Citrus Sinensis ID: 001086
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1159 | ||||||
| 224131970 | 1152 | predicted protein [Populus trichocarpa] | 0.976 | 0.982 | 0.649 | 0.0 | |
| 255567182 | 1120 | hypothetical protein RCOM_1211540 [Ricin | 0.949 | 0.982 | 0.635 | 0.0 | |
| 359494654 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.961 | 0.965 | 0.610 | 0.0 | |
| 297736146 | 1188 | unnamed protein product [Vitis vinifera] | 0.964 | 0.941 | 0.598 | 0.0 | |
| 324388022 | 1116 | sequence-specific DNA-binding transcript | 0.851 | 0.884 | 0.573 | 0.0 | |
| 356527716 | 1164 | PREDICTED: uncharacterized protein LOC10 | 0.870 | 0.866 | 0.590 | 0.0 | |
| 356511419 | 1108 | PREDICTED: uncharacterized protein LOC10 | 0.904 | 0.945 | 0.570 | 0.0 | |
| 221222542 | 1156 | putative protein [Coffea canephora] | 0.855 | 0.858 | 0.552 | 0.0 | |
| 326367377 | 1156 | sequence-specific DNA binding protein [C | 0.855 | 0.858 | 0.550 | 0.0 | |
| 334186462 | 1131 | Homeodomain-like transcriptional regulat | 0.947 | 0.970 | 0.527 | 0.0 |
| >gi|224131970|ref|XP_002321223.1| predicted protein [Populus trichocarpa] gi|222861996|gb|EEE99538.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1466 bits (3796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/1154 (64%), Positives = 891/1154 (77%), Gaps = 22/1154 (1%)
Query: 3 VKRKTPLQAKALLKFYS-EEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
+KRK+PLQ +ALLKFY+ E+KYP++ ME LA +LT+KQVR WFIEKRR +K N ++
Sbjct: 1 MKRKSPLQLQALLKFYAAEDKYPSQRAMEDLAVVSNLTFKQVRGWFIEKRRSEKSKNELI 60
Query: 62 IPSSSSKKLKGFHGRNRLGVVS-AKIVKKQDSLIHN-------------KHLSLMVCNGT 107
P +KKL F GR V S A+ + KQ L + KH V
Sbjct: 61 EPPRLTKKLSVFKGRKGAAVASDARKMLKQLELSASSTDKSNKPSSSKYKHAPSEVQGRI 120
Query: 108 GKKKNAVTVLQDLLTSDYILKKVFRKDGPPLGVEFDSLPSQAFFRSKDSINSCPPLQENQ 167
GK+K + ++QDLLTSDYIL K+FRKDGPPLG+EFDS P++AF +D NS P QENQ
Sbjct: 121 GKRKKKLVLVQDLLTSDYILGKIFRKDGPPLGLEFDSPPTRAFHGCEDFRNSHPAHQENQ 180
Query: 168 TAKRKRKVSIHDELDHQECCTNTDHVRKHGMGKGLMTAWRVMNPNGGTVPTGIDVADRQV 227
A ++ KVS+ D Q C + V+KHGMGKGLMT WRV NP+GG PTGI Q+
Sbjct: 181 RANKRGKVSMCAAFDDQNC-NESAPVKKHGMGKGLMTVWRVTNPDGGDFPTGIHCGGSQI 239
Query: 228 TVVPQMATPLSQKPPL-RKKRAQQIVSLLKQRRLANNLQSKRKPVAKGKQVKLDKGERLR 286
TV PQ++TP+ +K PL +KKR + SL+KQR L LQ KRKP K ++V+ + E +
Sbjct: 240 TVTPQISTPVPRKQPLQKKKRRPPVSSLVKQRMLQKELQEKRKPSVKRREVESKRDEIQK 299
Query: 287 QPNKEKCELAPDSVISQERLDQIAMLVDDEELELRELEVGPNPPTCCDHISTKGLHGCSL 346
Q +EKCELA + +++QERL+Q AMLVDDEELELREL GPNP TC +H + L GCSL
Sbjct: 300 QSFREKCELALERLMNQERLNQFAMLVDDEELELRELRAGPNPLTCTEHFAANRLFGCSL 359
Query: 347 CRDLLAKFPPNSVKMKQPFGTQPWDSSPETVKKLFKVFHFLCTYAGIVDICSFTLDEFAQ 406
C+DLL KFPPNSVK+KQPF QPWDSSPE VKKLFKVFHFL TY+ VDIC FTLDE AQ
Sbjct: 360 CKDLLVKFPPNSVKLKQPFAMQPWDSSPEAVKKLFKVFHFLYTYSVTVDICPFTLDELAQ 419
Query: 407 AFHDKDSMLLGKIHVALLKLLLSDVEMELGRGCPPHLSVSCKFLALLHSVENQEFFVEFW 466
AFHDKDS LLGKIHVALLKLLLSDVE E+ G PHLS+SCKFLALLHSVE+QEF VEFW
Sbjct: 420 AFHDKDSFLLGKIHVALLKLLLSDVETEISSGLLPHLSISCKFLALLHSVEDQEFVVEFW 479
Query: 467 NKSLNPLTWTEILRQVLVAAGFGSKQGSSRKESLSKEMILMLKYGLRPGTLKGELFRILL 526
SLNPLTWTEIL QVL+AAGFGSKQG R+E LSKEM LM+KYGL PGTLKGELF++L
Sbjct: 480 KNSLNPLTWTEILCQVLIAAGFGSKQGGFRREVLSKEMSLMVKYGLHPGTLKGELFQLLS 539
Query: 527 EQGNNGSKVCQLARSSQIAELNLESTTEEVELLISSTLSSDITLFEKIASSTYRLRINT- 585
QGNNG KV LA+SSQI ELNL TT+E+ELLI STLSSDITLFEKI+SST+RLRINT
Sbjct: 540 VQGNNGLKVSDLAKSSQIVELNLAGTTDELELLICSTLSSDITLFEKISSSTFRLRINTL 599
Query: 586 SKEADDFESDAEDIGSVDDNSDDDDTCSNRDDSECNSENQRQRRPKYLNCCKSENNMLTV 645
+KEA F+SD ED G V ++ D+ S+ +S+C+SEN R K ++ K +N MLT
Sbjct: 600 AKEASGFQSDTEDSGIVHEDFHDNGA-SSSSNSDCDSENSSPRNLKLIDYPKRKNKMLTF 658
Query: 646 YMEIDESHRGDVWLSGLMEGEYSDLTIDEKLNALVGLIDLVSAGSSIRMEDPTKAIAESV 705
EIDES G+VWL GLMEGEYSDL+I+EKLN LV LIDLVSAGSSIR+ED K ESV
Sbjct: 659 ENEIDESRPGEVWLLGLMEGEYSDLSIEEKLNGLVALIDLVSAGSSIRLEDLAKPTVESV 718
Query: 706 PSVRHYGSGAKIKRALPNQHSLPRPSWVHAGDFHGVRETNTSRELHPLDSFSLISKSCGK 765
P++ H+ SGAKIKR+ + ++PRPSWVHAG + +E TS + P+DS L SK GK
Sbjct: 719 PNIYHHCSGAKIKRSSSTKDNVPRPSWVHAGQINVTKEAYTSSKFFPVDSSVLFSKFDGK 778
Query: 766 EK-SSSVKDAKATEVSTDLHPMQSIYLGSDRRYNRYWLFLGPCNEYDPGHKRVYFESSED 824
+K S K+ + + +LHPMQSI+LGSDRRYNRYWLFLGPCN YDPGHKRVYFESSED
Sbjct: 779 DKLSGKEKETEGMGLEINLHPMQSIFLGSDRRYNRYWLFLGPCNSYDPGHKRVYFESSED 838
Query: 825 GHWEVIDTEEALRALLSVLDDRGRQEALLIESLEKREAFLCQAMSSGLVNNTEIRHVAQS 884
GHWEVIDTEEALRALLSVLDDRGR+EALLIESLEKRE FLCQ MSS +VN++ + + QS
Sbjct: 839 GHWEVIDTEEALRALLSVLDDRGRREALLIESLEKRETFLCQEMSSKMVNDSGVGYFTQS 898
Query: 885 DQSELDLVREDSSSPVSDVDNNLALSEIGKESLPSCGAIVLDVGKKGEEQHRMWSRLQEF 944
DQSEL+ VREDSSSPVSDVDNNL L++I +SLP AIVL+ GKKG+E+++ W+RL++F
Sbjct: 899 DQSELETVREDSSSPVSDVDNNLTLTDIANDSLPPMSAIVLETGKKGKEENQKWNRLRQF 958
Query: 945 DAWIWNSFYLNLNAVKHGKRSYLDALARCERCHDLYWRDEKHCKICHTTFELDFDLEERY 1004
D WIWN FY +LNAVK KRSYL++L RCE CHDLYWRDEKHCKICHTTFELDFDLEERY
Sbjct: 959 DTWIWNCFYCDLNAVKRSKRSYLESLRRCETCHDLYWRDEKHCKICHTTFELDFDLEERY 1018
Query: 1005 AVHAATCRGKGDHLV-SKHKILSSQLQSLKAAVHAIESVMPEDALVGAWTKSAHKLWVKR 1063
A+H+ATCR K D+++ KHK+LSS+LQSLKAAV+AIE+VMPEDALVGAWTKSAH+LWV+R
Sbjct: 1019 AIHSATCRQKEDNVMCPKHKVLSSKLQSLKAAVYAIETVMPEDALVGAWTKSAHRLWVRR 1078
Query: 1064 LRRTSSLAELLQVVADFVSAINEGWLYQWNV-QIADTVMGEIIAFFPTMPQTSSALALWL 1122
LRRTSSLAELLQVVADFV+AINE WL Q N+ Q + T M EII FPTMPQTSSALALWL
Sbjct: 1079 LRRTSSLAELLQVVADFVAAINEDWLCQCNLAQGSSTYMEEIITCFPTMPQTSSALALWL 1138
Query: 1123 VKLDAIIAPYLERV 1136
+KLD +I+PYLE++
Sbjct: 1139 MKLDELISPYLEKI 1152
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567182|ref|XP_002524572.1| hypothetical protein RCOM_1211540 [Ricinus communis] gi|223536125|gb|EEF37780.1| hypothetical protein RCOM_1211540 [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359494654|ref|XP_002263797.2| PREDICTED: uncharacterized protein LOC100241125 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297736146|emb|CBI24184.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|324388022|gb|ADY38784.1| sequence-specific DNA-binding transcription factor [Coffea arabica] | Back alignment and taxonomy information |
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| >gi|356527716|ref|XP_003532454.1| PREDICTED: uncharacterized protein LOC100792062 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356511419|ref|XP_003524424.1| PREDICTED: uncharacterized protein LOC100802783 [Glycine max] | Back alignment and taxonomy information |
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| >gi|221222542|gb|ABZ89177.1| putative protein [Coffea canephora] | Back alignment and taxonomy information |
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| >gi|326367377|gb|ADZ55295.1| sequence-specific DNA binding protein [Coffea arabica] | Back alignment and taxonomy information |
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| >gi|334186462|ref|NP_193011.5| Homeodomain-like transcriptional regulator [Arabidopsis thaliana] gi|332657775|gb|AEE83175.1| Homeodomain-like transcriptional regulator [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1159 | ||||||
| TAIR|locus:2032505 | 1705 | HB-1 "homeobox-1" [Arabidopsis | 0.193 | 0.131 | 0.353 | 9.6e-71 | |
| TAIR|locus:2167628 | 1694 | RLT2 "RINGLET 2" [Arabidopsis | 0.122 | 0.083 | 0.442 | 2.4e-64 |
| TAIR|locus:2032505 HB-1 "homeobox-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 313 (115.2 bits), Expect = 9.6e-71, Sum P(6) = 9.6e-71
Identities = 83/235 (35%), Positives = 119/235 (50%)
Query: 264 LQSKRKPVAKGKQVKLDKGERLRQPNKEKCELAPDSVISQERLDQIAMXXXXXXXXXXXX 323
LQ + + K KQ + E+ K E A I++E +D I
Sbjct: 443 LQRENERAEKKKQKDEIRREKDAIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAIS 502
Query: 324 XXGPNPPTCCDHISTKGLHGCSLCRDLLAKFPPNSVKMKQPFGTQPWDSSPETVKKLFKV 383
P+ DH + + L + RD L+ FPP S+++K PF PW S ETV L V
Sbjct: 503 KGLPSVLQL-DHDTLQNLE---VYRDSLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMV 558
Query: 384 FHFLCTYAGIVDICSFTLDEFAQAFHDKDSMLLGKIHVALLKLLLSDVEMEL-----GRG 438
+ FL +++ ++D+ FTLDEF QAFHD DS LLG+IHV LL+ ++ DVE G G
Sbjct: 559 WRFLISFSDVLDLWPFTLDEFIQAFHDYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIG 618
Query: 439 CPPHLSVSCK--FLALLHSVENQEFFVEFWNKSLNPLTWTEILRQVLVAAGFGSK 491
+ + + + ++ F + W K LNPLTW EILRQ+ ++AGFG K
Sbjct: 619 NNQYTTANPEGGHPQIVEGAYAWGFDIRSWKKHLNPLTWPEILRQLALSAGFGPK 673
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| TAIR|locus:2167628 RLT2 "RINGLET 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1159 | |||
| pfam02791 | 61 | pfam02791, DDT, DDT domain | 2e-13 | |
| cd00086 | 59 | cd00086, homeodomain, Homeodomain; DNA binding dom | 6e-11 | |
| smart00389 | 57 | smart00389, HOX, Homeodomain | 1e-10 | |
| pfam00046 | 57 | pfam00046, Homeobox, Homeobox domain | 7e-09 | |
| smart00571 | 63 | smart00571, DDT, domain in different transcription | 2e-07 | |
| pfam05920 | 40 | pfam05920, Homeobox_KN, Homeobox KN domain | 1e-04 |
| >gnl|CDD|202398 pfam02791, DDT, DDT domain | Back alignment and domain information |
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Score = 65.7 bits (161), Expect = 2e-13
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 375 ETVKKLFKVFHFLCTYAGIVDICSFTLDEFAQAFHDKDS-MLLGKIHVALLKLLLSDVE 432
E L V+ FL T+ ++ + FTLD+F +A DS LLG++H+ALLKLL++D E
Sbjct: 2 EAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEE 60
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This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61 |
| >gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
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| >gnl|CDD|197696 smart00389, HOX, Homeodomain | Back alignment and domain information |
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| >gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain | Back alignment and domain information |
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| >gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
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| >gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1159 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 99.62 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 99.51 | |
| KOG0484 | 125 | consensus Transcription factor PHOX2/ARIX, contain | 99.34 | |
| KOG0843 | 197 | consensus Transcription factor EMX1 and related HO | 99.24 | |
| KOG0489 | 261 | consensus Transcription factor zerknullt and relat | 99.22 | |
| KOG0488 | 309 | consensus Transcription factor BarH and related HO | 99.22 | |
| KOG2251 | 228 | consensus Homeobox transcription factor [Transcrip | 99.21 | |
| KOG0850 | 245 | consensus Transcription factor DLX and related pro | 99.18 | |
| KOG0842 | 307 | consensus Transcription factor tinman/NKX2-3, cont | 99.17 | |
| KOG0487 | 308 | consensus Transcription factor Abd-B, contains HOX | 99.1 | |
| KOG0492 | 246 | consensus Transcription factor MSH, contains HOX d | 99.09 | |
| KOG0494 | 332 | consensus Transcription factor CHX10 and related H | 99.08 | |
| KOG0485 | 268 | consensus Transcription factor NKX-5.1/HMX1, conta | 99.06 | |
| PF00046 | 57 | Homeobox: Homeobox domain not present here.; Inter | 99.05 | |
| KOG0848 | 317 | consensus Transcription factor Caudal, contains HO | 99.02 | |
| KOG0493 | 342 | consensus Transcription factor Engrailed, contains | 98.94 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 98.93 | |
| KOG0844 | 408 | consensus Transcription factor EVX1, contains HOX | 98.91 | |
| smart00389 | 56 | HOX Homeodomain. DNA-binding factors that are invo | 98.88 | |
| KOG0491 | 194 | consensus Transcription factor BSH, contains HOX d | 98.86 | |
| TIGR01565 | 58 | homeo_ZF_HD homeobox domain, ZF-HD class. This mod | 98.86 | |
| KOG0483 | 198 | consensus Transcription factor HEX, contains HOX a | 98.85 | |
| cd00086 | 59 | homeodomain Homeodomain; DNA binding domains invol | 98.84 | |
| KOG0486 | 351 | consensus Transcription factor PTX1, contains HOX | 98.82 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 98.82 | |
| COG5576 | 156 | Homeodomain-containing transcription factor [Trans | 98.79 | |
| KOG0847 | 288 | consensus Transcription factor, contains HOX domai | 98.68 | |
| KOG4577 | 383 | consensus Transcription factor LIM3, contains LIM | 98.5 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 98.45 | |
| KOG3802 | 398 | consensus Transcription factor OCT-1, contains POU | 98.43 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.36 | |
| KOG0849 | 354 | consensus Transcription factor PRD and related pro | 98.12 | |
| KOG0775 | 304 | consensus Transcription factor SIX and related HOX | 97.74 | |
| PF05066 | 72 | HARE-HTH: HB1, ASXL, restriction endonuclease HTH | 97.61 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 97.47 | |
| KOG1168 | 385 | consensus Transcription factor ACJ6/BRN-3, contain | 97.42 | |
| KOG0774 | 334 | consensus Transcription factor PBX and related HOX | 97.02 | |
| PF05920 | 40 | Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 | 96.77 | |
| KOG2252 | 558 | consensus CCAAT displacement protein and related h | 96.55 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 96.07 | |
| KOG1146 | 1406 | consensus Homeobox protein [General function predi | 93.22 | |
| PF11569 | 56 | Homez: Homeodomain leucine-zipper encoding, Homez; | 83.97 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=346.28 Aligned_cols=299 Identities=23% Similarity=0.262 Sum_probs=224.6
Q ss_pred CCCCCCCCCChhHHHhHHHHHHHHhhccccccccCCCHHHHHHHhc-cCCcchHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 001086 364 PFGTQPWDSSPETVKKLFKVFHFLCTYAGIVDICSFTLDEFAQAFH-DKDSMLLGKIHVALLKLLLSDVEMELGRGCPPH 442 (1159)
Q Consensus 364 p~~~~p~~~s~e~V~~LL~Vw~FL~~F~~vL~L~pFTlDDFv~Al~-d~ds~LL~EIH~aLLk~ii~d~Ed~~~~~~~~~ 442 (1159)
|-+.....++.++|.++|+||+|||+|+.+|.|+||+|+|||+||. ..+|.||+||||||||+|+++ ||..++.+++.
T Consensus 179 P~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHvaLLrA~lr~-eD~~~Thfs~~ 257 (1414)
T KOG1473|consen 179 PESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVALLRALLRE-EDRLSTHFSPL 257 (1414)
T ss_pred CCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHHHHHHHhhh-hhhcccccCcc
Confidence 3333444455799999999999999999999999999999999998 899999999999999999999 78888888887
Q ss_pred CCcchhhhhhhhhhcchhhhhHhhhhcCCCCcHHHHHHHHHHHhcC--CCCccchhhhhhhHHHHHHHhhccccccchhh
Q 001086 443 LSVSCKFLALLHSVENQEFFVEFWNKSLNPLTWTEILRQVLVAAGF--GSKQGSSRKESLSKEMILMLKYGLRPGTLKGE 520 (1159)
Q Consensus 443 ~~~~~~~~~~~~~v~~~~~~i~~w~~~Ln~lTWpEiLrq~~~~aG~--gp~~~~~~~~~~~~~~~~m~~~~L~pgTvK~a 520 (1159)
..+++ |+.- -.++|.||||||||||+-|.|+ ||.|..++.
T Consensus 258 d~Kds--------vnI~-------l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~----------------------- 299 (1414)
T KOG1473|consen 258 DSKDS--------VNID-------LYLIDTLTWPEVLRQYFEADKHADGPVWDIFNP----------------------- 299 (1414)
T ss_pred ccccc--------eeee-------eehhccccHHHHHHHHHHhccccCcchhhhhcc-----------------------
Confidence 77776 3432 2458899999999999988766 555543220
Q ss_pred HHHHHHhhCCCCCchhHhhhhhhhhhhccccchHHHHHhhhhccccchhhhhhhccccceeccccCCCcCccCCcccccC
Q 001086 521 LFRILLEQGNNGSKVCQLARSSQIAELNLESTTEEVELLISSTLSSDITLFEKIASSTYRLRINTSKEADDFESDAEDIG 600 (1159)
Q Consensus 521 af~vLs~~g~~gl~v~e~a~~iQk~~lr~l~tsk~~ea~i~~~LsrD~~LFer~apsty~vr~~~~k~~~d~esd~ed~~ 600 (1159)
T Consensus 300 -------------------------------------------------------------------------------- 299 (1414)
T KOG1473|consen 300 -------------------------------------------------------------------------------- 299 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHHH
Q 001086 601 SVDDNSDDDDTCSNRDDSECNSENQRQRRPKYLNCCKSENNMLTVYMEIDESHRGDVWLSGLMEGEYSDLTIDEKLNALV 680 (1159)
Q Consensus 601 ~vded~d~~~~~~~~~~~e~~~~~~~~~~~~~~~~~K~~~~~~~~~~eIDEs~~ge~wl~~L~egeY~dLsiEERL~aLv 680 (1159)
=+.+.+|....|+.||++|.
T Consensus 300 ------------------------------------------------------------fv~~~eY~~~pv~~klkILQ 319 (1414)
T KOG1473|consen 300 ------------------------------------------------------------FVVEDEYPYRPVSNKLKILQ 319 (1414)
T ss_pred ------------------------------------------------------------ccccccccccchhhhHHHHH
Confidence 02345899999999999999
Q ss_pred HHHhhhccCCcccccchhhhhhhc--cccccccCccccccccCccccCCCCCCCCCCCCCCCccccccccCCCCCChhhh
Q 001086 681 GLIDLVSAGSSIRMEDPTKAIAES--VPSVRHYGSGAKIKRALPNQHSLPRPSWVHAGDFHGVRETNTSRELHPLDSFSL 758 (1159)
Q Consensus 681 aL~~l~l~g~sIR~~d~~r~~~E~--~~k~~~~~~~~~~K~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~~~~ 758 (1159)
+||++++..+++|.+...+-.-+. .=|.. + ......+. -+++.+.+.+|+.+ +.+.+....+
T Consensus 320 ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~-~---------d~~~~lc~----Et~prvvhlEcv~h--P~~~~~s~~~ 383 (1414)
T KOG1473|consen 320 FLCDQFLTVNSLRDEIDSEGEIEYDDHCRFC-H---------DLGDLLCC----ETCPRVVHLECVFH--PRFAVPSAFW 383 (1414)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeccccccc-C---------cccceeec----ccCCceEEeeecCC--ccccCCCccc
Confidence 999999999999993221100000 00000 0 00000000 11244445555544 4455666778
Q ss_pred hhhhcccccccchhhHhhhhhhhhcCCcccccCcccCCCCeeEEEeCCCCCCCCCCcceEEecCCCCcEEEecCHHHHHH
Q 001086 759 ISKSCGKEKSSSVKDAKATEVSTDLHPMQSIYLGSDRRYNRYWLFLGPCNEYDPGHKRVYFESSEDGHWEVIDTEEALRA 838 (1159)
Q Consensus 759 ~~~~~~~ek~~~~~krEe~~~a~e~~~~R~~pLG~DR~~nRYW~F~~~~~~~dp~~grifVE~~~~g~W~~ydt~eeld~ 838 (1159)
++.+|..+|..+..+.- ....+....+|..|+|.||+++.||+.. +||+||+.+...-+||+|.-++..
T Consensus 384 e~evc~~hkvngvvd~v-l~~~K~~~~iR~~~iG~dr~gr~ywfi~----------rrl~Ie~~det~l~yysT~pqly~ 452 (1414)
T KOG1473|consen 384 ECEVCNIHKVNGVVDCV-LPPSKNVDSIRHTPIGRDRYGRKYWFIS----------RRLRIEGMDETLLWYYSTCPQLYH 452 (1414)
T ss_pred hhhhhhhhccCcccccc-cChhhcccceeccCCCcCccccchhcee----------eeeEEecCCCcEEEEecCcHHHHH
Confidence 88888777777655221 1112345558999999999999999998 899999988888889999999999
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHHHHHHh
Q 001086 839 LLSVLDDRGRQEALLIESLEKREAFLCQAMS 869 (1159)
Q Consensus 839 Ll~~Ld~rG~RE~~Lk~~L~~~~~~I~~~m~ 869 (1159)
||..|| |.+=|..|...|..+.+.|..+|.
T Consensus 453 ll~cLd-~~~~e~~L~d~i~~~~ee~~rqM~ 482 (1414)
T KOG1473|consen 453 LLRCLD-RTYVEMYLCDGIWERREEIIRQMG 482 (1414)
T ss_pred HHHHhc-hHHHHHhhccchhhhHHHHHHhcc
Confidence 999999 777799999999999999999995
|
|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2251 consensus Homeobox transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0485 consensus Transcription factor NKX-5 | Back alignment and domain information |
|---|
| >PF00046 Homeobox: Homeobox domain not present here | Back alignment and domain information |
|---|
| >KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >smart00389 HOX Homeodomain | Back alignment and domain information |
|---|
| >KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class | Back alignment and domain information |
|---|
| >KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] | Back alignment and domain information |
|---|
| >cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >COG5576 Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0847 consensus Transcription factor, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] | Back alignment and domain information |
|---|
| >KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1146 consensus Homeobox protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 5e-15
Identities = 83/632 (13%), Positives = 182/632 (28%), Gaps = 193/632 (30%)
Query: 578 TYR--LRINTSKEADDFE-SDAEDI-GSVDDNSDDDDTCSNRDDSECNSENQRQRRPKYL 633
Y+ L + D+F+ D +D+ S+ + D ++D R +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS------GTLRLFWT 70
Query: 634 NCCKSENNMLTVYMEIDESHRGDV-WLSGLMEGEYSDLTIDEKLNALVGLIDLVSAGSSI 692
K E V ++E R + +L ++ E ++ ++ I+
Sbjct: 71 LLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQRD----- 117
Query: 693 RM-EDPTKAIAESVPSVRHYGSGAKIKRALPNQHSLPRPS-WVHAGDFHGVRETNTSREL 750
R+ D +V ++ Y K+++AL RP+ V GV
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY---LKLRQALLEL----RPAKNV---LIDGV--------- 158
Query: 751 HPLDSFSLISKSCGKEKSSSVKDAKATEVSTDLHPMQSIYLGSDRRYNR-YWLFLGPCNE 809
GK + V A +V + +Q + + +WL L CN
Sbjct: 159 ----------LGSGK---TWV----ALDVCLS-YKVQ------CKMDFKIFWLNLKNCNS 194
Query: 810 YD---------------PGHKRVYFESSEDGHWEVIDTEEALRALLSVLDDRGRQEALLI 854
+ R + S + + + LR LL + + LL+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLK---SKPYENCLLV 249
Query: 855 ----ESLEKREAFL--CQAMSSGLVNNTEIRHVAQSDQSELDLVREDSSSPVSDVDNNLA 908
++ + AF C+ + + + D + +++ +S +++
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL------------LTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 909 LSE------------IGKESLPS--CGAIVLDVGKKGEEQHRMWSRLQEFDAWIWNSFYL 954
L+ + LP + E + + ++
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-------HV 350
Query: 955 NLNAVKHGKRSYLDALARCE--RCHD-----------------LYWRD------EKHCKI 989
N + + S L+ L E + D L W D
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 990 CHTTFELDFDLEE-RYAVHAATC--RGKGDHLVSKHKILSSQLQSLKAAVHAIESVMPED 1046
H ++ +E ++ + + K ++ + H+ + K D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 1047 A---------LVGAWTKSAHKL-----------WVKR-LRRT-------SSLAELLQVVA 1078
L + ++ ++++ +R S+ LQ +
Sbjct: 471 QYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 1079 DFVSAINEGWLYQWNVQIADTVMGEIIAFFPT 1110
+ I + N + ++ I+ F P
Sbjct: 529 FYKPYICD------NDPKYERLVNAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 | Back alignment and structure |
|---|
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
| >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 | Back alignment and structure |
|---|
| >1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 | Back alignment and structure |
|---|
| >2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1159 | |||
| 3a03_A | 56 | T-cell leukemia homeobox protein 2; homeodomain, d | 99.42 | |
| 2vi6_A | 62 | Homeobox protein nanog; homeodomain, DNA-binding, | 99.39 | |
| 3a02_A | 60 | Homeobox protein aristaless; homeodomain, developm | 99.39 | |
| 2cra_A | 70 | Homeobox protein HOX-B13; DNA-binding, transcripti | 99.38 | |
| 1ahd_P | 68 | Antennapedia protein mutant; DNA binding protein/D | 99.38 | |
| 2hdd_A | 61 | Protein (engrailed homeodomain Q50K); DNA binding, | 99.38 | |
| 2l7z_A | 73 | Homeobox protein HOX-A13; gene regulation; NMR {Ho | 99.38 | |
| 1ig7_A | 58 | Homeotic protein MSX-1; helix-turn-helix, transcri | 99.37 | |
| 2h1k_A | 63 | IPF-1, pancreatic and duodenal homeobox 1, homeodo | 99.37 | |
| 1bw5_A | 66 | ISL-1HD, insulin gene enhancer protein ISL-1; DNA- | 99.36 | |
| 2dmt_A | 80 | Homeobox protein BARH-like 1; homeobox domain, thr | 99.36 | |
| 2djn_A | 70 | Homeobox protein DLX-5; structural genomics, NPPSF | 99.36 | |
| 2da2_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.36 | |
| 1jgg_A | 60 | Segmentation protein EVEN-skipped; homeodomain, pr | 99.36 | |
| 2da5_A | 75 | Zinc fingers and homeoboxes protein 3; homeobox do | 99.35 | |
| 2dn0_A | 76 | Zinc fingers and homeoboxes protein 3; triple home | 99.35 | |
| 2ecc_A | 76 | Homeobox and leucine zipper protein homez; homeobo | 99.35 | |
| 2dmu_A | 70 | Homeobox protein goosecoid; homeobox domain, three | 99.35 | |
| 2kt0_A | 84 | Nanog, homeobox protein nanog; homeodomain, struct | 99.34 | |
| 2dms_A | 80 | Homeobox protein OTX2; homeobox domain, three heli | 99.34 | |
| 2da1_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.34 | |
| 1wh5_A | 80 | ZF-HD homeobox family protein; structural genomics | 99.34 | |
| 1uhs_A | 72 | HOP, homeodomain only protein; structural genomics | 99.33 | |
| 2ly9_A | 74 | Zinc fingers and homeoboxes protein 1; structural | 99.33 | |
| 2da3_A | 80 | Alpha-fetoprotein enhancer binding protein; homeob | 99.33 | |
| 2ecb_A | 89 | Zinc fingers and homeoboxes protein 1; homeobox do | 99.33 | |
| 2hi3_A | 73 | Homeodomain-only protein; transcription; NMR {Mus | 99.33 | |
| 1ftt_A | 68 | TTF-1 HD, thyroid transcription factor 1 homeodoma | 99.33 | |
| 2e1o_A | 70 | Homeobox protein PRH; DNA binding protein, structu | 99.32 | |
| 3rkq_A | 58 | Homeobox protein NKX-2.5; helix-turn-helix, DNA bi | 99.32 | |
| 2k40_A | 67 | Homeobox expressed in ES cells 1; thermostable hom | 99.32 | |
| 2dmq_A | 80 | LIM/homeobox protein LHX9; homeobox domain, three | 99.32 | |
| 1zq3_P | 68 | PRD-4, homeotic bicoid protein; protein-DNA comple | 99.31 | |
| 3a01_A | 93 | Homeodomain-containing protein; homeodomain, prote | 99.31 | |
| 2cue_A | 80 | Paired box protein PAX6; homeobox domain, transcri | 99.31 | |
| 1yz8_P | 68 | Pituitary homeobox 2; DNA binding protein, transcr | 99.31 | |
| 1b8i_A | 81 | Ultrabithorax, protein (ultrabithorax homeotic pro | 99.3 | |
| 1nk2_P | 77 | Homeobox protein VND; homeodomain, DNA-binding pro | 99.3 | |
| 1wh7_A | 80 | ZF-HD homeobox family protein; homeobox domain, st | 99.3 | |
| 2dmp_A | 89 | Zinc fingers and homeoboxes protein 2; homeobox do | 99.3 | |
| 1akh_A | 61 | Protein (mating-type protein A-1); complex (TWO DN | 99.3 | |
| 2r5y_A | 88 | Homeotic protein sex combs reduced; homeodomain; H | 99.3 | |
| 1puf_A | 77 | HOX-1.7, homeobox protein HOX-A9; homeodomian, pro | 99.29 | |
| 2m0c_A | 75 | Homeobox protein aristaless-like 4; structural gen | 99.29 | |
| 1k61_A | 60 | Mating-type protein alpha-2; protein-DNA complex, | 99.29 | |
| 2da4_A | 80 | Hypothetical protein DKFZP686K21156; homeobox doma | 99.29 | |
| 1fjl_A | 81 | Paired protein; DNA-binding protein, paired BOX, t | 99.27 | |
| 1du6_A | 64 | PBX1, homeobox protein PBX1; homeodomain, gene reg | 99.26 | |
| 2cqx_A | 72 | LAG1 longevity assurance homolog 5; homeodomain, D | 99.26 | |
| 2l9r_A | 69 | Homeobox protein NKX-3.1; structural genomics, nor | 99.26 | |
| 3nar_A | 96 | ZHX1, zinc fingers and homeoboxes protein 1; corep | 99.25 | |
| 1b72_A | 97 | Protein (homeobox protein HOX-B1); homeodomain, DN | 99.24 | |
| 1puf_B | 73 | PRE-B-cell leukemia transcription factor-1; homeod | 99.21 | |
| 3nau_A | 66 | Zinc fingers and homeoboxes protein 2; ZHX2, corep | 99.21 | |
| 1le8_B | 83 | Mating-type protein alpha-2; matalpha2, isothermal | 99.21 | |
| 2e19_A | 64 | Transcription factor 8; homeobox domain, structura | 99.2 | |
| 1b72_B | 87 | Protein (PBX1); homeodomain, DNA, complex, DNA-bin | 99.19 | |
| 1x2n_A | 73 | Homeobox protein pknox1; homeobox domain, structur | 99.18 | |
| 1x2m_A | 64 | LAG1 longevity assurance homolog 6; homeobox domai | 99.17 | |
| 1au7_A | 146 | Protein PIT-1, GHF-1; complex (DNA-binding protein | 99.16 | |
| 1mnm_C | 87 | Protein (MAT alpha-2 transcriptional repressor); t | 99.16 | |
| 1e3o_C | 160 | Octamer-binding transcription factor 1; transcript | 99.15 | |
| 2cuf_A | 95 | FLJ21616 protein; homeobox domain, hepatocyte tran | 99.15 | |
| 2xsd_C | 164 | POU domain, class 3, transcription factor 1; trans | 99.14 | |
| 1wi3_A | 71 | DNA-binding protein SATB2; homeodomain, helix-turn | 99.11 | |
| 1lfb_A | 99 | Liver transcription factor (LFB1); transcription r | 99.11 | |
| 2dmn_A | 83 | Homeobox protein TGIF2LX; TGFB-induced factor 2-li | 99.09 | |
| 3d1n_I | 151 | POU domain, class 6, transcription factor 1; prote | 99.09 | |
| 2d5v_A | 164 | Hepatocyte nuclear factor 6; transcription factor, | 99.05 | |
| 3l1p_A | 155 | POU domain, class 5, transcription factor 1; POU, | 99.05 | |
| 3k2a_A | 67 | Homeobox protein MEIS2; homeobox domain, DNA-bindi | 99.05 | |
| 2da6_A | 102 | Hepatocyte nuclear factor 1-beta; homeobox domain, | 99.05 | |
| 2da7_A | 71 | Zinc finger homeobox protein 1B; homeobox domain, | 98.71 | |
| 2lk2_A | 89 | Homeobox protein TGIF1; NESG, structural genomics, | 98.62 | |
| 2nzz_A | 37 | Penetratin conjugated GAS (374-394) peptide; confo | 97.74 | |
| 2h8r_A | 221 | Hepatocyte nuclear factor 1-beta; trasncription fa | 92.58 | |
| 1ic8_A | 194 | Hepatocyte nuclear factor 1-alpha; transcription r | 91.96 |
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-14 Score=122.41 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=51.0
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001086 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 ~TrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~qVqVWFQNRRaK~KR~ 57 (1159)
+|.||..|+..||..|..++||+...|..||..+||++.+|++||||||+|+|++
T Consensus 1 ~T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 1 MTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 6899999999999999999999999999999999999999999999999999985
|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A | Back alignment and structure |
|---|
| >1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A | Back alignment and structure |
|---|
| >2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B | Back alignment and structure |
|---|
| >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A | Back alignment and structure |
|---|
| >2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A | Back alignment and structure |
|---|
| >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1159 | ||||
| d1k61a_ | 60 | a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast | 2e-09 | |
| d2cqxa1 | 59 | a.4.1.1 (A:8-66) LAG1 longevity assurance homolog | 2e-08 | |
| d9anta_ | 56 | a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila | 2e-08 | |
| d1le8a_ | 53 | a.4.1.1 (A:) Mating type protein A1 Homeodomain {B | 3e-08 | |
| d2craa1 | 58 | a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( | 6e-08 | |
| d2cuea1 | 68 | a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H | 8e-08 | |
| d1x2na1 | 62 | a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H | 8e-08 | |
| d1bw5a_ | 66 | a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { | 9e-08 | |
| d2e1oa1 | 57 | a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo | 1e-07 | |
| d1x2ma1 | 52 | a.4.1.1 (A:8-59) Lag1 longevity assurance homolog | 1e-07 | |
| d1fjla_ | 65 | a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila | 1e-07 | |
| d2ecba1 | 76 | a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote | 2e-07 | |
| d1yz8p1 | 60 | a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo | 4e-07 | |
| d1ftta_ | 68 | a.4.1.1 (A:) Thyroid transcription factor 1 homeod | 5e-07 | |
| d1b72a_ | 88 | a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo | 5e-07 | |
| d1p7ia_ | 53 | a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel | 7e-07 | |
| d1jgga_ | 57 | a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( | 7e-07 | |
| d1pufa_ | 77 | a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m | 8e-07 | |
| d1au7a1 | 58 | a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra | 9e-07 | |
| d1pufb_ | 73 | a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 | 1e-06 | |
| d1s7ea1 | 50 | a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M | 2e-06 | |
| d1ig7a_ | 58 | a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu | 2e-06 | |
| d1zq3p1 | 67 | a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl | 6e-06 | |
| d1e3oc1 | 57 | a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( | 7e-06 | |
| d1wh7a_ | 80 | a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha | 1e-05 | |
| d1ocpa_ | 67 | a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus | 2e-05 | |
| d1wi3a_ | 71 | a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom | 2e-05 | |
| d1vnda_ | 77 | a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi | 5e-05 | |
| d1lfba_ | 78 | a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN | 7e-05 | |
| d1uhsa_ | 72 | a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse | 9e-05 | |
| d2cufa1 | 82 | a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM | 2e-04 | |
| d2ecca1 | 76 | a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H | 2e-04 |
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: mat alpha2 Homeodomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (126), Expect = 2e-09
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 4 KRKTPLQAKALLKFYSEEK---YPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
R T + L ++++ Y +E L L+ Q++ W +RR++K
Sbjct: 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57
|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 | Back information, alignment and structure |
|---|
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 | Back information, alignment and structure |
|---|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 | Back information, alignment and structure |
|---|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 | Back information, alignment and structure |
|---|
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1159 | |||
| d9anta_ | 56 | Antennapedia Homeodomain {Drosophila melanogaster | 99.54 | |
| d2craa1 | 58 | Homeobox protein hox-b13 {Human (Homo sapiens) [Ta | 99.51 | |
| d1jgga_ | 57 | Even-skipped homeodomain {Fruit fly (Drosophila me | 99.49 | |
| d1ig7a_ | 58 | Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 | 99.48 | |
| d1p7ia_ | 53 | Engrailed Homeodomain {Drosophila melanogaster [Ta | 99.48 | |
| d2e1oa1 | 57 | Homeobox protein prh {Human (Homo sapiens) [TaxId: | 99.47 | |
| d1zq3p1 | 67 | Homeotic bicoid protein {Fruit fly (Drosophila mel | 99.43 | |
| d1vnda_ | 77 | VND/NK-2 protein {Fruit fly (Drosophila melanogast | 99.43 | |
| d1le8a_ | 53 | Mating type protein A1 Homeodomain {Baker's yeast | 99.41 | |
| d1uhsa_ | 72 | Homeodomain-only protein, Hop {Mouse (Mus musculus | 99.4 | |
| d1ftta_ | 68 | Thyroid transcription factor 1 homeodomain {Rat (R | 99.39 | |
| d1pufa_ | 77 | Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax | 99.39 | |
| d1au7a1 | 58 | Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta | 99.37 | |
| d1fjla_ | 65 | Paired protein {Fruit fly (Drosophila melanogaster | 99.37 | |
| d2cuea1 | 68 | Paired box protein pax6 {Human (Homo sapiens) [Tax | 99.37 | |
| d1yz8p1 | 60 | Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: | 99.36 | |
| d1e3oc1 | 57 | Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId | 99.35 | |
| d1bw5a_ | 66 | Insulin gene enhancer protein isl-1 {Rat (Rattus n | 99.34 | |
| d1b72a_ | 88 | Homeobox protein hox-b1 {Human (Homo sapiens) [Tax | 99.34 | |
| d1ocpa_ | 67 | Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId | 99.34 | |
| d1s7ea1 | 50 | Hepatocyte nuclear factor 6 {Mouse (Mus musculus) | 99.3 | |
| d2cufa1 | 82 | Homeobox-containing protein 1, HMBOX1 (Flj21616) { | 99.27 | |
| d1wi3a_ | 71 | DNA-binding protein SATB2 {Human (Homo sapiens) [T | 99.27 | |
| d2ecba1 | 76 | Zinc fingers and homeoboxes protein 1, ZHX1 {Human | 99.25 | |
| d1lfba_ | 78 | Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat | 99.19 | |
| d2ecca1 | 76 | Homeobox-leucine zipper protein Homez {Human (Homo | 99.19 | |
| d1x2ma1 | 52 | Lag1 longevity assurance homolog 6, LASS6 {Mouse ( | 99.15 | |
| d1wh7a_ | 80 | ZF-HD homeobox protein At4g24660 {Thale cress (Ara | 99.14 | |
| d1pufb_ | 73 | pbx1 {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d2cqxa1 | 59 | LAG1 longevity assurance homolog 5, LASS5 {Mouse ( | 99.05 | |
| d1k61a_ | 60 | mat alpha2 Homeodomain {Baker's yeast (Saccharomyc | 99.02 | |
| d1x2na1 | 62 | Homeobox protein pknox1 {Human (Homo sapiens) [Tax | 98.8 | |
| d2dlqa4 | 27 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 90.02 |
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Antennapedia Homeodomain species: Drosophila melanogaster [TaxId: 7227]
Probab=99.54 E-value=3.6e-16 Score=131.49 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=53.8
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001086 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 ~TrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~qVqVWFQNRRaK~KR~ 57 (1159)
||.||++|+..||..|..++||+...|.+||..+||++++|+|||||||+|+|++
T Consensus 1 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence 7999999999999999999999999999999999999999999999999999985
|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|