVKNVVETGRTVVCTIHQPSIDIFEA 792 (1174)
Q Consensus 741 ~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~ 792 (1174)
+.+..++++||+.+|=|+.....+.. .++.+.+.+..++++||.. ++.+.
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 45567999999999999988877665 4455666788999999964 45443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.49 E-value=3e-05 Score=76.80 Aligned_cols=81 Identities=9% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcE
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKI 140 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~v 140 (1174)
+|||+++|.++++++..+|++|++|||+... ......++.|.++-+..+.++|++.|+. +.....|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 6999999999999999999999999995443 3345666777766555577888887754 45678999999999999
Q ss_pred EEeCC
Q 001048 141 VYHGP 145 (1174)
Q Consensus 141 vy~G~ 145 (1174)
++-++
T Consensus 158 ~~v~~ 162 (178)
T d1ye8a1 158 IELTP 162 (178)
T ss_dssp EECCT
T ss_pred EEECC
Confidence 87654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00031 Score=72.51 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.0
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEecCCC
Q 001048 741 VANPSIIFMDEPTSGLDARAAATVMRA-VKNVVET-GRTVVCTIHQPS 786 (1174)
Q Consensus 741 ~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~ 786 (1174)
+++..++++||+.+|=|+.....+... ++.+..+ +..++++||...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 445679999999999999999887654 6667654 568899999753
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.0005 Score=74.25 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.7
Q ss_pred ccCCccccchhHHHHH----HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGEL----IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~a----Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
..+|+|||+.+.++.. ...+|+++++|||-++||+.....+.+.|+..++ +.=+|+|.| |+++++.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTH--sp~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITH--NKIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECC--CTTGGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEEC--CHHHHHhcccEEE
Confidence 4589999999887644 4567899999999999999999999999999874 456777765 6688899999966
Q ss_pred --ecCC
Q 001048 135 --MAEG 138 (1174)
Q Consensus 135 --L~~G 138 (1174)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 5566
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.71 E-value=0.00069 Score=71.94 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=28.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+-|+++.+=+.+||++.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 44555554589999999999999999999877763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.00054 Score=69.53 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 646 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~ 646 (1174)
+|+.++++|+||+|||||+|.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 588999999999999999999988543 2245554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.36 E-value=0.00071 Score=66.99 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999976543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.22 E-value=0.0011 Score=64.78 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.|+++.|.||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.00097 Score=64.64 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|+|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.00013 Score=73.63 Aligned_cols=33 Identities=30% Similarity=0.238 Sum_probs=27.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-+++.++++.+| +++|+|||||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 346677788776 999999999999999999963
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.028 Score=58.72 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=33.3
Q ss_pred hhcCCcEEEEeCCCC---C--CCHHHHHHHHHHHHHHHHc-CCEEEEEecC
Q 001048 740 LVANPSIIFMDEPTS---G--LDARAAATVMRAVKNVVET-GRTVVCTIHQ 784 (1174)
Q Consensus 740 l~~~p~illlDEPts---g--LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~ 784 (1174)
-..+|+++++|--+. + -|......+++.|++++++ |.++|++.|-
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 457999999996542 1 2666667788888888754 8898888884
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0014 Score=63.60 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.1
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.+.++.|+||+||||||+.+.|+...
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.97 E-value=0.00062 Score=69.26 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 646 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~ 646 (1174)
+|+.++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 478889999999999999999998543 2245554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.84 E-value=0.0018 Score=63.16 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.1
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|-++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.002 Score=64.86 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.++.|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999987543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.52 E-value=0.003 Score=61.30 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++|-.++|.||+||||||+.+.|+-...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999986543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.50 E-value=0.0029 Score=61.21 Aligned_cols=23 Identities=30% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|+|++|||||||++.|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999888764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.47 E-value=0.0032 Score=59.67 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.42 E-value=0.0027 Score=62.13 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..++|.||+|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.02 Score=59.30 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..-+.+.||+|+|||++.+.|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457899999999999999999643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.22 E-value=0.0043 Score=60.14 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..++.|.|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999997654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.14 E-value=0.0046 Score=59.68 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.++.|.||+||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.10 E-value=0.004 Score=61.94 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999854
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.06 E-value=0.0044 Score=59.86 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.05 E-value=0.013 Score=60.53 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 36899999999999999999743
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0041 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.95 E-value=0.15 Score=51.23 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=25.7
Q ss_pred ccccc-eeEEeCCeEEEEecCCCCCHHHHHHHH
Q 001048 601 LLSDI-TGTFRPGILTALMGVSGAGKTTLMDVL 632 (1174)
Q Consensus 601 iL~~v-s~~i~~Ge~~~l~G~sGsGKSTLl~~l 632 (1174)
-|+++ ++=+++|+++.|.|++|+|||||.--+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 34443 346999999999999999999997544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.86 E-value=0.0059 Score=59.67 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.85 E-value=0.0043 Score=61.06 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.85 E-value=0.0054 Score=60.67 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++||-||+|||||||.+.|+-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.0056 Score=58.32 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.0058 Score=60.31 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997644
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0069 Score=59.30 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999887543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0041 Score=61.56 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+|-++.|+|++||||||+-+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.71 E-value=0.007 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.64 E-value=0.0063 Score=62.55 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.57 E-value=0.0063 Score=59.61 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.54 E-value=0.0078 Score=59.63 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.0086 Score=58.25 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.40 E-value=0.008 Score=59.50 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+||||||||||.+.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.0084 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.24 E-value=0.007 Score=59.18 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+||+|++|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.20 E-value=0.01 Score=57.82 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|+|++|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.20 E-value=0.0096 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.|+|++||||||+.+.|+-..
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.0097 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+||+|++|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.011 Score=58.74 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.012 Score=58.86 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999987765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.10 E-value=0.0085 Score=59.42 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.0
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.+.++.|+||+||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999998643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.08 E-value=0.0084 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|||||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.013 Score=55.94 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.97 E-value=0.013 Score=57.83 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.0
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|--+.|+||+||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566788999999999999999984
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.93 E-value=0.01 Score=56.20 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999873
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.012 Score=59.18 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++||-|++||||||+.+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.011 Score=56.19 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.8
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999843
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.81 E-value=0.011 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|+|++||||||+-+.|+-..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.70 E-value=0.012 Score=57.92 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.0092 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.69 E-value=0.012 Score=56.17 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.67 E-value=0.016 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHh
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999885
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.016 Score=57.32 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.56 E-value=0.015 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.|+|++||||||+-+.|+-..
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999998654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.53 E-value=0.015 Score=56.72 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.35 E-value=0.017 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998843
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.33 E-value=0.017 Score=56.35 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.06 E-value=0.019 Score=56.01 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+||+|+.+||||||+|.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.02 E-value=0.021 Score=55.71 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.97 E-value=0.019 Score=59.77 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
...+.|.||+|||||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.83 E-value=0.023 Score=57.35 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.82 E-value=0.022 Score=59.21 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999954
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.80 E-value=0.023 Score=56.54 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.67 E-value=0.024 Score=55.23 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.|+||+||||||+-+.|+-.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.65 E-value=0.028 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=23.0
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|-++-+.|.||||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.0077 Score=57.45 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.60 E-value=0.021 Score=61.31 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.8
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..-++.|.-+.|.||.||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 34456677799999999999999999998665
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.022 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.025 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.44 E-value=0.025 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.42 E-value=0.026 Score=55.44 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q 001048 614 LTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.028 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.||+||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999998754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.35 E-value=0.028 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998643
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.03 Score=54.54 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.034 Score=56.62 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999977653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.08 E-value=0.032 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.05 E-value=0.028 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.99 E-value=0.037 Score=55.06 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998766664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.037 Score=55.39 Aligned_cols=26 Identities=42% Similarity=0.481 Sum_probs=23.1
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|-+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.035 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
..-.+||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.38 E-value=0.039 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997743
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.047 Score=54.50 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+|.+++|-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.16 E-value=0.04 Score=61.02 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999953
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.10 E-value=0.041 Score=52.79 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.4
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.08 E-value=0.055 Score=55.32 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.5
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999986553
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.07 E-value=0.042 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.9
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.04 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++.+++|-|+-||||||+++.|+....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.97 E-value=0.047 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.|.||+|+||||+.++|+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.96 E-value=0.052 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.+.|.||+|+||||+.++|+....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.91 E-value=0.044 Score=58.39 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.-+.++||+|+|||+|.|+|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3455689999999999999999743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.047 Score=57.71 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++||-|++||||||+.+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 7899999999999999998754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.041 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.85 E-value=0.033 Score=58.13 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=16.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999998653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.81 E-value=0.047 Score=55.33 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5899999999999999999873
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.1 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.77 E-value=0.053 Score=53.95 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q 001048 614 LTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.76 E-value=0.061 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++++||+|+||||.+-=|+-.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999998777753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.73 E-value=0.055 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+-.+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999998766664
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.66 E-value=0.063 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|+++.|.||+|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999977754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.63 E-value=0.064 Score=54.55 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.7
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|+++.|.|++|+||||+.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999876653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.60 E-value=0.055 Score=57.84 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
..-.++|.||+|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 356799999999999999999875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.57 E-value=0.052 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 36799999999999999998644
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.05 Score=51.85 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=17.9
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.051 Score=52.45 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.3
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.069 Score=54.58 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999877753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.26 E-value=0.06 Score=55.69 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.25 E-value=0.089 Score=50.55 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=25.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.+|.....+ .|.-+.|.|+||+|||||.-.|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345555555 788999999999999999877754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.12 E-value=0.055 Score=55.12 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999743
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.06 E-value=0.067 Score=51.21 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.3
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.054 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=0.068 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+|.+++|=|+-||||||+.+.|+-...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.07 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998853
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.85 E-value=0.052 Score=52.69 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.7
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999865
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.07 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++++||+|+||||.+-=|+-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999988666643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.82 E-value=0.058 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.064 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.5
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.15 Score=48.97 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999997766
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.076 Score=51.06 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.9
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=0.07 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.|-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.53 E-value=0.064 Score=51.45 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++-+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999997765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.063 Score=51.49 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.50 E-value=0.094 Score=49.35 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=24.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
..+||.+++|-|+=||||||+.|.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999885
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.079 Score=52.75 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q 001048 614 LTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++||.|+.||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.40 E-value=0.079 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=15.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-.+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999998766664
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.072 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|.+|+|||||++-+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.19 E-value=0.074 Score=51.64 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.091 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998743
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.97 E-value=0.092 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.-+.|.||+|+|||++.+.|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 45789999999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.078 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999988775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.87 E-value=0.082 Score=50.19 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.077 Score=50.37 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.73 E-value=0.073 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999997643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.65 E-value=0.084 Score=50.89 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.63 E-value=0.087 Score=54.62 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++..-+.|.||+|+|||+|.++|++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3344558899999999999999999854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.53 E-value=0.17 Score=48.56 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=23.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
||..-.. -.|.-+.|.|+||+|||||.-.|..
T Consensus 5 lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4433333 3578899999999999999877654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.48 E-value=0.09 Score=50.10 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.48 E-value=3 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.08 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.33 E-value=0.084 Score=51.81 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=18.3
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.17 E-value=0.11 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+.|.||+|+||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.089 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|.+|+|||||++.+.+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999888763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=0.11 Score=54.09 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++||-|+.|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.06 E-value=0.073 Score=51.14 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=8.5
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.099 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 58999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.00 E-value=0.092 Score=50.38 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.87 E-value=0.11 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.+-||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678999999999999999853
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.64 E-value=0.12 Score=50.93 Aligned_cols=23 Identities=57% Similarity=0.778 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|-|.-||||||+++.|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.11 Score=49.96 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.1
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999988765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.44 E-value=0.11 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999887763
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.11 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.29 E-value=0.12 Score=49.42 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.9
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997665
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.12 Score=49.30 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.98 E-value=0.22 Score=47.39 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=24.3
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++. ++-.-.|.=+.|.|+||+|||||.-.|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 33345688999999999999998866643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.91 E-value=0.14 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999853
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.87 E-value=0.13 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.|.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7889999999999999999754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.86 E-value=0.13 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999998776
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=0.13 Score=53.44 Aligned_cols=34 Identities=38% Similarity=0.696 Sum_probs=27.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+|+.++-.| -+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 4566655433 489999999999999999999854
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.13 Score=49.10 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=17.9
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.73 E-value=0.15 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=25.7
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999998885
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.52 E-value=0.14 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.45 E-value=0.14 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.+.||+|+||||+.++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999863
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.15 E-value=0.14 Score=52.22 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+.+++++||.-. |.......+.+.+.+.. ....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999964 77777776666665432 2455788988875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.09 E-value=0.13 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.|.||+|+||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.02 E-value=0.15 Score=54.30 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+||+|.+.+|||||+|+|+|.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.78 E-value=0.17 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=17.4
Q ss_pred EEEecCCCCCHHHHHHHHh
Q 001048 615 TALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~ 633 (1174)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=0.17 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999988765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.51 E-value=0.19 Score=55.33 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=38.0
Q ss_pred HHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 735 TIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 735 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
++..+|=++|++++..|.. |..++...+ +.+..|+.|+.+.|-.+ .....+++
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 3556777899999999987 566665544 34567999999999754 34555543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.40 E-value=0.22 Score=51.19 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.0
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6889999999999999999999866654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.18 Score=47.88 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.2
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.89 E-value=0.19 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-+.|+|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998753
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.63 E-value=0.23 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
|...+.++||+|+|||.|.+.|+-.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4446789999999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.62 E-value=0.17 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=0.19 Score=49.01 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.0
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++|+|++|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.03 E-value=0.21 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.4
Q ss_pred EEEecCCCCCHHHHHHHHhC
Q 001048 615 TALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g 634 (1174)
++++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.94 E-value=0.22 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.66 E-value=0.22 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999953
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.14 E-value=0.22 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+.++||+|+|||-|.+.|++..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999854
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.54 E-value=0.28 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-+||+|..++|||||++.|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.46 E-value=0.26 Score=50.71 Aligned_cols=20 Identities=50% Similarity=0.717 Sum_probs=18.2
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q 001048 614 LTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~ 633 (1174)
-+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999984
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=81.63 E-value=0.28 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.098 Sum_probs=24.7
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+++..+.+.||+|+||||+.+.|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677999999999999999999998654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.41 E-value=0.36 Score=48.65 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.08 E-value=0.3 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+||+|-+.+|||||+++|++.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999973
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.64 E-value=0.33 Score=50.04 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q 001048 614 LTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~ 633 (1174)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999884
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.20 E-value=0.4 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+||+|.-.+|||||++.|.|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 58999999999999999999854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=80.10 E-value=0.21 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.-+.|.||.|+|||||++.+++..+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 3578999999999999999998765
|