Citrus Sinensis ID: 001114
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | 2.2.26 [Sep-21-2011] | |||||||
| Q51UJ9 | 1395 | Autophagy-related protein | N/A | no | 0.387 | 0.320 | 0.205 | 1e-10 |
| >sp|Q51UJ9|ATG11_MAGO7 Autophagy-related protein 11 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG11 PE=3 SV=3 | Back alignment and function desciption |
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Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/531 (20%), Positives = 211/531 (39%), Gaps = 84/531 (15%)
Query: 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76
V I+ +G ++D + + ++ + + I N C+ + P K L +
Sbjct: 5 VLIAHSGQRLQIDTSRLTTLDEFRSAVSRSTSIPQN-----CIIALVPPGKALRPQAIQM 59
Query: 77 DDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYE 136
+ KE+F+++ R+ P SP V LE+ P P A++ P+ + D ++L S++
Sbjct: 60 E-KEIFVYDS-RMTQTGAPGSPFPVK-LEIDLPKPYAITNPPNDIIDT-----RSLESWQ 111
Query: 137 RQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERA-------VEVGRGNLEQYYRVIN 189
FR H + E CE + +E Q A ++ NLE R
Sbjct: 112 DLFRERRVWAHRLS-------EDCEGMEKEAHDQYEAMDNMLSCLDAAVANLESVVRATE 164
Query: 190 QNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSL-QTATCK------------- 235
Y D K + +Q ++DL+ + +++ RS+ + ++ + T K
Sbjct: 165 NKYEDLKKWAATEQTGYNDLVTRWEQNLGLARSIPISAAMVRLMTGKDVTGAKGRPSKQA 224
Query: 236 CLLDFVKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEM 295
L D V + RK + R+F +++ + + E L ++N E
Sbjct: 225 TLEDLVDLDCARKEGRRAPTVLRKFNARIADLE--------KAEGRL-------MQNFEE 269
Query: 296 MIKEHQRFINEQKSIM------QSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPM 349
+ E +R I+ +S+M L +D+ + V++ + S D + A +
Sbjct: 270 LEAEFRRVIS--RSVMGHSQDATQLLQDIQALAGKVENDYRTTMDYSTSTRDLLQA-SKI 326
Query: 350 YDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPV 409
H + HLP + + +L + +N + + +M+ I VS + +Q
Sbjct: 327 AQTHTEKHLPSLHKRALEMDGMLRYAIKARNALALEQAEFMRSIADVSKL----DMQVKS 382
Query: 410 FREAMVRQDDI--FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKRE 467
A+ +++ F L+L+ + Y A AE +RRK + LA +A ++
Sbjct: 383 LINAIAEDEELATFDYLRLIHQVPYMYAAFTAEAIRRKEWFDKVKTDSTTLANEMALFQD 442
Query: 468 VEVRRREEFLK--ANSVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDID 516
E +RR ++ K ++ Y P + D N+ + NLL D
Sbjct: 443 EEAKRRRKWYKTIGDTSYGPESL-----------STDNNVPGLEVNLLGED 482
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Involved in cytoplasm to vacuole transport (Cvt) and pexophagy. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | ||||||
| 255574990 | 1145 | conserved hypothetical protein [Ricinus | 0.985 | 0.993 | 0.754 | 0.0 | |
| 224143908 | 1153 | predicted protein [Populus trichocarpa] | 0.990 | 0.991 | 0.745 | 0.0 | |
| 225445782 | 1158 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.987 | 0.737 | 0.0 | |
| 356498781 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.992 | 0.715 | 0.0 | |
| 224088338 | 1157 | predicted protein [Populus trichocarpa] | 0.993 | 0.990 | 0.716 | 0.0 | |
| 449453950 | 1152 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.990 | 0.690 | 0.0 | |
| 357479969 | 1154 | hypothetical protein MTR_4g130370 [Medic | 0.989 | 0.989 | 0.696 | 0.0 | |
| 15234869 | 1148 | uncharacterized protein [Arabidopsis tha | 0.981 | 0.986 | 0.665 | 0.0 | |
| 147866071 | 950 | hypothetical protein VITISV_042065 [Viti | 0.810 | 0.984 | 0.734 | 0.0 | |
| 50252083 | 1140 | unknown protein [Oryza sativa Japonica G | 0.948 | 0.960 | 0.521 | 0.0 |
| >gi|255574990|ref|XP_002528401.1| conserved hypothetical protein [Ricinus communis] gi|223532189|gb|EEF33994.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1767 bits (4576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1162 (75%), Positives = 998/1162 (85%), Gaps = 25/1162 (2%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
M+ SITE VHEGKLLV+++ENGHSFELDC+E + VEAVMR+IES + INFN+QLVLCLD
Sbjct: 1 MNSSITEGSVHEGKLLVYVAENGHSFELDCDETTLVEAVMRYIESVSEINFNEQLVLCLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHP 120
MKLEPQ+ LSAY+LPS D+EVFIFN+ RLQ+NSP P+PEQ+D+LEVADPP P + DPHP
Sbjct: 61 MKLEPQRPLSAYKLPSSDREVFIFNRTRLQNNSPSPAPEQIDILEVADPPSPGCTHDPHP 120
Query: 121 LDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
LDDA DPALKALPSYERQFRYHYHRGHAIY RT AK CER LREQKVQ RA++V RGN
Sbjct: 121 LDDALDPALKALPSYERQFRYHYHRGHAIYGRTHAKYAHCERFLREQKVQGRAIDVARGN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
L+QYYR+I+QNY++FMKRY+QQ R+HS+LL N+ RD+EKLRS+KLHP+LQ T CL+DF
Sbjct: 181 LDQYYRMISQNYSEFMKRYTQQHRMHSELLVNYRRDLEKLRSIKLHPALQATTRTCLVDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKEE+LRK+ E CS+SHRQFE KVS+FKQ+F +VKR+VE+L RAS P+KNLE+ IKEH
Sbjct: 241 VKEENLRKAVENCSNSHRQFEKKVSEFKQMFGEVKRKVEDLFACRASFPLKNLELTIKEH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPR 360
Q+FINEQKSIMQSLSKDV+TVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDK+HLP+
Sbjct: 301 QKFINEQKSIMQSLSKDVNTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
M+AC RSI+KLL+FC+DKKNEMN+FVHNYMQKITYVSY+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MEACGRSITKLLEFCKDKKNEMNIFVHNYMQKITYVSYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480
F DLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKA+
Sbjct: 421 FTDLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGL-RKGEKPVN 539
S YIPRD+L +MGLYDTP+QCDVNIAP DTNLLDID+SDL+ YAPE+LAGL K EK +
Sbjct: 481 SSYIPRDVLAAMGLYDTPSQCDVNIAPFDTNLLDIDMSDLDRYAPEHLAGLPLKSEKLAS 540
Query: 540 VR-------DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELA 592
+R + SHS EAEEI+ D D++D EL EGCELVEIAGTSKMEVENAKLKAELA
Sbjct: 541 LRSSFSMSTESSHSAEAEEISADTHDKDD-HELLEGCELVEIAGTSKMEVENAKLKAELA 599
Query: 593 SAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCV 652
SA ALICSL E+EYESLDDSK+D +LKNAAE+TAEAL LKDEYGKH+Q+MLKAKQMQC+
Sbjct: 600 SAQALICSLGLELEYESLDDSKVDSLLKNAAERTAEALQLKDEYGKHLQSMLKAKQMQCL 659
Query: 653 SYEKRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTS 712
SYEKRIQELEQRLSDQYL QK S VSDF + KAD KPE +GGG TS
Sbjct: 660 SYEKRIQELEQRLSDQYLQGQKLSISNLVSDFDIPAAKADGSKPEVTGGG--------TS 711
Query: 713 EPMDEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
EPMDEVSC+SNS D+KL LL RQPSKGREGVDENM+DSSGMLN LDS M EP REEL +
Sbjct: 712 EPMDEVSCISNSLDSKLGLLTRQPSKGREGVDENMMDSSGMLNTQLDSLMTEPQREELQV 771
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
++KDGK K+ QLGMS+ NSSTAESMPE N+LP DAT ++ +S++VL+LQ AL
Sbjct: 772 SDKDGKDKLVAQLGMSLANSSTAESMPEAQNVLPSDATVEAK-----TSDVVLELQRALD 826
Query: 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLC 892
+KSDQL E + KLKA ME+V +L RELEM +KLLDESQMNCAHLENCLHEAREEAQTHLC
Sbjct: 827 EKSDQLGEIENKLKAAMEDVTVLTRELEMSRKLLDESQMNCAHLENCLHEAREEAQTHLC 886
Query: 893 AADRRASEYSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDD 952
AADRRASEY+ALRASAVK+R LFERL+SCV A G GFADSLR LAQSL NS +DNEDD
Sbjct: 887 AADRRASEYNALRASAVKMRSLFERLKSCVCAPVGVAGFADSLRALAQSLGNSNNDNEDD 946
Query: 953 GTAEFRKCIRVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKHQL 1012
TAEFRKCIR L+++V+FLSRHREELLDK K+E A+EQL+KELEEKKELV TLY KHQL
Sbjct: 947 STAEFRKCIRALSEKVSFLSRHREELLDKYPKLEAANEQLRKELEEKKELVTTLYKKHQL 1006
Query: 1013 EKQANKEKISFSRLEVHEIAAFVLNSAGHYEAINRNCSNYYLSAESVALFTDNLPRRPSY 1072
EKQANKE+ISF RLE+HEIAAFV+N+AGHYEAINR+ SNYYLSAESVALFTD+LP RP Y
Sbjct: 1007 EKQANKERISFGRLEIHEIAAFVINTAGHYEAINRSSSNYYLSAESVALFTDHLPSRPRY 1066
Query: 1073 IVGQIVHIERQTAKPLPPAATRPGQGKADQVDRLTFDTGTDRLALNSGSTTSNPFGLPIG 1132
IVGQIVHIERQTAKPLP RP G+ + VD LT DTGTD L L + ++SNP+ LPIG
Sbjct: 1067 IVGQIVHIERQTAKPLP---ARPEHGRGNPVDHLTSDTGTDLLTLKNLGSSSNPYNLPIG 1123
Query: 1133 CEYFIVTVAMLPDTSIHSPPPS 1154
CEYF+VTVAMLPDT+I S P S
Sbjct: 1124 CEYFVVTVAMLPDTTIRSSPAS 1145
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143908|ref|XP_002325118.1| predicted protein [Populus trichocarpa] gi|222866552|gb|EEF03683.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225445782|ref|XP_002273616.1| PREDICTED: uncharacterized protein LOC100267388 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356498781|ref|XP_003518227.1| PREDICTED: uncharacterized protein LOC100794018 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224088338|ref|XP_002308415.1| predicted protein [Populus trichocarpa] gi|222854391|gb|EEE91938.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449453950|ref|XP_004144719.1| PREDICTED: uncharacterized protein LOC101216810 [Cucumis sativus] gi|449518296|ref|XP_004166178.1| PREDICTED: uncharacterized LOC101216810 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357479969|ref|XP_003610270.1| hypothetical protein MTR_4g130370 [Medicago truncatula] gi|355511325|gb|AES92467.1| hypothetical protein MTR_4g130370 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|15234869|ref|NP_194808.1| uncharacterized protein [Arabidopsis thaliana] gi|5725443|emb|CAB52452.1| putative protein [Arabidopsis thaliana] gi|7269980|emb|CAB79797.1| putative protein [Arabidopsis thaliana] gi|332660409|gb|AEE85809.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|147866071|emb|CAN78826.1| hypothetical protein VITISV_042065 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|50252083|dbj|BAD28013.1| unknown protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | ||||||
| TAIR|locus:2131944 | 1148 | AT4G30790 [Arabidopsis thalian | 0.981 | 0.986 | 0.625 | 0.0 | |
| TAIR|locus:2045412 | 1333 | AT2G32240 "AT2G32240" [Arabido | 0.273 | 0.237 | 0.252 | 1.7e-06 | |
| WB|WBGene00006754 | 882 | unc-15 [Caenorhabditis elegans | 0.195 | 0.256 | 0.161 | 7.7e-06 | |
| ZFIN|ZDB-GENE-020604-1 | 1935 | myhz2 "myosin, heavy polypepti | 0.232 | 0.138 | 0.224 | 9.2e-06 | |
| ZFIN|ZDB-GENE-000322-5 | 1938 | myhz1.1 "myosin, heavy polypep | 0.220 | 0.131 | 0.228 | 9.2e-06 | |
| ZFIN|ZDB-GENE-070705-73 | 1937 | myhz1.2 "myosin, heavy polypep | 0.220 | 0.131 | 0.228 | 1.2e-05 | |
| ZFIN|ZDB-GENE-070705-74 | 1937 | myhz1.3 "myosin, heavy polypep | 0.220 | 0.131 | 0.228 | 1.2e-05 | |
| MGI|MGI:2445022 | 917 | A630007B06Rik "RIKEN cDNA A630 | 0.259 | 0.326 | 0.250 | 1.3e-05 | |
| ZFIN|ZDB-GENE-081124-1 | 1939 | myhb "myosin, heavy chain b" [ | 0.224 | 0.133 | 0.202 | 2.6e-05 | |
| ZFIN|ZDB-GENE-030131-5336 | 1936 | wu:fd14a01 "wu:fd14a01" [Danio | 0.221 | 0.132 | 0.215 | 2.9e-05 |
| TAIR|locus:2131944 AT4G30790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3592 (1269.5 bits), Expect = 0., P = 0.
Identities = 726/1160 (62%), Positives = 872/1160 (75%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
MS S TE +GKLL+ ++ENGHSFE C+E + VE+VMRF+ES +GI +DQL+L LD
Sbjct: 1 MSGSFTESFADDGKLLLCVAENGHSFEFQCSETTSVESVMRFVESVSGIALSDQLLLSLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQXXXX 120
MKLEPQKLLSA+ LP+ D+EVF+FNK LQSNS PPSPE VD+ +VAD PPA
Sbjct: 61 MKLEPQKLLSAFGLPASDREVFVFNKAMLQSNSHPPSPEDVDLQDVADALPPASLHEHHP 120
Query: 121 XXXXXXXXXXXXXSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
YERQFRYH+H+G IY T K E CERL REQKVQ+RAVEV N
Sbjct: 121 LDDASDPALKALPLYERQFRYHFHKGRTIYNCTVVKHENCERLTREQKVQQRAVEVATRN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
LEQYYRVI QN+ +FMKRY Q R+HSDLL NFGRDIEKLRS K+HP LQT + KCLLDF
Sbjct: 181 LEQYYRVIYQNFLEFMKRYKHQHRLHSDLLMNFGRDIEKLRSAKIHPYLQTESRKCLLDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKE++L+K+ E C+SSHRQFENK++QF+Q+F +VKR+VEEL RASL +KNLE+ +K+H
Sbjct: 241 VKEDNLKKAVENCASSHRQFENKIAQFQQMFVEVKRKVEELFACRASLSMKNLEVTVKDH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKXXXXXXXXXXXXXXRPHDAVSALGPMYDVHDKSHLPR 360
+RFI+E+KSIMQSLSKDV+TVKK RPHDAVSALGPMY+VHDK+HLP+
Sbjct: 301 ERFIDEEKSIMQSLSKDVNTVKKLVDDCMSSQVSSSLRPHDAVSALGPMYEVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
MQAC SIS+LLDFC++KKNEMN FVH YMQKITYV+Y+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MQACYNSISELLDFCKNKKNEMNNFVHGYMQKITYVTYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKXXXXXXXXXXFLKAN 480
FADLKLVRG+GPAYRACLAEVVRRKASMKLYMGMAGQLAE+LA K FLK +
Sbjct: 421 FADLKLVRGVGPAYRACLAEVVRRKASMKLYMGMAGQLAEKLAMKRETEVRKREEFLKTH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGLRKG----EK 536
++PRD+L SMGLYDTP QCDVN+AP DT+LL+I+ISD++ YAPE+L GL +
Sbjct: 481 GPFVPRDVLASMGLYDTPTQCDVNVAPYDTSLLNIEISDVDRYAPEFLVGLHSKIASLKS 540
Query: 537 PVNVR-DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELASAI 595
+ + D S S E EEI +D D+++ +++ EL+EIAGTSKMEVENAKLKA+LASAI
Sbjct: 541 SLTMSGDSSLSAEPEEIGIDTFDKDNFDDILAASELIEIAGTSKMEVENAKLKADLASAI 600
Query: 596 ALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYE 655
+ ICSL P+ EYE LD+S+++ VLKNAA+KTAEAL KDEY KH+ MLK KQM C SYE
Sbjct: 601 SRICSLGPQFEYEVLDESEVENVLKNAADKTAEALQAKDEYEKHLLLMLKEKQMHCDSYE 660
Query: 656 KRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTSEPM 715
KRI+ELEQRLSD+YL Q+H+N KDVS L+ EK + K E+S E + +S SEPM
Sbjct: 661 KRIRELEQRLSDEYLQGQRHNN-KDVSGLNLMHEKVSEYKAEASSDVEGNKTHVSGSEPM 719
Query: 716 DEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPINEK 775
DEVSCVSN L ++QP K REG+DENM+DSS +L+ PLDSSM+E + NEK
Sbjct: 720 DEVSCVSN-------LTSKQPCKAREGMDENMVDSSQVLSQPLDSSMLESQQN----NEK 768
Query: 776 DGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALADKS 835
GK G++G+ ++NSSTAES P L + GLD K S +++L+L++ L +KS
Sbjct: 769 GGKDSEAGEMGVFLSNSSTAES---PQKSLDDNVATGRGLDAKDSGDIILELRNELMEKS 825
Query: 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAAD 895
++LSE ++KL MEEV L RELE QKLL+ESQMNCAHLENCLHEAREEAQTHLCAAD
Sbjct: 826 NKLSEMESKLNGAMEEVSNLSRELETNQKLLEESQMNCAHLENCLHEAREEAQTHLCAAD 885
Query: 896 RRASEYSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDDGTA 955
RRAS+Y+ALRASAVK+RGLFER RS V A G FADSLRTLAQ+LANS+++NEDDGT
Sbjct: 886 RRASQYTALRASAVKMRGLFERFRSSVCAGSGIADFADSLRTLAQALANSVNENEDDGTT 945
Query: 956 EFRKCIRVLADRVAFLSRHREELLDKNRKVXXXXXXXXXXXXXXXXXXXXXYTKHQLEKQ 1015
EFRKCIRVLAD+V+FLS+HREELL+K + + YTKHQL KQ
Sbjct: 946 EFRKCIRVLADKVSFLSKHREELLEKCQNLEATSEQTRKDLEEKKELVKTLYTKHQLGKQ 1005
Query: 1016 ANKEKISFSRLEVHEIAAFVLNSAGHYEAINRNCSNYYLSAESVALFTDNLPRRPSYIVG 1075
ANKEKISF RLEVHEIAAFVLN AGHYEAINRNC NYYLS+ES ALFTD+LP RP+YIVG
Sbjct: 1006 ANKEKISFGRLEVHEIAAFVLNQAGHYEAINRNCPNYYLSSESEALFTDHLPSRPTYIVG 1065
Query: 1076 QIVHIERQTAKPLPPAATRPGQGKADQVDRLTFDTGTDRLALNS------GSTTSNPFGL 1129
QIVHIERQ K LP + +A + L D G+ LA +S +TTSNP+GL
Sbjct: 1066 QIVHIERQIVK-LPSQLSASASPEAGKTHHLCSDQGSRTLASSSISTSTSATTTSNPYGL 1124
Query: 1130 PIGCEYFIVTVAMLPDTSIH 1149
GCEYFIVT+AMLPDT+IH
Sbjct: 1125 SSGCEYFIVTIAMLPDTAIH 1144
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| TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00006754 unc-15 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-020604-1 myhz2 "myosin, heavy polypeptide 2, fast muscle specific" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-000322-5 myhz1.1 "myosin, heavy polypeptide 1.1, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-73 myhz1.2 "myosin, heavy polypeptide 1.2, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-74 myhz1.3 "myosin, heavy polypeptide 1.3, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2445022 A630007B06Rik "RIKEN cDNA A630007B06 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-081124-1 myhb "myosin, heavy chain b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1154 | |||
| pfam10377 | 128 | pfam10377, ATG11, Autophagy-related protein 11 | 3e-21 | |
| pfam04108 | 408 | pfam04108, APG17, Autophagy protein Apg17 | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.001 |
| >gnl|CDD|220723 pfam10377, ATG11, Autophagy-related protein 11 | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-21
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 46/164 (28%)
Query: 989 HEQLKKELEEKKELVKTLYTKHQLEKQ----ANKEKISFSRLEVHEIAAFVLNSAGH--- 1041
E + K ++ ++L K L +++ ++Q KEKI+F +V ++ F+
Sbjct: 2 EEAVIKRFKDVEQLAKKLQKENKSKRQKLHKLQKEKIAFRNFKVGDLVLFLPTRRHAQNK 61
Query: 1042 --YEAINRNCSNYYLSAESVALFTDNLPRRPSYIVGQIVHIERQTAKPLPPAATRPGQGK 1099
+ A N +Y+L ES A + +IVG++V IE +
Sbjct: 62 QPWAAFNVGAPHYFLKEESSA---AEALKTREWIVGRVVSIEECVVR------------- 105
Query: 1100 ADQVDRLTFDTGTDRLALNSGSTTSNPFGLPIGCEYFIVTVAML 1143
NPF L G ++ V +
Sbjct: 106 ---------------------DKDDNPFRLSRGTVWYRVEAKEV 128
|
The function of this family is conflicting. In the fission yeast, Schizosaccharomyces pombe, this protein has been shown to interact with the telomere cap complex. However, in budding yeast, Saccharomyces cerevisiae, this protein is called ATG11 and is shown to be involved in autophagy. Length = 128 |
| >gnl|CDD|217899 pfam04108, APG17, Autophagy protein Apg17 | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| KOG4572 | 1424 | consensus Predicted DNA-binding transcription fact | 100.0 | |
| PF10377 | 129 | ATG11: Autophagy-related protein 11; InterPro: IPR | 99.97 | |
| PF04108 | 412 | APG17: Autophagy protein Apg17 ; InterPro: IPR0072 | 99.94 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 97.53 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 97.02 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 97.01 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 96.98 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 96.89 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 96.87 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 96.75 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 96.72 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 96.72 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 96.71 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 96.66 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 96.64 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.58 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 96.56 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 96.52 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 96.51 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 96.5 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 96.45 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 96.31 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 96.25 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 96.05 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.02 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 95.91 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 95.9 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 95.88 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 95.46 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 94.72 | |
| PRK11637 | 428 | AmiB activator; Provisional | 93.63 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 93.48 | |
| KOG0004 | 156 | consensus Ubiquitin/40S ribosomal protein S27a fus | 92.81 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 92.72 | |
| KOG0003 | 128 | consensus Ubiquitin/60s ribosomal protein L40 fusi | 92.56 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 91.16 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 90.59 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 90.5 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 90.35 | |
| PF04108 | 412 | APG17: Autophagy protein Apg17 ; InterPro: IPR0072 | 90.19 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 88.58 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 87.99 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 87.83 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 86.47 | |
| KOG0005 | 70 | consensus Ubiquitin-like protein [Cell cycle contr | 86.26 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 84.68 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 84.37 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 84.31 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 82.88 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 82.36 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 80.65 | |
| KOG0001 | 75 | consensus Ubiquitin and ubiquitin-like proteins [P | 80.52 |
| >KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=357.84 Aligned_cols=463 Identities=18% Similarity=0.236 Sum_probs=369.1
Q ss_pred cCCceeEecCC-CCCCHHHHHHHHHHHhCCCCCCEEEEecC-Ccccccccccccc-CCCCCceEEEEeccccCCCCCCCC
Q 001114 21 ENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCLD-MKLEPQKLLSAYR-LPSDDKEVFIFNKLRLQSNSPPPS 97 (1154)
Q Consensus 21 htG~~l~~d~~-~f~SVe~LK~~Ia~~t~IP~~~QILLtsg-Gkl~k~~~L~~Y~-l~~denEIFVFDRrll~~~~~~p~ 97 (1154)
++|+.++||+. ..+++.+||..|+...|+...++.+|..| .....++.|+.|+ +|++++|||+||+...-.+.++..
T Consensus 2 drGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a~ 81 (1424)
T KOG4572|consen 2 DRGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHAG 81 (1424)
T ss_pred CCCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCCC
Confidence 68999999998 58899999999999999999999999865 5788999999998 778889999999988766655444
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCChhh--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 98 PEQVDVLEVADPPPPALSQDPHPLDDAPDPAL--KALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVE 175 (1154)
Q Consensus 98 ~e~l~ipe~~~pP~p~~s~~pspL~ds~dp~l--raL~sye~lfr~~l~~A~AL~~~a~~~~e~ce~Lv~Ei~vq~raL~ 175 (1154)
|.. ... -...+|+.+... -.+|+-...+.....+|..++..|......|.+|+++-+++++||.
T Consensus 82 pdt-Tyi-------------FqmedDae~kaeesL~mpa~fhivae~~elA~e~~eVaaelcqfCagLVhdehf~HkGWa 147 (1424)
T KOG4572|consen 82 PDT-TYI-------------FQMEDDAEDKAEESLKMPAPFHIVAELPELAKECREVAAELCQFCAGLVHDEHFLHKGWA 147 (1424)
T ss_pred CCc-eee-------------eecccHHHHHHHHHHcCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 431 100 012233322111 1244444456777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCccccc---------------------
Q 001114 176 VGRGNLEQYYRVINQNYND---FMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQT--------------------- 231 (1154)
Q Consensus 176 aAvaNLe~~~~~lek~f~e---f~~~~~qll~~~~~LL~~we~dLe~Lr~IpIhpaL~~--------------------- 231 (1154)
|.++||++.+....+..-. ....+.++.++...+|-+|...++.|++||+..+|.+
T Consensus 148 AiiaNLddcsnk~dKl~fKFe~i~Sk~~e~IEdidlkLlhlgdaVeqlakIpllecltrhsyreclgrldelPeeedsek 227 (1424)
T KOG4572|consen 148 AIIANLDDCSNKMDKLGFKFELIHSKSEELIEDIDLKLLHLGDAVEQLAKIPLLECLTRHSYRECLGRLDELPEEEDSEK 227 (1424)
T ss_pred HHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHhcchHhhhhhhhHHHhhcccccCchhhhcch
Confidence 9999999999887765544 4456677888889999999999999999998887754
Q ss_pred -------------cc----------------------------------------------------------ccccccc
Q 001114 232 -------------AT----------------------------------------------------------CKCLLDF 240 (1154)
Q Consensus 232 -------------e~----------------------------------------------------------~~TL~Df 240 (1154)
.. ..+|.||
T Consensus 228 AelkrSTel~inPD~~rttneslltsfpksvehvspdtadaesgkeirescqstvhqqdettidtkdgdlpffn~sLfD~ 307 (1424)
T KOG4572|consen 228 AELKRSTELPINPDEKRTTNESLLTSFPKSVEHVSPDTADAESGKEIRESCQSTVHQQDETTIDTKDGDLPFFNCSLFDF 307 (1424)
T ss_pred HhhccccccCCCCCCccccchhhhhcCcccccccCCccccchhhhHHHHHhhhhhhhcccccccccCCCcccccchHHHH
Confidence 00 2789999
Q ss_pred cCh----hHHHHHHHHHHHHHHHHHHHHHH-----HHH--------HHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 001114 241 VKE----EHLRKSAETCSSSHRQFENKVSQ-----FKQ--------IFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRF 303 (1154)
Q Consensus 241 Vd~----e~Lrk~ae~C~~s~~~f~~Kv~~-----L~~--------~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~l 303 (1154)
|.. .++....+.|-...++++.++.. +.+ .+..+++.-+. .+.|+.++..+.++
T Consensus 308 IamaD~~adldgL~~kcfdkirqLd~qia~pfiaecqqt~akldNQemkafKGiedR---------f~aLd~miaSC~rl 378 (1424)
T KOG4572|consen 308 IAMADPEADLDGLPDKCFDKIRQLDEQIAIPFIAECQQTHAKLDNQEMKAFKGIEDR---------FSALDFMIASCERL 378 (1424)
T ss_pred HHhcCCccchhhhhHHHHHHHHhhchhhhhHHHHHHHHHHHhhcchhhHhhhcHHHH---------HHHHHHHHHHHHHH
Confidence 974 45666666666655555544322 111 22233333333 34788999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 304 INEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMN 383 (1154)
Q Consensus 304 i~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~ 383 (1154)
+++++.+++.+..++-..-++.| .+.|++++.+|.+.++ .|+++..++.++.+.|.++|.++.
T Consensus 379 vnEqKeLahgflAn~keaekikD----------------an~LPdic~eHan~ll-iifeN~refldikqkcdqaKQEia 441 (1424)
T KOG4572|consen 379 VNEQKELAHGFLANIKEAEKIKD----------------ANKLPDICEEHANCLL-IIFENFREFLDIKQKCDQAKQEIA 441 (1424)
T ss_pred HHHHHHHHHHHHHhhhhcccccc----------------cccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999988877766654 4689999999998776 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHhhhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 384 VFVHNYMQKITYVSYV-IKDAKLQFPVFREAMVRQDDIFADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERL 462 (1154)
Q Consensus 384 ~~~~~~Lr~IS~IQs~-I~evk~~L~~L~e~L~rq~d~F~~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeL 462 (1154)
++++.+|.|..++... ..+..+.++.|.-.+.....+++.+.++.+.|.+|...|+|+||||-|...|..|++.+...-
T Consensus 442 kNLhtRlk~ccfqml~adqdgek~~allel~ieale~hmdiieairdaP~lYclaVsEiVRRklfike~eEWaga~skd~ 521 (1424)
T KOG4572|consen 442 KNLHTRLKGCCFQMLDADQDGEKDIALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRRKLFIKELEEWAGAHSKDC 521 (1424)
T ss_pred HHHHhhhhhhheeehhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999998886664 444445556666555556678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhccCCCCCCCCccccccC--CCCCCCccCCHHHHH---hhhh
Q 001114 463 ATKREVEVRRREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIA--PSDTNLLDIDISDLE---VYAP 525 (1154)
Q Consensus 463 a~lreeE~kRRekf~K~~G~~LP~dL~~~~GL~d~PP~~evnl~--~~D~~LP~I~r~Dle---~yi~ 525 (1154)
+.|.+.|.+.|+.|-+.|..+|++.+| +|++|+.|.+-++.+ .||+.||+|..+||. .++|
T Consensus 522 aqf~eaEekkREqfGk~fkKhFLha~f--f~gfDn~P~~fckak~eKfDcdLPdIa~edik~Lqd~cP 587 (1424)
T KOG4572|consen 522 AQFSEAEEKKREQFGKKFKKHFLHALF--FGGFDNLPEFFCKAKLEKFDCDLPDIAKEDIKDLQDACP 587 (1424)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhh--hcccccCCHHHhcCChhhcCCCCchhhHHHHHHHHHhCh
Confidence 999999999999999999999999998 477776556666665 499999999999875 4455
|
|
| >PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance | Back alignment and domain information |
|---|
| >PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 2e-17
Identities = 110/732 (15%), Positives = 213/732 (29%), Gaps = 225/732 (30%)
Query: 189 NQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKE----- 243
+ ++ DF + Q + D+L+ F CK + D K
Sbjct: 3 HHHHMDF--ETGEHQYQYKDILSVFEDAFVD-----------NFDCKDVQDMPKSILSKE 49
Query: 244 --EHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQ 301
+H+ S + S + R F +S+ +++ V++ VEE+L N +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLR-------INYK------- 92
Query: 302 RFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRM 361
F+ +++ + S + ++ + R ++ V K ++ R+
Sbjct: 93 -FLMSP---IKTEQRQPSMMTRMYIEQRD-------RLYNDN-------QVFAKYNVSRL 134
Query: 362 QACDRSISKLLDFCQDKKNEMNVFVHNYMQ---KITYVSYVIKDAKLQ----FPVF---- 410
Q + LL + + + NV + + K V K+Q F +F
Sbjct: 135 QPYLKLRQALL---ELRPAK-NVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 411 -REAMVRQDDIFADL-KLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREV 468
+ + L KL+ I P + + R + L +R +
Sbjct: 190 KNCN--SPETVLEMLQKLLYQIDPNWTS-------RSDHSSNIKLRIHSIQAEL--RRLL 238
Query: 469 EVRRREEFLKANSVYIPRD-----ILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVY 523
+ + E N + + + + L C + + + D
Sbjct: 239 KSKPYE-----NCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF-------- 280
Query: 524 APEYLAGLRKGEKPVN-VRDGSHSVEAEEIALDALDREDPEEL-HEGCE----LVEIAGT 577
L+ ++ E + + L LD P++L E + I
Sbjct: 281 ----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAE 335
Query: 578 SKME----------VENAKLKAELASAIALICSLCP-EME--YESL----DDSKL-DGVL 619
S + V KL + S++ L P E ++ L + + +L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 620 --------KNAAEKTAEALH---LKDEYGK-------HIQAMLKAKQMQCVSYEKRIQEL 661
K+ LH L ++ K I LK K L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYAL 445
Query: 662 EQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGG------GETHMPCISTSEPM 715
+ + D Y + + + DD P G H+ I E M
Sbjct: 446 HRSIVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHIGH-HLKNIEHPERM 490
Query: 716 DEVSCVSNSF---DAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
V F + K+ S +LN +P+ I
Sbjct: 491 TLFRMVFLDFRFLEQKI-----------RHDSTAWNASGSILNTLQQLKFYKPY-----I 534
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
+ D KY+ + + E N++ T +L+ + AL
Sbjct: 535 CDNDPKYER--LVNAILDFLPKIE-----ENLICSKYT-----------DLL---RIALM 573
Query: 833 DKSDQLSETQTK 844
+ + + E K
Sbjct: 574 AEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| 4hpq_C | 413 | ATG17, KLTH0D15642P; autophagy, protein transport; | 99.87 | |
| 4efo_A | 94 | Serine/threonine-protein kinase TBK1; ubiquitin li | 98.0 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 97.64 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 97.57 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 97.56 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 97.53 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 97.5 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 97.49 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 97.47 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 97.47 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 97.45 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 97.45 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 97.42 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 97.4 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 97.38 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 97.38 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 97.36 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 97.35 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 97.35 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 97.29 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 97.28 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 97.27 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 97.27 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 97.27 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 97.24 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 97.24 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 97.23 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 97.2 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 97.2 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 97.19 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 97.18 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 97.17 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 97.15 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 97.15 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 97.11 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 97.09 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 97.08 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 97.08 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 97.06 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 97.04 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 97.02 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 96.98 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 96.97 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 96.92 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 96.9 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 96.89 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 96.86 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 96.85 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 96.8 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 96.74 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 96.71 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 96.66 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 96.64 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 96.58 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 96.58 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 95.58 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 96.55 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 96.51 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 96.49 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 96.43 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 96.41 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 96.39 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 96.35 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 96.35 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 96.1 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 96.09 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 96.06 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 96.05 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 95.98 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 95.94 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 95.91 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 95.63 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 95.61 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 95.59 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 95.59 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 95.57 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 95.48 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 95.24 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 95.2 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 95.05 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 94.62 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 94.58 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 94.54 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 94.02 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 93.96 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 93.91 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 93.57 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 92.16 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 92.12 | |
| 1se9_A | 126 | Ubiquitin family; ubiquitin-like, cell-free, wheat | 92.03 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 91.93 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 91.8 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 91.75 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 91.64 | |
| 2xzm_9 | 189 | RPS31E; ribosome, translation; 3.93A {Tetrahymena | 91.44 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 90.74 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 90.0 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 88.61 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 87.97 | |
| 3nmd_A | 72 | CGMP dependent protein kinase; leucine zipper, coi | 83.99 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 83.92 |
| >4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-20 Score=212.12 Aligned_cols=340 Identities=12% Similarity=0.143 Sum_probs=216.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHH
Q 001114 133 PSYERQFRYHYHRGHAIYIRTQAKIEM-------CERLLREQKVQERAVEVGRGNLEQYY--RVINQ---NYNDFMKRYS 200 (1154)
Q Consensus 133 ~sye~lfr~~l~~A~AL~~~a~~~~e~-------ce~Lv~Ei~vq~raL~aAvaNLe~~~--~~lek---~f~ef~~~~~ 200 (1154)
..|-..-+..+.+|+.++..|+..... +...++...++..|+.-....|..++ ..|.. .++....-|.
T Consensus 7 ~~~~~~A~~tL~~AQ~lC~~A~~~l~~t~~~L~~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~ 86 (413)
T 4hpq_C 7 EKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLV 86 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 346555666778888888777664433 44455566666666666666665322 12222 1222222344
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCCCCcccccccccccccccChh-------HHHHH--HHH-HHHHHHHHHHHHHHH---
Q 001114 201 QQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKEE-------HLRKS--AET-CSSSHRQFENKVSQF--- 267 (1154)
Q Consensus 201 qll~~~~~LL~~we~dLe~Lr~IpIhpaL~~e~~~TL~DfVd~e-------~Lrk~--ae~-C~~s~~~f~~Kv~~L--- 267 (1154)
++...........+..|+.|+.+++.+.+ ++.++|+||||.+ +|+++ .+. .......|..-+..+
T Consensus 87 ~lv~~l~~~~~~L~~~~~~Lr~T~v~~~~--~~~k~L~DFIs~~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~~ 164 (413)
T 4hpq_C 87 RLVNDMKFWQNEITKMMNKLDNITNEIDQ--QHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQ 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCSS--SCCCTTTTSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCcHHHHcCHhhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777888899999999999999998 3338999999975 44444 332 344445555444444
Q ss_pred --HHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccc
Q 001114 268 --KQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSA 345 (1154)
Q Consensus 268 --~~~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~ 345 (1154)
+..+..++..+...+...+..+..-....+.+...+-.++.++..+|.++|+-...+.+.
T Consensus 165 l~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ll~el~~le~elA~~L~SLT~HyDqC~~l~~~------------------ 226 (413)
T 4hpq_C 165 LVESRMKGLRDEFSSKFGDQCRENLKLNEEFTNEADQLEQELADFLKSFTDHFDKCSALSSR------------------ 226 (413)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------------------
T ss_pred HHHhhHHHHHHHHHhccCCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 334444544444433333222222122345556666788999999999999877666532
Q ss_pred cCchhhhhhccchHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH---HHHHHHHHHHHHHHHH
Q 001114 346 LGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKK---------------------NEMNVF---VHNYMQKITYVSYVIK 401 (1154)
Q Consensus 346 Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~K---------------------NeL~~~---~~~~Lr~IS~IQs~I~ 401 (1154)
++...++.+++..|...+.++.+++..+...- ..+... ....++.....-..+.
T Consensus 227 --~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~ 304 (413)
T 4hpq_C 227 --SVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFE 304 (413)
T ss_dssp --SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22233345566666666666655555544321 111111 1111111111222334
Q ss_pred HHhhhhhHHHHHHHhhhhHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 402 DAKLQFPVFREAMVRQDDIFADLKL-VRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480 (1154)
Q Consensus 402 evk~~L~~L~e~L~rq~d~F~~L~~-V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~ 480 (1154)
++...|..|++.+..+.+.|..|.. ..++..+|.++|+|+.|||.+.+++.+.+++++++|++++++|.++|+.|+..+
T Consensus 305 ~i~e~l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~ 384 (413)
T 4hpq_C 305 GISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLEN 384 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677777777778888884 478999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhhhccCCCCC
Q 001114 481 SVYIPRDILGSMGLYD 496 (1154)
Q Consensus 481 G~~LP~dL~~~~GL~d 496 (1154)
|+|||.++| ||+-|
T Consensus 385 G~yLP~diw--pg~id 398 (413)
T 4hpq_C 385 GNYLPETIW--PDEIG 398 (413)
T ss_dssp SSSSCGGGS--TTTSS
T ss_pred cccCChhhC--CCccc
Confidence 999999999 57644
|
| >4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 97.7 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 97.7 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.67 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 97.63 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 97.52 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 97.45 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 97.43 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 97.42 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.36 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 97.31 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 97.29 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 97.29 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 97.21 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 97.18 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 97.15 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 97.12 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 97.03 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.01 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 96.9 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 96.89 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 96.87 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 96.75 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 96.63 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 96.43 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 96.39 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 95.82 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 95.77 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 95.59 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 95.54 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 95.35 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 94.46 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 94.08 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 93.03 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 88.09 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 87.07 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 85.14 |
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=4.2e-05 Score=66.33 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=63.5
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++- .+|+++.+++.+..+|.+||.-|+..+|||+++|.|+..|..+....+|++|++. +...|+|.-|
T Consensus 1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~-~~s~I~L~~r 72 (76)
T d1ogwa_ 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCC-CCCEEEEEEe
Confidence 567775 6899999999999999999999999999999999999988788888999999976 6678888766
|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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