Citrus Sinensis ID: 001085
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1160 | ||||||
| 255537413 | 1134 | ATP binding protein, putative [Ricinus c | 0.968 | 0.990 | 0.637 | 0.0 | |
| 224071790 | 1108 | predicted protein [Populus trichocarpa] | 0.944 | 0.989 | 0.622 | 0.0 | |
| 359474019 | 1071 | PREDICTED: uncharacterized protein LOC10 | 0.913 | 0.989 | 0.602 | 0.0 | |
| 356528122 | 1087 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.983 | 0.561 | 0.0 | |
| 356528120 | 1054 | PREDICTED: uncharacterized protein LOC10 | 0.894 | 0.984 | 0.558 | 0.0 | |
| 356497224 | 1091 | PREDICTED: uncharacterized protein LOC10 | 0.927 | 0.986 | 0.535 | 0.0 | |
| 357481659 | 1062 | hypothetical protein MTR_5g010520 [Medic | 0.906 | 0.989 | 0.525 | 0.0 | |
| 356540454 | 1048 | PREDICTED: uncharacterized protein LOC10 | 0.827 | 0.916 | 0.561 | 0.0 | |
| 449457662 | 1076 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.991 | 0.521 | 0.0 | |
| 449500014 | 1086 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.919 | 0.982 | 0.517 | 0.0 |
| >gi|255537413|ref|XP_002509773.1| ATP binding protein, putative [Ricinus communis] gi|223549672|gb|EEF51160.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1352 bits (3498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 747/1171 (63%), Positives = 901/1171 (76%), Gaps = 48/1171 (4%)
Query: 1 MFKSARWRSDKNKIKAVFKLQFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGC 60
MF+SARWRS+KNKIK VFKLQFHATQV+QL + L+ISV+P D+GKPT RL+K I DG
Sbjct: 1 MFRSARWRSEKNKIKTVFKLQFHATQVSQLNADTLVISVIPGDIGKPTARLDKGIIRDGS 60
Query: 61 CRWLNSVYETVKFVREPKSGKISERIYNFIVSTGLSKAGFVGEASIDFADYAEASKTSTV 120
CRW +YETVKF ++ K+GK +ERIY+FIVSTG SK VGE S+DFA YAEA+K STV
Sbjct: 61 CRWEYPIYETVKFTQDIKTGKFNERIYHFIVSTGSSKNSLVGEVSVDFATYAEATKVSTV 120
Query: 121 SLPLKYSRSKAVLHVSIQRVQENVDQ-REKEEIEDASIKAQDRSLRTQLSNSDVEESYKG 179
SLPLK S+S VLHVS + R+ EE E +IK Q+R+L T LSN + E K
Sbjct: 121 SLPLKNSKSNGVLHVSPSSLVAFTKLCRDAEETEHTNIKIQNRTLNTLLSNGNTE-GIKS 179
Query: 180 NGAEEKQPS-PTVNAELNGNCRASSGSDTTLSSSESSSGLNTPRE---------QDPNSF 229
+ E +QPS + N+ELNG+CR SSGSD T+SSSESSSGLNTPRE QDP SF
Sbjct: 180 SSNEARQPSDASHNSELNGDCRTSSGSDITMSSSESSSGLNTPRELGLRNNSILQDPTSF 239
Query: 230 VSSLSHTSVPHKTTENTPTTIYEEHQKSQWEWSAGSDQGISTDDSTNGFQDTFTRERSQQ 289
+SS HT+ HK T N P T+YEEHQ QWEWSA SDQG+STDDS + DT TRERSQ
Sbjct: 240 ISSRGHTTASHKPTTNAPATVYEEHQ--QWEWSADSDQGVSTDDSKDSSHDTLTRERSQG 297
Query: 290 ASDIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKL 349
S IEIEKLK+E+VALARQ DLSELELQTLRKQIVKE KR QDL+REV LKEE+D LK
Sbjct: 298 TSSIEIEKLKAEIVALARQVDLSELELQTLRKQIVKECKRGQDLTREVTGLKEERDALKA 357
Query: 350 DCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQESN 409
+CEKLKTFQKR+++AK +NKL F+GGDP VLL+EI+QEL+YEKDLNANLRLQLQKTQESN
Sbjct: 358 ECEKLKTFQKRIEDAKSKNKLQFEGGDPRVLLDEIKQELNYEKDLNANLRLQLQKTQESN 417
Query: 410 AELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDEDQKALEELVK 469
AELILAV DL+EMLEQKN EISN SNKS S NA + +S +DDDE+QKALE+LVK
Sbjct: 418 AELILAVTDLEEMLEQKNWEISNPSNKSKSSENA------MLRSLSDDDEEQKALEDLVK 471
Query: 470 EHRDVKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQS 529
EH+D KE YLLEQKIMDL SEIEI RRDKDELE QMEQLALDYEILKQENHD+SYKLEQS
Sbjct: 472 EHKDAKEAYLLEQKIMDLSSEIEICRRDKDELEMQMEQLALDYEILKQENHDMSYKLEQS 531
Query: 530 QLQEQLKMQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASEL 589
+LQEQLKMQYECSS S INELE IE L EL
Sbjct: 532 ELQEQLKMQYECSS---------------------------SFVNINELEAQIESLEDEL 564
Query: 590 KKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQA 649
KKQS+E S+ I +LE++I++L NELK+QS+ +SDSL T+ + EA+IK+LE+ELEKQ+
Sbjct: 565 KKQSKEHSDSLEIINKLEAEIQSLKNELKKQSREHSDSLVTLNKFEAHIKSLEDELEKQS 624
Query: 650 QVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDAN 709
Q +EADLE +T AKVEQEQRAI+AEE LRKTR KNANTAE++QEEF+RLSVQ+AS+FDAN
Sbjct: 625 QGFEADLEAITHAKVEQEQRAIRAEEALRKTRWKNANTAEKIQEEFKRLSVQVASTFDAN 684
Query: 710 EKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQM 769
EKVAMKALAEA++L +QK LEEM+ KA+EE S+RDDYE K+ LS QLN + QIEQM
Sbjct: 685 EKVAMKALAEANQLHLQKSQLEEMLQKANEELQSIRDDYEAKMNGLSTQLNFRVGQIEQM 744
Query: 770 LKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVEL 829
L E ++ S QLE QKK++EE G+ S E Q+LK + EKL ++N LSE+AEQKE+ +VEL
Sbjct: 745 LVETDDKSKQLEHQKKNEEELIGSFSQETQRLKGEIEKLKIENNILSEQAEQKENFKVEL 804
Query: 830 AQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLK 889
Q+K ++K E LIQ+ NRER+ L ST+AL KKEAE +EE+ R+ ++DEKE A+ LL+
Sbjct: 805 EQLKLSIKHTEELIQKGNRERNNLASTLALAKKEAEKLLEELNRMILLKDEKEKAISLLQ 864
Query: 890 SELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRAS 949
+E++ LK Q +LK +L EDE EKEKLRKQ FQLKGDLKKKED + S+EKKLK+SN+RA+
Sbjct: 865 TEVKTLKAQYDDLKHSLSEDELEKEKLRKQVFQLKGDLKKKEDIITSIEKKLKESNKRAA 924
Query: 950 VSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLK 1009
V+D T+T LRNNKSAPV QGSKE ANLRE+IKLLEGQIK KE ALE S NSF+EKE+DL
Sbjct: 925 VADCTKTNLRNNKSAPVPQGSKEAANLREKIKLLEGQIKLKETALETSANSFLEKERDLL 984
Query: 1010 NKIEELECRVEELNQNSTSLCELSFQKLATDTIHLTSNGCVLEEVRSPAEFVCSSSCLSK 1069
NKIEELE R+EELNQN+ C+ S QK+ DTI +TSNG + E++ E + SS +S+
Sbjct: 985 NKIEELEDRLEELNQNNVIFCDNSCQKVPEDTIGITSNGGLAEDIAKMDENLSSSGWMSR 1044
Query: 1070 ENGNITPLVKSDDDISIEKDVKPSTTNNEECSINDMLIELDSLKEKNQCMESELKDMQER 1129
ENG + KS I +EK++ T+N + ++L EL+SLKE+N+ ME+ELK+MQER
Sbjct: 1045 ENGTAKSVAKSYAFI-LEKEMNVCVTHNGGSNNQELLCELESLKERNKSMENELKEMQER 1103
Query: 1130 YSEISLKFAEVEGERQKLVMTLRNLKNAKKS 1160
YSEISLKFAEVEGERQ+LVMT+RNLKNAKK
Sbjct: 1104 YSEISLKFAEVEGERQQLVMTVRNLKNAKKG 1134
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071790|ref|XP_002303574.1| predicted protein [Populus trichocarpa] gi|222841006|gb|EEE78553.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359474019|ref|XP_002269404.2| PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356528122|ref|XP_003532654.1| PREDICTED: uncharacterized protein LOC100819574 isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356528120|ref|XP_003532653.1| PREDICTED: uncharacterized protein LOC100819574 isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356497224|ref|XP_003517462.1| PREDICTED: uncharacterized protein LOC100792602 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357481659|ref|XP_003611115.1| hypothetical protein MTR_5g010520 [Medicago truncatula] gi|355512450|gb|AES94073.1| hypothetical protein MTR_5g010520 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356540454|ref|XP_003538704.1| PREDICTED: uncharacterized protein LOC100792680 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449457662|ref|XP_004146567.1| PREDICTED: uncharacterized protein LOC101221081 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449500014|ref|XP_004160979.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221081 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1160 | ||||||
| TAIR|locus:2038446 | 1029 | AT1G63300 "AT1G63300" [Arabido | 0.849 | 0.957 | 0.379 | 2.5e-152 | |
| TAIR|locus:2162996 | 983 | AT5G41140 "AT5G41140" [Arabido | 0.725 | 0.856 | 0.412 | 3.3e-150 | |
| TAIR|locus:2145141 | 853 | AT5G52280 "AT5G52280" [Arabido | 0.502 | 0.683 | 0.288 | 2.7e-88 | |
| TAIR|locus:2030541 | 1999 | AT1G22060 [Arabidopsis thalian | 0.288 | 0.167 | 0.284 | 4.4e-47 | |
| TAIR|locus:2152985 | 1586 | CIP1 "COP1-interactive protein | 0.863 | 0.631 | 0.178 | 4.3e-24 | |
| SGD|S000002216 | 1790 | USO1 "Protein involved in the | 0.731 | 0.474 | 0.200 | 5e-24 | |
| DICTYBASE|DDB_G0286355 | 2116 | mhcA "myosin heavy chain" [Dic | 0.655 | 0.359 | 0.222 | 2.7e-23 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.702 | 0.546 | 0.204 | 9.7e-23 | |
| UNIPROTKB|Q15075 | 1411 | EEA1 "Early endosome antigen 1 | 0.711 | 0.584 | 0.218 | 2.4e-22 | |
| UNIPROTKB|E9PTU4 | 1939 | Myh11 "Myosin-11" [Rattus norv | 0.837 | 0.501 | 0.192 | 6.7e-22 |
| TAIR|locus:2038446 AT1G63300 "AT1G63300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
Identities = 397/1046 (37%), Positives = 577/1046 (55%)
Query: 1 MFKSARWRSDKNKIKAVFKLQFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGC 60
MFKSARWRS+KN+IK VF+L+FHATQ +Q L++S+VP D+GKPT R EKA + DG
Sbjct: 1 MFKSARWRSEKNRIKVVFRLKFHATQASQFNTEGLILSLVPGDIGKPTARSEKAIVNDGH 60
Query: 61 CRWLNSVYETVKFVREPKSGKISERIYNFIVST-GLSKAGFVGEASIDFADYAEASKTST 119
CRW VYETVKF+++ K+GK+++RIY+ IVST G ++ G VGE SIDFADY +A+KT
Sbjct: 61 CRWEIPVYETVKFLKDVKTGKVNQRIYHLIVSTTGSARGGLVGETSIDFADYVDATKTCN 120
Query: 120 VSLPLKYSRSKAVLHVSIQRVQENVD-QREKEEIEDASIKAQDRSLRTQLSNSDVEESYK 178
VSLPL+ S SKA+LHVSIQR E D QR+ +E E +Q L++ S D +E+ K
Sbjct: 121 VSLPLQNSSSKALLHVSIQRQLEFDDPQRDVDECETPVKMSQGLDLKSHFSIGDADENRK 180
Query: 179 GNGAEEKQPSPTVN-AELNGNCRAXXXXXXXXXXXXXXXXXNTPREQDPNSFVSSLSHTS 237
+ EE AEL RA NTP E L H
Sbjct: 181 SDSHEEGPFGKAARFAELRR--RASIESDSTMSSSGSVIEPNTPEE-----VAKPLRH-- 231
Query: 238 VPHKTTENTPTTIYEEHQKSQWEWSAGSDQGIS-TDDSTNGFQDTFTRERSQQASDI-EI 295
P K + + E + S+ EWS SD GIS TDDSTN D R+ + +SD E+
Sbjct: 232 -PTKHLHSAKSLFEEPSRISESEWSGSSDHGISSTDDSTNSSNDIVARDTAINSSDEDEV 290
Query: 296 EKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISXXXXXXXXXXXXXXXX 355
EKLK+ELV L RQADLSELELQ+LRKQIVKE+KR+QDL REV S
Sbjct: 291 EKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQK 350
Query: 356 TFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILA 415
K+ E K RN+L F+G DPWVLLEE R+EL YEKD N NLRLQL+KTQESN+ELILA
Sbjct: 351 VSDKQKGETKTRNRLQFEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILA 410
Query: 416 VQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTD-DDEDQKALEELVKEHRDV 474
VQDL+EMLE+K++E ++ N +E R +S+TD DD DQKALE+LVK+H D
Sbjct: 411 VQDLEEMLEEKSKEGAD---------NIEESMRRSCRSETDEDDHDQKALEDLVKKHVDA 461
Query: 475 KETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDIXXXXXXXXXXXX 534
K+T++LEQKI DLY+EIEIY+RDKDELE QMEQLALDYEILKQ+NHDI
Sbjct: 462 KDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEQ 521
Query: 535 XXXXXECSS-IGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQS 593
ECSS + + +E E QVESLE ELK +S++ S+SL I ELE+ +E L E++KQ+
Sbjct: 522 LKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQA 581
Query: 594 REF-SNFQATIK-ELESQIEAL-GNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQ 650
+ F ++ A + ++E + A+ E +++ + S+A +L+ K L E+++
Sbjct: 582 QVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAG--KLQDEFKRLSEQMDSMFT 639
Query: 651 VYEA-DLEVVTRAKVEQEQRAIQAEETLRKTRLK-NANTAERLQEEFRRLSVQMASSFDA 708
E ++ +T A + Q+ Q EE ++ + AN AE + + LS +++
Sbjct: 640 SNEKMAMKAMTEANELRMQKR-QLEEMIKDANDELRANQAE-YEAKLHELSEKLSFKTSQ 697
Query: 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQ 768
E++ +++E+ QKRH E++ ++E L+++ E L + + L ++ +Q E
Sbjct: 698 MERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIEN-LKKNQDSLMLQAEQAEN 756
Query: 769 MLKEINNLSNQ-LEEQKKHDEEDSGALSLE--IQQLKADTEKLMMDNKSLSEEAEQKESL 825
+ ++ +E + E+ + LE I ++ ++E L + + + ++KE+
Sbjct: 757 LRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETA 816
Query: 826 RVELAQMKT-TVKEYELLIQRANRERD-ELESTIALXXXXXXXXXXXXQRIQRIEDXXXX 883
+ L Q + TV+ ++ + E D E+E + + +E
Sbjct: 817 -ISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKE 875
Query: 884 XXXXXXXXXXXXXXQCHNLKQAL---VEDESEKEKLRKQAFQL-KGDLKKKEDALNSLEK 939
Q +N+ + S++ + K +L +G +K KE AL S
Sbjct: 876 SRTAITKTA-----QRNNINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSN 930
Query: 940 KL--KDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIKSKEIALEAS 997
K+ N + + + T L N S +S+ E I +L +I+S
Sbjct: 931 MFIEKEKNLKNRIEE-LETKLDQN-SQEMSENELLNGQENEDIGVLVAEIESLR-----E 983
Query: 998 TNSFVEKE-KDLKNKIEELECRVEEL 1022
N +E E K+++ + E+ R E+
Sbjct: 984 CNGSMEMELKEMRERYSEISLRFAEV 1009
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| TAIR|locus:2162996 AT5G41140 "AT5G41140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2145141 AT5G52280 "AT5G52280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2030541 AT1G22060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q15075 EEA1 "Early endosome antigen 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PTU4 Myh11 "Myosin-11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1160 | |||
| pfam10358 | 142 | pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 | 5e-16 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-13 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-11 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 9e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-07 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-07 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 9e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 3e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-06 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 9e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-05 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 3e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 5e-05 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 5e-05 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 6e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 8e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 2e-04 | |
| pfam00038 | 312 | pfam00038, Filament, Intermediate filament protein | 2e-04 | |
| pfam00038 | 312 | pfam00038, Filament, Intermediate filament protein | 3e-04 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 3e-04 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 3e-04 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 3e-04 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 7e-04 | |
| TIGR00634 | 563 | TIGR00634, recN, DNA repair protein RecN | 7e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.001 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 0.001 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| pfam05483 | 787 | pfam05483, SCP-1, Synaptonemal complex protein 1 ( | 0.002 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.002 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.003 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.004 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.004 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 0.004 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 0.004 |
| >gnl|CDD|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 3/139 (2%)
Query: 10 DKNKIKAVFKLQFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYE 69
K K+K F L H Q L L + D + KA + +G W
Sbjct: 1 KKKKVKFQFDLSIHELQNVPLVNGELFVKWKRGDKKGNSGTTSKALVNNGRAVWNEEFSI 60
Query: 70 TVKFVREPKSGKISERIYNFIVS--TGLSKAGFVGEASIDFADYA-EASKTSTVSLPLKY 126
+ K GK ++ F+V T K +G+A ID A+YA T+ L K
Sbjct: 61 PCTLFVDKKGGKFEPKLLTFVVYKVTKKGKKKVLGKADIDLAEYANSKEPTTRRLLLKKC 120
Query: 127 SRSKAVLHVSIQRVQENVD 145
S+ A L ++I + + D
Sbjct: 121 SKKNATLSITISLLPLSED 139
|
This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein | Back alignment and domain information |
|---|
| >gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1160 | |||
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 99.83 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.63 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.61 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.52 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.5 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.5 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.49 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.43 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.42 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.28 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.26 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.24 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.22 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.22 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.21 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.07 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.97 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.89 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.83 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.74 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 98.54 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.49 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.46 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.44 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.43 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.4 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.36 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.28 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.25 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.2 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.2 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.19 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.18 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.12 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.08 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.08 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.04 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.97 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.87 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.81 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.78 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.6 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 97.54 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.51 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.45 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.44 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.42 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.33 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.31 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.3 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.3 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.25 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.17 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.09 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.08 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.07 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.98 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.93 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.92 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.91 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.9 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.89 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.88 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.86 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 96.83 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.8 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 96.79 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 96.73 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 96.55 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.45 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 96.45 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.39 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.36 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 96.32 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 96.19 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.1 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.09 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 96.08 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.08 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.07 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 96.02 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.0 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.86 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.69 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.69 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 95.54 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 95.47 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.22 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.21 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 95.14 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.1 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 95.04 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 94.77 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 94.76 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.53 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 94.53 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.52 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.37 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 94.28 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 94.22 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 94.17 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 94.16 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.15 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.12 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 94.02 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 93.96 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 93.96 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 93.85 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.84 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 93.79 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 93.73 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 93.7 | |
| PRK09039 | 343 | hypothetical protein; Validated | 92.9 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 92.85 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 92.63 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.56 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 92.29 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 92.19 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 92.1 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 92.03 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 91.85 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 91.85 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 91.82 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 91.63 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 91.36 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 90.73 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 90.72 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 90.49 | |
| KOG1937 | 521 | consensus Uncharacterized conserved protein [Funct | 90.43 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 90.14 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 90.12 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 89.96 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 89.92 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 89.73 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 89.66 | |
| PF06705 | 247 | SF-assemblin: SF-assemblin/beta giardin | 89.1 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 89.08 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 88.57 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 88.55 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 87.24 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 87.2 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 87.08 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.07 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 86.89 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 86.5 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 86.41 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 86.41 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 86.33 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 86.29 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 86.23 | |
| KOG0249 | 916 | consensus LAR-interacting protein and related prot | 86.07 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 85.95 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 85.95 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 84.55 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 84.45 | |
| PF13166 | 712 | AAA_13: AAA domain | 84.02 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 83.78 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 83.66 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 83.49 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 83.43 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 83.01 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 82.87 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 82.86 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 82.29 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 82.27 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 82.14 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 82.09 | |
| PF05266 | 190 | DUF724: Protein of unknown function (DUF724); Inte | 81.83 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 80.55 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 80.25 |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=181.52 Aligned_cols=135 Identities=24% Similarity=0.320 Sum_probs=124.9
Q ss_pred cccceEEEEEeeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEE
Q 001085 11 KNKIKAVFKLQFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFI 90 (1160)
Q Consensus 11 K~kiKvvFKLqFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfV 90 (1160)
|++.|+.|.|.+|..+.....|..++|++--++.+++.+.|..+.|.+|.|.|++++..+++|..|.++++|++|+|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 56889999999998885444899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC--CCcccccceeecchhhhhhhc-CcceeeccccCC-CCCceeeEeeeeeccccc
Q 001085 91 VSTG--LSKAGFVGEASIDFADYAEAS-KTSTVSLPLKYS-RSKAVLHVSIQRVQENVD 145 (1160)
Q Consensus 91 VSmG--SSKSgiLGEasINlAdYaea~-kp~tVSLPLK~c-nsGtVLHVtIQ~Lt~k~~ 145 (1160)
|.++ +.+..+||.++||||+||+.. +|.++.+||+.| ..+|+|||+|++..-++.
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9976 666689999999999999996 999999999999 999999999999876554
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG1937 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF06705 SF-assemblin: SF-assemblin/beta giardin | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 2e-20
Identities = 91/630 (14%), Positives = 197/630 (31%), Gaps = 170/630 (26%)
Query: 310 DLSELE------LQTLRKQIVK--ESKRAQDLSREVISLKEEKDLLKLDCEK-------- 353
+ E + L V + K QD+ + ++S +E ++
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 354 -LKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQE--------LSYEKDLNANLRLQ--- 401
L + Q+ M + V L + + L+ I+ E Y + + RL
Sbjct: 70 TLLSKQEEMVQKFVEEVL--RINYKF-LMSPIKTEQRQPSMMTRMYIEQRD---RLYNDN 123
Query: 402 --LQKTQESNAELILAVQD-LDEMLEQKNREISNH----SNKS---GSYVNAKELRRN-- 449
K S + L ++ L E+ + + + S K+ + +++
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 450 -----ISKSQTDDDEDQKALEELVKEHRDVKETYLLEQKIMD-LYSEIE-IYRRDKDELE 502
++ + E LE L K + + + I I + L+
Sbjct: 182 FKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 503 TQMEQLAL-------DYEILKQENHDISYKL----EQSQLQEQLKMQYECS-SIGNGSEP 550
++ + L + + ++S K+ Q+ + L S+ + S
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 551 ETQVESLE---NELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNF-QATIKEL 606
T E L + +DL + N + +A ++ + N+ +L
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 607 ESQIEALGNELK--EQSKGYSDSLA--------TIKELEAYIKNLEEE------------ 644
+ IE+ N L+ E K + D L+ L ++ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 645 --LEKQAQ---VYEADLEVVTRAKVEQE----QRAIQAEETLRKTR-------------- 681
+EKQ + + + + + K+E E + + +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 682 ------LKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQK-RHLEEMI 734
LKN ER+ FR + + F L QK RH
Sbjct: 475 SHIGHHLKNIEHPERM-TLFRMVFLDF--RF----------------LE-QKIRHDSTAW 514
Query: 735 NKASEEALSLRD--DYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSG 792
N + +L+ Y+ +C + E+++ I + ++EE +
Sbjct: 515 NASGSILNTLQQLKFYKPYICD-------NDPKYERLVNAILDFLPKIEENLICSKY--- 564
Query: 793 ALSLEIQQLKADTEKLMMDNKSLSEEAEQK 822
++ ++ LM +++++ EEA ++
Sbjct: 565 ---TDLLRI-----ALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1160 | |||
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.14 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.12 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.07 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.04 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.67 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.11 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.82 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.3 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 95.09 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.57 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.78 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 93.63 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 90.84 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 85.05 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 83.76 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 80.72 |
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-06 Score=106.10 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHH
Q 001085 305 LARQADLSELELQTLRKQIVK 325 (1160)
Q Consensus 305 L~Rqad~s~lELQtLRKQi~k 325 (1160)
+..-+.+++.+...|.+-|..
T Consensus 383 ~~~~a~lLg~~~~~l~~~l~~ 403 (1184)
T 1i84_S 383 AQKVCHLMGINVTDFTRSILT 403 (1184)
T ss_dssp HHHHHHHTTSCHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHhcC
Confidence 445556666666666666653
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1160 | |||
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 90.44 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 84.94 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.19 Score=44.54 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=63.5
Q ss_pred eeeeeccccccc------cceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe-c
Q 001085 21 QFHATQVAQLGE------NALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-T 93 (1160)
Q Consensus 21 qFhATQVPq~gw------DkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-m 93 (1160)
-.+|..+|..++ .-=||.+--...+..+.| ++..-.+.+..|... ..|.-++.. ....+|.|- .
T Consensus 9 v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~-T~~~~~t~nP~wne~----f~f~i~~~~----~~~L~v~V~d~ 79 (126)
T d1rlwa_ 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR-TRHFNNDINPVWNET----FEFILDPNQ----ENVLEITLMDA 79 (126)
T ss_dssp EEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEE-CCCCTTCSSCEEEEE----EEEEECTTS----CCEEEEEEEEC
T ss_pred EEEccCCCCccccccCCCCCcEEEEEECCcccceeE-eeecCCCccceecee----eeecccCcc----cCcEEEEEEEC
Confidence 457888986432 222554432222222222 222223445667543 233222211 123455554 3
Q ss_pred CCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeeeeec
Q 001085 94 GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQRVQ 141 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ~Lt 141 (1160)
+..+..+||++.|+|+++.. -.+..+.+||+....|. +|++++.+.
T Consensus 80 d~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~~~g~-i~~~l~~~~ 125 (126)
T d1rlwa_ 80 NYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQVTEMV-LEMSLEVAS 125 (126)
T ss_dssp CSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETTTEEEE-EEEEEECCC
T ss_pred CCCCCCeEEEEEEEHHHccC-CCeEEEEEEccCCCeEE-EEEEEEEEe
Confidence 55567899999999999854 67888999999876554 499888764
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| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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