Citrus Sinensis ID: 001062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------117
MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF
ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccc
cccHHHHHHHHHHccccHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHccHcHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHcccccccccEHHHHHHHEEEEccHHHHHHHHHHHHcccccHHHEEEEHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccc
MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPlvkkvseprvVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTsslaqsihtsltpqltkgitlkdmntEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLrskgakpemIRTNIQMVGALSRavgyrfgphlgdtvPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEylsydpnftdnmeedsddeayeeeeedesaneytddedaSWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQtgnvtkgqidnnelnprwLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLadhigslipgiekslndksstsnlkiEALTFTRLvlsshsppvfhpyikalsspvlaaVGERYYKVTAEALRVCGELVRvlrpsveglgfdfkpyvqPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFgdnlgaelpacLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLmadkrsspnvglavrNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLlssakpspqsggvaKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILkddsstnsaKQHLALLCLGeigrrkdlssheHIENVIiesfqspfEEIKSAASYALGniavgnlskflPFILDQIDNQQKKQYLLLHSLKEVIVRqsvdkaefqdsSVEKILNLLFNHCESEEEGVRNVVAECLGkialiepaklvpalkvrttssaafTRATVVIAIKYSiverpekideiiFPEISSFLMLIKDQDRHVRRAAVLALSTfahnkpnlikgllpellpllydqTIVKKELIRtvdlgpfkhtvDDGLELRKAAFECVDTLLDScldqvnpssfivpylksgledhydvkmpcHLILSKLADKCPSAVLADFLHLMYTIITFsvgliggpspkdyqf
MANLQMAAILekitgkdkdfRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAplvkkvseprvveMTDKLCIKllngkdqhRDIASIALKTIIAEVTTsslaqsihtsltpqltkgitlKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAsslsddllaKATIEVVRnlrskgakpemirTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEeeeedesaneytddedasWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRqtgnvtkgqidnnelnprwllkqEVSKIVKSInrqlreksiktkvgafSVLRELVVVLPDCLADHIGSLIpgiekslndksSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRpsveglgfdfKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIAliepaklvpalkvrttssaaftratVVIAIkysiverpekidEIIFPEISSFLMLIKDQDRHVRRAAVLALstfahnkpnlIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFsvgliggpspkdyqf
MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIaslasslsddllakaTIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMeedsddeayeeeeedesaneyTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANtsfdtlldsllssAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKvrttssaaftratvvIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGllpellpllYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF
*******AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL**********SVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPN*********************************WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEK*********NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSL**************KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILK*********QHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIG*********
**NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN***QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLT*************CECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLR******EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN*****SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKD*SSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSV*************
MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA**********SCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM**************************ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSS*************AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF
*ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTD***********************TDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV********ELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIGGPSPK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1167 2.2.26 [Sep-21-2011]
Q8L5Y61219 Cullin-associated NEDD8-d yes no 0.976 0.934 0.832 0.0
Q5R6L51230 Cullin-associated NEDD8-d yes no 0.953 0.904 0.441 0.0
Q86VP61230 Cullin-associated NEDD8-d yes no 0.951 0.902 0.443 0.0
A7MBJ51230 Cullin-associated NEDD8-d yes no 0.951 0.902 0.443 0.0
Q6ZQ381230 Cullin-associated NEDD8-d yes no 0.951 0.902 0.442 0.0
P975361230 Cullin-associated NEDD8-d yes no 0.951 0.902 0.442 0.0
Q6ZQ731235 Cullin-associated NEDD8-d no no 0.953 0.901 0.402 0.0
Q86KD11238 Cullin-associated NEDD8-d yes no 0.959 0.904 0.398 0.0
O751551236 Cullin-associated NEDD8-d no no 0.958 0.904 0.411 0.0
Q9R0L41273 Cullin-associated NEDD8-d no no 0.953 0.874 0.398 0.0
>sp|Q8L5Y6|CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1922 bits (4978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 951/1142 (83%), Positives = 1056/1142 (92%), Gaps = 3/1142 (0%)

Query: 1    MANLQMAAILEK--ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV 58
            MANLQ++ ILEK  +TGKDKD+RYMATSDLLNELNK+SFK D DLEV+LS+I++QQLDDV
Sbjct: 1    MANLQVSGILEKFQMTGKDKDYRYMATSDLLNELNKDSFKIDLDLEVRLSSIILQQLDDV 60

Query: 59   AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118
            AGDVSGLAVKCLAPLVKKV E R+VEMT+KLC KLL+GKDQHRD ASIAL+T++A++   
Sbjct: 61   AGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCDKLLHGKDQHRDTASIALRTVVAQIA-P 119

Query: 119  SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
            +LA SI  +LTPQ+  GI+ + M++ I+CECL+I+CDV+ K+G+LM++DHE+LL+ LL Q
Sbjct: 120  TLAPSILVTLTPQMIGGISGQGMSSGIKCECLEIMCDVVQKYGSLMTDDHEKLLNTLLLQ 179

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L  NQA+VRKK+V+CIASLASSLSDDLLAKAT+EVV+NL ++ AK E+ RTNIQM+GAL 
Sbjct: 180  LGCNQATVRKKTVTCIASLASSLSDDLLAKATVEVVKNLSNRNAKSEITRTNIQMIGALC 239

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            RAVGYRFG HLG+TVPVLI+YCTSASENDEELREYSLQALESFLLRCPRDIS YCDEIL+
Sbjct: 240  RAVGYRFGTHLGNTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDISPYCDEILN 299

Query: 299  LTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358
            LTLEY+SYDPNFTDNMEED+D+E  E+EE+DESANEYTDDEDASWKVRRAAAKCLA LIV
Sbjct: 300  LTLEYISYDPNFTDNMEEDTDNETLEDEEDDESANEYTDDEDASWKVRRAAAKCLAGLIV 359

Query: 359  SRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418
            SR EML+K+Y+EACPKLIDRFKEREENVKMDVFNTFI+L+RQTGNVTKGQ D +E +P+W
Sbjct: 360  SRSEMLTKVYQEACPKLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTDESSPKW 419

Query: 419  LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478
            LLKQEVSKIVKSINRQLREKS+KTKVGAFSVLRELVVVLPDCLADHIGSL+PGIE++LND
Sbjct: 420  LLKQEVSKIVKSINRQLREKSVKTKVGAFSVLRELVVVLPDCLADHIGSLVPGIERALND 479

Query: 479  KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 538
            KSSTSNLKIEAL FT+LVL+SH+PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL
Sbjct: 480  KSSTSNLKIEALVFTKLVLASHAPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 539

Query: 539  VRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598
            VRV+RPS  G+GFDFKP+V PIYNAIMSRLTNQDQDQEVKECAI+CMGLVISTFGD L A
Sbjct: 540  VRVVRPSTAGMGFDFKPFVHPIYNAIMSRLTNQDQDQEVKECAITCMGLVISTFGDQLRA 599

Query: 599  ELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRAL 658
            ELP+CLPVLVDRMGNEITRLTAVKAF+VIA SPLHI+L+CVL+H+IAELT FLRKANR L
Sbjct: 600  ELPSCLPVLVDRMGNEITRLTAVKAFSVIATSPLHINLSCVLDHLIAELTGFLRKANRVL 659

Query: 659  RQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSS 718
            RQATL TMN+LV AYGDKIG+ AYEVI+VELS+LIS SDLHMTALALELCCTLM  K  S
Sbjct: 660  RQATLITMNTLVTAYGDKIGSEAYEVILVELSSLISVSDLHMTALALELCCTLMTGKSCS 719

Query: 719  PNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKP 778
             N+ LAVRNKVLPQAL L+KS LLQGQAL+ LQ FF ALVY ANTSF TLL+SLLS AKP
Sbjct: 720  ENISLAVRNKVLPQALTLVKSPLLQGQALLDLQKFFEALVYHANTSFYTLLESLLSCAKP 779

Query: 779  SPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCL 838
            SPQSGGV KQA+YSIAQCVAVLCLAAGD+ CSSTVKML +ILKDDS TNSAKQHLALL L
Sbjct: 780  SPQSGGVPKQALYSIAQCVAVLCLAAGDKNCSSTVKMLMEILKDDSGTNSAKQHLALLSL 839

Query: 839  GEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ 898
            GEIGRRKDLS+H  IE ++IESFQSPFEEIKSAASYALGNIAVGNLS +LPFILDQIDNQ
Sbjct: 840  GEIGRRKDLSAHAGIETIVIESFQSPFEEIKSAASYALGNIAVGNLSNYLPFILDQIDNQ 899

Query: 899  QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIA 958
            QKKQY+LLHSLKEVIVRQSVDKA+FQ+SSVEKIL LLFNHCESEEEGVRNVVAECLGK+A
Sbjct: 900  QKKQYILLHSLKEVIVRQSVDKADFQNSSVEKILALLFNHCESEEEGVRNVVAECLGKMA 959

Query: 959  LIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD 1018
            LIEP KLVPAL+VRTTS AAFTRATVV A+KYS+VERPEK+DEIIFP+ISSFLMLIKD D
Sbjct: 960  LIEPEKLVPALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLMLIKDGD 1019

Query: 1019 RHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGL 1078
            RHVRRAAV ALSTFAH KPNLIKGLLPELLPLLYDQT++KKELIRTVDLGPFKH VDDGL
Sbjct: 1020 RHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQTVIKKELIRTVDLGPFKHVVDDGL 1079

Query: 1079 ELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAV 1138
            ELRKAAFECV TL+DSCLDQVNPSSFIVP+LKSGLEDHYD+KM CHLILS LADKCPSAV
Sbjct: 1080 ELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLEDHYDLKMLCHLILSLLADKCPSAV 1139

Query: 1139 LA 1140
            LA
Sbjct: 1140 LA 1141
Required for SCF(TIR1) function. Modulates SCF(TIR1) function through its interactions with the CUL1 subunit. Positively regulates multiple E3 ubiquitin-protein ligase complexes and their associated developmental processes. Represses photomorphogenesis by promoting HY5 degradation in darkness.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5R6L5|CAND1_PONAB Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VP6|CAND1_HUMAN Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2 Back     alignment and function description
>sp|A7MBJ5|CAND1_BOVIN Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZQ38|CAND1_MOUSE Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2 Back     alignment and function description
>sp|P97536|CAND1_RAT Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2 Back     alignment and function description
>sp|Q86KD1|CAND1_DICDI Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1 Back     alignment and function description
>sp|O75155|CAND2_HUMAN Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3 Back     alignment and function description
>sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1167
3594862351218 PREDICTED: cullin-associated NEDD8-disso 0.976 0.935 0.907 0.0
2555738141218 tip120, putative [Ricinus communis] gi|2 0.976 0.935 0.909 0.0
2977394521245 unnamed protein product [Vitis vinifera] 0.976 0.915 0.887 0.0
2241198521215 predicted protein [Populus trichocarpa] 0.974 0.935 0.897 0.0
4494318941218 PREDICTED: cullin-associated NEDD8-disso 0.976 0.935 0.894 0.0
2241297981223 predicted protein [Populus trichocarpa] 0.976 0.932 0.893 0.0
3565636921218 PREDICTED: cullin-associated NEDD8-disso 0.976 0.935 0.888 0.0
3565221131218 PREDICTED: cullin-associated NEDD8-disso 0.976 0.935 0.887 0.0
793165481217 cullin-associated NEDD8-dissociated prot 0.976 0.935 0.834 0.0
2978145061219 cullin-associated and neddylation dissoc 0.976 0.934 0.833 0.0
>gi|359486235|ref|XP_003633418.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2066 bits (5352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1035/1140 (90%), Positives = 1095/1140 (96%)

Query: 1    MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAG 60
            MANL + +ILEK+TGKDKD+RYMATSDLLNELNKE F+ADADLE+KLSNIV+QQLDD AG
Sbjct: 1    MANLAITSILEKMTGKDKDYRYMATSDLLNELNKEGFRADADLEIKLSNIVLQQLDDAAG 60

Query: 61   DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL 120
            DVSGLAVKCLAPLVKKVSE R+VEMT+KLC KLLNGKDQHRDIASIALKTI++EVTTS++
Sbjct: 61   DVSGLAVKCLAPLVKKVSETRLVEMTNKLCDKLLNGKDQHRDIASIALKTIVSEVTTSAV 120

Query: 121  AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS 180
            AQ +  SL+PQL KGIT   M TE++CECLDILCDVLHKFGNLM+ DHE LL ALL QLS
Sbjct: 121  AQCVLVSLSPQLIKGITSPGMTTEMKCECLDILCDVLHKFGNLMATDHELLLGALLSQLS 180

Query: 181  ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240
            +NQASVRKK+VSCIASLASSLSDDLLAKAT+EVVRNLRSKG KPEM RTNIQM+GALSRA
Sbjct: 181  SNQASVRKKTVSCIASLASSLSDDLLAKATVEVVRNLRSKGVKPEMTRTNIQMIGALSRA 240

Query: 241  VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300
            VGYRFG HLGDTVPVLI+YCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT
Sbjct: 241  VGYRFGSHLGDTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300

Query: 301  LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360
            LEYLSYDPNFTDNMEED+DDE +EEEE+DESA EYTDDED SWKVRRAAAKCLAALIVSR
Sbjct: 301  LEYLSYDPNFTDNMEEDTDDENHEEEEDDESATEYTDDEDVSWKVRRAAAKCLAALIVSR 360

Query: 361  PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420
            PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL+RQTGNVTKGQ D NEL+PRWLL
Sbjct: 361  PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELLRQTGNVTKGQTDMNELSPRWLL 420

Query: 421  KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS 480
            KQEV KIVKSINRQLREK+IKTKVGAFSVL+ELVVVLPDCLADHIGSLI GIEK+L+DKS
Sbjct: 421  KQEVPKIVKSINRQLREKTIKTKVGAFSVLKELVVVLPDCLADHIGSLISGIEKALSDKS 480

Query: 481  STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 540
            STSNLKIEAL FTRLVL+SHSP VFHPYIKALSSPVL+AVGERYYKVTAEALRVCGELVR
Sbjct: 481  STSNLKIEALIFTRLVLASHSPSVFHPYIKALSSPVLSAVGERYYKVTAEALRVCGELVR 540

Query: 541  VLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAEL 600
            V+RP++EG GFDFKPYV PIYNAIM+RLTNQDQDQEVKECAISCMGL++STFGDNL AEL
Sbjct: 541  VVRPNIEGYGFDFKPYVHPIYNAIMTRLTNQDQDQEVKECAISCMGLLVSTFGDNLRAEL 600

Query: 601  PACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQ 660
            PACLPVLVDRMGNEITRLTAVKAFAVIA SPL+IDL+CVLEHVIAELTAFLRKANRALRQ
Sbjct: 601  PACLPVLVDRMGNEITRLTAVKAFAVIATSPLNIDLSCVLEHVIAELTAFLRKANRALRQ 660

Query: 661  ATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPN 720
            ATLGT+NSL+VAYGDKIG+SAYEVIIVELS+LISDSDLHMTALALELCCTLMADKR+SPN
Sbjct: 661  ATLGTLNSLIVAYGDKIGSSAYEVIIVELSSLISDSDLHMTALALELCCTLMADKRASPN 720

Query: 721  VGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSP 780
            VGLAVRNKVLPQAL LIKSSLLQGQAL+ALQ+FFA LVYSANTSFD LLDSLLSSAKPSP
Sbjct: 721  VGLAVRNKVLPQALTLIKSSLLQGQALMALQNFFATLVYSANTSFDALLDSLLSSAKPSP 780

Query: 781  QSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGE 840
            QSGGVAKQA+ SIAQCVAVLCLAAGDQKCS+TVKMLTDIL+DDSS+NSAKQHLALLCLGE
Sbjct: 781  QSGGVAKQALCSIAQCVAVLCLAAGDQKCSTTVKMLTDILRDDSSSNSAKQHLALLCLGE 840

Query: 841  IGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQK 900
            IGRRKDLSSH HIEN++IESFQSPFEEIKSAASYALGNIAVGNLSK+LPFILDQIDNQQK
Sbjct: 841  IGRRKDLSSHAHIENIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILDQIDNQQK 900

Query: 901  KQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALI 960
            KQYLLLHSLKEVIVRQSVDKAEFQDSSVEKIL LLFNHCESEEEGVRNVVAECLGKIALI
Sbjct: 901  KQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILKLLFNHCESEEEGVRNVVAECLGKIALI 960

Query: 961  EPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1020
            EPAKLVPALKVRT S AAFTRATVVIA+KYSIVERPEKIDEII+PEISSFLMLIKD DRH
Sbjct: 961  EPAKLVPALKVRTASPAAFTRATVVIAVKYSIVERPEKIDEIIYPEISSFLMLIKDHDRH 1020

Query: 1021 VRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLEL 1080
            VRRAAVLALST AHNKPNLIKGLLPELLPLLYDQTIVK+ELIRTVDLGPFKH VDDGLEL
Sbjct: 1021 VRRAAVLALSTAAHNKPNLIKGLLPELLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLEL 1080

Query: 1081 RKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLA 1140
            RKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGL+DHYDVKMPCHLILSKLADKCPSAVLA
Sbjct: 1081 RKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLA 1140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573814|ref|XP_002527826.1| tip120, putative [Ricinus communis] gi|223532750|gb|EEF34529.1| tip120, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297739452|emb|CBI29634.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119852|ref|XP_002331078.1| predicted protein [Populus trichocarpa] gi|222872806|gb|EEF09937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449431894|ref|XP_004133735.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224129798|ref|XP_002328805.1| predicted protein [Populus trichocarpa] gi|222839103|gb|EEE77454.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563692|ref|XP_003550095.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356522113|ref|XP_003529694.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|79316548|ref|NP_001030954.1| cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana] gi|3184283|gb|AAC18930.1| unknown protein [Arabidopsis thaliana] gi|330250502|gb|AEC05596.1| cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814506|ref|XP_002875136.1| cullin-associated and neddylation dissociated, hemivenata [Arabidopsis lyrata subsp. lyrata] gi|297320974|gb|EFH51395.1| cullin-associated and neddylation dissociated, hemivenata [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1167
TAIR|locus:20652791219 CAND1 "cullin-associated and n 0.976 0.934 0.777 0.0
UNIPROTKB|A7MBJ51230 CAND1 "Cullin-associated NEDD8 0.963 0.913 0.432 2.2e-240
UNIPROTKB|Q86VP61230 CAND1 "Cullin-associated NEDD8 0.963 0.913 0.432 2.2e-240
RGD|6204791230 Cand1 "cullin-associated and n 0.963 0.913 0.431 2.5e-239
MGI|MGI:12618201230 Cand1 "cullin associated and n 0.963 0.913 0.431 3.2e-239
UNIPROTKB|F1P6241208 CAND1 "Uncharacterized protein 0.946 0.914 0.431 3.4e-235
UNIPROTKB|E1C7411239 CAND2 "Uncharacterized protein 0.982 0.925 0.415 1.2e-234
UNIPROTKB|F1NHL21159 CAND1 "Uncharacterized protein 0.904 0.911 0.426 1.2e-221
FB|FBgn00275681248 Cand1 "Cullin-associated and n 0.964 0.901 0.398 8.7e-214
UNIPROTKB|O751551236 CAND2 "Cullin-associated NEDD8 0.963 0.909 0.387 7.5e-208
TAIR|locus:2065279 CAND1 "cullin-associated and neddylation dissociated" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4509 (1592.3 bits), Expect = 0., P = 0.
 Identities = 888/1142 (77%), Positives = 988/1142 (86%)

Query:     1 MANLQMAAILEK--ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV 58
             MANLQ++ ILEK  +TGKDKD+RYMATSDLLNELNK+SFK D DLEV+LS+I++QQLDDV
Sbjct:     1 MANLQVSGILEKFQMTGKDKDYRYMATSDLLNELNKDSFKIDLDLEVRLSSIILQQLDDV 60

Query:    59 AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118
             AGDVSGLAVKCLAPLVKKV E R+VEMT+KLC KLL+GKDQHRD ASIAL+T++A++  +
Sbjct:    61 AGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCDKLLHGKDQHRDTASIALRTVVAQIAPT 120

Query:   119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
              LA SI  +LTPQ+  GI+ + M++ I+CECL+I+CDV+ K+G+LM++DHE+LL+ LL Q
Sbjct:   121 -LAPSILVTLTPQMIGGISGQGMSSGIKCECLEIMCDVVQKYGSLMTDDHEKLLNTLLLQ 179

Query:   179 LSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
             L  NQA+VRKK+V+CI               T+EVV+NL ++ AK E+ RTNIQM+GAL 
Sbjct:   180 LGCNQATVRKKTVTCIASLASSLSDDLLAKATVEVVKNLSNRNAKSEITRTNIQMIGALC 239

Query:   239 RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
             RAVGYRFG HLG+TVPVLI+YCTSASENDEELREYSLQALESFLLRCPRDIS YCDEIL+
Sbjct:   240 RAVGYRFGTHLGNTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDISPYCDEILN 299

Query:   299 LTLEYLSYDPNFTDNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAKCLAALIV 358
             LTLEY+SYDPNFTDNM                     TDDEDASWKVRRAAAKCLA LIV
Sbjct:   300 LTLEYISYDPNFTDNMEEDTDNETLEDEEDDESANEYTDDEDASWKVRRAAAKCLAGLIV 359

Query:   359 SRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418
             SR EML+K+Y+EACPKLIDRFKEREENVKMDVFNTFI+L+RQTGNVTKGQ D +E +P+W
Sbjct:   360 SRSEMLTKVYQEACPKLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTDESSPKW 419

Query:   419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478
             LLKQEVSKIVKSINRQLREKS+KTKVGAFSVLRELVVVLPDCLADHIGSL+PGIE++LND
Sbjct:   420 LLKQEVSKIVKSINRQLREKSVKTKVGAFSVLRELVVVLPDCLADHIGSLVPGIERALND 479

Query:   479 KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 538
             KSSTSNLKIEAL FT+LVL+SH+PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL
Sbjct:   480 KSSTSNLKIEALVFTKLVLASHAPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 539

Query:   539 VRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598
             VRV+RPS  G+GFDFKP+V PIYNAIMSRLTNQDQDQEVKECAI+CMGLVISTFGD L A
Sbjct:   540 VRVVRPSTAGMGFDFKPFVHPIYNAIMSRLTNQDQDQEVKECAITCMGLVISTFGDQLRA 599

Query:   599 ELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRAL 658
             ELP+CLPVLVDRMGNEITRLTAVKAF+VIA SPLHI+L+CVL+H+IAELT FLRKANR L
Sbjct:   600 ELPSCLPVLVDRMGNEITRLTAVKAFSVIATSPLHINLSCVLDHLIAELTGFLRKANRVL 659

Query:   659 RQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSS 718
             RQATL TMN+LV AYGDKIG+ AYEVI+VELS+LIS SDLHMTALALELCCTLM  K  S
Sbjct:   660 RQATLITMNTLVTAYGDKIGSEAYEVILVELSSLISVSDLHMTALALELCCTLMTGKSCS 719

Query:   719 PNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXXXXXXXXXXAKP 778
              N+ LAVRNKVLPQAL L+KS LLQGQAL+ LQ FF ALVY AN             AKP
Sbjct:   720 ENISLAVRNKVLPQALTLVKSPLLQGQALLDLQKFFEALVYHANTSFYTLLESLLSCAKP 779

Query:   779 SPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCL 838
             SPQSGGV KQA+YSIAQCVAVLCLAAGD+ CSSTVKML +ILKDDS TNSAKQHLALL L
Sbjct:   780 SPQSGGVPKQALYSIAQCVAVLCLAAGDKNCSSTVKMLMEILKDDSGTNSAKQHLALLSL 839

Query:   839 GEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ 898
             GEIGRRKDLS+H  IE ++IESFQSPFEEIKSAASYALGNIAVGNLS +LPFILDQIDNQ
Sbjct:   840 GEIGRRKDLSAHAGIETIVIESFQSPFEEIKSAASYALGNIAVGNLSNYLPFILDQIDNQ 899

Query:   899 QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIA 958
             QKKQY+LLHSLKEVIVRQSVDKA+FQ+SSVEKIL LLFNHCESEEEGVRNVVAECLGK+A
Sbjct:   900 QKKQYILLHSLKEVIVRQSVDKADFQNSSVEKILALLFNHCESEEEGVRNVVAECLGKMA 959

Query:   959 LIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD 1018
             LIEP KLVPAL+                A+KYS+VERPEK+DEIIFP+ISSFLMLIKD D
Sbjct:   960 LIEPEKLVPALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLMLIKDGD 1019

Query:  1019 RHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGL 1078
             RHVRRAAV ALSTFAH KPNLIKG         YDQT++KKELIRTVDLGPFKH VDDGL
Sbjct:  1020 RHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQTVIKKELIRTVDLGPFKHVVDDGL 1079

Query:  1079 ELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAV 1138
             ELRKAAFECV TL+DSCLDQVNPSSFIVP+LKSGLEDHYD+KM CHLILS LADKCPSAV
Sbjct:  1080 ELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLEDHYDLKMLCHLILSLLADKCPSAV 1139

Query:  1139 LA 1140
             LA
Sbjct:  1140 LA 1141
GO:0005634 "nucleus" evidence=ISM
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP
GO:0005618 "cell wall" evidence=IDA
GO:0010051 "xylem and phloem pattern formation" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
UNIPROTKB|A7MBJ5 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VP6 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620479 Cand1 "cullin-associated and neddylation-dissociated 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1261820 Cand1 "cullin associated and neddylation disassociated 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P624 CAND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C741 CAND2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHL2 CAND1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0027568 Cand1 "Cullin-associated and neddylation-dissociated 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O75155 CAND2 "Cullin-associated NEDD8-dissociated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q86VP6CAND1_HUMANNo assigned EC number0.44320.95110.9024yesno
Q86KD1CAND1_DICDINo assigned EC number0.39820.95970.9046yesno
P97536CAND1_RATNo assigned EC number0.44240.95110.9024yesno
Q6ZQ38CAND1_MOUSENo assigned EC number0.44240.95110.9024yesno
A7MBJ5CAND1_BOVINNo assigned EC number0.44320.95110.9024yesno
Q5R6L5CAND1_PONABNo assigned EC number0.44180.95370.9048yesno
Q8L5Y6CAND1_ARATHNo assigned EC number0.83270.97600.9343yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1167
pfam08623169 pfam08623, TIP120, TATA-binding protein interactin 5e-40
>gnl|CDD|219941 pfam08623, TIP120, TATA-binding protein interacting (TIP20) Back     alignment and domain information 
 Score =  145 bits (368), Expect = 5e-40
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 1038 NLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLD 1097
            +LI  LL ELLP LY +T VKKELIR V +GPFKH VDDGLELRK A+E + TLLDSC  
Sbjct: 1    DLILPLLNELLPALYSETKVKKELIREVQMGPFKHVVDDGLELRKLAYETMYTLLDSCFS 60

Query: 1098 QVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADF 1142
            +++   F+   +++GL D +D+KM   L+LSKLA   P  VLA  
Sbjct: 61   RLDIPEFLD-RIEAGLSDEHDIKMLALLMLSKLAVLAPEEVLARL 104

TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription. Length = 169

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1167
KOG18241233 consensus TATA-binding protein-interacting protein 100.0
KOG18241233 consensus TATA-binding protein-interacting protein 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.97
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 99.97
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.94
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.94
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.89
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.87
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.86
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.85
KOG1242569 consensus Protein containing adaptin N-terminal re 99.84
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.81
KOG1242569 consensus Protein containing adaptin N-terminal re 99.79
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.77
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.74
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.59
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.58
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.58
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.51
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.48
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.47
KOG12481176 consensus Uncharacterized conserved protein [Funct 99.46
PTZ00429746 beta-adaptin; Provisional 99.45
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.44
KOG12481176 consensus Uncharacterized conserved protein [Funct 99.42
PTZ00429746 beta-adaptin; Provisional 99.37
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.34
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.33
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.32
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.28
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.25
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.18
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.17
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.14
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 99.12
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.11
PRK09687280 putative lyase; Provisional 99.09
PRK09687280 putative lyase; Provisional 99.06
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.06
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.05
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.02
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.01
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.0
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.94
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.92
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 98.87
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.86
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.85
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 98.84
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.77
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.67
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.64
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.64
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.63
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.62
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.59
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.58
COG5656970 SXM1 Importin, protein involved in nuclear import 98.56
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.4
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.39
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.29
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.27
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.2
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.16
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.15
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.15
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.14
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.14
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.13
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 98.09
KOG2956516 consensus CLIP-associating protein [General functi 98.04
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.0
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.0
PF05004309 IFRD: Interferon-related developmental regulator ( 97.99
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.97
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 97.96
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.95
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.94
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.91
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.91
KOG04141251 consensus Chromosome condensation complex Condensi 97.89
KOG01681051 consensus Putative ubiquitin fusion degradation pr 97.88
KOG2956516 consensus CLIP-associating protein [General functi 97.87
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.86
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.86
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.84
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.82
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.81
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.79
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.76
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.73
KOG18222067 consensus Uncharacterized conserved protein [Funct 97.73
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.7
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.68
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.64
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.63
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.61
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.6
PF05004309 IFRD: Interferon-related developmental regulator ( 97.58
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.57
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 97.56
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.54
COG5656970 SXM1 Importin, protein involved in nuclear import 97.53
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.51
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.5
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.47
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.46
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.44
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.42
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.42
PF05804708 KAP: Kinesin-associated protein (KAP) 97.36
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.31
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.3
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.3
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.3
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 97.29
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 97.29
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 97.28
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.25
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.25
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.25
KOG04131529 consensus Uncharacterized conserved protein relate 97.24
KOG2062 929 consensus 26S proteasome regulatory complex, subun 97.23
PF05804708 KAP: Kinesin-associated protein (KAP) 97.22
TIGR02270410 conserved hypothetical protein. Members are found 97.21
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.18
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 97.14
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.14
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.11
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.09
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.08
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.03
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 96.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.97
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.95
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 96.91
TIGR02270410 conserved hypothetical protein. Members are found 96.9
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 96.89
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.87
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.87
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.84
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.83
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.76
KOG45241014 consensus Uncharacterized conserved protein [Funct 96.7
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.66
COG5096757 Vesicle coat complex, various subunits [Intracellu 96.65
KOG2062 929 consensus 26S proteasome regulatory complex, subun 96.63
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.62
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.6
KOG2081559 consensus Nuclear transport regulator [Intracellul 96.6
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.59
KOG1243690 consensus Protein kinase [General function predict 96.56
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.53
KOG0567289 consensus HEAT repeat-containing protein [General 96.51
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 96.5
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.34
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.33
KOG2025892 consensus Chromosome condensation complex Condensi 96.29
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.17
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.15
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.1
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.01
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 95.95
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.94
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 95.9
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.88
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 95.87
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 95.69
KOG2973353 consensus Uncharacterized conserved protein [Funct 95.64
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.57
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.56
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.56
KOG2137700 consensus Protein kinase [Signal transduction mech 95.55
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.51
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.45
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.43
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 95.33
KOG2549576 consensus Transcription initiation factor TFIID, s 95.28
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.27
KOG0567289 consensus HEAT repeat-containing protein [General 95.15
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 95.13
KOG1243690 consensus Protein kinase [General function predict 95.06
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.02
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.02
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.94
COG5116 926 RPN2 26S proteasome regulatory complex component [ 94.92
KOG19491005 consensus Uncharacterized conserved protein [Funct 94.8
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.79
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 94.77
KOG15171387 consensus Guanine nucleotide binding protein MIP1 94.75
PF05536543 Neurochondrin: Neurochondrin 94.72
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.54
KOG2137700 consensus Protein kinase [Signal transduction mech 94.53
KOG2933334 consensus Uncharacterized conserved protein [Funct 94.51
KOG2549576 consensus Transcription initiation factor TFIID, s 94.44
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.38
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.38
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 94.25
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 94.15
KOG2081559 consensus Nuclear transport regulator [Intracellul 94.14
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.11
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 93.95
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 93.82
KOG4413524 consensus 26S proteasome regulatory complex, subun 93.79
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 93.77
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 93.66
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 93.56
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.52
KOG2140739 consensus Uncharacterized conserved protein [Gener 93.26
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 93.19
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 93.11
KOG1293678 consensus Proteins containing armadillo/beta-caten 93.07
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 92.87
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 92.86
KOG18371621 consensus Uncharacterized conserved protein [Funct 92.8
KOG2025892 consensus Chromosome condensation complex Condensi 92.78
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 92.66
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 92.45
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.4
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 91.85
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 91.15
PF1036392 DUF2435: Protein of unknown function (DUF2435) 91.06
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.88
KOG18481610 consensus Uncharacterized conserved protein [Funct 90.71
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 90.62
PF05536543 Neurochondrin: Neurochondrin 90.41
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 89.89
PF05327563 RRN3: RNA polymerase I specific transcription init 89.88
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 89.31
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 89.1
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 88.63
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 88.54
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 88.35
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 88.21
KOG19261129 consensus Predicted regulator of rRNA gene transcr 87.81
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 87.44
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 87.03
smart00638574 LPD_N Lipoprotein N-terminal Domain. 86.58
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 86.55
KOG3961262 consensus Uncharacterized conserved protein [Funct 85.5
KOG18371621 consensus Uncharacterized conserved protein [Funct 85.05
KOG45241014 consensus Uncharacterized conserved protein [Funct 84.78
KOG1293678 consensus Proteins containing armadillo/beta-caten 84.6
KOG18511710 consensus Uncharacterized conserved protein [Funct 84.56
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 84.53
PF10350255 DUF2428: Putative death-receptor fusion protein (D 84.32
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 84.15
COG5218885 YCG1 Chromosome condensation complex Condensin, su 83.89
KOG18511710 consensus Uncharacterized conserved protein [Funct 83.81
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 83.55
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 82.53
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 81.75
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 81.59
KOG2005878 consensus 26S proteasome regulatory complex, subun 81.47
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 81.08
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 81.07
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 81.01
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 80.46
PF05997217 Nop52: Nucleolar protein,Nop52; InterPro: IPR01030 80.27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-182  Score=1512.79  Aligned_cols=1145  Identities=52%  Similarity=0.817  Sum_probs=1074.4

Q ss_pred             CchHHHH-HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh
Q 001062            1 MANLQMA-AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE   79 (1167)
Q Consensus         1 ~~~~~i~-~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~   79 (1167)
                      |+++... .+++||.++|+|+||||+|||+++|+++.+++|++++++++++++++|+|.|+||||.|+||+|+++.++++
T Consensus         1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke   80 (1233)
T KOG1824|consen    1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE   80 (1233)
T ss_pred             CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH
Confidence            8888888 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062           80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS---SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV  156 (1167)
Q Consensus        80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~---~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l  156 (1167)
                      ++++.+++.||..+.+++.+.|++++++|++++.++++.   .++..+++.+.|+|.+++...+....++.+++|+++++
T Consensus        81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~  160 (1233)
T KOG1824|consen   81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV  160 (1233)
T ss_pred             HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999974   46788999999999999987765667999999999999


Q ss_pred             HHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001062          157 LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGA  236 (1167)
Q Consensus       157 ~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~  236 (1167)
                      ..++|..+.++|..++..++..+.+++..|||+|+.|+|.++.+++...+..+++++..++..+.. ....+++++++++
T Consensus       161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~  239 (1233)
T KOG1824|consen  161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ-MSATRTYIQCLAA  239 (1233)
T ss_pred             HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999977643 4667799999999


Q ss_pred             HHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCC
Q 001062          237 LSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEE  316 (1167)
Q Consensus       237 l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~  316 (1167)
                      +++..|++|+.|++.++|++.++++..+++|||+||+|+++++.|+.+||.++.||+++++++++++++|||||.++++|
T Consensus       240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~e  319 (1233)
T KOG1824|consen  240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEE  319 (1233)
T ss_pred             HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCcc
Confidence            99999999999999999999999976666899999999999999999999999999999999999999999999988876


Q ss_pred             CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHH
Q 001062          317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE  396 (1167)
Q Consensus       317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~  396 (1167)
                      |++.|..+|.+|||.+++|+||||+||||||||++|+.++|.++++.+..+|+.+.|.++.|||||||+|+.+++.++..
T Consensus       320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~  399 (1233)
T KOG1824|consen  320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA  399 (1233)
T ss_pred             chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            65555545555556679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCccCC---CCCch---HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHH
Q 001062          397 LVRQTGNVTKGQIDN---NELNP---RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIP  470 (1167)
Q Consensus       397 l~~~~~~~~~~~~~~---~~~~p---~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~  470 (1167)
                      +++++++..+|-.+.   ..+++   ...+.++.|.|++.+.+++++++.++|+.|+..|.+++.+.|+.+.+|++.++|
T Consensus       400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvp  479 (1233)
T KOG1824|consen  400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVP  479 (1233)
T ss_pred             HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccch
Confidence            999998766665431   12333   367889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccC
Q 001062          471 GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLG  550 (1167)
Q Consensus       471 ~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~  550 (1167)
                      .|...|+|++..+..+++++.++..++.+|+|+.|+||++.+.|.+..+++|++|++..||+.++++++++++|...+++
T Consensus       480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~  559 (1233)
T KOG1824|consen  480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS  559 (1233)
T ss_pred             hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence            99999999988888999999999999999999999999999999999999999999999999999999999998765556


Q ss_pred             CCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 001062          551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS  630 (1167)
Q Consensus       551 ~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~  630 (1167)
                      .++.||+.+++...++++..+|.|+|||++||.|+|.++.++|+.+...++.+++++++|++||.||..|++|+..|+.+
T Consensus       560 ~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S  639 (1233)
T KOG1824|consen  560 FDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMS  639 (1233)
T ss_pred             CCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHH
Q 001062          631 PLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT  710 (1167)
Q Consensus       631 ~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~  710 (1167)
                      +...++.+.+..+++++..++++++|.+|.+++.++..++.+++..++...++.++.++.++++++|.++.+.++.++..
T Consensus       640 ~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t  719 (1233)
T KOG1824|consen  640 PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT  719 (1233)
T ss_pred             cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            98888999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCCh--HHHHHHHhhcCCCCCCCcchhhh
Q 001062          711 LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF--DTLLDSLLSSAKPSPQSGGVAKQ  788 (1167)
Q Consensus       711 l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~--~~ll~~L~~~~~~~~~~~~~~~~  788 (1167)
                      +...   .|.....+...+++.++.+++||++||.++.+++.++.+++....+.+  ..++..+..++.+ +...+++++
T Consensus       720 l~~~---~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~-~~~~~l~kq  795 (1233)
T KOG1824|consen  720 LAII---QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE-QVTDGLHKQ  795 (1233)
T ss_pred             HHhc---ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc-ccccchhHH
Confidence            9998   787777789999999999999999999999999999999998775544  4566667766633 345578899


Q ss_pred             hhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhH
Q 001062          789 AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEI  868 (1167)
Q Consensus       789 a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~v  868 (1167)
                      ++.++|+|+|.++...++ ....+..+++.++.+ +..+...+.++++++||+|++.++++.+++.++++++|++++|+|
T Consensus       796 a~~siA~cvA~Lt~~~~~-~s~s~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edv  873 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQ-KSKSLATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDV  873 (1233)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhHHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHH
Confidence            999999999999876654 556788889888876 356778899999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhh
Q 001062          869 KSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRN  948 (1167)
Q Consensus       869 r~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~  948 (1167)
                      +.||++|||.+++||++.|+|+|++++.+++++||++|+||||++...+.+   .+.|+++.||+.||++|++.+|++|+
T Consensus       874 ksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd---~~~~~v~~IW~lL~k~cE~~eegtR~  950 (1233)
T KOG1824|consen  874 KSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVD---GLKPYVEKIWALLFKHCECAEEGTRN  950 (1233)
T ss_pred             HHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHhcccchhhhHH
Confidence            999999999999999999999999999999999999999999999988775   67899999999999999999999999


Q ss_pred             HHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 001062          949 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1028 (1167)
Q Consensus       949 ~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~ 1028 (1167)
                      ++|||||+++.++|+.++|.|...+.++.+..|.++++++||.+++.....+++++++|+.|+..++|+|.+|||+|+.+
T Consensus       951 vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen  951 VVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVV 1030 (1233)
T ss_pred             HHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHH
Q 001062         1029 LSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPY 1108 (1167)
Q Consensus      1029 L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~ 1108 (1167)
                      +++++||+|.++++.++++||.||.+|++|+++||+|+||||||+||||+++||+||||||||++.|++++|+.+|+ ++
T Consensus      1031 ~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl-~~ 1109 (1233)
T KOG1824|consen 1031 LNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL-NH 1109 (1233)
T ss_pred             HHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HhcccCCcchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhccc
Q 001062         1109 LKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGL 1156 (1167)
Q Consensus      1109 ~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~ 1156 (1167)
                      +..||.||+|||+++++||.+++..+|+.|.+++|+++++|+++...=
T Consensus      1110 ~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k 1157 (1233)
T KOG1824|consen 1110 VEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLK 1157 (1233)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999987643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription] Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1167
1u6g_C1230 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 0.0
4a0c_A1253 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 0.0
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 1230 Back     alignment and structure 
Iteration: 1

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1153 (43%), Positives = 730/1153 (63%), Gaps = 32/1153 (2%)
Query: 2    ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
            A+  ++ +LEK+T  DKDFR+MAT+DL+ EL K+S K D D E K+  ++++ L+D  G+
Sbjct: 4    ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 62   VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117
            V  LAVKCL PLV KV E +V  + D LC  +L+ K+Q RDI+SI LKT+I E+    + 
Sbjct: 64   VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 118  SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177
            S+LA ++   +T +LT  I  K  +  ++ E LDI+ D+L + G L+ N H  +L+ LLP
Sbjct: 124  SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 182
Query: 178  QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234
            QL++ + +VRK+++  +                ++++ +L S+ +K + +   RT IQ +
Sbjct: 183  QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 238
Query: 235  GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294
             A+SR  G+R G +L   +P+++ +C     +D+ELREY +QA ESF+ RCP+++  +  
Sbjct: 239  AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 295
Query: 295  EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351
             I+++ L+YL+YDPN+    ++                      +DD+D SWKVRRAAAK
Sbjct: 296  TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355
Query: 352  CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411
            CL A++ +R EML + Y+   P LI RFKEREENVK DVF+ ++ L++QT  V     D 
Sbjct: 356  CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 415
Query: 412  NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467
            + +     P  +L+ +V  IVK++++Q++EKS+KT+   F++L ELV VLP  L  HI  
Sbjct: 416  DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475
Query: 468  LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKV 527
            L+PGI  SLNDKSS+SNLKI+AL+   ++L +HSP VFHP+++AL  PV+A VG+ +YK+
Sbjct: 476  LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 535
Query: 528  TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587
            T+EAL V  +LV+V+RP  +   FD  PY++ ++   + RL   D DQEVKE AISCMG 
Sbjct: 536  TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
Query: 588  VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647
            +I   GDNLG++LP  L + ++R+ NEITRLT VKA  +IA SPL IDL  VL   +  L
Sbjct: 596  IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655
Query: 648  TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707
             +FLRK  RAL+  TL  ++ L+  Y D + A+  + ++ EL  LIS+SD+H++ +A+  
Sbjct: 656  ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 715
Query: 708  CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXX 767
              TL    +  P+    +   +L + + L++S LLQG AL A+  FF ALV +       
Sbjct: 716  LTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772
Query: 768  XXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSST 826
                         QS  +  KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRST 831
Query: 827  NSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSK 886
            +S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL +
Sbjct: 832  DSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 890
Query: 887  FLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGV 946
            +LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG 
Sbjct: 891  YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGT 947
Query: 947  RNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPE 1006
            RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   
Sbjct: 948  RNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC 1007
Query: 1007 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVD 1066
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V+
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVE 1067
Query: 1067 LGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLI 1126
            +GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+
Sbjct: 1068 MGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLM 1126
Query: 1127 LSKLADKCPSAVL 1139
            L +L+  CPSAVL
Sbjct: 1127 LVRLSTLCPSAVL 1139
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1253 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1167
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 0.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 7e-14
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-12
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-05
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-13
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-09
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-07
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-12
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 6e-10
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 2e-09
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-10
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 9e-10
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 4e-09
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 6e-08
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 1e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-07
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 2e-07
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 2e-05
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 3e-04
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-05
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 2e-05
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 2e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-05
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 3e-05
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 8e-05
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 5e-05
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 8e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 4e-04
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
 Score =  808 bits (2086), Expect = 0.0
 Identities = 507/1156 (43%), Positives = 756/1156 (65%), Gaps = 24/1156 (2%)

Query: 2    ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
            A+  ++ +LEK+T  DKDFR+MAT+DL+ EL K+S K D D E K+  ++++ L+D  G+
Sbjct: 4    ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 62   VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121
            V  LAVKCL PLV KV E +V  + D LC  +L+ K+Q RDI+SI LKT+I E+  +S  
Sbjct: 64   VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123

Query: 122  QSIHTSLTPQLTKGIT---LKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
             ++  ++  ++T  +T    K  +  ++ E LDI+ D+L + G L+ N H  +L+ LLPQ
Sbjct: 124  SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L++ + +VRK+++  +  L  S  + +       ++  L SK       RT IQ + A+S
Sbjct: 184  LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL-SKNDSMSTTRTYIQCIAAIS 242

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            R  G+R G +L   +P+++ +C   + +D+ELREY +QA ESF+ RCP+++  +   I++
Sbjct: 243  RQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN 299

Query: 299  LTLEYLSYDPNF---TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355
            + L+YL+YDPN+    ++ +E++ D    ++++  S +EY+DD+D SWKVRRAAAKCL A
Sbjct: 300  ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 359

Query: 356  LIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415
            ++ +R EML + Y+   P LI RFKEREENVK DVF+ ++ L++QT  V     D + + 
Sbjct: 360  VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 419

Query: 416  ----PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPG 471
                P  +L+ +V  IVK++++Q++EKS+KT+   F++L ELV VLP  L  HI  L+PG
Sbjct: 420  QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 479

Query: 472  IEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEA 531
            I  SLNDKSS+SNLKI+AL+   ++L +HSP VFHP+++AL  PV+A VG+ +YK+T+EA
Sbjct: 480  IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 539

Query: 532  LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591
            L V  +LV+V+RP  +   FD  PY++ ++   + RL   D DQEVKE AISCMG +I  
Sbjct: 540  LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599

Query: 592  FGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651
             GDNLG++LP  L + ++R+ NEITRLT VKA  +IA SPL IDL  VL   +  L +FL
Sbjct: 600  LGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 659

Query: 652  RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTL 711
            RK  RAL+  TL  ++ L+  Y D + A+  + ++ EL  LIS+SD+H++ +A+    TL
Sbjct: 660  RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 719

Query: 712  MADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFD-TLLD 770
                +  P+    +   +L + + L++S LLQG AL A+  FF ALV +   +     L 
Sbjct: 720  A---KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776

Query: 771  SLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAK 830
             +L+    S  +    KQ+ YSIA+CVA L  A   +  +   + + D+    S    + 
Sbjct: 777  RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRS--TDSI 834

Query: 831  QHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPF 890
            + LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF
Sbjct: 835  RLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPF 894

Query: 891  ILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVV 950
            +L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVV
Sbjct: 895  VLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVV 951

Query: 951  AECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSF 1010
            AECLGK+ LI+P  L+P LK    S +++ R++VV A+K++I + P+ ID ++   I  F
Sbjct: 952  AECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF 1011

Query: 1011 LMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPF 1070
            L  ++D D +VRR A++  ++ AHNKP+LI+ LL  +LP LY++T V+KELIR V++GPF
Sbjct: 1012 LKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPF 1071

Query: 1071 KHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKL 1130
            KHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L
Sbjct: 1072 KHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRL 1130

Query: 1131 ADKCPSAVLADFLHLM 1146
            +  CPSAVL     L+
Sbjct: 1131 STLCPSAVLQRLDRLV 1146
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1167
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 99.94
2x19_B963 Importin-13; nuclear transport, protein transport; 99.94
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.93
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.91
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.88
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.88
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.86
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.85
2x1g_F971 Cadmus; transport protein, developmental protein, 99.83
2x19_B963 Importin-13; nuclear transport, protein transport; 99.81
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.81
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.77
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.71
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.71
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.7
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.68
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.67
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.66
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.65
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.65
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.64
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.64
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.61
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.61
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.6
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.6
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.59
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.59
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.59
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.57
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.54
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.51
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.51
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.48
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.48
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.47
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.47
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.45
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.44
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.37
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.37
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.37
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.33
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.31
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.27
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.16
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.12
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 99.1
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 99.09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.06
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.03
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.01
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.99
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.94
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.94
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.93
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.91
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.91
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.91
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.84
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.81
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.79
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.78
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.77
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.76
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.76
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.74
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.74
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.73
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.72
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.64
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.63
3nmz_A458 APC variant protein; protein-protein complex, arma 98.55
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.5
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.5
3nmz_A458 APC variant protein; protein-protein complex, arma 98.48
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.44
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.4
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.3
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.26
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.13
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.12
3grl_A651 General vesicular transport factor P115; vesicle t 98.01
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.99
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.98
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.93
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.9
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.89
3grl_A651 General vesicular transport factor P115; vesicle t 97.76
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.54
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.5
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.46
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.4
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.28
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.18
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 97.05
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.94
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.85
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.61
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.34
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 96.12
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.07
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 95.74
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 95.08
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.05
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 94.86
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 94.79
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.34
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 94.26
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.22
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 93.94
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 92.65
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 91.47
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 90.42
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 88.31
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 86.37
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 85.95
3tj1_A649 RNA polymerase I-specific transcription initiatio 84.75
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 81.23
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
Probab=100.00  E-value=3.1e-108  Score=1099.35  Aligned_cols=1143  Identities=44%  Similarity=0.736  Sum_probs=988.2

Q ss_pred             Cch--HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062            1 MAN--LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS   78 (1167)
Q Consensus         1 ~~~--~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~   78 (1167)
                      |++  +++..+++++.++|+|+|+||++||.+.++.+.++.++...+++++.+++.|.|++++||++|++||+.++..++
T Consensus         1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~   80 (1230)
T 1u6g_C            1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK   80 (1230)
T ss_dssp             ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred             CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence            665  999999999999999999999999999999887788888899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062           79 EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC  154 (1167)
Q Consensus        79 ~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~  154 (1167)
                      +..+..+++.|+..+.++++.+|..++.+|+.++..++..    .....+.+.++|.|+..+.+. .++.+|..++++|+
T Consensus        81 ~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           81 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMA  159 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence            9889999999999998888889999999999999988763    134567889999999999752 26899999999999


Q ss_pred             HHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062          155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV  234 (1167)
Q Consensus       155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l  234 (1167)
                      ++++.+|..+.++.+.+++.+++.+.++++.+|++|+.|++.++...+++.++.+++.++..+.+..+ ...|..+++++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l  238 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCI  238 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999988888889999988877643 35788899999


Q ss_pred             HHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCC
Q 001062          235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM  314 (1167)
Q Consensus       235 ~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~  314 (1167)
                      +.+++..|..|.||++.++|.+++.+++   +++++|+.++++++.|+..+++++.||++.+++.+++.+++||+|..++
T Consensus       239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~  315 (1230)
T 1u6g_C          239 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD  315 (1230)
T ss_dssp             HHHHHHSSGGGTTSCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcc
Confidence            9999999999999999999999999987   7889999999999999999999999999999999999999999873321


Q ss_pred             CCCC-ccccc--ccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHH
Q 001062          315 EEDS-DDEAY--EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVF  391 (1167)
Q Consensus       315 ~~d~-~~~~~--~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~  391 (1167)
                      +++. +.+++  +++++++.+++|++++|.+|+||++|+.+++.++...|+.+.++++.++|.++.+++|++++||..++
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~  395 (1230)
T 1u6g_C          316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVF  395 (1230)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence            1111 11111  11112222346777788999999999999999999888888899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCccCC----CCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhh
Q 001062          392 NTFIELVRQTGNVTKGQIDN----NELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS  467 (1167)
Q Consensus       392 ~~l~~l~~~~~~~~~~~~~~----~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~  467 (1167)
                      .++..+++..+....|..+.    ...+|...+..++|.+++.+.+.++++++++|++++.+++.++..+++.+.+|++.
T Consensus       396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~  475 (1230)
T 1u6g_C          396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV  475 (1230)
T ss_dssp             HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH
T ss_pred             HHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH
Confidence            99999998765321110000    00134456778899999999999999999999999999999999998888899999


Q ss_pred             hHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc
Q 001062          468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE  547 (1167)
Q Consensus       468 l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~  547 (1167)
                      ++|.+...|.|+.....++.+++..+..+++.++++.+.+|++.++|.+..+++|++++++.+|+.+++.+++.+++...
T Consensus       476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~  555 (1230)
T 1u6g_C          476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ  555 (1230)
T ss_dssp             HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999998754457899999999999998888889999999999999999999999999999999999998876210


Q ss_pred             ccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHH
Q 001062          548 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVI  627 (1167)
Q Consensus       548 ~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i  627 (1167)
                      ..+..+.||++.+++.++..+...+.++++|+.|+.++|.++...|+.+.++++.+++.|.+.+.++.+|..++++++.+
T Consensus       556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i  635 (1230)
T 1u6g_C          556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLI  635 (1230)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            01336889999999999999976688899999999999999999999998999999999999999999999999999999


Q ss_pred             hcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001062          628 AASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL  707 (1167)
Q Consensus       628 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~  707 (1167)
                      +.+..+.++.+|++.+++.|...++++++.+|.+++.|++.++...+..+..+.+.+++..+.++++++|.+....++++
T Consensus       636 ~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~  715 (1230)
T 1u6g_C          636 AGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF  715 (1230)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHH
T ss_pred             HhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence            97766667899999999999999999999999999999999999998777777888888888888888999999999999


Q ss_pred             HHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccC--CChHHHHHHHhhcCCCCCCCcch
Q 001062          708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN--TSFDTLLDSLLSSAKPSPQSGGV  785 (1167)
Q Consensus       708 l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~--~~~~~ll~~L~~~~~~~~~~~~~  785 (1167)
                      |+.+++.   .|.....+.+.++|.++.+++++.+++.++.++..+++.++..++  ..++.+++.++..+... .....
T Consensus       716 L~~l~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~-~~~~~  791 (1230)
T 1u6g_C          716 LTTLAKV---YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ-STALT  791 (1230)
T ss_dssp             HHHHTTS---CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----C
T ss_pred             HHHHHHh---CchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCC-CCccc
Confidence            9999987   666555678899999999999988889888899999999987663  47889999998765321 11112


Q ss_pred             hhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCh
Q 001062          786 AKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF  865 (1167)
Q Consensus       786 ~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~  865 (1167)
                      ++++...+++|+|.++...++ ....+++.|...+++. ......+.+++.++|++|...++..++++++.++++|.+++
T Consensus       792 ~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~  869 (1230)
T 1u6g_C          792 HKQSYYSIAKCVAALTRACPK-EGPAVVGQFIQDVKNS-RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPS  869 (1230)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCC-CSHHHHTTTTTTTTTT-TCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSC
T ss_pred             cchhhHHHHHHHHHHHHhcch-hhHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhCCCC
Confidence            356778899999998776665 3346777777777642 24567788999999999988777766789999999999999


Q ss_pred             hhHHHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccc
Q 001062          866 EEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEG  945 (1167)
Q Consensus       866 e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~  945 (1167)
                      ++||.+|+.|||.++.+++..++|.+++.+.++++.|+.+++||+|++.+.+..   .+.|+..+||+.|++.+++.+++
T Consensus       870 ~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~---~~~~~~~~i~~~L~~~~~~~~~~  946 (1230)
T 1u6g_C          870 EEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV---GLKPYVENIWALLLKHCECAEEG  946 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCST---TTHHHHHHHHHHHTTCCCCSSTT
T ss_pred             HHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChh---hHHhhHHHHHHHHHHHhcCcchh
Confidence            999999999999999999999999999999888888999999999999876543   78899999999999999888889


Q ss_pred             hhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHH
Q 001062          946 VRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAA 1025 (1167)
Q Consensus       946 vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a 1025 (1167)
                      +|+.+++|||+++..+++.++|.|.+.+++.++.+|.++++++++++.+.+..+++++.++++.|+.+|+|+|.+||++|
T Consensus       947 ~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a 1026 (1230)
T 1u6g_C          947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVA 1026 (1230)
T ss_dssp             HHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHH
T ss_pred             hHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999999999999999999989999999999999999988877888999999999999999999999999


Q ss_pred             HHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccch
Q 001062         1026 VLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFI 1105 (1167)
Q Consensus      1026 ~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~ 1105 (1167)
                      +.+|++++|++|+++.++++.++|.||+++.++++++|+|+||||||++|||+++||.||+|||+|++.|.+++++.+|+
T Consensus      1027 ~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~ 1106 (1230)
T 1u6g_C         1027 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL 1106 (1230)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred             HHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCcchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhccccc
Q 001062         1106 VPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIG 1158 (1167)
Q Consensus      1106 ~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 1158 (1167)
                       ++++.|++|++|||++||.+|.+|++.+|..|.+++|+++++++++++.=..
T Consensus      1107 -~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1158 (1230)
T 1u6g_C         1107 -NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVK 1158 (1230)
T ss_dssp             -HHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCC
T ss_pred             -HHHHcccCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccc
Confidence             8999999999999999999999999999999999999999999999875443
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1167
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.0
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-07
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 7e-13
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-12
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 9e-11
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-09
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 4e-12
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 5e-08
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 9e-07
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.001
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 4e-12
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 9e-11
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-05
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 8e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.002
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.004
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 6e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 8e-04
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 7e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 7e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-04
d2vgla_ 584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-04
d2vgla_ 584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-04
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.001
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  689 bits (1779), Expect = 0.0
 Identities = 504/1150 (43%), Positives = 750/1150 (65%), Gaps = 24/1150 (2%)

Query: 2    ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
            A+  ++ +LEK+T  DKDFR+MAT+DL+ EL K+S K D D E K+  ++++ L+D  G+
Sbjct: 1    ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 60

Query: 62   VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121
            V  LAVKCL PLV KV E +V  + D LC  +L+ K+Q RDI+SI LKT+I E+  +S  
Sbjct: 61   VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 120

Query: 122  QSIHTSLTPQLTKGIT---LKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
             ++  ++  ++T  +T    K  +  ++ E LDI+ D+L + G L+ N H  +L+ LLPQ
Sbjct: 121  SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L++ + +VRK+++  +  L  S  + +       ++  L          RT IQ + A+S
Sbjct: 181  LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN-DSMSTTRTYIQCIAAIS 239

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            R  G+R G +L   +P+++ +C   + +D+ELREY +QA ESF+ RCP+++  +   I++
Sbjct: 240  RQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN 296

Query: 299  LTLEYLSYDPNFTDNMEEDSD---DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355
            + L+YL+YDPN+  + E++ +   D    ++++  S +EY+DD+D SWKVRRAAAKCL A
Sbjct: 297  ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 356

Query: 356  LIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415
            ++ +R EML + Y+   P LI RFKEREENVK DVF+ ++ L++QT  V     D + + 
Sbjct: 357  VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 416

Query: 416  ----PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPG 471
                P  +L+ +V  IVK++++Q++EKS+KT+   F++L ELV VLP  L  HI  L+PG
Sbjct: 417  QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 476

Query: 472  IEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEA 531
            I  SLNDKSS+SNLKI+AL+   ++L +HSP VFHP+++AL  PV+A VG+ +YK+T+EA
Sbjct: 477  IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 536

Query: 532  LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591
            L V  +LV+V+RP  +   FD  PY++ ++   + RL   D DQEVKE AISCMG +I  
Sbjct: 537  LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 596

Query: 592  FGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651
             GDNLG++LP  L + ++R+ NEITRLT VKA  +IA SPL IDL  VL   +  L +FL
Sbjct: 597  LGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 656

Query: 652  RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTL 711
            RK  RAL+  TL  ++ L+  Y D + A+  + ++ EL  LIS+SD+H++ +A+    TL
Sbjct: 657  RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 716

Query: 712  MADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTL-LD 770
                +  P+    +   +L + + L++S LLQG AL A+  FF ALV +   +   + L 
Sbjct: 717  A---KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 773

Query: 771  SLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAK 830
             +L+    S  +    KQ+ YSIA+CVA L  A   +  +   + + D+    S+   + 
Sbjct: 774  RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SI 831

Query: 831  QHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPF 890
            + LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF
Sbjct: 832  RLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPF 891

Query: 891  ILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVV 950
            +L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVV
Sbjct: 892  VLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVV 948

Query: 951  AECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSF 1010
            AECLGK+ LI+P  L+P LK    S +++ R++VV A+K++I + P+ ID ++   I  F
Sbjct: 949  AECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF 1008

Query: 1011 LMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPF 1070
            L  ++D D +VRR A++  ++ AHNKP+LI+ LL  +LP LY++T V+KELIR V++GPF
Sbjct: 1009 LKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPF 1068

Query: 1071 KHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKL 1130
            KHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+      GL+DHYD+KM   L+L +L
Sbjct: 1069 KHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED-GLKDHYDIKMLTFLMLVRL 1127

Query: 1131 ADKCPSAVLA 1140
            +  CPSAVL 
Sbjct: 1128 STLCPSAVLQ 1137
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1167
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.97
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.96
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.71
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.68
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.63
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.5
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.37
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.25
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.2
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.1
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.91
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.84
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.72
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.66
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.47
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.17
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.98
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.44
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.13
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.76
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 94.97
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 94.95
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 94.49
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.13
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 93.0
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.25
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 88.37
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 87.15
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-115  Score=1167.68  Aligned_cols=1139  Identities=45%  Similarity=0.740  Sum_probs=996.9

Q ss_pred             chHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh
Q 001062            2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR   81 (1167)
Q Consensus         2 ~~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~   81 (1167)
                      ++|+|+++|+||+|+|||+||||++||.+.++++.+++|+...+++++.++++|+|+|++||++|++||++++.+++++.
T Consensus         1 ~~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~   80 (1207)
T d1u6gc_           1 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ   80 (1207)
T ss_dssp             CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CchhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062           82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL  157 (1167)
Q Consensus        82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~  157 (1167)
                      +..+++.|+..+.+++.+.|++++++|+.++.+++..    .+...+++.+++.+...+...+ ++.++.++++++++++
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHH
Confidence            9999999999999988899999999999999998764    4556778888888888776654 6889999999999999


Q ss_pred             HHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001062          158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL  237 (1167)
Q Consensus       158 ~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l  237 (1167)
                      .++|..+.++++.+++.+++.++++++.||++|+.|++.++.+.++..+..+++.++..+..... ...|+.++++++.+
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAI  238 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHH
T ss_pred             HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888888865543 35678899999999


Q ss_pred             HHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCC
Q 001062          238 SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEED  317 (1167)
Q Consensus       238 ~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d  317 (1167)
                      ++..|.+|.||++.++|.+++.++.   +++++|+.++++++.++..||.++.||++++++.++++++||||+..+.+++
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~~---~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~  315 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE  315 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------
T ss_pred             HHHcchhhHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHH
Confidence            9999999999999999999999988   7899999999999999999999999999999999999999999986544332


Q ss_pred             Cc-cc--ccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHH
Q 001062          318 SD-DE--AYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTF  394 (1167)
Q Consensus       318 ~~-~~--~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l  394 (1167)
                      +. .+  +..++.+...++.|++++|.+|++|++|+++++.++.+.|+.+..+++.++|.++++++|++++||.+++.++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l  395 (1207)
T d1u6gc_         316 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAY  395 (1207)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             HHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            11 11  1122223344556778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCccC----CCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHH
Q 001062          395 IELVRQTGNVTKGQID----NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIP  470 (1167)
Q Consensus       395 ~~l~~~~~~~~~~~~~----~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~  470 (1167)
                      ..+++.......+...    ....+|...+.+++|.+++.+.+.+++++.++|+.++.++..++...++.+.+|+..+++
T Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~  475 (1207)
T d1u6gc_         396 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP  475 (1207)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred             HHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHH
Confidence            9999887653322221    123456667888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccC
Q 001062          471 GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLG  550 (1167)
Q Consensus       471 ~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~  550 (1167)
                      .+...+.++.....++.+++.++..+++.+.++.+.+++..+.+.+..++.+++++++.+|+.+++.++..+++......
T Consensus       476 ~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~  555 (1207)
T d1u6gc_         476 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS  555 (1207)
T ss_dssp             HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchh
Confidence            99999998766677899999999999999988899999999999999999999999999999999999998876543334


Q ss_pred             CCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 001062          551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS  630 (1167)
Q Consensus       551 ~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~  630 (1167)
                      .++.+++..+++.++..+.+.+.+.++|..|+.++|.++...|+.+.++++.+++.+.++++++.+|..++++++.++.+
T Consensus       556 ~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~  635 (1207)
T d1u6gc_         556 FDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS  635 (1207)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHh
Confidence            56788999999999999998889999999999999999999999998999999999999999999999999999999877


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHH
Q 001062          631 PLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT  710 (1167)
Q Consensus       631 ~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~  710 (1167)
                      ..+.++.+++..+++.+..+++++++.+|..++.++..++.+++..+.....+.++..+.++++++|.++++.++.+++.
T Consensus       636 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~  715 (1207)
T d1u6gc_         636 PLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT  715 (1207)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHH
Confidence            66677899999999999999999999999999999999999988878777788888889999999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhcc--CCChHHHHHHHhhcCCCCCCCcchhhh
Q 001062          711 LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSA--NTSFDTLLDSLLSSAKPSPQSGGVAKQ  788 (1167)
Q Consensus       711 l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~--~~~~~~ll~~L~~~~~~~~~~~~~~~~  788 (1167)
                      +.+.   .|.....+...+++.++..++++..++..+.++..++..++..+  ......+++.+....... .....+++
T Consensus       716 l~~~---~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~  791 (1207)
T d1u6gc_         716 LAKV---YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ-STALTHKQ  791 (1207)
T ss_dssp             HTTS---CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----CCHH
T ss_pred             HHhh---cchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc-cchhhHHH
Confidence            9988   77777778899999999999999888888888888888877644  335566777776655221 22223467


Q ss_pred             hhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhH
Q 001062          789 AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEI  868 (1167)
Q Consensus       789 a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~v  868 (1167)
                      +...+++|++.+....+. .....+..|+....+. ......+.+++.++|++|++.+..+.+++.+.+++.|++++++|
T Consensus       792 ~~~~~~~~i~~l~~~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~v  869 (1207)
T d1u6gc_         792 SYYSIAKCVAALTRACPK-EGPAVVGQFIQDVKNS-RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV  869 (1207)
T ss_dssp             HHHHHHHHHHHHHHHSCC-CSHHHHTTTTTTTTTT-TCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCCCCHHH
Confidence            778899999988665443 4455666666555442 34567788999999999999988877889999999999999999


Q ss_pred             HHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhh
Q 001062          869 KSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRN  948 (1167)
Q Consensus       869 r~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~  948 (1167)
                      |.+|+.|||.++.+++..++|.+++.+.++++.+|.++++++|++.+.+..   .+.++.+.+|+.|+..+++.++++|+
T Consensus       870 r~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~---~~~~~~~~i~~~L~~~~~~~~~~vr~  946 (1207)
T d1u6gc_         870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV---GLKPYVENIWALLLKHCECAEEGTRN  946 (1207)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCST---TTHHHHHHHHHHHTTCCCCSSTTHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchh---hhHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            999999999999999999999999999988899999999999999887765   67889999999999999988999999


Q ss_pred             HHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 001062          949 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1028 (1167)
Q Consensus       949 ~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~ 1028 (1167)
                      ++++|||+|+..+|+.++|.|.+.++++++.+|.+++.++++++.+....+++++.++++.|+..++|+|.+||++|+.+
T Consensus       947 ~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~ 1026 (1207)
T d1u6gc_         947 VVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVT 1026 (1207)
T ss_dssp             HHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888889999999999999999999999999999


Q ss_pred             HHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHH
Q 001062         1029 LSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPY 1108 (1167)
Q Consensus      1029 L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~ 1108 (1167)
                      |++++|++|+++.||++.++|.||++|.+|+++||+|+||||||++|||+|+||+||||||||+++|++++|+.+|+ ++
T Consensus      1027 l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~-~~ 1105 (1207)
T d1u6gc_        1027 FNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NH 1105 (1207)
T ss_dssp             HHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH-HH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HhcccCCcchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhcc
Q 001062         1109 LKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVG 1155 (1167)
Q Consensus      1109 ~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~ 1155 (1167)
                      ++.|++|++|||++|+.||.|++..+|..+.++||.++|+|+++++.
T Consensus      1106 ~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 1152 (1207)
T d1u6gc_        1106 VEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1152 (1207)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence            99999998899999999999999999999999999999999999873
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure