Citrus Sinensis ID: 001071

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160-----

MVRSASSPSSSPVTITVSSGGKGGGSRSMGLTSPVPRASFSNNPNSPLSGRAHRARSSSGGRYVSMSKDDATEEISSEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMKFQFP

ccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEccccccccccHHcccHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccEEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccccccEEEEcccccHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHHHccccHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHEEEEccccccccccccccc

ccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccEEEEEccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHcccEEEccccccEEEEEEccccccccccccccEEEEEcccccccccccccccccccHcHHHHHHcccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccEEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEcccccEEccHHHHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEcccHHEEEEEEccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHccHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHcccHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHccHHEEEccccccHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHEEHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHHHEcccccccccccccccc

mvrsasspssspvtitvssggkgggsrsmgltspvprasfsnnpnsplsgrahrarsssggryvsmskddateEISSEFVTytvhipptpdhqpmsasqtslnedtksevkpersfisdtiftggfnsvtrghvidcsfeqtepvksglicgmkgcdekVMQNKCDCGFKICRECYLecagngggrcpgckepykdasdgeiedeviseegdqalplpsmadfklDKRLSLVKSfkaqnhppdfdhtrwlfetkgtygygnalwpkdgygaesgsngfehpsdfgdrcrrplaRKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVfdqlpklcpvnrvtdltvlkdrfespnlcnpkgrsdlpgidvfvstadpekepplvtaNTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVpfcrkhnieprnpeaYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKqmemggstaepvkvpkatwmsdgshwpgtwtsgepdhsrgdhAGIIQAmlappnaepvfgveadgenlidstevdvrlPMLVYvsrekrpgydhnkkagaMNALVRTSAimsngpfilnldcDHYIYNSLALREGMCFMLdrggdricyvqfpqrfegidpndryanhntVFFDVAMRAldglqgpmyvgtgcifrrtalygfsppratehhgwfgsrkiklclrkpkvakkvddeialpingdhndddadieslllpkrfgnstslaasiPVAEYQGRLLQDlqgkgnqgrppgslavprepldaaTVAEAISVISCFyedktewgkrvGWIYGSVTEDVVTGYrmhnrgwrsvycvtkrdafrgtapinlTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYfnvgmypfTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWsgitlhdwwrneqfwviggtsahPAAVLQGLLKVIAGVDISFtltsksatpedgddQFAELYEVKWSflmvppitiMMVNVIAIAVGVArtmyspfpqwsrliggVFFSLWVLSHLypfakglmgrrgkvSTIVFLWSGLISLIISLLWVyisppsgrqdymkfqfp

mvrsasspssspvtitvssggkgggsrSMGLTSPVPRASfsnnpnsplsgrahrarsssggryvsmSKDDATEEISSEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISeegdqalplpSMADFKLDKRLSLVKSfkaqnhppdfdhtRWLFETKGTYGYGNALWPKDGYGAESGSNGFEHPSDFGDRCRRPLARKIgvstaiispyrLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTvlkdrfespnlcnpkgrsdlpgIDVFVStadpekepplvTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHnieprnpeayfeqkrnflknkirldfvrerrrvkreydefkvrinslpesirrrsdaYNAHEELrakkkqmemggstaepvkvpkatwMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGenlidstevdvrlPMLVYVsrekrpgydhnkkaGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRatehhgwfgsrkiklclRKPKVAkkvddeialpingdhnddDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFyedktewgkrvgwiygSVTEDVVTgyrmhnrgwrsvYCVTKRDAfrgtapinltdrLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTsksatpedgdDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMKFQFP

MVRsasspssspvtitvssggkgggsrsmgLTSPVPRASFSNNPNSPLsgrahrarsssggrYVSMSKDDATEEISSEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRlaalalflaWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGalltfealaetaSFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFlwsglisliisllwVYISPPSGRQDYMKFQFP

******************************************************************************FVTYTV*******************************FISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGC**************************************LSLVKSF******PDFDHTRWLFETKGTYGYGNALWPKDGYG*************FGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCN******LPGIDVFVST*******PLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRI*********************************************************************IIQAMLA***AEPVFGVEADGENLIDSTEVDVRLPMLVYVSREK***Y****KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPIN*********IESLLLPKRFG****LAASIPVAEYQG**************************DAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTS*********DQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYIS**************

****************************************************************************SEFVTYTVHIPPTPDH******************************TGGFNSV*************************GCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKD************************************************************YGY**ALW*****************************RKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFES**********DLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKR****NKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELR***K*****GSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRK****************GDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSAT****DDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQD*M*FQFP

*****************************GLTSPVPRASFSNNPN****************************EISSEFVTYTVHIPPTPD**********************RSFISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKK*********EPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQ**********SLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMKFQFP

***********PV*************************************RAHRARSSSGGRYVSMSKDDATEEISSEFVTYTVHIPPTPDHQP***************VKPERSFISDTIFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYK*************************************************DHTRWLFETKGTYGYGNALWPKDGYGAES*****EHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKK*******************WMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPN************NLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLR*********************DDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSG**********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1165	2.2.26 [Sep-21-2011]
Q9SRW9		1181	Cellulose synthase-like p	yes	no	0.997	0.983	0.804	0.0
Q2QNS6		1215	Cellulose synthase-like p	yes	no	0.984	0.944	0.686	0.0
Q9M9M4		1145	Cellulose synthase-like p	no	no	0.942	0.958	0.661	0.0
Q9LFL0		1145	Cellulose synthase-like p	no	no	0.946	0.963	0.639	0.0
A2YU42		1170	Cellulose synthase-like p	N/A	no	0.963	0.958	0.629	0.0
Q9LHZ7		1170	Cellulose synthase-like p	yes	no	0.957	0.953	0.627	0.0
Q8W3F9		1127	Cellulose synthase-like p	no	no	0.927	0.959	0.639	0.0
A2ZAK8		1127	Cellulose synthase-like p	N/A	no	0.927	0.959	0.639	0.0
Q9SZL9		1111	Cellulose synthase-like p	no	no	0.924	0.969	0.620	0.0
Q7EZW6		1147	Cellulose synthase-like p	no	no	0.937	0.952	0.607	0.0

>sp\|Q9SRW9\|CSLD5_ARATH Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1	Back alignment and function desciption

 Score = 1939 bits (5023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 952/1184 (80%), Positives = 1046/1184 (88%), Gaps = 22/1184 (1%)

Query: 1    MVRSASSPSSSPVTITVSSGGKGGGSRSMGLTSPVPRASFSNNPNSPLSGRAHRARS-SS 59
            MV+SA+S S SPVTITV+   KG G RS+GLTSP+PRAS   N NSPLS RA R  S SS
Sbjct: 1    MVKSAASQSPSPVTITVTPC-KGSGDRSLGLTSPIPRASVITNQNSPLSSRATRRTSISS 59

Query: 60   G--------GRYVSMSKDDATEEISSE--FVTYTVHIPPTPDHQPMSASQTSLNEDTKSE 109
            G        GRY SMS +D T E ++    ++YTVHIPPTPDHQ + ASQ S  ++    
Sbjct: 60   GNRRSNGDEGRYCSMSVEDLTAETTNSECVLSYTVHIPPTPDHQTVFASQESEEDEMLKG 119

Query: 110  VKPERSFISDTIFTGGFNSVTRGHVIDCSFEQTEP-VKSGLICGMKGCDEKVMQNKCDCG 168
               ++SF+S TIFTGGF SVTRGHVIDCS ++ +P  KSG IC +KGCDEKV+  +C+CG
Sbjct: 120  NSNQKSFLSGTIFTGGFKSVTRGHVIDCSMDRADPEKKSGQICWLKGCDEKVVHGRCECG 179

Query: 169  FKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKR 228
            F+ICR+CY +C  +GGG CPGCKEPY+D +D    +E   E+  +A PLP M + KLDKR
Sbjct: 180  FRICRDCYFDCITSGGGNCPGCKEPYRDINDDPETEEEDEED--EAKPLPQMGESKLDKR 237

Query: 229  LSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGSNG--FEHPSDFGD 286
            LS+VKSFKAQN   DFDHTRWLFETKGTYGYGNA+WPKDGYG  SG  G  +E P +FG+
Sbjct: 238  LSVVKSFKAQNQAGDFDHTRWLFETKGTYGYGNAVWPKDGYGIGSGGGGNGYETPPEFGE 297

Query: 287  RCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWF 346
            R +RPL RK+ VS AIISPYRL+I  RL AL LFL WR+RHPNREAMWLWGMS TCE WF
Sbjct: 298  RSKRPLTRKVSVSAAIISPYRLLIALRLVALGLFLTWRVRHPNREAMWLWGMSTTCELWF 357

Query: 347  AFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPL 406
            A SW+ DQLPKLCPVNR+TDL VLK+RFESPNL NPKGRSDLPGIDVFVSTADPEKEPPL
Sbjct: 358  ALSWLLDQLPKLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPL 417

Query: 407  VTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNP 466
            VTANTILSILAVDYPVEKLACYLSDDGGALLTFEALA+TASFA  WVPFCRKHNIEPRNP
Sbjct: 418  VTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNP 477

Query: 467  EAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAK 526
            EAYF QKRNFLKNK+RLDFVRERRRVKREYDEFKVRINSLPE+IRRRSDAYN HEELRAK
Sbjct: 478  EAYFGQKRNFLKNKVRLDFVRERRRVKREYDEFKVRINSLPEAIRRRSDAYNVHEELRAK 537

Query: 527  KKQMEM--GGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAE 584
            KKQMEM  G +  E V VPKATWMSDGSHWPGTW+SGE D+SRGDHAGIIQAMLAPPNAE
Sbjct: 538  KKQMEMMMGNNPQETVIVPKATWMSDGSHWPGTWSSGETDNSRGDHAGIIQAMLAPPNAE 597

Query: 585  PVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPF 644
            PV+G EAD ENLID+T+VD+RLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPF
Sbjct: 598  PVYGAEADAENLIDTTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPF 657

Query: 645  ILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVA 704
            ILNLDCDHYIYNS+ALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDV+
Sbjct: 658  ILNLDCDHYIYNSMALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVS 717

Query: 705  MRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDE 764
            MRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGW G RK+K+ LR+PK   K DDE
Sbjct: 718  MRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKVKISLRRPKAMMKKDDE 777

Query: 765  IALPINGDHND---DDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRP 821
            ++LPING++N+   DD DIESLLLPKRFGNS S  ASIPVAEYQGRL+QDLQGKG   RP
Sbjct: 778  VSLPINGEYNEEENDDGDIESLLLPKRFGNSNSFVASIPVAEYQGRLIQDLQGKGKNSRP 837

Query: 822  PGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWR 881
             GSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWR
Sbjct: 838  AGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWR 897

Query: 882  SVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFN 941
            S+YCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNA+ A+RRMKFLQRVAYFN
Sbjct: 898  SIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIFATRRMKFLQRVAYFN 957

Query: 942  VGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGI 1001
            VGMYPFTS+FL+VYCILPA+SLFSGQFIVQSL I+FLIYLL+IT+TLCML+LLEIKWSGI
Sbjct: 958  VGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGI 1017

Query: 1002 TLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYE 1061
            TLH+WWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKS+ PEDGDD+FA+LY 
Sbjct: 1018 TLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYV 1077

Query: 1062 VKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGL 1121
            VKWSFLMVPP+TIMMVN+IAIAVG+ART+YSPFPQWS+L+GGVFFS WVL HLYPFAKGL
Sbjct: 1078 VKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGL 1137

Query: 1122 MGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMKFQFP 1165
            MGRRG+V TIVF+WSGL+S+I+SLLWVYI+PPSG+QDYM+FQFP
Sbjct: 1138 MGRRGRVPTIVFVWSGLLSIIVSLLWVYINPPSGKQDYMQFQFP 1181

Involved in stem and root growth. Possesses xylan and homogalacturonan synthase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q2QNS6\|CSLD4_ORYSJ Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9M4\|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LFL0\|CSLD2_ARATH Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=1 SV=1	Back alignment and function description

>sp\|A2YU42\|CSLD2_ORYSI Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1	Back alignment and function description

>sp\|Q9LHZ7\|CSLD2_ORYSJ Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1	Back alignment and function description

>sp\|Q8W3F9\|CSLD1_ORYSJ Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1	Back alignment and function description

>sp\|A2ZAK8\|CSLD1_ORYSI Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2	Back alignment and function description

>sp\|Q9SZL9\|CSLD4_ARATH Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1	Back alignment and function description

>sp\|Q7EZW6\|CSLD3_ORYSJ Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1165
255564292		1162	Cellulose synthase A catalytic subunit 3	0.992	0.994	0.861	0.0
449469052		1169	PREDICTED: cellulose synthase-like prote	0.993	0.989	0.837	0.0
312142158		1175	celullose synthase-like D protein [Gossy	0.997	0.988	0.856	0.0
429326492		1166	cellulose synthase-like protein [Populus	0.993	0.992	0.854	0.0
225437481		1171	PREDICTED: cellulose synthase-like prote	0.992	0.987	0.850	0.0
224131050		1138	predicted protein [Populus trichocarpa]	0.969	0.992	0.863	0.0
224064474		1165	predicted protein [Populus trichocarpa]	0.984	0.984	0.852	0.0
356505610		1151	PREDICTED: cellulose synthase-like prote	0.976	0.988	0.828	0.0
15217853		1181	1,4-beta-D-xylan synthase [Arabidopsis t	0.997	0.983	0.804	0.0
297848480		1184	hypothetical protein ARALYDRAFT_887416 [	0.996	0.980	0.803	0.0

>gi\|255564292\|ref\|XP_002523143.1\| Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis] gi\|223537705\|gb\|EEF39328.1\| Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2079 bits (5387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1009/1171 (86%), Positives = 1083/1171 (92%), Gaps = 15/1171 (1%)

Query: 1    MVRSASSPSSSPVTITVSSGGKGGGSRSMGLTSPVPRASFSNNPNSPLSGRAHRARSSSG 60
            MV++A+SPSSSPVTITVSSGGK  GSRSMGLTSPVPRAS SNNPNSPL+    + R+SSG
Sbjct: 1    MVKTANSPSSSPVTITVSSGGKERGSRSMGLTSPVPRASISNNPNSPLTN--SKNRTSSG 58

Query: 61   GRYVSMSKDDATEEISSEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDT 120
            GRY SMS+DD TEEI+S+FVTYTVHIPPTPDHQPMS SQ+SL  D K++ KP+RSFIS T
Sbjct: 59   GRYCSMSRDDTTEEINSDFVTYTVHIPPTPDHQPMSVSQSSL--DIKNDGKPDRSFISGT 116

Query: 121  IFTGGFNSVTRGHVIDCSFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECA 180
            IFTGGFNSVTRGHV+DCS E T+ +KSGL+CGMKGCDEK ++ KC+CGFKICR+CYL+C 
Sbjct: 117  IFTGGFNSVTRGHVMDCSMEMTKSLKSGLVCGMKGCDEKAIRGKCECGFKICRDCYLDCV 176

Query: 181  G-NGGGRCPGCKEPYKDASDGEIEDEVISEEGD-----QALPLPSMADFKLDKRLSLVKS 234
            G N  G CPGCKEPYKD  D + +DE   +E       QALPLP     KLDKRLSLVKS
Sbjct: 177  GANAVGHCPGCKEPYKDVDDEDFDDEEDDDEAKSEEEDQALPLP-----KLDKRLSLVKS 231

Query: 235  FKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGSNGFEHPSDFGDRCRRPLAR 294
             KA NHPP+FDHTRWLFETKGTYGYGNA+WPKDGYG  SG+N FEHP DFG+R RRPL R
Sbjct: 232  IKAMNHPPEFDHTRWLFETKGTYGYGNAVWPKDGYGGGSGANEFEHPPDFGERSRRPLTR 291

Query: 295  KIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQ 354
            K+GVS AI+SPYRL+I  RLAAL LFL WRIRHPNREAMWLWGMSITCE WFA SW+ DQ
Sbjct: 292  KVGVSAAILSPYRLLIAMRLAALGLFLTWRIRHPNREAMWLWGMSITCEVWFALSWLLDQ 351

Query: 355  LPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILS 414
            LPKLCPVNRVTDL+VLK RFESPNL NPKGRSDLPGIDVFVSTADPEKEPPLVTANTILS
Sbjct: 352  LPKLCPVNRVTDLSVLKQRFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILS 411

Query: 415  ILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKR 474
            ILAVDYPVEK+ACYLSDDGG+LLTFEALAETASFAR W+PFCRKHNIEPRNPEAYF QKR
Sbjct: 412  ILAVDYPVEKVACYLSDDGGSLLTFEALAETASFARTWIPFCRKHNIEPRNPEAYFGQKR 471

Query: 475  NFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGG 534
            +FLKNK+RLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQ+EMGG
Sbjct: 472  DFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQVEMGG 531

Query: 535  STAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGE 594
            S +EP+KVPKATWMSDGSHWPGTWTSGE DHSRGDHAGIIQAMLAPPN+EP FG EAD E
Sbjct: 532  SLSEPLKVPKATWMSDGSHWPGTWTSGESDHSRGDHAGIIQAMLAPPNSEPAFGAEADAE 591

Query: 595  NLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI 654
            NLID+ EVD+RLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI
Sbjct: 592  NLIDTMEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI 651

Query: 655  YNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGP 714
            YNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDP+DRYANHNTVFFDV+MRALDGLQGP
Sbjct: 652  YNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGP 711

Query: 715  MYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHN 774
            MYVGTGCIFRRTALYGFSPPR TEHHGWFG +KIKL LRKPK  KK +DEIALPIN D N
Sbjct: 712  MYVGTGCIFRRTALYGFSPPRTTEHHGWFGRKKIKLFLRKPKTTKKQEDEIALPINCDQN 771

Query: 775  DDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDA 834
            DDDADIESLLLPKRFGNSTSLAASIP+AEYQGRLLQD+QG+GN GRP GSLAVPREPLDA
Sbjct: 772  DDDADIESLLLPKRFGNSTSLAASIPIAEYQGRLLQDVQGRGNHGRPAGSLAVPREPLDA 831

Query: 835  ATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRG 894
            ATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRG
Sbjct: 832  ATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRG 891

Query: 895  TAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLV 954
            TAPINLTDRLHQVLRWATGSVEIFFSRNNAL AS RMKFLQRVAYFNVGMYPFTSMFL+V
Sbjct: 892  TAPINLTDRLHQVLRWATGSVEIFFSRNNALFASPRMKFLQRVAYFNVGMYPFTSMFLIV 951

Query: 955  YCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWV 1014
            YCILPAVSLFSGQFIVQSLS++FL++LLAIT+TLC+LALLEIKWSGITLHDWWRNEQFW+
Sbjct: 952  YCILPAVSLFSGQFIVQSLSVTFLVFLLAITMTLCLLALLEIKWSGITLHDWWRNEQFWL 1011

Query: 1015 IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITI 1074
            IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSA PEDGDD+FAELY VKWSFLM+PPITI
Sbjct: 1012 IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSAMPEDGDDEFAELYVVKWSFLMIPPITI 1071

Query: 1075 MMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFL 1134
            MM+N+IAIAVGVART+YS +PQWS+L+GGVFFS WVLSHLYPFAKGLMGRRG+V TIV++
Sbjct: 1072 MMLNMIAIAVGVARTVYSTYPQWSKLLGGVFFSFWVLSHLYPFAKGLMGRRGRVPTIVYV 1131

Query: 1135 WSGLISLIISLLWVYISPPSGRQDYMKFQFP 1165
            WSGL+S+IISLLWVYISPPSG+QDYMKFQFP
Sbjct: 1132 WSGLLSIIISLLWVYISPPSGKQDYMKFQFP 1162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi\|449469052\|ref\|XP_004152235.1\| PREDICTED: cellulose synthase-like protein D5-like [Cucumis sativus] gi\|449531183\|ref\|XP_004172567.1\| PREDICTED: cellulose synthase-like protein D5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|312142158\|gb\|ADQ28096.1\| celullose synthase-like D protein [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|429326492\|gb\|AFZ78586.1\| cellulose synthase-like protein [Populus tomentosa]	Back alignment and taxonomy information

>gi\|225437481\|ref\|XP_002274010.1\| PREDICTED: cellulose synthase-like protein D5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224131050\|ref\|XP_002320989.1\| predicted protein [Populus trichocarpa] gi\|222861762\|gb\|EEE99304.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224064474\|ref\|XP_002301494.1\| predicted protein [Populus trichocarpa] gi\|222843220\|gb\|EEE80767.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356505610\|ref\|XP_003521583.1\| PREDICTED: cellulose synthase-like protein D5-like [Glycine max]	Back alignment and taxonomy information

>gi\|15217853\|ref\|NP_171773.1\| 1,4-beta-D-xylan synthase [Arabidopsis thaliana] gi\|75207418\|sp\|Q9SRW9.1\|CSLD5_ARATH RecName: Full=Cellulose synthase-like protein D5; Short=AtCslD5 gi\|6056428\|gb\|AAF02892.1\|AC009525_26 Very similar to cellulose synthase catalytic subunit [Arabidopsis thaliana] gi\|332189343\|gb\|AEE27464.1\| 1,4-beta-D-xylan synthase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297848480\|ref\|XP_002892121.1\| hypothetical protein ARALYDRAFT_887416 [Arabidopsis lyrata subsp. lyrata] gi\|297337963\|gb\|EFH68380.1\| hypothetical protein ARALYDRAFT_887416 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1165
TAIR\|locus:2024745		1181	CSLD5 "AT1G02730" [Arabidopsis	0.944	0.931	0.798	0.0
TAIR\|locus:2097700		1145	CSLD3 "AT3G03050" [Arabidopsis	0.927	0.943	0.645	0.0
TAIR\|locus:2148171		1145	CSLD2 "AT5G16910" [Arabidopsis	0.923	0.939	0.630	0.0
TAIR\|locus:2046505		1036	CSLD1 "AT2G33100" [Arabidopsis	0.793	0.891	0.641	0.0
TAIR\|locus:2121080		1111	CSLD4 "AT4G38190" [Arabidopsis	0.585	0.613	0.571	0.0
TAIR\|locus:2031740		979	CSLD6 "AT1G32180" [Arabidopsis	0.713	0.848	0.644	1.2e-305
UNIPROTKB\|Q2QNS6		1215	CSLD4 "Cellulose synthase-like	0.585	0.561	0.715	6.6e-305
TAIR\|locus:2156789		1065	CEV1 "CONSTITUTIVE EXPRESSION	0.486	0.532	0.501	3.2e-224
TAIR\|locus:2178935		1026	IRX3 "IRREGULAR XYLEM 3" [Arab	0.259	0.294	0.527	1.8e-221
TAIR\|locus:2176090		1084	CESA6 "cellulose synthase 6" [	0.465	0.5	0.480	2.9e-221

TAIR\|locus:2024745 CSLD5 "AT1G02730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4798 (1694.0 bits), Expect = 0., P = 0.
 Identities = 890/1114 (79%), Positives = 972/1114 (87%)

Query:    63 YVSMSKDDATEEIS-SEFV-TYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDT 120
             Y SMS +D T E + SE V +YTVHIPPTPDHQ + ASQ S  ++       ++SF+S T
Sbjct:    71 YCSMSVEDLTAETTNSECVLSYTVHIPPTPDHQTVFASQESEEDEMLKGNSNQKSFLSGT 130

Query:   121 IFTGGFNSVTRGHVIDCSFEQTEPVK-SGLICGMKGCDEKVMQNKCDCGFKICRECYLEC 179
             IFTGGF SVTRGHVIDCS ++ +P K SG IC +KGCDEKV+  +C+CGF+ICR+CY +C
Sbjct:   131 IFTGGFKSVTRGHVIDCSMDRADPEKKSGQICWLKGCDEKVVHGRCECGFRICRDCYFDC 190

Query:   180 AGNGGGRCPGCKEPYKDASDG-EIEDEVISEEGDQALPLPSMADFKLDKRLSLVKSFKAQ 238
               +GGG CPGCKEPY+D +D  E E+E   +E D+A PLP M + KLDKRLS+VKSFKAQ
Sbjct:   191 ITSGGGNCPGCKEPYRDINDDPETEEE---DEEDEAKPLPQMGESKLDKRLSVVKSFKAQ 247

Query:   239 NHPPDFDHTRWLFETKGTYGYGNALWPKDGYGAESGS--NGFEHPSDFGDRCRRPLARKI 296
             N   DFDHTRWLFETKGTYGYGNA+WPKDGYG  SG   NG+E P +FG+R +RPL RK+
Sbjct:   248 NQAGDFDHTRWLFETKGTYGYGNAVWPKDGYGIGSGGGGNGYETPPEFGERSKRPLTRKV 307

Query:   297 GVSTAIISPYRLIIVTRXXXXXXXXXWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLP 356
              VS AIISPYRL+I  R         WR+RHPNREAMWLWGMS TCE WFA SW+ DQLP
Sbjct:   308 SVSAAIISPYRLLIALRLVALGLFLTWRVRHPNREAMWLWGMSTTCELWFALSWLLDQLP 367

Query:   357 KLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSIL 416
             KLCPVNR+TDL VLK+RFESPNL NPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSIL
Sbjct:   368 KLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSIL 427

Query:   417 AVDYPVEKLACYLSDDGGXXXXXXXXXXXXSFARIWVPFCRKHNIEPRNPEAYFEQKRNF 476
             AVDYPVEKLACYLSDDGG            SFA  WVPFCRKHNIEPRNPEAYF QKRNF
Sbjct:   428 AVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYFGQKRNF 487

Query:   477 LKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEM--GG 534
             LKNK+RLDFVRERRRVKREYDEFKVRINSLPE+IRRRSDAYN HEELRAKKKQMEM  G 
Sbjct:   488 LKNKVRLDFVRERRRVKREYDEFKVRINSLPEAIRRRSDAYNVHEELRAKKKQMEMMMGN 547

Query:   535 STAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGE 594
             +  E V VPKATWMSDGSHWPGTW+SGE D+SRGDHAGIIQAMLAPPNAEPV+G EAD E
Sbjct:   548 NPQETVIVPKATWMSDGSHWPGTWSSGETDNSRGDHAGIIQAMLAPPNAEPVYGAEADAE 607

Query:   595 NLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI 654
             NLID+T+VD+RLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI
Sbjct:   608 NLIDTTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYI 667

Query:   655 YNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGP 714
             YNS+ALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDV+MRALDGLQGP
Sbjct:   668 YNSMALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVSMRALDGLQGP 727

Query:   715 MYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHN 774
             MYVGTGCIFRRTALYGFSPPRATEHHGW G RK+K+ LR+PK   K DDE++LPING++N
Sbjct:   728 MYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKVKISLRRPKAMMKKDDEVSLPINGEYN 787

Query:   775 D---DDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREP 831
             +   DD DIESLLLPKRFGNS S  ASIPVAEYQGRL+QDLQGKG   RP GSLAVPREP
Sbjct:   788 EEENDDGDIESLLLPKRFGNSNSFVASIPVAEYQGRLIQDLQGKGKNSRPAGSLAVPREP 847

Query:   832 LDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDA 891
             LDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRS+YCVTKRDA
Sbjct:   848 LDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDA 907

Query:   892 FRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMF 951
             FRGTAPINLTDRLHQVLRWATGSVEIFFSRNNA+ A+RRMKFLQRVAYFNVGMYPFTS+F
Sbjct:   908 FRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTSLF 967

Query:   952 LLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQ 1011
             L+VYCILPA+SLFSGQFIVQSL I+FLIYLL+IT+TLCML+LLEIKWSGITLH+WWRNEQ
Sbjct:   968 LIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQ 1027

Query:  1012 FWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPP 1071
             FWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKS+ PEDGDD+FA+LY VKWSFLMVPP
Sbjct:  1028 FWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPP 1087

Query:  1072 ITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTI 1131
             +TIMMVN+IAIAVG+ART+YSPFPQWS+L+GGVFFS WVL HLYPFAKGLMGRRG+V TI
Sbjct:  1088 LTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTI 1147

Query:  1132 VFXXXXXXXXXXXXXXVYISPPSGRQDYMKFQFP 1165
             VF              VYI+PPSG+QDYM+FQFP
Sbjct:  1148 VFVWSGLLSIIVSLLWVYINPPSGKQDYMQFQFP 1181

GO:0000271 "polysaccharide biosynthetic process" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030244 "cellulose biosynthetic process" evidence=IEA

GO:0042546 "cell wall biogenesis" evidence=NAS

GO:0046527 "glucosyltransferase activity" evidence=NAS

GO:0048367 "shoot system development" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0051753 "mannan synthase activity" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

TAIR\|locus:2097700 CSLD3 "AT3G03050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148171 CSLD2 "AT5G16910" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2046505 CSLD1 "AT2G33100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121080 CSLD4 "AT4G38190" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031740 CSLD6 "AT1G32180" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2QNS6 CSLD4 "Cellulose synthase-like protein D4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHZ7	CSLD2_ORYSJ	2, ., 4, ., 1, ., -	0.6278	0.9579	0.9538	yes	no
Q2QNS6	CSLD4_ORYSJ	2, ., 4, ., 1, ., -	0.6861	0.9845	0.9440	yes	no
A2YU42	CSLD2_ORYSI	2, ., 4, ., 1, ., -	0.6291	0.9630	0.9589	N/A	no
Q9SRW9	CSLD5_ARATH	2, ., 4, ., 1, ., -	0.8040	0.9974	0.9839	yes	no
A2ZAK8	CSLD1_ORYSI	2, ., 4, ., 1, ., -	0.6392	0.9278	0.9591	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.766
4th Layer	2.4.1.12	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1165
PLN02248		1135	PLN02248, PLN02248, cellulose synthase-like protei	0.0
pfam03552		716	pfam03552, Cellulose_synt, Cellulose synthase	0.0
PLN02436		1094	PLN02436, PLN02436, cellulose synthase A	0.0
PLN02638		1079	PLN02638, PLN02638, cellulose synthase A (UDP-form	0.0
PLN02915		1044	PLN02915, PLN02915, cellulose synthase A [UDP-form	0.0
PLN02189		1040	PLN02189, PLN02189, cellulose synthase	0.0
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	0.0
PLN02400		1085	PLN02400, PLN02400, cellulose synthase	0.0
PLN02190		756	PLN02190, PLN02190, cellulose synthase-like protei	1e-112
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	4e-82
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	9e-37
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	3e-16
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	9e-13
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	5e-10
COG1215		439	COG1215, COG1215, Glycosyltransferases, probably i	8e-10
PRK11498		852	PRK11498, bcsA, cellulose synthase catalytic subun	2e-08
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	1e-05
cd06423		180	cd06423, CESA_like, CESA_like is the cellulose syn	1e-04
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	3e-04
pfam13632		194	pfam13632, Glyco_trans_2_3, Glycosyl transferase f	4e-04
PRK11498		852	PRK11498, bcsA, cellulose synthase catalytic subun	5e-04
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	6e-04
COG5175		480	COG5175, MOT2, Transcriptional repressor [Transcri	8e-04
pfam00535		168	pfam00535, Glycos_transf_2, Glycosyl transferase f	0.001
cd06435		236	cd06435, CESA_NdvC_like, NdvC_like proteins in thi	0.003

>gnl\|CDD\|215138 PLN02248, PLN02248, cellulose synthase-like protein	Back alignment and domain information

 Score = 2264 bits (5868), Expect = 0.0
 Identities = 820/1184 (69%), Positives = 939/1184 (79%), Gaps = 72/1184 (6%)

Query: 4    SASSPSSSPVTITVSSGGKGGGSRSMGLTSPVPRASFSNNPNSPLSGRAHRARSSSGGRY 63
            ++SS   S  +++ SS   G  S               NN +SP S     AR +S GRY
Sbjct: 2    ASSSSKPSRKSLSSSSSSAGPPS---------------NNSSSPQS--VKFARRTSSGRY 44

Query: 64   VSMSKD--DATEEISS-EFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDT 120
            VS+S+D  D + E+SS +++ YTVHIPPTPD+QPM+              K E  ++S++
Sbjct: 45   VSLSRDDLDLSGELSSSDYLNYTVHIPPTPDNQPMAG-------------KAEEQYVSNS 91

Query: 121  IFTGGFNSVTRGHVIDCSFEQTE-----PVKSGLICGMKGCDEKVMQNK-------CDCG 168
            IFTGGFNSVTR H++D   E            G  C M GCD KVM+++       C+CG
Sbjct: 92   IFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECG 151

Query: 169  FKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKR 228
            FKICR+CY++     GG CPGCKEPYK        D+ + +E   ALPLP     K+D+R
Sbjct: 152  FKICRDCYIDAV-KSGGICPGCKEPYKVTDL----DDEVPDESSGALPLPPPGGSKMDRR 206

Query: 229  LSLVK--SFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKD-GYGAESGSNGFEHPSDFG 285
            LSL+K  S   ++   DFDH RWLFETKGTYGYGNA+WPKD GYG + G  G   P +F 
Sbjct: 207  LSLMKSNSLLMRSQTGDFDHNRWLFETKGTYGYGNAVWPKDDGYGDDGGGGG---PGEFM 263

Query: 286  DRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFW 345
            D+  RPL RK+ +S AI+SPYRL+I+ RL  L LFL WR+R+PN +AMWLWGMS+ CE W
Sbjct: 264  DKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIW 323

Query: 346  FAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPP 405
            FAFSW+ DQLPKLCP+NR TDL VLK++FE+P+  NP GRSDLPGIDVFVSTADPEKEPP
Sbjct: 324  FAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPP 383

Query: 406  LVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRN 465
            LVTANTILSILA DYPVEKLACYLSDDGGALLTFEA+AE ASFARIWVPFCRKH+IEPRN
Sbjct: 384  LVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRN 443

Query: 466  PEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRA 525
            PE+YF  KR+  KNK+R DFV++RRRVKREYDEFKVRIN LP+SIRRRSDAYNA EE++A
Sbjct: 444  PESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKA 503

Query: 526  KKKQMEMGGST-AEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAE 584
            KKKQ E GG   +EP+KVPKATWM+DG+HWPGTW S  PDHSRGDHAGIIQ ML PP+ E
Sbjct: 504  KKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDE 563

Query: 585  PVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPF 644
            P+ G  AD ENLID T+VD+RLPMLVYVSREKRPGYDHNKKAGAMNALVR SAIMSNGPF
Sbjct: 564  PLMGS-ADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPF 622

Query: 645  ILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVA 704
            ILNLDCDHYIYNSLA+REGMCFM+DRGGDRICYVQFPQRFEGIDP+DRYANHNTVFFDV 
Sbjct: 623  ILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVN 682

Query: 705  MRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDE 764
            MRALDGLQGP+YVGTGC+FRR ALYGF PPRA EH G FGS K           KK   E
Sbjct: 683  MRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGCFGSCKFT---------KKKKKE 733

Query: 765  IALPINGDHND--DDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPP 822
             +     +  D  DD D+E  LLPKRFGNST  AASIPVAE+QGR L D       GRPP
Sbjct: 734  TSASEPEEQPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPS-VKNGRPP 792

Query: 823  GSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRS 882
            G+L VPREPLDAATVAEAISVISC+YEDKTEWG RVGWIYGSVTEDVVTGYRMHNRGWRS
Sbjct: 793  GALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRS 852

Query: 883  VYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNV 942
            VYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRR+KFLQR+AY NV
Sbjct: 853  VYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRLKFLQRIAYLNV 912

Query: 943  GMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGIT 1002
            G+YPFTS+FL+VYC LPA+SLFSGQFIVQ+L+++FL+YLL IT+TLC+LA+LEIKWSGIT
Sbjct: 913  GIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGIT 972

Query: 1003 LHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEV 1062
            L +WWRNEQFW+IGGTSAH AAVLQGLLKVIAG++ISFTLTSKSA  +D DD+FA+LY V
Sbjct: 973  LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSA-GDDEDDEFADLYIV 1031

Query: 1063 KWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLM 1122
            KW+ LM+PPITIMMVN+IAIAVGV+RT+YS  PQWS+L+GGVFFS WVL+HLYPFAKGLM
Sbjct: 1032 KWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLM 1091

Query: 1123 GRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDY-MKFQFP 1165
            GRRG+  TIV++WSGL+S+ ISLLWV ISPPSG       FQFP
Sbjct: 1092 GRRGRTPTIVYVWSGLLSITISLLWVAISPPSGAAQIGGGFQFP 1135

Length = 1135

>gnl\|CDD\|217611 pfam03552, Cellulose_synt, Cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215239 PLN02436, PLN02436, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215121 PLN02189, PLN02189, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|215224 PLN02400, PLN02400, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215122 PLN02190, PLN02190, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2	Back alignment and domain information

>gnl\|CDD\|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|227502 COG5175, MOT2, Transcriptional repressor [Transcription]	Back alignment and domain information

>gnl\|CDD\|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2	Back alignment and domain information

>gnl\|CDD\|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1165
PLN02248		1135	cellulose synthase-like protein	100.0
PLN02400		1085	cellulose synthase	100.0
PLN02638		1079	cellulose synthase A (UDP-forming), catalytic subu	100.0
PLN02436		1094	cellulose synthase A	100.0
PLN02915		1044	cellulose synthase A [UDP-forming], catalytic subu	100.0
PLN02189		1040	cellulose synthase	100.0
PLN02195		977	cellulose synthase A	100.0
PF03552		720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	100.0
PLN02190		756	cellulose synthase-like protein	100.0
PLN02893		734	Cellulose synthase-like protein	100.0
TIGR03030		713	CelA cellulose synthase catalytic subunit (UDP-for	100.0
PRK11498		852	bcsA cellulose synthase catalytic subunit; Provisi	100.0
PRK05454		691	glucosyltransferase MdoH; Provisional	100.0
cd04191		254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.97
COG1215		439	Glycosyltransferases, probably involved in cell wa	99.96
PRK14583		444	hmsR N-glycosyltransferase; Provisional	99.96
PRK11204		420	N-glycosyltransferase; Provisional	99.94
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.94
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	99.91
PF14569		80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	99.9
cd06421		234	CESA_CelA_like CESA_CelA_like are involved in the	99.88
PRK11234		727	nfrB bacteriophage N4 adsorption protein B; Provis	99.88
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.88
cd06427		241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.85
cd06435		236	CESA_NdvC_like NdvC_like proteins in this family a	99.84
PF13641		228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.82
PRK15489		703	nfrB bacteriophage N4 adsorption protein B; Provis	99.78
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	99.74
cd04190		244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.73
cd04192		229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.69
cd02520		196	Glucosylceramide_synthase Glucosylceramide synthas	99.66
PF13632		193	Glyco_trans_2_3: Glycosyl transferase family group	99.65
cd06434		235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.65
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.63
COG2943		736	MdoH Membrane glycosyltransferase [Cell envelope b	99.56
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.46
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	99.45
cd06438		183	EpsO_like EpsO protein participates in the methano	99.08
cd06436		191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.07
PF13506		175	Glyco_transf_21: Glycosyl transferase family 21	99.05
cd04195		201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	98.95
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	98.94
cd04184		202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	98.92
cd06433		202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	98.63
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	98.56
cd02510		299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	98.54
PF03142		527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	98.54
cd02522		221	GT_2_like_a GT_2_like_a represents a glycosyltrans	98.51
cd04196		214	GT_2_like_d Subfamily of Glycosyltransferase Famil	98.47
PF00535		169	Glycos_transf_2: Glycosyl transferase family 2; In	98.44
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	98.42
cd06423		180	CESA_like CESA_like is the cellulose synthase supe	98.35
cd04185		202	GT_2_like_b Subfamily of Glycosyltransferase Famil	98.35
PLN02726		243	dolichyl-phosphate beta-D-mannosyltransferase	98.34
cd06442		224	DPM1_like DPM1_like represents putative enzymes si	98.32
cd06913		219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	98.1
cd02526		237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	98.02
cd04179		185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	98.0
PRK10073		328	putative glycosyl transferase; Provisional	97.89
PRK10018		279	putative glycosyl transferase; Provisional	97.87
cd04188		211	DPG_synthase DPG_synthase is involved in protein N	97.84
KOG2571		862	consensus Chitin synthase/hyaluronan synthase (gly	97.7
cd04187		181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	97.62
TIGR01556		281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	97.61
cd00761		156	Glyco_tranf_GTA_type Glycosyltransferase family A	97.4
PRK10063		248	putative glycosyl transferase; Provisional	97.37
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	97.33
COG5175		480	MOT2 Transcriptional repressor [Transcription]	97.23
COG1216		305	Predicted glycosyltransferases [General function p	96.83
PRK13915		306	putative glucosyl-3-phosphoglycerate synthase; Pro	96.82
PF10111		281	Glyco_tranf_2_2: Glycosyltransferase like family 2	96.43
PRK10714		325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	93.88
KOG2547		431	consensus Ceramide glucosyltransferase [Lipid tran	92.5
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	89.77
cd02514		334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	87.01
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	82.46
COG0463		291	WcaA Glycosyltransferases involved in cell wall bi	80.47
PHA02862		156	5L protein; Provisional	80.43

>PLN02248 cellulose synthase-like protein	Back alignment and domain information

Probab=100.00  E-value=8.3e-322  Score=2858.50  Aligned_cols=1086  Identities=73%  Similarity=1.271  Sum_probs=1003.2

Q ss_pred             cccccccccCCCCcccccCccccccccc---cceeeeEEEcCCCCCCCCCCccccCcccCcccccCccccccccccccCC
Q 001071           49 SGRAHRARSSSGGRYVSMSKDDATEEIS---SEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDTIFTGG  125 (1165)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ytv~ipptpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (1165)
                      .|.++|+|||+||||+|+||||+|++++   +||+|||||||||||||||.             +++|+||+||++||||
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~   96 (1135)
T PLN02248         30 PQSVKFARRTSSGRYVSLSRDDLDLSGELSSSDYLNYTVHIPPTPDNQPMA-------------GKAEEQYVSNSIFTGG   96 (1135)
T ss_pred             CCCCCCCccCCCCcceeccccccccccccccccceeeEEeCCCCCCCcccc-------------cchhhhccccceecCC
Confidence            3788999999999999999999887666   69999999999999999995             4799999999999999


Q ss_pred             CCcccccccccccccCC--CC---CCCCCcceeecCCCccccc-------ccccCCccchhhhhhhhcCCCCCCCCCCCc
Q 001071          126 FNSVTRGHVIDCSFEQT--EP---VKSGLICGMKGCDEKVMQN-------KCDCGFKICRECYLECAGNGGGRCPGCKEP  193 (1165)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~---~~~g~~C~i~gcd~~~~~d-------~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~  193 (1165)
                      ||+|||||+|||++|++  ||   +++|+.|.+.|||+++|+|       ||||+|+|||+||.|+.+.| ++||+||++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  175 (1135)
T PLN02248         97 FNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSG-GICPGCKEP  175 (1135)
T ss_pred             CCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcC-CCCCCCccc
Confidence            99999999999999997  87   7789999999999999977       99999999999999999995 899999999


Q ss_pred             cccCCCCCccccccccc-cCCCCCCC--ccchhhhhhcccccccccccCCCCCCCCccccccccccccccccccCCCCCC
Q 001071          194 YKDASDGEIEDEVISEE-GDQALPLP--SMADFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYG  270 (1165)
Q Consensus       194 yk~~~~~~~e~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  270 (1165)
                      ||.   +|++|++++.+ ..++++.|  ++++++++.+++  .+++.++|++||||+|||+|+||+||||||.|++++..
T Consensus       176 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  250 (1135)
T PLN02248        176 YKV---TDLDDEVPDESSGALPLPPPGGSKMDRRLSLMKS--NSLLMRSQTGDFDHNRWLFETKGTYGYGNAVWPKDDGY  250 (1135)
T ss_pred             ccc---ccccccccccccccccCCCCCCcccccccccccc--cchhccCCCCCCCCceeeeecccccccccccCcccccc
Confidence            988   66655555433 34556554  778888887776  66788899999999999999999999999999998543


Q ss_pred             CCCCCCCCCCCCCCCcCCCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHH
Q 001071          271 AESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSW  350 (1165)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~w  350 (1165)
                      .+++++  ....+++|++|+||+||++|++++|+|||+++++||++|++||+|||+|++.+++|+|+++++||+||+|+|
T Consensus       251 ~~~~~~--~~~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~W  328 (1135)
T PLN02248        251 GDDGGG--GGPGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSW  328 (1135)
T ss_pred             CCCCCc--cccccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHH
Confidence            222211  122378999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHhhcccceeeccccchhhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEc
Q 001071          351 VFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLS  430 (1165)
Q Consensus       351 iL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~Yvs  430 (1165)
                      +|+|++||+||+|.||+|||++|||+|+|+||+|+++||+||||||||||+||||++|+||||||||+|||+|||+||||
T Consensus       329 ll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvS  408 (1135)
T PLN02248        329 LLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLS  408 (1135)
T ss_pred             HHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhh
Q 001071          431 DDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESI  510 (1165)
Q Consensus       431 DDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~  510 (1165)
                      |||||+||||||+|||+|||+||||||||||||||||+||++|.++++++++|+|++|||+|||||||||+|||+|+++|
T Consensus       409 DDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~  488 (1135)
T PLN02248        409 DDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSI  488 (1135)
T ss_pred             cCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccchHHHHHHHHHHhh-cCCCCCCcccCCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCc
Q 001071          511 RRRSDAYNAHEELRAKKKQME-MGGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGV  589 (1165)
Q Consensus       511 ~~~~~~~~~~ee~~~~~~~~~-~~~~~~~~~~~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~  589 (1165)
                      ++|||+||+.||++.+++++| ++.+|.+++|+||+|||+|||||||+|+++.++|+++|||+||||||++|++|+.+|.
T Consensus       489 ~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~  568 (1135)
T PLN02248        489 RRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGS  568 (1135)
T ss_pred             cccccccchhHHHHhhhhhhhhcccccccccccccceeeccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCc
Confidence            999999999999887766766 3778889999999999999999999999999999999999999999999999999985


Q ss_pred             ccCCCCcccccccccccCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhh
Q 001071          590 EADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLD  669 (1165)
Q Consensus       590 ~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D  669 (1165)
                      . ++++.+|++++|++||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||++||+|||||||
T Consensus       569 ~-~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD  647 (1135)
T PLN02248        569 A-DDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD  647 (1135)
T ss_pred             c-cccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence            4 577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEecCeeecCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhh
Q 001071          670 RGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIK  749 (1165)
Q Consensus       670 ~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~  749 (1165)
                      ++|+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||+.++..+.+++   |
T Consensus       648 ~~g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~~~~---~  724 (1135)
T PLN02248        648 RGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGCFGS---C  724 (1135)
T ss_pred             CCCCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccccccccc---c
Confidence            9999999999999999999999999999999999999999999999999999999999999999998766555443   4


Q ss_pred             hcccCcccccccccccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCC
Q 001071          750 LCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPR  829 (1165)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~  829 (1165)
                      |+++++++..+......   ..+.. ++++.....++++||+|+.|++|++.++.+|+++.++.++ ++++|+|++..++
T Consensus       725 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~-~~~~~~~~~~~~~  799 (1135)
T PLN02248        725 KFTKKKKKETSASEPEE---QPDLE-DDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSV-KNGRPPGALTVPR  799 (1135)
T ss_pred             ccccccccccccccccc---ccccc-ccchhhhhhhhhhhccchhhhhhhHHHhhccccccccccc-ccccccccccccc
Confidence            44433222111110000   00111 2223444568999999999999999889999999988887 9999999999999


Q ss_pred             CccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHh
Q 001071          830 EPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLR  909 (1165)
Q Consensus       830 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~R  909 (1165)
                      +++++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||++++++|.|+||+|+.++++||+|
T Consensus       800 ~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~R  879 (1135)
T PLN02248        800 EPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLR  879 (1135)
T ss_pred             cCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             hhcchhHHHhhhccccccccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHH
Q 001071          910 WATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLC  989 (1165)
Q Consensus       910 WA~G~iQIl~sk~~pL~~~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~  989 (1165)
                      ||+|++||++++++|++..++|+++|||+|++.++|||.++++++|+++|++||++|++++++.+..|++|+++++++++
T Consensus       880 WA~G~lQIf~sr~~Pll~~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~  959 (1135)
T PLN02248        880 WATGSVEIFFSRNNALLASRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLC  959 (1135)
T ss_pred             HhhchHHHHhccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHH
Confidence            99999999999999988778999999999999999999999999999999999999999999988899999988888889


Q ss_pred             HHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchH
Q 001071          990 MLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMV 1069 (1165)
Q Consensus       990 l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLli 1069 (1165)
                      +++++|++|+|+++++|||+||||+|+++++|++|++++++|+|++++++|+||+|.. +++.+++|+++|+|+||++++
T Consensus       960 ~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~-~~d~~~~~a~ly~f~wS~L~i 1038 (1135)
T PLN02248        960 LLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSA-GDDEDDEFADLYIVKWTSLMI 1038 (1135)
T ss_pred             HHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCccc-ccccccccchheecCcchHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 444566789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhhe
Q 001071         1070 PPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVY 1149 (1165)
Q Consensus      1070 P~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~ 1149 (1165)
                      |+++++++|++|+++|++|++++.++.|+.+++++|+++|+++|+|||+||||||+||+||||+|||++++++||||||+
T Consensus      1039 P~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~ 1118 (1135)
T PLN02248       1039 PPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVA 1118 (1135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheE
Confidence            99999999999999999999987667888899999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCC-CcccccC
Q 001071         1150 ISPPSGRQD-YMKFQFP 1165 (1165)
Q Consensus      1150 i~~~~~~~~-~~~~~~~ 1165 (1165)
                      |+||.+.++ .|+||||
T Consensus      1119 ~~~~~~~~~~~~~~~~~ 1135 (1135)
T PLN02248       1119 ISPPSGAAQIGGGFQFP 1135 (1135)
T ss_pred             eccccCccccCceecCC
Confidence            999998877 5799997

>PLN02400 cellulose synthase	Back alignment and domain information

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>PLN02436 cellulose synthase A	Back alignment and domain information

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>PLN02189 cellulose synthase	Back alignment and domain information

>PLN02195 cellulose synthase A	Back alignment and domain information

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals	Back alignment and domain information

>PLN02190 cellulose synthase-like protein	Back alignment and domain information

>PLN02893 Cellulose synthase-like protein	Back alignment and domain information

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan	Back alignment and domain information

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A	Back alignment and domain information

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily	Back alignment and domain information

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A	Back alignment and domain information

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin	Back alignment and domain information

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis	Back alignment and domain information

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2	Back alignment and domain information

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis	Back alignment and domain information

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	Back alignment and domain information

>PF13506 Glyco_transf_21: Glycosyl transferase family 21	Back alignment and domain information

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	Back alignment and domain information

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans	Back alignment and domain information

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2	Back alignment and domain information

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	Back alignment and domain information

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase	Back alignment and domain information

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1	Back alignment and domain information

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine	Back alignment and domain information

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase	Back alignment and domain information

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	Back alignment and domain information

>PRK10073 putative glycosyl transferase; Provisional	Back alignment and domain information

>PRK10018 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation	Back alignment and domain information

>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1	Back alignment and domain information

>TIGR01556 rhamnosyltran L-rhamnosyltransferase	Back alignment and domain information

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>COG1216 Predicted glycosyltransferases [General function prediction only]	Back alignment and domain information

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional	Back alignment and domain information

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]	Back alignment and domain information

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	Back alignment and domain information

>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PHA02862 5L protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1165
4hg6_A		802	Structure Of A Cellulose Synthase - Cellulose Trans		2e-08

>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802

Back alignment and structure

Iteration: 1

Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 859 GWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 918 G+ ++TED T +H+RGW+S+Y R G P + Q RWATG +++ Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391 Query: 919 FSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFL 978 +N L R + QR+ Y N + F + +++ + P + LF G I + L Sbjct: 392 LLKNP--LFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVL 449 Query: 979 IYL 981 Y+ Sbjct: 450 AYM 452

PyMOL of 4hg6

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1165
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	4e-10
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93	Back alignment and structure

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 140 EQTEPVK--SGLICGMKGCDEKVMQNK-------C-DCGFKICRECYLECAGNGGGRCPG 189
              +P+K   G  C +  C +++           C +CGF  CR CY      G   CP 
Sbjct: 6   SGPKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQ 63

Query: 190 CKEPYKDASDG-EIEDEVISEEGD 212
           CK  YK       +E +   E+ D
Sbjct: 64  CKTRYKRLRGSPRVEGDEDEEDID 87

PyMOL of 1weo

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.8 bits (136), Expect = 4e-08
 Identities = 68/486 (13%), Positives = 136/486 (27%), Gaps = 141/486 (29%)

Query: 73  EEISSEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFIS--DTIFTGG--FN- 127
           EE+  +FV   +      +++ +    + +  + +      R +I   D ++     F  
Sbjct: 76  EEMVQKFVEEVLR----INYKFLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 128 -SVTRGHVIDC---SFEQTEPVKSGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNG 183
            +V+R         +  +  P K+ LI G+ G  +  +         +C    ++C  + 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDF 182

Query: 184 G------GRCPGCKEPYKDASDGEIEDEVISEEGDQALPLPSMADFKLDKRLSLVKSFKA 237
                    C                + V+    +    L    D     R     + K 
Sbjct: 183 KIFWLNLKNC-------------NSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 238 QNHPPDFDHTRWLFETKGTYGYGNAL------WPKDGYGAESGSNGFEHPSDFGDRCRRP 291
           + H       R L ++K    Y N L                     +  + F   C   
Sbjct: 226 RIHSIQ-AELRRLLKSK---PYENCLLVLLNVQNA------------KAWNAFNLSC--- 266

Query: 292 LARKIGVSTAIISPYRLIIVTRLAALALFL-AWRIRHPNREAMWLWGMSI--TCEFWFAF 348
                          ++++ TR   +  FL A    H + +      ++           
Sbjct: 267 ---------------KILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSL-LL- 308

Query: 349 SWV---FDQLPK-LCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEP 404
            ++      LP+ +   N              P   +    S    I   ++T D  K  
Sbjct: 309 KYLDCRPQDLPREVLTTN--------------PRRLSIIAES----IRDGLATWDNWKHV 350

Query: 405 PLVTANTILSI-LAVDYPVEKLACYLSDDGGALLTFE--ALAETASFARIWVPFCRKHNI 461
                 TI+   L V  P E    +       L  F   A   T   + IW       ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDR-----LSVFPPSAHIPTILLSLIW------FDV 399

Query: 462 EPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDA-YNAH 520
              +      +    L     L        V+++  E  + I S+   ++ + +  Y  H
Sbjct: 400 IKSDVMVVVNK----LHKY-SL--------VEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 521 EELRAK 526
             +   
Sbjct: 447 RSIVDH 452

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.3 bits (101), Expect = 6e-04
 Identities = 90/559 (16%), Positives = 153/559 (27%), Gaps = 230/559 (41%)

Query: 643  PFILNLDC----------------DHYIYNSLALREGMCFMLD---RGGDRICYVQF--- 680
             F+ N DC                DH I  S     G   +        + +   +F   
Sbjct: 28   AFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEE 85

Query: 681  -----------PQRFEGIDPN----------DRYANHNTVF--FDVAMRALDGLQGPMYV 717
                       P + E   P+          DR  N N VF  ++V+ R    L+     
Sbjct: 86   VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLK----- 139

Query: 718  GTGCIFRRTALYGFSPPRATEHHGWFGSRKIKL---CLRKPKVAKKVDDEIA-LPINGDH 773
                   R AL    P +     G  GS K  +        KV  K+D +I  L +  + 
Sbjct: 140  ------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNC 192

Query: 774  NDDDADIESL--LLPKRFGNSTSLA---ASIP--VAEYQGRLLQDLQGKGNQGRPPGSLA 826
            N  +  +E L  LL +   N TS +   ++I   +   Q  L + L+ K         L 
Sbjct: 193  NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLL 248

Query: 827  VPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCV 886
            V    L         +V             +  W                          
Sbjct: 249  V----LL--------NV----------QNAKA-W-------------------------- 259

Query: 887  TKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYP 946
               +AF  +  I LT R  QV               + L A+        + + ++ + P
Sbjct: 260  ---NAFNLSCKILLTTRFKQVT--------------DFLSAATTTHI--SLDHHSMTLTP 300

Query: 947  FTSMFLLVYCI------LPAVSLFSGQFIVQSLSIS-FLIYLLAITVTLCMLALLE---I 996
                 LL+  +      LP           + L+ +   + ++A          +     
Sbjct: 301  DEVKSLLLKYLDCRPQDLPR----------EVLTTNPRRLSIIA--------ESIRDGLA 342

Query: 997  KWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQF 1056
             W      D W++                     K+   ++ S         P +    F
Sbjct: 343  TW------DNWKHVNCD-----------------KLTTIIESSL----NVLEPAEYRKMF 375

Query: 1057 AEL----YEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLS 1112
              L             +P I + ++                   W  +I        V++
Sbjct: 376  DRLSVFPPSAH-----IPTILLSLI-------------------WFDVIKSDVMV--VVN 409

Query: 1113 HLYPFAKGLMGRRGKVSTI 1131
             L+     L+ ++ K STI
Sbjct: 410  KLH--KYSLVEKQPKESTI 426

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1165
4hg6_A		802	Cellulose synthase subunit A; membrane translocati	100.0
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	99.89
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.24
1xhb_A		472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.23
2d7i_A		570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.1
2ffu_A		501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.06
1qg8_A		255	Protein (spore coat polysaccharide biosynthesis P	98.99
3bcv_A		240	Putative glycosyltransferase protein; protein stru	98.94
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	98.79
3ckj_A		329	Putative uncharacterized protein; mycobacteria, un	98.33
4fix_A		657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	98.22
3l7i_A		729	Teichoic acid biosynthesis protein F; GT-B fold, m	98.15
3f1y_A		387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	97.11
2fy7_A		287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	96.77
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	95.39
2nxv_A		249	ATP synthase subunits region ORF 6; majastridin, A	93.38
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	85.23
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	81.51
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	81.02

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}	Back alignment and structure

Probab=100.00  E-value=2.9e-48  Score=478.60  Aligned_cols=494  Identities=21%  Similarity=0.333  Sum_probs=379.6

Q ss_pred             hH-HHHHHHHHHHHHHHHHhccCCC-c----hhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCC
Q 001071          307 RL-IIVTRLAALALFLAWRIRHPNR-E----AMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLC  380 (1165)
Q Consensus       307 R~-~i~~~lv~l~~~l~wRi~~~~~-~----~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~  380 (1165)
                      |+ ++++.+++.++|++||++.+.. .    ..++|++++++|+++.+.|++.++..|+|+.|...++            
T Consensus        66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~------------  133 (802)
T 4hg6_A           66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP------------  133 (802)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------------
Confidence            54 4455566678999999998754 2    3568899999999999999999999999999874321            


Q ss_pred             CCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcC
Q 001071          381 NPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHN  460 (1165)
Q Consensus       381 ~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~  460 (1165)
                        ..++++|.|+|+||||   ||++.++.+|+.|++++|||.+|+.|+|.|||.++-|.+.                   
T Consensus       134 --~~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~-------------------  189 (802)
T 4hg6_A          134 --LQPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS-------------------  189 (802)
T ss_dssp             --CCTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-------------------
T ss_pred             --CCccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-------------------
Confidence              0146799999999999   9999999999999999999999999999999998733221                   


Q ss_pred             CCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcc
Q 001071          461 IEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPV  540 (1165)
Q Consensus       461 IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~  540 (1165)
                                          .+|+.+++.++   .+++++    .+.             ++                  
T Consensus       190 --------------------~d~~i~~~~~~---~~~~l~----~~~-------------~~------------------  211 (802)
T 4hg6_A          190 --------------------PDPELAQKAQE---RRRELQ----QLC-------------RE------------------  211 (802)
T ss_dssp             --------------------SSHHHHHHHHH---HHHHHH----HHH-------------HH------------------
T ss_pred             --------------------CCHHHHHHHHh---hhHHHH----HHH-------------Hh------------------
Confidence                                11222222111   111111    110             00                  


Q ss_pred             cCCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCC
Q 001071          541 KVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGY  620 (1165)
Q Consensus       541 ~~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~  620 (1165)
                                                                                        ..+.|+.|+++   
T Consensus       212 ------------------------------------------------------------------~~v~~i~~~~~---  222 (802)
T 4hg6_A          212 ------------------------------------------------------------------LGVVYSTRERN---  222 (802)
T ss_dssp             ------------------------------------------------------------------HTCEEEECSSC---
T ss_pred             ------------------------------------------------------------------cCcEEEEecCC---
Confidence                                                                              01358888764   


Q ss_pred             CcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCC-------Ccc
Q 001071          621 DHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPN-------DRY  693 (1165)
Q Consensus       621 ~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~-------Dry  693 (1165)
                       ++.||||+|..++.    ++++||+++|||.++ +|++|++.+.+|.+  ++++++||+|+.|.|.++.       +++
T Consensus       223 -~~GKa~alN~gl~~----a~gd~Il~lDaD~~~-~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~~~~~~~  294 (802)
T 4hg6_A          223 -EHAKAGNMSAALER----LKGELVVVFDADHVP-SRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNLALGDRC  294 (802)
T ss_dssp             -CSHHHHHHHHHHHH----CCCSEEEECCTTEEE-CTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHHTCCTTS
T ss_pred             -CCcchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhhhHHhhh
Confidence             55899999999985    589999999999998 69999999999964  2899999999999987632       456


Q ss_pred             cchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCC
Q 001071          694 ANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDH  773 (1165)
Q Consensus       694 ~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (1165)
                      .+++..||.....+.+.+++++++|+++++||+++..                                           
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~-------------------------------------------  331 (802)
T 4hg6_A          295 PPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE-------------------------------------------  331 (802)
T ss_dssp             CCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH-------------------------------------------
T ss_pred             hHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHH-------------------------------------------
Confidence            6788999999999999999999999999999999852                                           


Q ss_pred             CCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccc
Q 001071          774 NDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTE  853 (1165)
Q Consensus       774 ~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~  853 (1165)
                                                    +|                                                
T Consensus       332 ------------------------------vG------------------------------------------------  333 (802)
T 4hg6_A          332 ------------------------------AG------------------------------------------------  333 (802)
T ss_dssp             ------------------------------HT------------------------------------------------
T ss_pred             ------------------------------cC------------------------------------------------
Confidence                                          11                                                


Q ss_pred             cccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhcccccccccccc
Q 001071          854 WGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKF  933 (1165)
Q Consensus       854 WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl  933 (1165)
                           ||.+++++||.+++++|+.+||++.|+++  +.+++.+|+|+.++++||.||++|.+|+++. ++|++ .+++++
T Consensus       334 -----gf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~-~~~l~~  404 (802)
T 4hg6_A          334 -----GFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRGRWATGMMQMLLL-KNPLF-RRGLGI  404 (802)
T ss_dssp             -----TCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTS-CSSCCH
T ss_pred             -----CcCCCCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHHHHHHccHHHHHHH-hCccc-cCCCCH
Confidence                 67777889999999999999999999964  6778999999999999999999999999985 46665 688999


Q ss_pred             ccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHH
Q 001071          934 LQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFW 1013 (1165)
Q Consensus       934 ~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W 1013 (1165)
                      .+|++|+..+++++.+++.++++++|+++++++..++......++.+++|+++...+....  .. +.....|| ++.++
T Consensus       405 ~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~--~~-~~~r~~~~-~~l~~  480 (802)
T 4hg6_A          405 AQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNA--LF-ARQRWPLV-SEVYE  480 (802)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHHH--HH-TTTSCTTH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHHH--Hh-cCcHHHHH-HHHHH
Confidence            9999999999999999999999999999999999988887777777777777654432211  12 22111233 33333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001071         1014 VIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSP 1093 (1165)
Q Consensus      1014 ~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~ 1093 (1165)
                      .+... ..+.+++.+   .+++++.+|+||+|+...   +..+     | + .++.|++++++++++++++|+++.....
T Consensus       481 ~~~~~-~~~~a~l~~---l~~~~~~~f~VT~Kg~~~---~~~~-----~-~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~  546 (802)
T 4hg6_A          481 VAQAP-YLARAIVTT---LLRPRSARFAVTAKDETL---SENY-----I-S-PIYRPLLFTFLLCLSGVLATLVRWVAFP  546 (802)
T ss_dssp             HHHHH-HHHHHHHHH---HHSTTCCCCCCCCCCCCC---SSCC-----B-C-TTCHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHH-HHHHHHHHH---HhCCCCCcceECCCCccc---cccc-----h-h-hHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33211 112233333   356788999999998722   2222     1 2 4678999999999999999999877543


Q ss_pred             CCchhhhHHHHHHHHHHHHhHHHHHHHHhc
Q 001071         1094 FPQWSRLIGGVFFSLWVLSHLYPFAKGLMG 1123 (1165)
Q Consensus      1094 ~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~g 1123 (1165)
                      .    ...+.+++++|+++|++.+.-++..
T Consensus       547 ~----~~~~~~~~~~w~~~~l~~l~~~~~~  572 (802)
T 4hg6_A          547 G----DRSVLLVVGGWAVLNVLLVGFALRA  572 (802)
T ss_dssp             G----GHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C----ccchhhhhhHHHHHHHHHHHHHHHH
Confidence            2    2345778899999999999988873

PyMOL of 4hg6

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17	Back alignment and structure

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*	Back alignment and structure

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*	Back alignment and structure

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*	Back alignment and structure

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A	Back alignment and structure

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*	Back alignment and structure

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*	Back alignment and structure

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*	Back alignment and structure

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1165
d1weoa_		93	g.44.1.1 (A:) Cellulose synthase A catalytic subun	4e-04

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 140 EQTEPVK--SGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCK 191
              +P+K   G  C + G    +         C +CGF  CR CY      G   CP CK
Sbjct: 6   SGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCK 65

Query: 192 EPYKDASDGE-IEDEVISEEGD 212
             YK       +E +   E+ D
Sbjct: 66  TRYKRLRGSPRVEGDEDEEDID 87

PyMOL of d1weoa_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1165
d1weoa_		93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	99.9
d1xhba2		328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.04
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	98.13
d1omza_		265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	97.74
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	95.26
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	88.89
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	87.9
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	85.93
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	83.43
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	81.12

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=7e-25  Score=195.68  Aligned_cols=64  Identities=33%  Similarity=0.744  Sum_probs=59.5

Q ss_pred             CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCccccccc
Q 001071          145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVIS  208 (1165)
Q Consensus       145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~~  208 (1165)
                      .+++|+|||||++++++.|     || ||+|||||+|||||+|||+|+||||||+|||||     +||+|||+.|
T Consensus        13 ~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~e~~~d   87 (93)
T d1weoa_          13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID   87 (93)
T ss_dssp             CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred             hcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCCCCCCCccccccc
Confidence            8999999999999999988     99 999999999999999999999999999999998     6887766554

PyMOL of d1weoa_

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure