Citrus Sinensis ID: 001081

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160--

MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL

cccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEccccEEEEEccccccccccccEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccccccccccccccEEccccccccEEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHcccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHcc

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maenknrwnwevsgfeprnssssslqferedrrpdapvVRRYAISAasalphsseiSKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIkvfcrtrplfedegpsvveftddctirvntgddtisnpkkdfefdrvygphvgqaelfsdvqpFVQSALDGYNVSIFaygqthsgkthtmegsshdrglYARCFEELfdlsnsdttatARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQsrgndvskfnVSHLIIMIHIYYNNLITGENLYSKLSLVDlagsegliaeddsgerITDVLHVMKSLSALGDVLSsltsrkdivpyeNSMLTKVLADSLGESSKTLMIVnicpnaanMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSdlksenymlaDKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRnealhssevrstirsepmpavssvlrttgdgmdssAVSKKLEEELKKRDALIERLHEENEKLFDRLTEkassvsspqlssplskgsvnvqprdmarndnnnkglpvdvaplplsadkteGTVALVKSSsekikttpaGEYLTAAlndfnpeqydnlaVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLarspelqsimvspvecfleksntgrsrsssrgssparspvhyvdEKIQGfkinlkpekkskLSSVVLRMrgidqdtwrhqvtggKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFlsvtgddasggttgQLELLSTAIMDGwmaglggavppstDALGQLLSEYAKRVYNSQLQHLKDIAGtlatedaedASQVSKLRSALESVDHRRRKVLQQMRSDVALLTleeggspirnpstaaEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERmpslldidhpcaQRQIADARRMVEVLQQMRSDVALLTleeggspiqnpstaAEDARLASLISLDGILNQVKVFTSL

maenknrwnwevsgfeprnssssslqferedrrpdapVVRRYAISaasalphsseiskQALSTKVQRLKDEIKFVKEDYLELRQEatdlqeysnakidrVTRYLGvladktrklgnikvfcrtrplfedegpsvveftddctirvntgddtisnpkKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSltsrkdivpyeNSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTvlslgnrdtikkwRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSiesqrnealhssevrstirsepmpavssvlrttgdgmdssaVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsvnvQPRDMArndnnnkglpvdVAPLPLSADKTEGTVALVksssekikttpAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKmeptrvmdtmlVSRVRILYIRSLLarspelqsimvSPVECFLEKsntgrsrsssrgssparspvhyvDEKIqgfkinlkpekksklSSVVLRmrgidqdtwrhqvtggkLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVtgddasggTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLrsalesvdhrrRKVLQQMRSDVALltleeggspirnpSTAAEDARLASLISLDGILNQVKDAvrqssvntlsrskkkaMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLIsldgilnqvkvftsl

MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNqvaqllqleqeqkmqiqqRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTgrsrsssrgssparspVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL

*******************************************************************LKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTH*************RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAA******************VLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK***YM***********************************************************************************************************************************************************************************************GEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL************************VDEKIQGFKIN**********SVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGT*************************************************************ASLISLDGILNQV**********************************LDIDHPCAQRQIADARRMVEVLQQMRSDVALLT*******************LASLISLDGILNQVKVF***

*****NR******************************************************************************************DRVTRYLGVLADKTRKLGNIKVFCRTRPLFED*****************************FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP*****************IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI**ENLYSKLSLVDLAGSEGL*******E**TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQD************************************************************************************************************************************************************************************************************************************************LTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLL***********S*V*******************************KIQGF*************SVVLRMR***********************KSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSK**SA**S**HRRRKVLQQMRSDVALLT******************RLASLISLDGILNQVKD******************LTSLDELAERMPSLLDIDHPCAQRQIADARRMV**********************************ASLISLDGILNQVKVFTSL

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********************************************************SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG***********ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS***************************SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK**************************************************GTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK*****************SPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQ*************************EDARLASLISLDGILNQVKVFTSL

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MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISxxxxxxxxxxxxxxxxxxxxxxxxxxxxATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQQRDSTxxxxxxxxxxxxxxxxxxxxxSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVxxxxxxxxxxxxxxxxxxxxxxxxLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1162	2.2.26 [Sep-21-2011]
Q9LX99		1273	Geminivirus Rep-interacti	yes	no	0.944	0.862	0.709	0.0
O81635		987	Kinesin-4 OS=Arabidopsis	no	no	0.338	0.398	0.355	3e-59
O35231		824	Kinesin-like protein KIFC	yes	no	0.277	0.391	0.373	2e-52
P28739		770	Kinesin-like protein klpA	yes	no	0.327	0.493	0.348	1e-51
Q9BVG8		833	Kinesin-like protein KIFC	yes	no	0.277	0.387	0.373	3e-51
F4JGP4		790	Kinesin-5 OS=Arabidopsis	no	no	0.338	0.497	0.327	1e-50
P46875		754	Kinesin-3 OS=Arabidopsis	no	no	0.277	0.428	0.362	5e-50
Q07970		793	Kinesin-1 OS=Arabidopsis	no	no	0.283	0.414	0.35	2e-49
Q9US03		817	Kinesin-like protein 2 OS	yes	no	0.324	0.461	0.336	7e-49
P46864		745	Kinesin-2 OS=Arabidopsis	no	no	0.274	0.428	0.36	3e-48

>sp\|Q9LX99\|GRIMP_ARATH Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1	Back alignment and function desciption

 Score = 1615 bits (4181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/1138 (70%), Positives = 946/1138 (83%), Gaps = 40/1138 (3%)

Query: 6    NRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKV 65
            NRWNWEVSGFEPR SSS++   E    R   P++RR +IS  S  P      KQA+++KV
Sbjct: 9    NRWNWEVSGFEPRKSSSNASFAESTGHRTTGPLLRRNSISTPSLPP------KQAIASKV 62

Query: 66   QRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKL----------- 114
              LK+++K  KEDYLELRQEATDLQEYSNAK+DRVTRYLGVLA+K+RKL           
Sbjct: 63   NGLKEKVKLAKEDYLELRQEATDLQEYSNAKLDRVTRYLGVLAEKSRKLDQFVLETEARI 122

Query: 115  ------------------GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK 156
                              GNIKVFCR RPLFEDEGPSV+EF  DCTI VNT DDT+SNPK
Sbjct: 123  SPLINEKKRLFNDLLTAKGNIKVFCRARPLFEDEGPSVIEFPGDCTICVNTSDDTLSNPK 182

Query: 157  KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 216
            KDFEFDRVYGPHVGQA LFSDVQPFVQSALDG NVSI +YGQT++GKT+TMEGS+HDRGL
Sbjct: 183  KDFEFDRVYGPHVGQAALFSDVQPFVQSALDGSNVSILSYGQTNAGKTYTMEGSNHDRGL 242

Query: 217  YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIE 276
            YARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L  I +   ES IE
Sbjct: 243  YARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPNINMDLHESVIE 302

Query: 277  LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVD 336
            L QEKVDNPLEF  VLKSAF +RGN  SKFNV+HLI+ IHIYY+N ITGEN+YSKLSLVD
Sbjct: 303  LGQEKVDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIYYSNTITGENIYSKLSLVD 362

Query: 337  LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLG 396
            LAGSEGLI E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD +PY+NS+LT+VLADSLG
Sbjct: 363  LAGSEGLIMENDSGDHVTDLLHVMNSISALGDVLSSLTSGKDSIPYDNSILTRVLADSLG 422

Query: 397  ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYE 456
             SSKTLMIVNICP+   +SET+S LN+++RAR+TV SLGNRDTIKKWRD+A+DARKEL E
Sbjct: 423  GSSKTLMIVNICPSVQTLSETISCLNYAARARNTVPSLGNRDTIKKWRDVASDARKELLE 482

Query: 457  REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI 516
            +E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSEN ML DKH++
Sbjct: 483  KERENQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSFTLQSDLKSENIMLVDKHRL 542

Query: 517  EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTI 576
            EKEQN+QLRNQ+AQ LQL+QEQK+Q+QQ+DS I+ LQAKI  +ESQ +EA+ S   R+  
Sbjct: 543  EKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQAKITDLESQVSEAVRSDTTRTGD 602

Query: 577  RSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSV 636
              +     S + +      DSS+V+KKLEEELKKRDALIERLHEENEKLFDRLTE++ +V
Sbjct: 603  ALQSQDIFSPIPKAVEGTTDSSSVTKKLEEELKKRDALIERLHEENEKLFDRLTERSMAV 662

Query: 637  SSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIK 696
            S+ Q+ SP  + S N+QP     N N  +G   +   LP + +K  G + LVKS ++ +K
Sbjct: 663  ST-QVLSPSLRASPNIQP----ANVNRGEGYSAEAVALPSTPNKNNGAITLVKSGTDLVK 717

Query: 697  TTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAV 756
            TTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREHEILAEIRD+V
Sbjct: 718  TTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREHEILAEIRDSV 777

Query: 757  FAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSS 816
            F+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVECFLEK NTGRS+S+S
Sbjct: 778  FSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVECFLEKPNTGRSKSTS 837

Query: 817  RGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQ 876
            RGSSP RSPV Y+D +I GFK+N+K E+++KL+SVV RMRG++QD  R QVTG KLRE+Q
Sbjct: 838  RGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRMRGLEQDAGRQQVTGVKLREMQ 897

Query: 877  EEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLST 936
            +EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG  GQLELLST
Sbjct: 898  DEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTSDDVSGGNGGQLELLST 957

Query: 937  AIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSK 996
            AIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E+AEDA QVSK
Sbjct: 958  AIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAEEAEDAGQVSK 1017

Query: 997  LRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQV 1056
            LRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASLISLDGIL QV
Sbjct: 1018 LRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASLISLDGILKQV 1077

Query: 1057 KDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQ 1114
            K+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A ++VE + +
Sbjct: 1078 KEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAHQLVETIPE 1135

Acts as a mitotic kinesin, but its function is not restricted to mitosis.
Arabidopsis thaliana (taxid: 3702)

>sp\|O81635\|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2	Back alignment and function description

>sp\|O35231\|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4	Back alignment and function description

>sp\|P28739\|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3	Back alignment and function description

>sp\|Q9BVG8\|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4	Back alignment and function description

>sp\|F4JGP4\|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1	Back alignment and function description

>sp\|P46875\|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1	Back alignment and function description

>sp\|Q07970\|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1	Back alignment and function description

>sp\|Q9US03\|KLP2_SCHPO Kinesin-like protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp2 PE=3 SV=1	Back alignment and function description

>sp\|P46864\|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1162
356526755		1282	PREDICTED: geminivirus Rep-interacting m	0.946	0.858	0.754	0.0
356567769		1283	PREDICTED: geminivirus Rep-interacting m	0.946	0.857	0.752	0.0
449496402		1276	PREDICTED: LOW QUALITY PROTEIN: geminivi	0.940	0.856	0.750	0.0
449451393		1276	PREDICTED: geminivirus Rep-interacting m	0.940	0.856	0.750	0.0
356497704		1280	PREDICTED: geminivirus Rep-interacting m	0.944	0.857	0.735	0.0
356501588		1272	PREDICTED: geminivirus Rep-interacting m	0.939	0.858	0.739	0.0
297811153		1273	hypothetical protein ARALYDRAFT_487877 [	0.943	0.860	0.718	0.0
72255627		1257	117M18_26 [Brassica rapa]	0.947	0.875	0.701	0.0
15238169		1273	geminivirus Rep-interacting motor protei	0.944	0.862	0.709	0.0
145334367		1274	geminivirus Rep-interacting motor protei	0.945	0.862	0.707	0.0

>gi\|356526755\|ref\|XP_003531982.1\| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]	Back alignment and taxonomy information

 Score = 1724 bits (4465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 861/1141 (75%), Positives = 984/1141 (86%), Gaps = 41/1141 (3%)

Query: 1    MAENKNRWNWEVSGFEPRNSSSSSLQF--EREDRRPDAPVVRRYAISAASALPHSSEISK 58
            MAE KNRW+W+V+GF+P  SS    Q   E  DR+P AP+VRRY+ISA S LP      K
Sbjct: 1    MAEQKNRWSWDVAGFDPWKSSPPPPQPAAEHGDRKPSAPLVRRYSISATSVLPQP----K 56

Query: 59   QALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKL---- 114
             A++ K+QRLKD++K  KEDYL+LRQEA++LQEYSNAK+DRVTRYLGVLA+KTRKL    
Sbjct: 57   HAVAFKLQRLKDKVKLAKEDYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTRKLDQVT 116

Query: 115  -------------------------GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGD 149
                                     GNI+VFCRTRPLFEDEGPSV+EF DD TI VNTGD
Sbjct: 117  LETEARISPVINEKRRLFNDLLTSKGNIRVFCRTRPLFEDEGPSVIEFPDDYTICVNTGD 176

Query: 150  DTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209
            +++SN KKDF+FDRVYGPHVGQAELFSDVQP VQSALDGYNVSIFAYGQTHSGKTHTMEG
Sbjct: 177  ESLSNAKKDFKFDRVYGPHVGQAELFSDVQPLVQSALDGYNVSIFAYGQTHSGKTHTMEG 236

Query: 210  SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQ 269
            SS+DRGLYARCFEELFDL+N DTT+T+R+ F VTV ELYNEQ R+LL + G    K+ L 
Sbjct: 237  SSYDRGLYARCFEELFDLANLDTTSTSRYKFCVTVCELYNEQTRDLLLEAGKSTPKLCLG 296

Query: 270  SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLY 329
            S E  +ELVQE +D+PLEFS VLKSA Q+R ND+SK N+SHLI+ IHI+YNNLITGEN Y
Sbjct: 297  SPECFVELVQENIDSPLEFSAVLKSALQTRENDLSKNNISHLIVTIHIFYNNLITGENSY 356

Query: 330  SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK 389
            SKLSLVDLAGSEGLI EDDSG+R+TD+LHVMKSLSALGDVLSSLTS+KDI+PYENS+LTK
Sbjct: 357  SKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSLLTK 416

Query: 390  VLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIAND 449
            +LADSLG SSKTLMIVN+CP+ +N+SETLSS+NFS+RAR++ LSLGN+DTIKKWRD+AND
Sbjct: 417  LLADSLGGSSKTLMIVNVCPSISNLSETLSSVNFSARARNSTLSLGNQDTIKKWRDVAND 476

Query: 450  ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYM 509
            ARKELYE+EKEI DLKQE L L+QALK+ANDQC+LL+NEVQKA KVS  LQ+DLKSE+ +
Sbjct: 477  ARKELYEKEKEIHDLKQEGLELKQALKDANDQCILLFNEVQKARKVSSVLQTDLKSEHVL 536

Query: 510  LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569
            L+DKH IEKEQN QLRNQVAQLL+LEQ+QK+QIQ++DSTI++LQAKI ++E+Q NEA+ S
Sbjct: 537  LSDKHNIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQLNEAIKS 596

Query: 570  SEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRL 629
            SE RST  SEP  A  S  R TGDG+DSSAV+KKLEEELKKRDALIERLHEENEKLFDRL
Sbjct: 597  SESRSTFVSEPEFADQSNSRPTGDGIDSSAVTKKLEEELKKRDALIERLHEENEKLFDRL 656

Query: 630  TEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVK 689
            T+KAS+  SP+LSSPL+ GS NVQPRD+  + +      +DV P PL+ DK +GTVALVK
Sbjct: 657  TQKASTAGSPKLSSPLAHGSANVQPRDIGSSRS------MDVLPSPLATDKNDGTVALVK 710

Query: 690  SSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEIL 749
            + SE +KTTPAGEYLTAALNDF+P+QY+  A ISDGANKLLMLVLAAVIKAGASREHEIL
Sbjct: 711  TGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEIL 770

Query: 750  AEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNT 809
            AEIRD+VF+FIRKMEP +VMDTMLVSRVRILYIRSLLARSPELQSI V PVECFLEK+NT
Sbjct: 771  AEIRDSVFSFIRKMEPKQVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKTNT 830

Query: 810  GRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTG 869
            GRSRSSSRGSSP RSPV YVDE+IQGFK+NLKPEKKSK SSVVL++RGID+D WR QVTG
Sbjct: 831  GRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQVTG 890

Query: 870  GKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTG 929
            GKLREI EEAKSFA GN+ALAALFVHTPAGELQRQIRSWLAE+FEFLS+TG+DASGG+TG
Sbjct: 891  GKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAESFEFLSLTGEDASGGSTG 950

Query: 930  QLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAE 989
            QLELLSTAIMDGWMAGLG A+PP TDALGQLL EY+KRVY SQLQHLKDIAGTLATE+AE
Sbjct: 951  QLELLSTAIMDGWMAGLGAALPPHTDALGQLLFEYSKRVYTSQLQHLKDIAGTLATEEAE 1010

Query: 990  DASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISL 1049
            DA+QV+KLRSALESVDH+RRK+LQQM+SD+ALLTLE GG PI+NPSTAAEDARLASLISL
Sbjct: 1011 DAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGFPIQNPSTAAEDARLASLISL 1070

Query: 1050 DGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMV 1109
            D IL Q+KD  R SSVN L++SKKK ML SL+EL E+MPSLL+IDHPCAQR IADAR MV
Sbjct: 1071 DSILKQIKDMTRLSSVNILTKSKKKTMLASLNELTEQMPSLLEIDHPCAQRHIADARYMV 1130

Query: 1110 E 1110
            E
Sbjct: 1131 E 1131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356567769\|ref\|XP_003552088.1\| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|449496402\|ref\|XP_004160125.1\| PREDICTED: LOW QUALITY PROTEIN: geminivirus Rep-interacting motor protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449451393\|ref\|XP_004143446.1\| PREDICTED: geminivirus Rep-interacting motor protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356497704\|ref\|XP_003517699.1\| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|356501588\|ref\|XP_003519606.1\| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|297811153\|ref\|XP_002873460.1\| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata] gi\|297319297\|gb\|EFH49719.1\| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|72255627\|gb\|AAZ66945.1\| 117M18_26 [Brassica rapa]	Back alignment and taxonomy information

>gi|15238169|ref|NP_196609.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi|75311662|sp|Q9LX99.1|GRIMP_ARATH RecName: Full=Geminivirus Rep-interacting motor protein; AltName: Full=Geminivirus replication protein-interacting protein gi|7671456|emb|CAB89396.1| putative protein [Arabidopsis thaliana] gi|21428315|gb|AAM49809.1| geminivirus replication protein-interacting protein [Arabidopsis thaliana] gi|332004163|gb|AED91546.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|145334367\|ref\|NP_001078565.1\| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi\|332004164\|gb\|AED91547.1\| geminivirus Rep-interacting motor protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1162
TAIR\|locus:2148543		987	ATK4 "kinesin 4" [Arabidopsis	0.337	0.397	0.374	6.4e-54
TAIR\|locus:2014129		1140	AT1G18410 [Arabidopsis thalian	0.340	0.347	0.367	2.9e-50
ASPGD\|ASPL0000005109		770	klpA [Emericella nidulans (tax	0.358	0.540	0.342	1.9e-49
TAIR\|locus:2061992		983	AT2G47500 [Arabidopsis thalian	0.345	0.408	0.347	2.8e-49
TAIR\|locus:2101645		1087	KP1 "kinesin-like protein 1" [	0.351	0.375	0.327	3.1e-49
TAIR\|locus:2027854		1025	AT1G73860 [Arabidopsis thalian	0.351	0.399	0.334	8.4e-49
TAIR\|locus:2155095		961	AT5G41310 [Arabidopsis thalian	0.334	0.404	0.335	1.2e-47
UNIPROTKB\|F1P110		399	KIFC3 "Uncharacterized protein	0.277	0.809	0.381	7.8e-47
UNIPROTKB\|F1P0D6		371	KIFC3 "Uncharacterized protein	0.268	0.840	0.392	1.3e-46
MGI\|MGI:109202		824	Kifc3 "kinesin family member C	0.282	0.398	0.369	1.8e-46

TAIR\|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 588 (212.0 bits), Expect = 6.4e-54, P = 6.4e-54
 Identities = 157/419 (37%), Positives = 230/419 (54%)

Query:    52 HSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKT 111
             H  E+ +   +TK      ++K+ +ED+  L +    L  Y+     RV      L +  
Sbjct:   331 HIQELKQTLYTTKAGMKLLQMKY-QEDFFHLGKHLNGLA-YAATGYKRVLEENRKLYNLV 388

Query:   112 RKL-GNIKVFCRTRPLF---EDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGP 167
             + L GNI+V+CR RP     E  G S VE  D+ TI +          +K F F++V+GP
Sbjct:   389 QDLKGNIRVYCRVRPFLPGQESGGLSAVEDIDEGTITIRVPSKYGKAGQKPFMFNKVFGP 448

Query:   168 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG----SSHDRGLYARCFEE 223
                Q E+FSD+QP V+S LDGYNV IFAYGQT SGKT TM G    +    G+  R   +
Sbjct:   449 SATQEEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTEESLGVNYRALAD 508

Query:   224 LFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA-KIRLQSL------ESSIE 276
             LF LSN     T+ +  +V + E+YNEQ+R+LL Q G     +IR  S       E+S+ 
Sbjct:   509 LFLLSNQRKDTTS-YEISVQMLEIYNEQVRDLLAQDGQTKRLEIRNNSHNGINVPEASLV 567

Query:   277 LVQEKVD--NPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSL 334
              V    D    ++   + ++   +  ND S  + SH  + +H+   +L +G  L+  + L
Sbjct:   568 PVSSTDDVIQLMDLGHMNRAVSSTAMNDRS--SRSHSCVTVHVQGRDLTSGSILHGSMHL 625

Query:   335 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS 394
             VDLAGSE +   + +G+R+ +  H+ KSLSALGDV+SSL+ +   VPY NS LT++L DS
Sbjct:   626 VDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDS 685

Query:   395 LGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG--NRDT--IKKWRD-IAN 448
             LG S+KTLM V+I P    + ET+S+L F+ R  S  L     N+D   +K+ ++ IAN
Sbjct:   686 LGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIAN 744

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR\|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000005109 klpA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2155095 AT5G41310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P110 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0D6 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LX99	GRIMP_ARATH	No assigned EC number	0.7091	0.9449	0.8625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1162
cd01366		329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	5e-99
cd00106		328	cd00106, KISc, Kinesin motor domain	1e-97
pfam00225		326	pfam00225, Kinesin, Kinesin motor domain	4e-90
smart00129		335	smart00129, KISc, Kinesin motor, catalytic domain	1e-81
cd01369		325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	5e-66
cd01371		333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	2e-58
cd01364		352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-54
cd01372		341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	4e-53
cd01365		356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	6e-53
cd01370		338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	2e-49
cd01373		337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	1e-46
cd01375		334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-46
cd01374		321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	9e-46
cd01376		319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	1e-45
cd01367		322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	4e-43
COG5059		568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	2e-40
cd01368		345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	2e-39
PLN03188		1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	9e-31
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	1e-17
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	4e-13
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam13851		201	pfam13851, GAS, Growth-arrest specific micro-tubul	3e-04
COG1579		239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002

>gnl\|CDD\|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

 Score =  316 bits (813), Expect = 5e-99
 Identities = 146/333 (43%), Positives = 196/333 (58%), Gaps = 21/333 (6%)

Query: 115 GNIKVFCRTRPLFEDEGP---SVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPHV 169
           GNI+VFCR RPL   E     SV+ F D+   TI ++ G    +  KK F FDRV+ P  
Sbjct: 2   GNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDA 57

Query: 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 229
            Q ++F +V P VQSALDGYNV IFAYGQT SGKT+TMEG   + G+  R  E+LF+ + 
Sbjct: 58  SQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAE 117

Query: 230 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK--IRLQSL-ESSIE-LVQEKVDNP 285
                   +    ++ E+YNE +R+LL        K  I+  S  E+ +  L +  V +P
Sbjct: 118 ELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSP 177

Query: 286 LEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
            E +++L    ++R       N+ S  + SH +  + I   NL TGE    KL+LVDLAG
Sbjct: 178 EEVTRLLNLGSKNRSVASTNMNEHS--SRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAG 235

Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
           SE L     +G+R+ +   + KSLSALGDV+S+L S+   VPY NS LT +L DSLG +S
Sbjct: 236 SERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNS 295

Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
           KTLM VNI P  +N+SETL SL F+SR RS  L
Sbjct: 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl\|CDD\|238054 cd00106, KISc, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|215803 pfam00225, Kinesin, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|214526 smart00129, KISc, Kinesin motor, catalytic domain	Back alignment and domain information

>gnl\|CDD\|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>gnl\|CDD\|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>gnl\|CDD\|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>gnl\|CDD\|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>gnl\|CDD\|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>gnl\|CDD\|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>gnl\|CDD\|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>gnl\|CDD\|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>gnl\|CDD\|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>gnl\|CDD\|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>gnl\|CDD\|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group	Back alignment and domain information

>gnl\|CDD\|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>gnl\|CDD\|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding	Back alignment and domain information

>gnl\|CDD\|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1162
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245		1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG4280		574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0240		607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
cd01370		338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
PLN03188		1320	kinesin-12 family protein; Provisional	100.0
cd01373		337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
cd01368		345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
KOG0242		675	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0241		1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01367		322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01365		356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01371		333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01369		325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01376		319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374		321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01366		329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
cd01364		352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01375		334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd01372		341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd00106		328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0247		809	consensus Kinesin-like protein [Cytoskeleton]	100.0
smart00129		335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
PF00225		335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0246		676	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	100.0
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363		186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	99.96
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	98.41
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.52
PRK11637		428	AmiB activator; Provisional	96.39
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	95.81
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.77
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.75
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	95.7
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.64
PRK11637		428	AmiB activator; Provisional	95.6
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	95.55
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	95.44
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	95.42
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.06
PRK09039		343	hypothetical protein; Validated	94.97
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	94.95
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	94.92
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.89
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	94.88
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	94.82
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.72
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.64
KOG4673		961	consensus Transcription factor TMF, TATA element m	94.63
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.31
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.25
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	94.21
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.18
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	94.12
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	94.1
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	93.53
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	93.49
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	93.47
KOG0996		1293	consensus Structural maintenance of chromosome pro	93.46
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.42
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	93.4
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	93.37
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	93.27
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	93.21
PF14662		193	CCDC155: Coiled-coil region of CCDC155	93.17
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	93.16
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.12
PF00038		312	Filament: Intermediate filament protein; InterPro:	93.11
PF00038		312	Filament: Intermediate filament protein; InterPro:	92.99
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	92.86
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	92.71
PHA02562		562	46 endonuclease subunit; Provisional	92.53
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	92.48
PHA02562		562	46 endonuclease subunit; Provisional	92.47
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	92.42
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.39
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	92.08
PF14662		193	CCDC155: Coiled-coil region of CCDC155	91.96
COG5185		622	HEC1 Protein involved in chromosome segregation, i	91.88
PRK02224		880	chromosome segregation protein; Provisional	91.7
PRK03918		880	chromosome segregation protein; Provisional	91.65
KOG0996		1293	consensus Structural maintenance of chromosome pro	91.64
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	91.64
KOG0971		1243	consensus Microtubule-associated protein dynactin	91.61
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	91.39
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	91.21
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	91.2
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	91.11
PRK04863		1486	mukB cell division protein MukB; Provisional	90.98
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	90.94
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	90.91
KOG0971		1243	consensus Microtubule-associated protein dynactin	90.88
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	90.84
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.62
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	90.57
KOG1937		521	consensus Uncharacterized conserved protein [Funct	90.56
PRK10884		206	SH3 domain-containing protein; Provisional	90.4
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	90.4
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	90.36
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.33
KOG0933		1174	consensus Structural maintenance of chromosome pro	90.22
COG4372		499	Uncharacterized protein conserved in bacteria with	90.04
PRK03918		880	chromosome segregation protein; Provisional	89.98
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	89.9
PRK04863		1486	mukB cell division protein MukB; Provisional	89.89
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	89.83
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	89.83
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	89.82
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.8
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	89.74
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	89.62
PRK12377		248	putative replication protein; Provisional	89.38
PRK10929		1109	putative mechanosensitive channel protein; Provisi	89.35
PRK02224		880	chromosome segregation protein; Provisional	89.21
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	88.99
PRK08084		235	DNA replication initiation factor; Provisional	88.96
PF09738		302	DUF2051: Double stranded RNA binding protein (DUF2	88.88
PRK06893		229	DNA replication initiation factor; Validated	88.86
PRK06620		214	hypothetical protein; Validated	88.85
KOG2991		330	consensus Splicing regulator [RNA processing and m	88.79
KOG0933		1174	consensus Structural maintenance of chromosome pro	88.74
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	88.62
COG4372		499	Uncharacterized protein conserved in bacteria with	88.51
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	88.36
PRK09039		343	hypothetical protein; Validated	88.09
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.07
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	87.89
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	87.88
PRK08116		268	hypothetical protein; Validated	87.65
PRK07952		244	DNA replication protein DnaC; Validated	87.63
PRK14086		617	dnaA chromosomal replication initiation protein; P	87.63
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	87.52
COG5185		622	HEC1 Protein involved in chromosome segregation, i	87.5
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.5
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	87.45
PRK03992		389	proteasome-activating nucleotidase; Provisional	87.37
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.26
PRK14088		440	dnaA chromosomal replication initiation protein; P	87.16
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.09
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	87.02
COG4942		420	Membrane-bound metallopeptidase [Cell division and	86.9
PRK00106		535	hypothetical protein; Provisional	86.84
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	86.73
KOG0963		629	consensus Transcription factor/CCAAT displacement	86.55
PRK05642		234	DNA replication initiation factor; Validated	86.52
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	86.51
PRK12704		520	phosphodiesterase; Provisional	86.34
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	86.26
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	86.18
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	86.07
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	85.99
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	85.91
KOG0728		404	consensus 26S proteasome regulatory complex, ATPas	85.82
KOG4807		593	consensus F-actin binding protein, regulates actin	85.79
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	85.61
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.58
PRK08903		227	DnaA regulatory inactivator Hda; Validated	85.53
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	85.52
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	85.4
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	85.35
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	85.28
PRK00149		450	dnaA chromosomal replication initiation protein; R	85.21
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.1
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	85.06
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.01
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	84.8
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.75
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	84.58
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.21
PRK06835		329	DNA replication protein DnaC; Validated	84.15
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	84.09
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	84.0
PF10186		302	Atg14: UV radiation resistance protein and autopha	84.0
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.89
KOG4360		596	consensus Uncharacterized coiled coil protein [Fun	83.88
PRK14087		450	dnaA chromosomal replication initiation protein; P	83.61
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	83.59
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	83.53
PRK09087		226	hypothetical protein; Validated	83.41
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	83.37
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	83.34
COG2433		652	Uncharacterized conserved protein [Function unknow	83.29
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	83.05
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	82.97
KOG0964		1200	consensus Structural maintenance of chromosome pro	82.84
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.49
KOG0018		1141	consensus Structural maintenance of chromosome pro	82.23
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	82.1
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	81.92
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	81.88
PRK00411		394	cdc6 cell division control protein 6; Reviewed	81.34
KOG2991		330	consensus Splicing regulator [RNA processing and m	81.18
KOG0963		629	consensus Transcription factor/CCAAT displacement	81.09
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	81.04
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	80.92
KOG2751		447	consensus Beclin-like protein [Signal transduction	80.82
PRK08727		233	hypothetical protein; Validated	80.82
PRK01156		895	chromosome segregation protein; Provisional	80.75
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	80.7
COG1484		254	DnaC DNA replication protein [DNA replication, rec	80.53
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	80.42
KOG0288		459	consensus WD40 repeat protein TipD [General functi	80.15

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=2.3e-79  Score=740.62  Aligned_cols=349  Identities=33%  Similarity=0.498  Sum_probs=295.5

Q ss_pred             CCCEEEEEeeCCCCCCCC----CceEEeCC-CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhc
Q 001081          114 LGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD  187 (1162)
Q Consensus       114 lGnIrV~~RVRPl~~~E~----~s~V~~~d-~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLd  187 (1162)
                      -.||+|+|||||+++.|.    +.+|.+++ ..-|.+...-.+. .-.+.|+||+||+|.+.|++||+. |.|+|..|+.
T Consensus        48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~  126 (1041)
T KOG0243|consen   48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE  126 (1041)
T ss_pred             CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence            389999999999998873    34666666 4447776652211 135899999999999999999997 6999999999


Q ss_pred             CCceeEeeeccCCCCCcccccc--------CCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC
Q 001081          188 GYNVSIFAYGQTHSGKTHTMEG--------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT  259 (1162)
Q Consensus       188 GyN~~IFAYGQTGSGKTyTM~G--------s~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~  259 (1162)
                      |||||||||||||+||||||+|        .+.+.|||||++.+||+.+...   +.+|.|+|||+|+|||.++|||++.
T Consensus       127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~---~~EYsvKVSfLELYNEEl~DLLa~~  203 (1041)
T KOG0243|consen  127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ---GAEYSVKVSFLELYNEELTDLLASE  203 (1041)
T ss_pred             cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc---CCeEEEEEEehhhhhHHHHHhcCCc
Confidence            9999999999999999999999        5678999999999999988643   3689999999999999999999887


Q ss_pred             CCCceEEee--c-------ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec-cCC
Q 001081          260 GNGLAKIRL--Q-------SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG  325 (1162)
Q Consensus       260 ~~~~~~i~~--~-------~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~-~tg  325 (1162)
                      .......++  +       ....+.|+-+..|++..++.++|..|...|.++.|.    |||||+||+|+|..... ..|
T Consensus       204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g  283 (1041)
T KOG0243|consen  204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG  283 (1041)
T ss_pred             cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence            653111221  1       123355899999999999999999999999998874    99999999999976543 233


Q ss_pred             c--eeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEE
Q 001081          326 E--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM  403 (1162)
Q Consensus       326 ~--~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvM  403 (1162)
                      +  ...|||+||||||||.+.++|+.+.|.+|++.||+||++||+||+||.++..|||||+|||||||||||||.+||+|
T Consensus       284 eelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~i  363 (1041)
T KOG0243|consen  284 EELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCI  363 (1041)
T ss_pred             hhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEE
Confidence            3  34799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCHHHHHHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081          404 IVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ  481 (1162)
Q Consensus       404 Ia~ISPs~~n~eETLsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq  481 (1162)
                      |+||||+..+++||++||.||.||++|+++|..+...               .+...+++|-.||++|+..|.++.++
T Consensus       364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl---------------~K~~llKd~~~EIerLK~dl~AaReK  426 (1041)
T KOG0243|consen  364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL---------------MKKTLLKDLYEEIERLKRDLAAAREK  426 (1041)
T ss_pred             EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH---------------HHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            9999999999999999999999999998877653322               23445666777777777777666554

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group	Back alignment and domain information

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>cd00106 KISc Kinesin motor domain	Back alignment and domain information

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>smart00129 KISc Kinesin motor, catalytic domain	Back alignment and domain information

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport	Back alignment and domain information

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01363 Motor_domain Myosin and Kinesin motor domain	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>KOG2991 consensus Splicing regulator [RNA processing and modification]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>KOG2991 consensus Splicing regulator [RNA processing and modification]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1162
2h58_A		330	Crystal Structure Of The Kifc3 Motor Domain In Comp		3e-49
3h4s_A		386	Structure Of The Complex Of A Mitotic Kinesin With		5e-48
1sdm_A		369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		3e-47
2rep_A		376	Crystal Structure Of The Motor Domain Of Human Kine		6e-45
1mkj_A		349	Human Kinesin Motor Domain With Docked Neck Linker		1e-42
1bg2_A		325	Human Ubiquitous Kinesin Motor Domain Length = 325		1e-42
4etp_A		403	C-Terminal Motor And Motor Homology Domain Of Kar3v		1e-42
4atx_C		340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		2e-42
3t0q_A		349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		3e-42
1f9v_A		347	Crystal Structures Of Mutants Reveal A Signalling P		1e-41
3kar_A		346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		1e-41
1f9t_A		358	Crystal Structures Of Kinesin Mutants Reveal A Sign		2e-41
1f9u_A		347	Crystal Structures Of Mutants Reveal A Signalling P		2e-41
1n6m_A		409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		3e-41
2ncd_A		420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		3e-41
1cz7_A		406	The Crystal Structure Of A Minus-End Directed Micro		5e-41
1f9w_A		347	Crystal Structures Of Mutants Reveal A Signalling P		1e-40
2y5w_A		365	Crystal Structure Of Drosophila Melanogaster Kinesi		2e-40
3l1c_A		383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		2e-40
3u06_A		412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		3e-40
4gkr_A		371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		4e-40
1goj_A		355	Structure Of A Fast Kinesin: Implications For Atpas		2e-39
3b6u_A		372	Crystal Structure Of The Motor Domain Of Human Kine		4e-38
2wbe_C		373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		6e-38
2vvg_A		350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-36
3gbj_A		354	Crystal Structure Of The Motor Domain Of Kinesin Ki		3e-34
4h1g_A		715	Structure Of Candida Albicans Kar3 Motor Domain Fus		3e-34
3hqd_A		369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		6e-34
1ii6_A		368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		6e-34
4a1z_A		368	Eg5-1 Length = 368		6e-34
4a28_A		368	Eg5-2 Length = 368		7e-34
1q0b_A		367	Crystal Structure Of The Motor Protein Ksp In Compl		7e-34
1x88_A		359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		7e-34
4ap0_A		370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		7e-34
4aqv_C		373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-33
3zcw_A		348	Eg5 - New Allosteric Binding Site Length = 348		2e-33
1ia0_K		394	Kif1a Head-Microtubule Complex Structure In Atp-For		4e-33
1i5s_A		367	Crystal Structure Of The Kif1a Motor Domain Complex		7e-33
1i6i_A		366	Crystal Structure Of The Kif1a Motor Domain Complex		8e-33
1vfv_A		366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-32
3b6v_A		395	Crystal Structure Of The Motor Domain Of Human Kine		2e-31
4a14_A		344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		2e-31
3bfn_A		388	Crystal Structure Of The Motor Domain Of Human Kine		4e-31
2owm_A		443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		2e-30
2xt3_A		344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		9e-30
3lre_A		355	Crystal Structure Analysis Of Human Kinesin-8 Motor		8e-29
3nwn_A		359	Crystal Structure Of The Human Kif9 Motor Domain In		2e-25
1t5c_A		349	Crystal Structure Of The Motor Domain Of Human Kine		1e-24
1v8j_A		410	The Crystal Structure Of The Minimal Functional Dom		2e-24
2heh_A		387	Crystal Structure Of The Kif2c Motor Domain (Casp T		3e-24
2kin_A		238	Kinesin (Monomeric) From Rattus Norvegicus Length =		5e-24
3edl_D		331	Kinesin13-Microtubule Ring Complex Length = 331		9e-24
1ry6_A		360	Crystal Structure Of Internal Kinesin Motor Domain		2e-21
3dc4_A		344	Crystal Structure Of The Drosophila Kinesin Family		7e-21
2gry_A		420	Crystal Structure Of The Human Kif2 Motor Domain In		1e-20
3pxn_A		344	Crystal Structure Of The Drosophila Kinesin Family		2e-20
3kin_B		117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		9e-09
2kin_B		100	Kinesin (Monomeric) From Rattus Norvegicus Length =		1e-07

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330