Citrus Sinensis ID: 001118
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1150 | 2.2.26 [Sep-21-2011] | |||||||
| Q6S001 | 685 | Kinesin-related protein 1 | yes | no | 0.312 | 0.524 | 0.506 | 9e-99 | |
| Q54NP8 | 1922 | Kinesin-related protein 4 | no | no | 0.299 | 0.178 | 0.474 | 2e-88 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.301 | 0.140 | 0.454 | 2e-81 | |
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.304 | 0.129 | 0.460 | 6e-81 | |
| Q4R628 | 702 | Kinesin-like protein KIF3 | N/A | no | 0.312 | 0.511 | 0.434 | 3e-71 | |
| Q5R4H3 | 702 | Kinesin-like protein KIF3 | no | no | 0.312 | 0.511 | 0.434 | 4e-71 | |
| P28741 | 701 | Kinesin-like protein KIF3 | no | no | 0.363 | 0.596 | 0.381 | 5e-71 | |
| Q9Y496 | 699 | Kinesin-like protein KIF3 | no | no | 0.312 | 0.513 | 0.434 | 6e-71 | |
| P46872 | 699 | Kinesin-II 85 kDa subunit | no | no | 0.317 | 0.522 | 0.422 | 7e-70 | |
| Q2PQA9 | 963 | Kinesin-1 heavy chain OS= | no | no | 0.271 | 0.323 | 0.441 | 4e-67 |
| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function desciption |
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Score = 362 bits (929), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 198/391 (50%), Positives = 264/391 (67%), Gaps = 32/391 (8%)
Query: 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGE-QKSPG 177
+Y +D +F P VYD A+ +V AM+G N ++ AYG+TSSGKT TM G +K+PG
Sbjct: 116 SYTYDHLFPPTCDNYEVYDTVARELVKSAMEGYNASIMAYGITSSGKTFTMTGSGKKNPG 175
Query: 178 IIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQN--LRIRED-AQGTYV 234
IIPL+++D+F IQE REFLLRVSYLEIYNE +NDLL +N L+I E G YV
Sbjct: 176 IIPLSIQDIFTYIQECKEREFLLRVSYLEIYNETVNDLLGVNQENFNLKIHEHPVTGVYV 235
Query: 235 EGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESS---PTGENQG 291
G+KEE+VLS H LSLI+ GE HRHVGS ++NL SSRSHTIF + IES P G G
Sbjct: 236 AGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMIIESKEVLPEGSGSG 295
Query: 292 --EEDVTLSQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHI 348
E V S LNLIDLAGSE +S++ + +R KEGSYINKSLLTLGTVISKL+++ +I
Sbjct: 296 GLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLGTVISKLSEKDTGYI 355
Query: 349 PYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIM 408
PYRDSKLTR+LQ+SLSG+ R+++ICT+T AS+N EE+HNTLKFA R+K + A N+I+
Sbjct: 356 PYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASRAKKISNNAKVNEIL 415
Query: 409 DEKSLIKKYQKEITFLKQEL-------QQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQV 461
D+K+L+K+Y+ EI LK +L ++L+ + + M ++Q+
Sbjct: 416 DDKALLKQYRNEIAELKSKLSDALSTEKELQETLTEKEKMKITNQE-------------- 461
Query: 462 KLQSRLEEEEQEKAALLGRIQRLTKLILVST 492
L +L + E+ ++ L +I L KLILVST
Sbjct: 462 -LLHKLVDAEKHRSLLESKINNLNKLILVST 491
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
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| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1 | Back alignment and function description |
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| >sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4 | Back alignment and function description |
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| >sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2PQA9|KINH_RAT Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5b PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1150 | ||||||
| 302141795 | 1144 | unnamed protein product [Vitis vinifera] | 0.978 | 0.983 | 0.780 | 0.0 | |
| 359492383 | 1119 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.977 | 0.783 | 0.0 | |
| 449522073 | 1090 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.987 | 0.694 | 0.0 | |
| 449464180 | 1098 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.979 | 0.694 | 0.0 | |
| 255558638 | 1071 | kinesin heavy chain, putative [Ricinus c | 0.873 | 0.938 | 0.742 | 0.0 | |
| 356503030 | 1089 | PREDICTED: uncharacterized protein LOC10 | 0.927 | 0.979 | 0.646 | 0.0 | |
| 116310281 | 1154 | OSIGBa0102D10.3 [Oryza sativa Indica Gro | 0.961 | 0.958 | 0.632 | 0.0 | |
| 326515378 | 1151 | predicted protein [Hordeum vulgare subsp | 0.946 | 0.945 | 0.648 | 0.0 | |
| 357163589 | 1156 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.944 | 0.622 | 0.0 | |
| 242075850 | 1030 | hypothetical protein SORBIDRAFT_06g01707 | 0.881 | 0.984 | 0.651 | 0.0 |
| >gi|302141795|emb|CBI18998.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1763 bits (4565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 909/1164 (78%), Positives = 1009/1164 (86%), Gaps = 39/1164 (3%)
Query: 3 ASSGPRRSS--ISPFRSRKSPAQPPPPAKPTGRPATPSSTTSSRPPSRLSASPATSVSHS 60
ASS +RSS ISPFRSRKSPA P P K GRP TPS T SSRPPSRLS SP
Sbjct: 4 ASSRSQRSSTNISPFRSRKSPAPPSAPPKSNGRPTTPS-TASSRPPSRLSVSPV------ 56
Query: 61 PSPTTLPLDRPETSKSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAY 120
P+T LDRPE S++KENV VTVRFRPLSPRE+NKGDEIAWYADGDYTVRNEYN S AY
Sbjct: 57 -GPSTPSLDRPEVSRAKENVTVTVRFRPLSPREINKGDEIAWYADGDYTVRNEYNSSTAY 115
Query: 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIP 180
GFD+VFGPATTTRHVYDVAAQHVV GAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIP
Sbjct: 116 GFDRVFGPATTTRHVYDVAAQHVVGGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIP 175
Query: 181 LAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGTYVEGIKEE 240
LAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIRED+QGTYVEGIKEE
Sbjct: 176 LAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDSQGTYVEGIKEE 235
Query: 241 VVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300
VVLSPAHALSLIA GEEHRHVGSNNFNL SSRSHTIFTLTIESSP GE +GEEDVTLSQL
Sbjct: 236 VVLSPAHALSLIAAGEEHRHVGSNNFNLFSSRSHTIFTLTIESSPHGEIEGEEDVTLSQL 295
Query: 301 NLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQ 360
NLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTD+KATHIPYRDSKLTRLLQ
Sbjct: 296 NLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDDKATHIPYRDSKLTRLLQ 355
Query: 361 SSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKE 420
SSLSGHGR+SLICTVTPASSN+EETHNTLKFAHRSK VEIKASQNKIMDEKSLIKKYQKE
Sbjct: 356 SSLSGHGRVSLICTVTPASSNTEETHNTLKFAHRSKRVEIKASQNKIMDEKSLIKKYQKE 415
Query: 421 ITFLKQELQQLKRGMMDNPH-MAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLG 479
I+ LKQELQQLKRGMM+NP+ M S+Q+DLVNLKL QVKLQSRLEEEEQ KAAL+G
Sbjct: 416 ISSLKQELQQLKRGMMENPYMMTGSTQEDLVNLKL-----QVKLQSRLEEEEQAKAALMG 470
Query: 480 RIQRLTKLILVSTKNSMPSSIPERPGHRRRHSFGEDELAYLPDRKREYIIDDDAGSYVSE 539
RIQRLTKLILVSTKNSMPSS+P+ GHRRRHSFGEDELAYLP+RKREY+I DD GS+ SE
Sbjct: 471 RIQRLTKLILVSTKNSMPSSLPDTAGHRRRHSFGEDELAYLPNRKREYMIGDDTGSFDSE 530
Query: 540 LSAEARDDITNLDELVKDYKKSRRRGMLGWFKMRKPENLVGFSPSADSGSSSSVSPASSS 599
L E R DIT LD+LVKDYK++RRRGMLGWFK++KPENL GFSP+AD+ SS+S SP+SSS
Sbjct: 531 L-LEGRSDITYLDDLVKDYKRNRRRGMLGWFKLKKPENLGGFSPNADTESSTSASPSSSS 589
Query: 600 KSLHHRVTFNDIKDGRRKSISKRGDDSA-GGSFPERTKAGDLFSATVAGRRLPPSGTTIT 658
KSL +RV FND KD RRKS S+RGDDS+ SF ERT+AGDLF A V GRRLP +G+TIT
Sbjct: 590 KSLQNRVMFNDKKDARRKSTSRRGDDSSVVNSFSERTQAGDLFCAAVGGRRLPSTGSTIT 649
Query: 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRV 718
DQMDLL EQMKMLAGEVALCTSSLKRLSEQAASN EDSQL+EHMQKLKDEISEKKLQ+RV
Sbjct: 650 DQMDLLREQMKMLAGEVALCTSSLKRLSEQAASNPEDSQLKEHMQKLKDEISEKKLQMRV 709
Query: 719 LEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISEN 778
LEQRMIGSVE TPHT +T EMSQALSKLTTQLNEKTFELEI SADNRILQEQLQMK+SEN
Sbjct: 710 LEQRMIGSVEMTPHT-NTIEMSQALSKLTTQLNEKTFELEITSADNRILQEQLQMKMSEN 768
Query: 779 TEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEET 838
EMQETILLLRQQ++SL +K S SP+Q+ +N LK S+E+ ++KN + E+T
Sbjct: 769 AEMQETILLLRQQLNSLLDKSSSSPQQIPDNGASTLKKFSKELFEKKNEGK------EDT 822
Query: 839 FVDEHTPTSVMSLNRIFSHEESN-------LNSQVLMQAAEIENLKQERVKLVEERDGLE 891
++DE+TPTSVMSLNRIFS E+S L+SQVLMQA+EIENLKQE+V+L+EE+DGLE
Sbjct: 823 YIDENTPTSVMSLNRIFSQEDSKECNGDTFLSSQVLMQASEIENLKQEKVRLIEEKDGLE 882
Query: 892 IHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQR 951
IHS+KLAEEASYAKELA++AAVELRNLAEEVT+LSY+NAKL +LA+AKEA RSN CQR
Sbjct: 883 IHSRKLAEEASYAKELAAAAAVELRNLAEEVTKLSYQNAKLTGDLASAKEAPCRSNCCQR 942
Query: 952 SAPYEFKQSNSNGAR-----RKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGEL 1006
++ +QSNSNGAR RK DG+LVEELQKEL++RYQRE+ LE AL ER+Q+EGEL
Sbjct: 943 PGSFDVRQSNSNGARLDARLRKPGDGMLVEELQKELNARYQRESSLETALFERDQIEGEL 1002
Query: 1007 RKRIDEAKRHEEDLENELANMWVLIAKMRNSGINGEDMSSRGVHALKIPRTGIKNGFMPS 1066
R R+DEAK+ EEDLENELANMW+L+AKMR SG E+ SS GVH I ++ ++NGF P
Sbjct: 1003 RGRLDEAKQREEDLENELANMWMLVAKMRKSGTTSEETSSEGVHESNILQSRVRNGFPPI 1062
Query: 1067 NPRSLKLSEEDDVCENVDGVSSFEELSASYQTERRKCKELESLISRLKGEDISGLDVAAL 1126
N S K+ D++CEN+D +S+ EEL SY E+R+CKELESL+SRLKGEDI GLD+ AL
Sbjct: 1063 NGHSNKIF--DEICENMDEISTSEELRTSYLKEKRRCKELESLVSRLKGEDIIGLDMTAL 1120
Query: 1127 EELQNFHVEAITKICHAKCASHVL 1150
EELQN HV+AITKICHAKCA+HVL
Sbjct: 1121 EELQNLHVQAITKICHAKCANHVL 1144
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492383|ref|XP_002284508.2| PREDICTED: uncharacterized protein LOC100248995 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449522073|ref|XP_004168052.1| PREDICTED: uncharacterized protein LOC101229547, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449464180|ref|XP_004149807.1| PREDICTED: uncharacterized protein LOC101218642 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255558638|ref|XP_002520344.1| kinesin heavy chain, putative [Ricinus communis] gi|223540563|gb|EEF42130.1| kinesin heavy chain, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356503030|ref|XP_003520315.1| PREDICTED: uncharacterized protein LOC100817131 [Glycine max] | Back alignment and taxonomy information |
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| >gi|116310281|emb|CAH67300.1| OSIGBa0102D10.3 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|326515378|dbj|BAK03602.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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| >gi|357163589|ref|XP_003579782.1| PREDICTED: uncharacterized protein LOC100836602 [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|242075850|ref|XP_002447861.1| hypothetical protein SORBIDRAFT_06g017070 [Sorghum bicolor] gi|241939044|gb|EES12189.1| hypothetical protein SORBIDRAFT_06g017070 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1150 | ||||||
| TAIR|locus:2144103 | 986 | AT5G06670 [Arabidopsis thalian | 0.441 | 0.515 | 0.675 | 1.8e-216 | |
| TAIR|locus:2120187 | 1055 | AT4G39050 [Arabidopsis thalian | 0.389 | 0.424 | 0.731 | 6.3e-214 | |
| TAIR|locus:2050044 | 1058 | AT2G21380 [Arabidopsis thalian | 0.399 | 0.433 | 0.696 | 7.2e-213 | |
| TAIR|locus:2036987 | 890 | AT1G21730 [Arabidopsis thalian | 0.439 | 0.567 | 0.744 | 3.3e-207 | |
| DICTYBASE|DDB_G0291039 | 685 | kif11 "kinesin-7" [Dictyosteli | 0.32 | 0.537 | 0.515 | 4.9e-98 | |
| DICTYBASE|DDB_G0285101 | 1922 | kif4 "kinesin-7" [Dictyosteliu | 0.306 | 0.183 | 0.468 | 2.3e-91 | |
| UNIPROTKB|O42263 | 2954 | cenpe "Kinesin-related protein | 0.303 | 0.118 | 0.475 | 2.6e-87 | |
| UNIPROTKB|D6RBW0 | 1126 | CENPE "Centromere-associated p | 0.304 | 0.310 | 0.460 | 1.1e-85 | |
| UNIPROTKB|J9JHU7 | 2663 | CENPE "Uncharacterized protein | 0.326 | 0.140 | 0.449 | 2e-85 | |
| UNIPROTKB|E2R200 | 2684 | CENPE "Uncharacterized protein | 0.326 | 0.139 | 0.449 | 1.1e-84 |
| TAIR|locus:2144103 AT5G06670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1753 (622.1 bits), Expect = 1.8e-216, Sum P(2) = 1.8e-216
Identities = 363/537 (67%), Positives = 421/537 (78%)
Query: 58 SHSPSPTTL-----PLDRPETSKSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRN 112
SHS SPT+ P P+ +SKENV VTVRFRPLSPRE+ KG+EIAWYADG+ VRN
Sbjct: 41 SHS-SPTSSSVRSKPQLPPKPLQSKENVTVTVRFRPLSPREIRKGEEIAWYADGETIVRN 99
Query: 113 EYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN---------GTVFAYGVTSS 163
E N SIAY +D+VFGP TTTR+VYDVAAQHVVNGAM G+N GT+FAYGVTSS
Sbjct: 100 ENNQSIAYAYDRVFGPTTTTRNVYDVAAQHVVNGAMAGVNVTLSVNSTTGTIFAYGVTSS 159
Query: 164 GKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNL 223
GKTHTMHG Q+SPGIIPLAVKD F IIQETP REFLLRVSY EIYNEV+NDLL+P GQNL
Sbjct: 160 GKTHTMHGNQRSPGIIPLAVKDAFSIIQETPRREFLLRVSYFEIYNEVVNDLLNPAGQNL 219
Query: 224 RIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIES 283
RIRED QGTY+EGIKEEVVLSPAH LSLIA GEEHRH+GS +FNLLSSRSHT+FTLTIES
Sbjct: 220 RIREDEQGTYIEGIKEEVVLSPAHVLSLIAAGEEHRHIGSTSFNLLSSRSHTMFTLTIES 279
Query: 284 SPTGENQGEEDVTLSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDE 343
SP G+N V LSQLNLIDLAGSESSK ET+GLRRKEGSYINKSLLTLGTVISKLTD
Sbjct: 280 SPLGDNNEGGAVHLSQLNLIDLAGSESSKAETSGLRRKEGSYINKSLLTLGTVISKLTDR 339
Query: 344 KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKAS 403
+A+H+PYRDSKLTRLL+SSLSGHGR+SLICTVTPASSNSEETHNTLKFAHR+KH+EI+A+
Sbjct: 340 RASHVPYRDSKLTRLLESSLSGHGRVSLICTVTPASSNSEETHNTLKFAHRAKHIEIQAA 399
Query: 404 QNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKL 463
QNKI+DEKSLIKKYQ EI LK+EL+QLK+G+ + S DD +++ L L
Sbjct: 400 QNKIIDEKSLIKKYQYEIRQLKEELEQLKQGIKPVSQLKDISGDD-IDIVL--------L 450
Query: 464 QSRLXXXXXXKAALLGRIQRLTKLILVSTKNSMPSSIPERPGHRRRHSFGEDELAYLPDR 523
+ +L KAALL RIQRLTKLILVS K S R RRRHSFGE+ELAYLP +
Sbjct: 451 KQKLEEEEDAKAALLSRIQRLTKLILVSNKTPQTSRFSYRADPRRRHSFGEEELAYLPHK 510
Query: 524 KREYIIDDDAGSYVSELSAEARDDITNLDELVKDYKKSRRRGMLGWFKMRKPENLVG 580
+R+ D++ YVS E +I +D+ + KK+R+ G+L W K++K ++ +G
Sbjct: 511 RRDLTDDENLELYVSR---EGTPEI--IDDAFIEEKKTRKHGLLNWLKIKKKDSSLG 562
|
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| TAIR|locus:2120187 AT4G39050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2050044 AT2G21380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2036987 AT1G21730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0285101 kif4 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D6RBW0 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9JHU7 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R200 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1150 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-169 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-129 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-117 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-116 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-104 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 5e-96 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-94 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 4e-89 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 3e-87 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-84 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 5e-81 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 2e-75 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 2e-73 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 6e-72 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 5e-71 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 2e-68 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 6e-66 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-60 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 3e-25 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-09 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-04 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.001 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 502 bits (1294), Expect = e-169
Identities = 194/323 (60%), Positives = 240/323 (74%), Gaps = 5/323 (1%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTV-RNEYNPSIAYGFDKVFGPATTTRHVYD 137
+ V+VR RPL+PRE + +++AW D D T+ E P ++ FD+VFG +T R VY+
Sbjct: 1 KIKVSVRVRPLNPRESDN-EQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYE 59
Query: 138 VAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGRE 197
A+ VV A++G NGT+FAYG TSSGKT TM G+++ PGIIPLAV+D+F IQ+TP RE
Sbjct: 60 RIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDRE 119
Query: 198 FLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGE 256
FLLRVSYLEIYNE I DLL P+ Q LRIRED G V G+ EE+V SP H L LIA GE
Sbjct: 120 FLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGE 179
Query: 257 EHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETT 316
++RHVG +FN SSRSHTIF LTIES G+++ V +S LNLIDLAGSE +
Sbjct: 180 KNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGT-VRVSTLNLIDLAGSERASQTGA 238
Query: 317 GLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRISLICTV 375
G RRKEGS+INKSLLTLGTVISKL++ K + HIPYRDSKLTR+LQ SLSG+ R ++ICT+
Sbjct: 239 GERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTI 298
Query: 376 TPASSNSEETHNTLKFAHRSKHV 398
+PASS+ EET NTLKFA R+K V
Sbjct: 299 SPASSHVEETLNTLKFASRAKKV 321
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1150 | |||
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.63 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 96.91 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 96.32 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 96.11 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 96.09 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.95 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 95.7 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 95.68 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 95.67 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.65 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 95.58 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 95.46 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 95.1 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 94.52 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 94.44 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 93.99 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 93.77 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 93.68 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.12 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 93.02 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 92.88 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 92.57 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 92.45 | |
| PRK09039 | 343 | hypothetical protein; Validated | 92.4 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 91.8 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.33 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 91.3 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 91.17 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 91.12 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 90.98 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 90.5 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.45 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 90.31 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 90.26 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 90.25 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 90.07 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 89.94 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 89.92 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 89.88 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 89.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 88.99 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 88.74 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 88.16 | |
| PRK11637 | 428 | AmiB activator; Provisional | 88.15 | |
| PRK09039 | 343 | hypothetical protein; Validated | 88.05 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 87.68 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 87.44 | |
| PF15035 | 182 | Rootletin: Ciliary rootlet component, centrosome c | 87.43 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 87.24 | |
| PRK06620 | 214 | hypothetical protein; Validated | 86.69 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 85.62 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 85.59 | |
| PRK06526 | 254 | transposase; Provisional | 84.62 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 84.31 | |
| PRK12377 | 248 | putative replication protein; Provisional | 83.6 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 83.21 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 83.21 | |
| PRK09087 | 226 | hypothetical protein; Validated | 83.11 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 82.76 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 82.7 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 82.61 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 82.57 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 82.45 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 82.18 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 81.93 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 81.88 | |
| PRK08116 | 268 | hypothetical protein; Validated | 81.74 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 81.22 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 81.2 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 80.49 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 80.42 |
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-90 Score=837.40 Aligned_cols=356 Identities=40% Similarity=0.654 Sum_probs=322.6
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCC-Ce--EEecC---CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADG-DY--TVRNE---YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ 149 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~~--~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~ 149 (1150)
..-||+|+|||||++.+|......+++.+++ .. .++.. ..-.+.|+||+||||.+.|.+||+.++.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 3569999999999999998888877777776 33 22222 112467999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCceeecC--------CCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC-
Q 001118 150 GINGTVFAYGVTSSGKTHTMHG--------EQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG- 220 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~G--------~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~- 220 (1150)
|||||||||||||+||||||.| .+..+|||||++.+||+.+... +.+|.|+|||+|+|||.|+|||+|..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~-~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ-GAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc-CCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 9999999999999999999999 5678999999999999999754 48999999999999999999998764
Q ss_pred --CceEEEeCC------CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCC
Q 001118 221 --QNLRIREDA------QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGE 292 (1150)
Q Consensus 221 --~~L~IrEd~------~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~ 292 (1150)
..+.+.+++ +|++|.||.++.|.++.|++.+|.+|..+|++++|.||.+|||||+||+|+|....... .++
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~-~ge 284 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP-EGE 284 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC-cch
Confidence 345566655 47999999999999999999999999999999999999999999999999998664433 356
Q ss_pred cceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCcccee
Q 001118 293 EDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISL 371 (1150)
Q Consensus 293 ~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~m 371 (1150)
+.+..|||+||||||||. .++|+.+.|.+|++.||+||++||+||+||.++ +.|||||+|||||||||||||.++|+|
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 778999999999999998 789999999999999999999999999999985 589999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001118 372 ICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRG 434 (1150)
Q Consensus 372 IatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~ 434 (1150)
||||||+..+++||++||.||.|||+|+|+|.+|+.+..+.+++.|-.||++||.+|...+..
T Consensus 364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999999999999999999999988643
|
|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1150 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-73 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 5e-65 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 6e-65 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 1e-64 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 7e-62 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-60 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 1e-57 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 9e-57 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-55 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 8e-55 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 4e-54 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-52 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 4e-52 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-51 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 1e-51 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 1e-51 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 2e-51 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-51 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 2e-51 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 2e-51 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 4e-51 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 5e-51 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-46 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 2e-46 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-46 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 4e-46 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-45 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-45 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-45 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-45 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 7e-44 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 7e-44 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-43 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-43 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-43 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 1e-42 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-42 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 5e-42 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-39 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 9e-39 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 2e-37 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 4e-37 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 6e-37 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 3e-36 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 3e-36 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 5e-35 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-33 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 7e-33 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-32 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 1e-32 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-32 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 7e-32 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 7e-32 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 2e-26 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 2e-25 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 2e-25 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-14 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 7e-14 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 500 bits (1290), Expect = e-168
Identities = 154/349 (44%), Positives = 215/349 (61%), Gaps = 8/349 (2%)
Query: 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHV 135
+ V V VR RPL+ RE + G+ Y D V + + S ++ FD+VF TT++V
Sbjct: 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNV 61
Query: 136 YDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPG 195
Y+ A +++ A+QG NGT+FAYG T+SGKT+TM G + G+IP A+ D+F I++ P
Sbjct: 62 YEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD 121
Query: 196 REFLLRVSYLEIYNEVINDLLDPT--GQNLRIREDA-QGTYVEGIKEEVVLSPAHALSLI 252
REFLLRVSY+EIYNE I DLL T + L IRED + YV + EEVV + AL I
Sbjct: 122 REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWI 181
Query: 253 ATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTG-ENQGEEDVTLSQLNLIDLAGSE-S 310
GE+ RH G N SSRSHTIF + +ES G + E V +S LNL+DLAGSE +
Sbjct: 182 TKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERA 241
Query: 311 SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRI 369
++T G+R KEG IN+SL LG VI KL+D + I YRDSKLTR+LQ+SL G+ +
Sbjct: 242 AQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKT 301
Query: 370 SLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQ 418
+ICT+TP + +ET L+FA +K+++ N++ ++ +
Sbjct: 302 RIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1150 | |||
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.89 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 96.28 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.92 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 94.82 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 91.3 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 90.9 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 90.65 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.17 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 89.03 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 87.19 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 85.99 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 83.05 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 82.71 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 81.71 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 81.46 |
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-89 Score=775.40 Aligned_cols=345 Identities=41% Similarity=0.617 Sum_probs=291.6
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCeEEEeeCC---CeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcC
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDEIAWYADG---DYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQG 150 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~---~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~G 150 (1150)
.+.+++|+|+|||||+++.|...+...++..++ ...+.. ..+.|.||+||+++++|++||+.+++|+|+++|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 345789999999999999998777655443332 222222 24689999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcC-CCceEEEEEeeeeeecchhhccCCCCCCceEEE
Q 001118 151 INGTVFAYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQET-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR 226 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~-~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~Ir 226 (1150)
||+||||||||||||||||+|... .+|||||++++||..+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 999999999999999999999643 5699999999999999754 467899999999999999999999988899999
Q ss_pred eCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeec
Q 001118 227 EDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305 (1150)
Q Consensus 227 Ed~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDL 305 (1150)
+|+. |++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+||||
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDL 239 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQKKLSGKLYLVDL 239 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT----TCCEEEEEEEEEEC
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC----CCCEeEEEEEEEEC
Confidence 9985 689999999999999999999999999999999999999999999999999876432 23467899999999
Q ss_pred CCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 306 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 306 AGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++|
T Consensus 240 AGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~E 319 (365)
T 2y65_A 240 AGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESE 319 (365)
T ss_dssp CCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHH
Confidence 99999 56899999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHH
Q 001118 385 THNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLK 425 (1150)
Q Consensus 385 TLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk 425 (1150)
|++||+||+|||.|+|+|.+|+..+.+.++++|++|++.|+
T Consensus 320 Tl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 320 TKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889888988887665
|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1150 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-78 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 5e-77 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-72 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 6e-72 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 3e-71 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 7e-67 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-64 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 6e-64 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-62 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 259 bits (661), Expect = 2e-78
Identities = 143/330 (43%), Positives = 191/330 (57%), Gaps = 14/330 (4%)
Query: 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRH 134
++ N+ V RFRPL+ EVN+GD+ G+ TV P Y FD+VF +T+
Sbjct: 2 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQ 58
Query: 135 VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKDVFGIIQ 191
VY+ A+ +V ++G NGT+FAYG TSSGKTHTM G+ P GIIP V+D+F I
Sbjct: 59 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 118
Query: 192 ETP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGTY-VEGIKEEVVLSPAHAL 249
EF ++VSY EIY + I DLLD + NL + ED V+G E V SP +
Sbjct: 119 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 178
Query: 250 SLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309
I G+ +RHV N N SSRSH+IF + ++ EN E +L L+DLAGSE
Sbjct: 179 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSE 234
Query: 310 S-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGR 368
SKT G E INKSL LG VIS L E +T++PYRDSK+TR+LQ SL G+ R
Sbjct: 235 KVSKTGAEGAVLDEAKNINKSLSALGNVISALA-EGSTYVPYRDSKMTRILQDSLGGNCR 293
Query: 369 ISLICTVTPASSNSEETHNTLKFAHRSKHV 398
+++ +P+S N ET +TL F R+K +
Sbjct: 294 TTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1150 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.17 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.84 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.79 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.64 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.09 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.2e-80 Score=700.84 Aligned_cols=342 Identities=32% Similarity=0.503 Sum_probs=292.0
Q ss_pred CeeeeeecCCCCcccccCCCeEEE-eeCCCeEE-ecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEE
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAW-YADGDYTV-RNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVF 156 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~-~~d~~~~v-~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIf 156 (1150)
+|+|+|||||+.+.|...+...++ ..++..+. .......+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~ 79 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF 79 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceeee
Confidence 589999999999999766554433 34444433 33444568899999999999999999975 7999999999999999
Q ss_pred EeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCCC---CceEEEeCCC-C
Q 001118 157 AYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPTG---QNLRIREDAQ-G 231 (1150)
Q Consensus 157 AYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~~---~~L~IrEd~~-G 231 (1150)
|||||||||||||+|+..++|||||++.+||..+.... ...|.|++||+|||||.|+|||.|.. ..+.+++++. |
T Consensus 80 aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~ 159 (364)
T d1sdma_ 80 AYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 159 (364)
T ss_dssp EECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSC
T ss_pred ccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCc
Confidence 99999999999999999999999999999999997644 47899999999999999999998754 3578899984 7
Q ss_pred cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCC-
Q 001118 232 TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES- 310 (1150)
Q Consensus 232 v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr- 310 (1150)
++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|+|.+...+ ......|+|+|||||||||
T Consensus 160 ~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~----~~~~~~~kl~~vDLAGsEr~ 235 (364)
T d1sdma_ 160 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIARGKLSFVDLAGSERV 235 (364)
T ss_dssp EEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCCSCC
T ss_pred cccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccC----cceeeeEEEEeechhhcccc
Confidence 89999999999999999999999999999999999999999999999999876543 3457889999999999999
Q ss_pred CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001118 311 SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLK 390 (1150)
Q Consensus 311 ~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLr 390 (1150)
.++++.|.+++|+.+||+||++||+||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+++||++||+
T Consensus 236 ~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~ 314 (364)
T d1sdma_ 236 KKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLT 314 (364)
T ss_dssp CC---------CCCTTCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHH
T ss_pred ccccccCceeeeccccccchhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHH
Confidence 5688999999999999999999999999999865 799999999999999999999999999999999999999999999
Q ss_pred HHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001118 391 FAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQ 429 (1150)
Q Consensus 391 FA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~ 429 (1150)
||+|||.|+|+|.+|...+ .+.+|+++|..|++++.
T Consensus 315 fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~~ 350 (364)
T d1sdma_ 315 YASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQAG 350 (364)
T ss_dssp HHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC-----
T ss_pred HHHHHhhcccCCcccCCHH---HHHHHHHHHHHHHHHHH
Confidence 9999999999999997642 35566666666666654
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| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
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| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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