Citrus Sinensis ID: 001144

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140-

MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQHEC

cccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccc

ccHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccEccccccccHHHHccHHccccccccccccEccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEHHHHcccccccccccHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHccc

mfllnkcrlkeehlSVGALYVLKhllprsseawhskRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHcyligpsgELFVEYLVRHCAlsdqkkyvnesskvkigafcpTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELcrhrssssnvmlseckarddipnpEELFARLVVLLHDPLAREQQATQILMVLYYlsplfptnidlfwqdeipkmkayvsdtedlkldpsyqeTWDDMIINFLAESLDVVQETDWLISLGNAFTeqyvlytpdddhsALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFsnsyrmeesDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINaaengasfplkkrDQLLDYILTLMgreendsfaDSSIELLHTQALALSACTtlvtvepkltieTRNHVMKATLgffalpndpidvvnPLIDNLITLLCAILLtsgedgrsRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIgycalgchgscthIKQIDRAVlgnfsnlpsayvlpsrealclgnrvimylprcadtdsEVRKISAQILDQLFSIslslprpvgsssgidlelsygalSSLEDVIAILRsdasidpseVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRgnelsetdvSRTTQSLLSAAVHITDKHLRLETLGAISClaentnskiVFNEVLATagkdivtkdisrlrggwpmqdaFHAFSQHAVLSFLFLEHLISAlnqtpfvkgdmekgdysshsadtwidDDILQAAILALTAFFrgggkvgkkAVEKSYAPVLAALTLQLGschglassgqhePLRAILTSFQAFCECVGDLEMRKILArdgeqndkEKWINLIGDVagcvsikrpkEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRhvsdesptvrglclrglvqipsihIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILkssskdavePILLNLSVRLRNLQHEC

mfllnkcrlkeehLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCrhrssssnvMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAengasfplkkrdQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIdqyvsspveyQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSdasidpseVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRgnelsetdvsrttQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARdgeqndkekWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTilkssskdavepILLNLSVRLRNLQHEC

MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRgggkvgkkavekSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREaaaaaLSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQHEC

**LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCRH********************PEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG***********TQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL*******

MFLL***RLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVR****************************AICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCR*****************DIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVS********PSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYV******DHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGIL*********************EESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVL**************REALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLP*****************************SDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTP********************DDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSC***********LRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ***

MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCR*********LSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGN*********TTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQHEC

MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQ**************FCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRP***SSGI*LELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFV***************TWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ**C

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1141	2.2.26 [Sep-21-2011]
Q54F23		1647	HEAT repeat-containing pr	yes	no	0.896	0.621	0.229	4e-66
Q8NDA8		1641	HEAT repeat-containing pr	yes	no	0.614	0.427	0.234	1e-50
A7E2Y6		1652	HEAT repeat-containing pr	yes	no	0.431	0.297	0.261	1e-39
A6NES4		1706	HEAT repeat-containing pr	no	no	0.617	0.413	0.210	4e-20
Q7Z745		1585	HEAT repeat-containing pr	no	no	0.432	0.311	0.228	2e-19
D3Z750		1679	HEAT repeat-containing pr	no	no	0.405	0.275	0.213	9e-19
Q7M6Y6		1581	HEAT repeat-containing pr	no	no	0.347	0.250	0.224	9e-17

>sp\|Q54F23\|HTR7A_DICDI HEAT repeat-containing protein 7A homolog OS=Dictyostelium discoideum GN=heatr7a PE=4 SV=1	Back alignment and function desciption

 Score =  254 bits (648), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 270/1178 (22%), Positives = 514/1178 (43%), Gaps = 155/1178 (13%)

Query: 17   GALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLD-EQNLAVQKAISELIVVMASHCYLIGP 75
            G+L +++H++ R       K+PL+L A+K L+  E +L ++K ++++I+ MA + YL   
Sbjct: 375  GSLSIIRHIVTRLDVELADKKPLILSAIKPLIQTEPSLFIKKYLAQIIIAMAPYGYLEME 434

Query: 76   SGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPT----------------ELRAICEK 119
             G   +E++V+  +      +  +S   +IG   PT                ELR IC+ 
Sbjct: 435  GGLTLLEFIVKGSS------WYQDS---EIGKAQPTQPPKKIENPDLHVTDSELRLICDN 485

Query: 120  GLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELC-RHRSSSSNVMLSECK 178
             L L+T T+P+++ ILWP L + I+P  YT+A   V + ++ +    +S  S+    +  
Sbjct: 486  ILNLITTTMPQLESILWPYLFEFILPEQYTAAIPVVTKSLTYIALSKKSVDSDDYYIDFD 545

Query: 179  ARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKA 238
               ++P P ++ AR  VLL  PL R Q   +IL  +  + P+   +I   W   +PK+ +
Sbjct: 546  KEINLPKPTQIIARYFVLLTAPLRRNQLGIRILENMKAIGPILHPSICDMWDVTLPKLIS 605

Query: 239  YVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHS 298
            Y+ D  D++     Q  W+++++  L+E++    + +W ++LGN+ +EQ   Y  D    
Sbjct: 606  YLEDHTDIETWNKNQ--WEELVLRLLSETIKNAADDEWTVALGNSMSEQIDHYKKDPILK 663

Query: 299  ALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEM 358
              L++ +G+++QK + + +V  KI+ M+   +        G A  +G   ASH D VLE 
Sbjct: 664  RSLYKQMGLIMQKCSHKEFVKSKIEVMFTSVDYTNSLENEGCAIGLGYCGASHFDIVLEK 723

Query: 359  LKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALV 418
            +   + N   S+ ++     S  +  +    I   + L  GY+A YA S +  +R++  V
Sbjct: 724  INFYIKN---SMVKK-----SGFFGKKGPKGIKNCILLSLGYSATYAQSALFSSRVEVHV 775

Query: 419  GTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGRE 478
               +   +L ++    K + I  IDL+G+A+       ++F  K+RD+L+  +++ M   
Sbjct: 776  IQPIKPSILQLKKVPKKLSSIKMIDLIGKAL--HPNKASTFIFKQRDELMKLLISYMSTP 833

Query: 479  ENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDV-- 536
               +     I+         +AC+TLV +EP +++E    ++  +L FF     P +   
Sbjct: 834  PPSTNNQVKID-------GTNACSTLVNLEPMISLELEVQIINLSLSFFNQQVSPANATN 886

Query: 537  --------VNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRS 588
                    VN LI ++  LL  IL       ++    L  ++  +D    S   + R RS
Sbjct: 887  TDSDEYKEVNSLITSVNNLLSTILY-----NQTTIACLNRLIGYLDPLSRSKDAHIRERS 941

Query: 589  CLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLG 648
               +  ++ KF     I Y                     +  ++P+  +  S     +G
Sbjct: 942  LFCILYLVKKF-----IEYST-------------------DSDSMPTDKLFDS-----IG 972

Query: 649  NRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDV 708
              + + +PRC D +  VR+ + + +  +  I   L      +  +        L+S+ D 
Sbjct: 973  TTLSVLIPRCTDPEINVRRYAVESIQLILYIGFMLKNATPDNRRVKPSEVLHPLTSIRDS 1032

Query: 709  IAILRSDASIDPSEVFNRIVSSVCILLTK----DELVATLHSCTTAICDRTKQSAEGAIQ 764
            I       + + +E F+ +V  + ++++K    +E+   L      + D    S  G+  
Sbjct: 1033 I------TTTEVNEQFS-LVFEISVIISKMISLEEIPKFLEGSIKGLQDLQAFSTNGSCI 1085

Query: 765  AVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNE 824
             +   +  RG EL E  V    + LL+A   IT +     TL ++  LA N +   V + 
Sbjct: 1086 IINGLIKTRGEELIEY-VPILVKGLLTAMEGITSETTMNGTLVSLRSLA-NHHLIPVLSV 1143

Query: 825  VLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS------FLFLEHLISALNQTPFV 878
            +L                  +PM  + H      +++         L HL+  LN  P  
Sbjct: 1144 LLE-----------------YPMPHSVHVIKSFQIIAKDKNLISPTLIHLMDLLNNKPVY 1186

Query: 879  KGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQL 938
            +   EK D  + +        I  AA  +L   F+      ++ V+  Y  +++ L L+ 
Sbjct: 1187 E---EKPDPKNKNRIIPQPFAIALAATCSLGEIFQLTEV--EEVVKYFYHQLISTLVLRA 1241

Query: 939  GSCHG-------LASSGQHE--------PLRAILTSFQAFCECVGDLE--MRKILARDG- 980
            G+C+        +AS+            P + +L +F+ F +C  + E  + +I ++   
Sbjct: 1242 GTCNNSLPCLIEVASTNPKAKASAISLIPSQQMLVTFRQFFKCTKEEETLLAEIESKGSF 1301

Query: 981  EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS 1040
             Q +   +   I ++   VS   P  +Q I   L           R    +  +E + + 
Sbjct: 1302 SQLETPFYHQGIIEILSVVSSHHPDLIQGIFQYLLPYQRSNHLEHRIVTISVTTELINHC 1361

Query: 1041 GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ---YATQVLSVILALLD 1097
                 L+++++  L   + D  P V+ + L+GL  I S  + Q   YA  V+  +   +D
Sbjct: 1362 KD-KELIQRLINTLLNSLVD--PLVKLISLKGLSNIVSAGVEQTNRYAPTVIDALSTSID 1418

Query: 1098 DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135
            D DE++ +  +  L  I + + +  V PIL+N+  R+R
Sbjct: 1419 DQDETMAMECMLGLSKIFEVADEGRVAPILVNICNRIR 1456

Dictyostelium discoideum (taxid: 44689)

>sp\|Q8NDA8\|HTR7A_HUMAN HEAT repeat-containing protein 7A OS=Homo sapiens GN=HEATR7A PE=2 SV=3	Back alignment and function description

>sp\|A7E2Y6\|HRT7A_BOVIN HEAT repeat-containing protein 7A OS=Bos taurus GN=HEATR7A PE=2 SV=1	Back alignment and function description

>sp\|A6NES4\|HTRB1_HUMAN HEAT repeat-containing protein 7B1 OS=Homo sapiens GN=HEATR7B1 PE=4 SV=3	Back alignment and function description

>sp\|Q7Z745\|HTRB2_HUMAN HEAT repeat-containing protein 7B2 OS=Homo sapiens GN=HEATR7B2 PE=2 SV=3	Back alignment and function description

>sp\|D3Z750\|HTRB1_MOUSE HEAT repeat-containing protein 7B1 OS=Mus musculus GN=Heatr7b1 PE=4 SV=2	Back alignment and function description

>sp\|Q7M6Y6\|HTRB2_MOUSE HEAT repeat-containing protein 7B2 OS=Mus musculus GN=Heatr7b2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1141
255556820		1722	conserved hypothetical protein [Ricinus	0.996	0.660	0.832	0.0
297739996		1722	unnamed protein product [Vitis vinifera]	0.997	0.660	0.823	0.0
359482278		1720	PREDICTED: LOW QUALITY PROTEIN: HEAT rep	0.997	0.661	0.825	0.0
240254592		1716	uncharacterized protein [Arabidopsis tha	0.990	0.658	0.767	0.0
356570788		1723	PREDICTED: LOW QUALITY PROTEIN: HEAT rep	0.993	0.658	0.777	0.0
449451072		1712	PREDICTED: LOW QUALITY PROTEIN: HEAT rep	0.995	0.663	0.774	0.0
222624190		1687	hypothetical protein OsJ_09403 [Oryza sa	0.994	0.672	0.640	0.0
218192091		1650	hypothetical protein OsI_10014 [Oryza sa	0.994	0.687	0.638	0.0
357510847		1835	HEAT repeat-containing protein 7A [Medic	0.658	0.409	0.742	0.0
168035831		1855	predicted protein [Physcomitrella patens	0.981	0.603	0.440	0.0

>gi\|255556820\|ref\|XP_002519443.1\| conserved hypothetical protein [Ricinus communis] gi\|223541306\|gb\|EEF42857.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1972 bits (5110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 955/1147 (83%), Positives = 1046/1147 (91%), Gaps = 10/1147 (0%)

Query: 2    FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISE 61
            FLLNKCRLKEE L+ GAL VLKHLLPRSSEAWH+KRPLL+E VKSLLDEQNL V++A+SE
Sbjct: 365  FLLNKCRLKEESLTFGALCVLKHLLPRSSEAWHNKRPLLVEVVKSLLDEQNLGVRRALSE 424

Query: 62   LIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKV----------KIGAFCPT 111
            LIVVMASHCYL+GPSGELF+EYLVRHCALSD ++   ++SKV          K+ +FCP 
Sbjct: 425  LIVVMASHCYLVGPSGELFIEYLVRHCALSDLERNDPDNSKVDSGSTCFLQVKLRSFCPI 484

Query: 112  ELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSN 171
            ELR ICEKGLLLLTITIPEM++ILWP LL MIIPR YT A ATVCRCISELCRHRSS+  
Sbjct: 485  ELRGICEKGLLLLTITIPEMEYILWPFLLTMIIPRIYTGAVATVCRCISELCRHRSSNIG 544

Query: 172  VMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231
             MLSECKAR DIP+PEELFARL+VLLHDPLAREQ AT IL VL YL+PL P NI++FWQD
Sbjct: 545  GMLSECKARPDIPSPEELFARLLVLLHDPLAREQLATHILTVLCYLAPLLPKNINMFWQD 604

Query: 232  EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
            EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDV+Q+TDW+ISLGNAFT QY LY
Sbjct: 605  EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVIQDTDWVISLGNAFTNQYELY 664

Query: 292  TPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASH 351
            TPDD+H+ALLHRCLG+LLQKV +R YV +KIDWMYKQANIAIPTNRLGLAKAMGLVAASH
Sbjct: 665  TPDDEHAALLHRCLGMLLQKVDNRAYVQNKIDWMYKQANIAIPTNRLGLAKAMGLVAASH 724

Query: 352  LDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIE 411
            LD VLE LK IL N+GQS+FQRLLS FS+SY+ EESDDIHAALALMYGYAA+YAPSTVIE
Sbjct: 725  LDTVLEKLKEILANVGQSIFQRLLSLFSDSYKTEESDDIHAALALMYGYAARYAPSTVIE 784

Query: 412  ARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYI 471
            ARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLK+RDQLLDYI
Sbjct: 785  ARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKRRDQLLDYI 844

Query: 472  LTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPN 531
            LTLMGR++ND FADSS+ELLHTQALALSACTTLV+VEPKLTIETRNHVMKATLGFFALPN
Sbjct: 845  LTLMGRDDNDDFADSSLELLHTQALALSACTTLVSVEPKLTIETRNHVMKATLGFFALPN 904

Query: 532  DPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLA 591
            +P+DVVNPLIDNLITLLCAILLTSGEDGRSRA+QLLHILRQID YVSSPVEYQRRR CLA
Sbjct: 905  EPVDVVNPLIDNLITLLCAILLTSGEDGRSRAEQLLHILRQIDHYVSSPVEYQRRRGCLA 964

Query: 592  VYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRV 651
            V+EML+KFR LCV GYCA GCHG+CTH KQIDR +  NFSNLPSA+VLPSREALCLG R+
Sbjct: 965  VHEMLIKFRMLCVSGYCAFGCHGNCTHSKQIDRTLHSNFSNLPSAFVLPSREALCLGERI 1024

Query: 652  IMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAI 711
             MYLPRCADT+SEVRK+SAQILD+LFSISLSLP+P GSS G+D+EL Y ALSSLEDVIA+
Sbjct: 1025 FMYLPRCADTNSEVRKVSAQILDKLFSISLSLPKPGGSSFGVDMELLYSALSSLEDVIAM 1084

Query: 712  LRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVT 771
            LRSDASIDPSEVFNRI+SSVC+LLTK+ELV TLH CT AICD+ K SAEGAIQAV+EFV+
Sbjct: 1085 LRSDASIDPSEVFNRIISSVCVLLTKNELVVTLHGCTGAICDKIKPSAEGAIQAVIEFVS 1144

Query: 772  KRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGK 831
            KRG ELSETDVSRTTQSLLSA VH+T+KHLRLETLGAIS LAE+T+ KIVF+EVLATA +
Sbjct: 1145 KRGKELSETDVSRTTQSLLSAVVHVTEKHLRLETLGAISSLAESTSPKIVFDEVLATAAR 1204

Query: 832  DIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHS 891
            DIVTKDISRLRGGWPMQ+AF+AFSQH VLSF FLEHL S LNQ+P +KGD+EKGD SSH 
Sbjct: 1205 DIVTKDISRLRGGWPMQEAFYAFSQHIVLSFQFLEHLTSVLNQSPVIKGDLEKGDSSSHF 1264

Query: 892  ADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHE 951
            AD  I+DDILQAA+LALTAFFRGGGKVGKKAVE++YA VLAAL LQ GSCHGLASSG+HE
Sbjct: 1265 ADGQIEDDILQAAVLALTAFFRGGGKVGKKAVEQNYASVLAALILQFGSCHGLASSGRHE 1324

Query: 952  PLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTIC 1011
            PLRA+LT+FQAFCECVGDLEM KILARDGEQN+K KWI LIG VAG +SIKRPKEVQTI 
Sbjct: 1325 PLRALLTAFQAFCECVGDLEMGKILARDGEQNEKVKWITLIGGVAGNISIKRPKEVQTIS 1384

Query: 1012 LILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLR 1071
            LILTKS+NR Q FQREAAAA+LSEFVRYSGGF SLL++MVEALCRHVSDESPTVR LCLR
Sbjct: 1385 LILTKSLNRHQSFQREAAAASLSEFVRYSGGFTSLLDEMVEALCRHVSDESPTVRCLCLR 1444

Query: 1072 GLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131
            GLVQIPSIHI QY TQ+LSVI+ALLDD DESVQLTAVSCLLT+L+SS  DAV+PILLNLS
Sbjct: 1445 GLVQIPSIHICQYTTQILSVIVALLDDSDESVQLTAVSCLLTVLESSPNDAVDPILLNLS 1504

Query: 1132 VRLRNLQ 1138
            VRLRNLQ
Sbjct: 1505 VRLRNLQ 1511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297739996\|emb\|CBI30178.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359482278\|ref\|XP_003632748.1\| PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|240254592\|ref\|NP_181219.4\| uncharacterized protein [Arabidopsis thaliana] gi\|330254206\|gb\|AEC09300.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356570788\|ref\|XP_003553566.1\| PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449451072\|ref\|XP_004143286.1\| PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Cucumis sativus] gi\|449482389\|ref\|XP_004156267.1\| PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|222624190\|gb\|EEE58322.1\| hypothetical protein OsJ_09403 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|218192091\|gb\|EEC74518.1\| hypothetical protein OsI_10014 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|357510847\|ref\|XP_003625712.1\| HEAT repeat-containing protein 7A [Medicago truncatula] gi\|355500727\|gb\|AES81930.1\| HEAT repeat-containing protein 7A [Medicago truncatula]	Back alignment and taxonomy information

>gi\|168035831\|ref\|XP_001770412.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162678289\|gb\|EDQ64749.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1141
TAIR\|locus:2040585		1716	AT2G36810 [Arabidopsis thalian	0.990	0.658	0.753	0.0
DICTYBASE\|DDB_G0291161		1647	DDB_G0291161 "HEAT repeat-cont	0.504	0.349	0.258	6.9e-60
MGI\|MGI:3705228		1679	Mroh2a "maestro heat-like repe	0.510	0.347	0.215	1.3e-18
MGI\|MGI:1921905		1581	Mroh2b "maestro heat-like repe	0.445	0.321	0.211	1.1e-15
FB\|FBgn0040236		1742	c11.1 "c11.1" [Drosophila mela	0.131	0.086	0.259	7.9e-11

TAIR\|locus:2040585 AT2G36810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4439 (1567.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 867/1150 (75%), Positives = 992/1150 (86%)

Query:     2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISE 61
             FLLNKC+LKE+ L+ GAL +LKHLLPR  EAWHSKRPLL++   SLLDEQ+LAV+KA+SE
Sbjct:   363 FLLNKCKLKEDPLTFGALCILKHLLPRLFEAWHSKRPLLVDTASSLLDEQSLAVRKALSE 422

Query:    62 LIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGL 121
             LIVVMASHCYL+GPSGELFVEYLVRH A+ +     ++  K K     PT+LRA+C KGL
Sbjct:   423 LIVVMASHCYLVGPSGELFVEYLVRHSAIGE-----SDHLKAKGELVSPTQLRAVCGKGL 477

Query:   122 LLLTITIPEM-------------QHILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSS 168
             LLLT+TIPEM             Q+ILWP LLKMIIP+ YT A A+VCRCI+ELCR RSS
Sbjct:   478 LLLTVTIPEMELSDFNAKEYMKLQYILWPFLLKMIIPKVYTGAVASVCRCITELCRRRSS 537

Query:   169 SSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLF 228
             ++  ML ECKAR DIPNPEELF RLVVLLH+PLA+EQ A+QIL VL YLSPLFP NI +F
Sbjct:   538 TTP-MLIECKARADIPNPEELFTRLVVLLHNPLAKEQLASQILTVLGYLSPLFPKNISMF 596

Query:   229 WQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQY 288
             WQDEIPKMKAYV DTEDLKLDP+YQETWDDMIINFLAESLDV Q+ DW+ISLGN+F +QY
Sbjct:   597 WQDEIPKMKAYVYDTEDLKLDPTYQETWDDMIINFLAESLDVTQDADWVISLGNSFAKQY 656

Query:   289 VLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVA 348
             +LY PDDDH+ALLHRC+GILLQKV DR YV DKIDWMY+QA+I+IP NRLGLAKAMGLVA
Sbjct:   657 ILYAPDDDHAALLHRCIGILLQKVNDRAYVRDKIDWMYEQADISIPANRLGLAKAMGLVA 716

Query:   349 ASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPST 408
             ASHLD VLE LK I+DN+GQS+FQR+LS FS SY+ E+SDDIHAALALMYGYAAKYAPS+
Sbjct:   717 ASHLDTVLEKLKIIVDNVGQSIFQRILSLFSESYKTEDSDDIHAALALMYGYAAKYAPSS 776

Query:   409 VIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLL 468
             VIEARIDALVGTNMLSRLLHVR  TAKQAVITAIDLLGRAVINAAE GA+FPLK+RDQ+L
Sbjct:   777 VIEARIDALVGTNMLSRLLHVRQQTAKQAVITAIDLLGRAVINAAETGATFPLKRRDQML 836

Query:   469 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFA 528
             DYILTLMGR+EN+ FA+SS+E+LHTQALAL+ACTTLV+VEPKLTIETRN VMKATLGFFA
Sbjct:   837 DYILTLMGRDENEGFAESSLEVLHTQALALNACTTLVSVEPKLTIETRNRVMKATLGFFA 896

Query:   529 LPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRS 588
             LPNDP DV++PLIDNL+TLLCAILLTSGEDGRSRA+QLLH+LRQ+DQYVSSP++YQR+R 
Sbjct:   897 LPNDPSDVISPLIDNLVTLLCAILLTSGEDGRSRAEQLLHLLRQLDQYVSSPIDYQRKRG 956

Query:   589 CLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLG 648
             C+AV+EMLLKFR LCV GYCALGC G C H K  DR++ GNFSNLPS ++ P RE LCLG
Sbjct:   957 CVAVHEMLLKFRKLCVGGYCALGCSGDCPHRKYADRSMQGNFSNLPSVFLFPDREVLCLG 1016

Query:   649 NRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDV 708
             +RVI YLPRCADT+SEVRKISAQILDQ FSISLSLP+ V  +SG+D E SY ALSSLEDV
Sbjct:  1017 DRVITYLPRCADTNSEVRKISAQILDQFFSISLSLPKAV-LTSGLDSEDSYKALSSLEDV 1075

Query:   709 IAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVE 768
             IAIL+SDASIDPSEVFNRIVSS+C LLT+ ELVA LHSCT AICD+ +QSAEGAIQAV E
Sbjct:  1076 IAILKSDASIDPSEVFNRIVSSICSLLTEHELVAALHSCTAAICDKIRQSAEGAIQAVTE 1135

Query:   769 FVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLAT 828
             FV++RG++LS+ D+SRTT SLLSAAVHITDK+LR+E +GAIS LAENT S IVFNEVLAT
Sbjct:  1136 FVSRRGSQLSDNDISRTTHSLLSAAVHITDKNLRVEAIGAISALAENTQSSIVFNEVLAT 1195

Query:   829 AGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYS 888
             AGKDIVTKDI+R+RGGWPMQDAF+AFSQH  LS LF+EHLIS LN++  VK D  KG+ +
Sbjct:  1196 AGKDIVTKDITRMRGGWPMQDAFYAFSQHTELSVLFMEHLISILNRSSLVKSDSHKGENT 1255

Query:   889 SHSADTWIDDDILQAAILALTAFFRXXXXXXXXXXXXSYAPVLAALTLQLGSCHGLASSG 948
             S S++T ++DDILQAAI ALTAFFR            SY+ V+ ALTLQLGSCHGLASSG
Sbjct:  1256 SSSSETHVEDDILQAAIFALTAFFRGGGKIGKKAVEKSYSSVVGALTLQLGSCHGLASSG 1315

Query:   949 QHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQ 1008
             Q +PLR +LTSFQAFCECVGDLEM KILAR+GEQ +KEKW+ LIGD+AGC+SIKRPKEV+
Sbjct:  1316 QQDPLRVLLTSFQAFCECVGDLEMGKILARNGEQIEKEKWVGLIGDIAGCISIKRPKEVR 1375

Query:  1009 TICLILTKSINRQQRFQREXXXXXLSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL 1068
              IC+ILTK++NR QRFQRE     LSEF+RYSG F S++E+MVEALCRHVSD+SPTVR L
Sbjct:  1376 HICMILTKALNRPQRFQREAAAAALSEFIRYSGDFSSVMEEMVEALCRHVSDDSPTVRRL 1435

Query:  1069 CLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1128
             CLRGLVQ+PS  +  Y TQV+ VILALLDDLDESVQLTAVSCLL + +S+S DAVEPILL
Sbjct:  1436 CLRGLVQMPSACMSHYTTQVIGVILALLDDLDESVQLTAVSCLLMVTESASNDAVEPILL 1495

Query:  1129 NLSVRLRNLQ 1138
             NLSVRLRNLQ
Sbjct:  1496 NLSVRLRNLQ 1505

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

DICTYBASE\|DDB_G0291161 DDB_G0291161 "HEAT repeat-containing protein 7A" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:3705228 Mroh2a "maestro heat-like repeat family member 2A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1921905 Mroh2b "maestro heat-like repeat family member 2B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0040236 c11.1 "c11.1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1141
KOG2032		533	consensus Uncharacterized conserved protein [Funct	99.95
KOG2032		533	consensus Uncharacterized conserved protein [Funct	99.01
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.6
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.59
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.66
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.21
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.58
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.35
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	95.57
PTZ00429		746	beta-adaptin; Provisional	95.15
PTZ00429		746	beta-adaptin; Provisional	94.81
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.52
KOG1242		569	consensus Protein containing adaptin N-terminal re	94.5
KOG0212		675	consensus Uncharacterized conserved protein [Funct	94.48
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	94.3
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.46
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	93.37
PF05004		309	IFRD: Interferon-related developmental regulator (	93.24
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	93.17
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	92.39
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	92.23
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	91.83
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	91.82
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	91.56
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.5
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	90.41
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	89.99
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	89.51
PRK09687		280	putative lyase; Provisional	89.31
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	88.97
COG5096		757	Vesicle coat complex, various subunits [Intracellu	88.8
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	88.05
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.7
KOG0212		675	consensus Uncharacterized conserved protein [Funct	87.3
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	85.87
PRK09687		280	putative lyase; Provisional	84.78
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	84.64
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	83.83
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	82.61
COG5096		757	Vesicle coat complex, various subunits [Intracellu	82.42
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	82.34
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	82.05
KOG1242		569	consensus Protein containing adaptin N-terminal re	81.95
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	81.82
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	81.4
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	80.86

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=99.95  E-value=8e-28  Score=272.02  Aligned_cols=315  Identities=19%  Similarity=0.146  Sum_probs=281.5

Q ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhh----HHHHhhcCcchHHHHHHHHHHHHccC
Q 001144          800 HLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQT  875 (1141)
Q Consensus       800 ~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~----~W~aLa~~~~l~~~vL~~LL~~L~~~  875 (1141)
                      ++-+....++.++...|.-.++. ...               .+++|.+.    .|....-.+....+++..++..+.. 
T Consensus         9 svlqa~qdsv~l~h~~h~~a~~~-~~~---------------s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~-   71 (533)
T KOG2032|consen    9 SVLEARQDSVVLLHVRHQTAKQA-VIT---------------AIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR-   71 (533)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH-HHH---------------cccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-
Confidence            34455566777888888888886 788               89999987    7999999999999999999988764 


Q ss_pred             CCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCC--------
Q 001144          876 PFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS--------  947 (1141)
Q Consensus       876 p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~--------  947 (1141)
                      ..+       .+++.....+.+++.++-||++++|+..+.  +....|-..|||||.-+|+..++++++..+        
T Consensus        72 ~~~-------a~sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r  142 (533)
T KOG2032|consen   72 EGF-------AESLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSR  142 (533)
T ss_pred             hhh-------hhhhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHH
Confidence            111       112223334568888999999999999999  999999999999999999999999998544        


Q ss_pred             ---------CCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCC-CC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHH
Q 001144          948 ---------GQHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLIL 1014 (1141)
Q Consensus       948 ---------~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~-W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L 1014 (1141)
                               .-..||+.+..+++.+...++.+.+.+..+..++ |.   ++.+|+.|++-++|.|..+.+..++.|+.++
T Consensus       143 ~~~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~  222 (533)
T KOG2032|consen  143 LEDVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQL  222 (533)
T ss_pred             HHhHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhc
Confidence                     1368899999999999999999999999999888 98   8999999999999999999999999999999


Q ss_pred             HhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHH
Q 001144         1015 TKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLS 1090 (1141)
Q Consensus      1015 ~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~ 1090 (1141)
                      .....|..+.+|++.+|||+|+.+.+. +..+++..++..|.+..+|||..+|.++.|||||++.+   |++.|.++++.
T Consensus       223 ~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ld  302 (533)
T KOG2032|consen  223 LSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLD  302 (533)
T ss_pred             ccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHH
Confidence            999999999999999999999999998 77788999999999999999999999999999999876   99999999999


Q ss_pred             HHHhhccCCC-hhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcccccc
Q 001144         1091 VILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQHE 1140 (1141)
Q Consensus      1091 all~~l~d~~-~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR~l~~~ 1140 (1141)
                      +++.|++|.+ ++|++|||.+|.++++.....++++++++|+.|+|+|+.+
T Consensus       303 aii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s  353 (533)
T KOG2032|consen  303 AIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS  353 (533)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh
Confidence            9999999954 4999999999999999999999999999999999999864

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1141
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	5e-08
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-05
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-06
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-04
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 70.3 bits (171), Expect = 3e-12
 Identities = 74/530 (13%), Positives = 158/530 (29%), Gaps = 174/530 (32%)

Query: 242 DTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQ---YVLYTPDDDHS 298
           D E  +    Y++        F+ ++ D     D      +  +++   +++ + D    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFV-DNFDCKDVQD---MPKSILSKEEIDHIIMSKDAVSG 63

Query: 299 ALLHRCLGILLQK-----------VADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLV 347
            L  R    LL K           V   NY      ++     I                
Sbjct: 64  TL--RLFWTLLSKQEEMVQKFVEEVLRINY-----KFLMSP--IKTEQR----------- 103

Query: 348 AASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAAL---------AL-- 396
             S +  +    +  L N  Q   +       N  R++    +  AL          +  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 397 MYGYAAKYAPST-VIEARIDALVGTNMLSRL--LHVRHHTAKQAVITAI-DLLGRAVINA 452
           + G + K   +   ++  +   V   M  ++  L++++  + + V+  +  LL +   N 
Sbjct: 158 VLG-SGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 453 AENG-ASFPLKKR-DQLLDYILTLMGREENDSFADSSIELL---------HTQALALSAC 501
                 S  +K R   +   +  L+  +    + +    LL            A  LS C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENC---LLVLLNVQNAKAWNAFNLS-C 266

Query: 502 TTLVT-----VEPKLTIETRNHVM----------KATLGFFA---------LPNDPIDVV 537
             L+T     V   L+  T  H+                            LP + +   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT- 325

Query: 538 NPLIDNLITLLCAILLTSGEDGRSRADQLLHIL-----RQIDQYVS--SPVEYQRRRSCL 590
           NP     ++++   +     DG +  D   H+        I+  ++   P EY++     
Sbjct: 326 NPR---RLSIIAESI----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---- 374

Query: 591 AVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNR 650
             ++ L                            +V    +++P+  +L           
Sbjct: 375 --FDRL----------------------------SVFPPSAHIPTI-LL----------- 392

Query: 651 VIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGI-DLELSY 699
            +++        S+V      ++++L   SL   +P  S+  I  + L  
Sbjct: 393 SLIW---FDVIKSDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1141
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.35
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.25
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.23
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.22
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.06
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.96
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.88
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.81
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.81
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.8
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.84
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.5
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.49
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.03
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	96.68
2x1g_F		971	Cadmus; transport protein, developmental protein,	96.59
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.55
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.44
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.39
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.33
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	96.21
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.12
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	96.06
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.84
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	95.57
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.52
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.52
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.45
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.39
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	95.04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	94.98
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.91
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.33
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	94.28
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.16
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.86
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.77
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	93.77
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.63
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.55
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	93.23
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.23
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.83
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.71
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	92.68
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	92.6
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	91.89
2x19_B		963	Importin-13; nuclear transport, protein transport;	90.75
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	90.36
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	90.12
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	89.52
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	89.47
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	88.96
2x19_B		963	Importin-13; nuclear transport, protein transport;	88.93
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	88.52
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	88.19
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	87.48
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	86.65
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	85.34
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	85.32
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	84.02
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	83.89
2x1g_F		971	Cadmus; transport protein, developmental protein,	83.26
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	82.49
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	82.03
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	80.1

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

Probab=99.35  E-value=1.3e-07  Score=125.61  Aligned_cols=900  Identities=13%  Similarity=0.111  Sum_probs=454.4

Q ss_pred             hhhhhcccccchhHHHHHHHhhhcCCCchh------hhcchHHHHHHHHHhhh-hccHHHHHHHHHHHHHHhhcc--ccc
Q 001144            3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEA------WHSKRPLLLEAVKSLLD-EQNLAVQKAISELIVVMASHC--YLI   73 (1141)
Q Consensus         3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~------~~~k~~~i~~~vk~~l~-d~~~kVr~al~~~I~ama~~~--yl~   73 (1141)
                      ++..+.+.++..|-++...++.+.....+.      .....+.++..+-..+. +.+..+|...+.++..++...  .+.
T Consensus        91 Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~  170 (1230)
T 1u6g_C           91 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV  170 (1230)
T ss_dssp             HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH
Confidence            455667778888999999888887644432      22234566666666666 478899999999998888641  111


Q ss_pred             CcccccceeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchh-hhHhhHHHHHhhcccccccchh
Q 001144           74 GPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE-MQHILWPLLLKMIIPRAYTSAA  152 (1141)
Q Consensus        74 ~~~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~-m~~vLWP~LL~~i~p~~yT~al  152 (1141)
                      .. -..++..++...                 . .+...+|..+..++..+....+. +-.-+-|.|++++....-...-
T Consensus       171 ~~-~~~ll~~l~~~L-----------------~-~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r  231 (1230)
T 1u6g_C          171 NF-HPSILTCLLPQL-----------------T-SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTT  231 (1230)
T ss_dssp             TT-HHHHHHHHGGGG-----------------G-CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSC
T ss_pred             HH-HHHHHHHHHHHH-----------------c-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHH
Confidence            10 011222222211                 0 01347899888888887766532 1123345555555433222344


Q ss_pred             hhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHHHh
Q 001144          153 ATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDE  232 (1141)
Q Consensus       153 ~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~  232 (1141)
                      ...|.++..++.....       .|.  ..++   .++--++-.+.++. .+- -..++..+..+.......+.+....-
T Consensus       232 ~~a~~~l~~l~~~~~~-------~~~--~~l~---~l~~~ll~~l~d~~-~~v-R~~a~~~l~~l~~~~~~~~~~~l~~l  297 (1230)
T 1u6g_C          232 RTYIQCIAAISRQAGH-------RIG--EYLE---KIIPLVVKFCNVDD-DEL-REYCIQAFESFVRRCPKEVYPHVSTI  297 (1230)
T ss_dssp             TTHHHHHHHHHHHSSG-------GGT--TSCT---THHHHHHHHHSSCC-TTT-HHHHHHHHHHHHHCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHH-------HHH--HHHH---HHHHHHHHHhcCCC-HHH-HHHHHHHHHHHHHHChHHHHHhHHHH
Confidence            4578888888865321       111  0122   34444444444432 111 23444555555555566667788888


Q ss_pred             hhhhhhcccccccCCCCcchHhhHHHHHHHH-HH-------HhhhhhccchHHHHHH-HHHHhhhc-c------------
Q 001144          233 IPKMKAYVSDTEDLKLDPSYQETWDDMIINF-LA-------ESLDVVQETDWLISLG-NAFTEQYV-L------------  290 (1141)
Q Consensus       233 IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~f-L~-------~sl~~i~d~~W~~~L~-~el~~ql~-~------------  290 (1141)
                      +|.+++++........+  ....|.+..-+. ..       +....-+|..|..+-+ .+....+. .            
T Consensus       298 i~~ll~~l~~d~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l  375 (1230)
T 1u6g_C          298 INICLKYLTYDPNYNYD--DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV  375 (1230)
T ss_dssp             HHHHTTCCCCC--------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTT
T ss_pred             HHHHHHHhCCCCCCCCc--ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            99999888532110000  001121110000 00       0000112334653221 11111111 1            


Q ss_pred             --------CCCChhhHHHHHHHHHHHHhhcCC-----------------hhHHHHHHHHHHHh----cccCCccchhhHH
Q 001144          291 --------YTPDDDHSALLHRCLGILLQKVAD-----------------RNYVCDKIDWMYKQ----ANIAIPTNRLGLA  341 (1141)
Q Consensus       291 --------y~~~~~eK~fL~k~lG~~L~~~~~-----------------~~~V~~~L~~ll~~----~~~~~~~ereG~A  341 (1141)
                              ....+.-+.-.+++++.++....+                 ...+..++..++..    .+..++..|+++.
T Consensus       376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~  455 (1230)
T 1u6g_C          376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF  455 (1230)
T ss_dssp             HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence                    122344455667777777765432                 23444555544443    4455666789999


Q ss_pred             HHHHHHhhc-------CHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHH
Q 001144          342 KAMGLVAAS-------HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI  414 (1141)
Q Consensus       342 ~~~G~~A~~-------Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rv  414 (1141)
                      .++|-++..       |++.++..+.+.               +++++.   ...++...+..++.+.....++.+.+.+
T Consensus       456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~---------------L~d~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~l  517 (1230)
T 1u6g_C          456 NMLTELVNVLPGALTQHIPVLVPGIIFS---------------LNDKSS---SSNLKIDALSCLYVILCNHSPQVFHPHV  517 (1230)
T ss_dssp             HHHHHHHHHSTTTTGGGHHHHHHHHHHH---------------TTCSSS---CHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHHH---------------HcCCCC---cchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence            999877663       444444444332               233321   2357777888888888777777666666


Q ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCC-CCHHHHHHHHHHHhccCCCCCcCCchHHHHHH
Q 001144          415 DALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPL-KKRDQLLDYILTLMGREENDSFADSSIELLHT  493 (1141)
Q Consensus       415 e~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f-~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~  493 (1141)
                      +. +++.++..+. .+...++...+.++..+.+++.+.. ......| ...++++..++..++....+    +     .+
T Consensus       518 ~~-llp~L~~~l~-d~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~ll~~ll~~l~~~d~~----~-----~v  585 (1230)
T 1u6g_C          518 QA-LVPPVVACVG-DPFYKITSEALLVTQQLVKVIRPLD-QPSSFDATPYIKDLFTCTIKRLKAADID----Q-----EV  585 (1230)
T ss_dssp             TT-THHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCCSS-SCCCCCCHHHHHHHHHHHHHHHSCSSSC----H-----HH
T ss_pred             HH-HHHHHHHHHc-ccchHHHHHHHHHHHHHHHHhcCcc-cccccchHHHHHHHHHHHHHHHhccCCC----H-----HH
Confidence            53 4444554432 2344456667788888888764410 0001122 23467888888777543222    1     28


Q ss_pred             HHHHHHHhhhhccc-CCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHh
Q 001144          494 QALALSACTTLVTV-EPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQ  572 (1141)
Q Consensus       494 r~~a~~ait~L~~L-~P~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~  572 (1141)
                      |+.|+.++..|+.. .+.+.. .-..++......+  .   ++.   .-.+...++..+...... .+ -...+..++..
T Consensus       586 r~~a~~~lg~L~~~~g~~~~~-~~~~~l~~L~~~l--~---~e~---~r~~~~~al~~i~~~~~~-~~-~~~~~~~i~~~  654 (1230)
T 1u6g_C          586 KERAISCMGQIICNLGDNLGS-DLPNTLQIFLERL--K---NEI---TRLTTVKALTLIAGSPLK-ID-LRPVLGEGVPI  654 (1230)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCT-HHHHHHHHHHHHT--T---SSS---HHHHHHHHHHHHTTCSSC-CC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhhh-hHHHHHHHHHHHh--c---cch---hHHHHHHHHHHHHhCccc-cc-hHHHHHHHHHH
Confidence            99999999999753 333321 2222322211111  1   111   111223333333322111 11 14567788888


Q ss_pred             hhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHH
Q 001144          573 IDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI  652 (1141)
Q Consensus       573 L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg  652 (1141)
                      +...+.++....|.-|+.+...+.+.+-..                   +                 +   ...+-.++.
T Consensus       655 L~~~l~~~~~~~r~~a~~al~~l~~~~~~~-------------------~-----------------~---~~~v~~~l~  695 (1230)
T 1u6g_C          655 LASFLRKNQRALKLGTLSALDILIKNYSDS-------------------L-----------------T---AAMIDAVLD  695 (1230)
T ss_dssp             HHHHTTSCCHHHHHHHHHHHHHHHHHCCTT-------------------C-----------------C---HHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhccccc-------------------C-----------------C---HHHHHHHHH
Confidence            888999999999999999887777632110                   0                 0   114455555


Q ss_pred             HhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCC-CCCChhHHHHHHHHH
Q 001144          653 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA-SIDPSEVFNRIVSSV  731 (1141)
Q Consensus       653 ~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-~~~~~~~~~~i~~~~  731 (1141)
                      .+.|...|.|.++++.+.+++..++.      ........+     .+  .-+..+..+.+... .+....-+..+.+.+
T Consensus       696 ~ll~ll~~~D~~~~~~~~~~L~~l~~------~~~~~~~~~-----~~--~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l  762 (1230)
T 1u6g_C          696 ELPPLISESDMHVSQMAISFLTTLAK------VYPSSLSKI-----SG--SILNELIGLVRSPLLQGGALSAMLDFFQAL  762 (1230)
T ss_dssp             TCGGGSCTTCHHHHHHHHHHHHHHTT------SCGGGGGGT-----TT--TTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHHHH------hCchhHHHh-----HH--hHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence            56677889999999999998887751      110000000     00  01122233223322 111111122334444


Q ss_pred             HhhCC-hHHHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhc-CcHHHHHH
Q 001144          732 CILLT-KDELVATLHSCTTAICDRT-----KQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-TDKHLRLE  804 (1141)
Q Consensus       732 ~k~L~-~~el~~li~tll~~L~d~~-----~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i-~~~~~r~~  804 (1141)
                      ...-+ ...+.+++..+++.+..+.     .+....++..+..++...|....     ++++.+...+..- ..+..+..
T Consensus       763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  837 (1230)
T 1u6g_C          763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-----AVVGQFIQDVKNSRSTDSIRLL  837 (1230)
T ss_dssp             HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-----HHHTTTTTTTTTTTCCHHHHHH
T ss_pred             HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-----HHHHHHHHHhCCCCccHHHHHH
Confidence            33222 2345566666665554321     12235566777777776665551     2344444444321 12233332


Q ss_pred             HHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCC
Q 001144          805 TLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEK  884 (1141)
Q Consensus       805 ~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~  884 (1141)
                      ++.++-.++.+.                           ++         +..    +.+.+.++..+...         
T Consensus       838 ~l~~l~~~g~~~---------------------------~~---------~~~----~~l~~~~~~~l~~~---------  868 (1230)
T 1u6g_C          838 ALLSLGEVGHHI---------------------------DL---------SGQ----LELKSVILEAFSSP---------  868 (1230)
T ss_dssp             HHHHHHHHHHHS---------------------------CC---------CSC----THHHHHHHHGGGCS---------
T ss_pred             HHHHHHHhcccC---------------------------CC---------ccc----ccHHHHHHHHhCCC---------
Confidence            222222222110                           00         000    11233333332210         


Q ss_pred             CCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHH
Q 001144          885 GDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC  964 (1141)
Q Consensus       885 ~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL  964 (1141)
                                  ..-+-.+|..||+.+....       +..+.|.++-++    ..-        ......++.|++..+
T Consensus       869 ------------~~~Vr~aAa~aLg~l~~~~-------~~~~lp~ll~~l----~~~--------~~~~~~~l~al~e~i  917 (1230)
T 1u6g_C          869 ------------SEEVKSAASYALGSISVGN-------LPEYLPFVLQEI----TSQ--------PKRQYLLLHSLKEII  917 (1230)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHT-------HHHHHHHHHHHH----HSC--------GGGHHHHHHHHHHHH
T ss_pred             ------------CHHHHHHHHHHhHHHhccC-------HHHHHHHHHHHH----hcc--------chhhHHHHHHHHHHH
Confidence                        0012345666666654322       223444444433    110        011234566666666


Q ss_pred             HhhCChhHHHHHHh---cCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhh
Q 001144          965 ECVGDLEMRKILAR---DGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR 1038 (1141)
Q Consensus       965 ~~~g~~~~~~~le~---~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~ 1038 (1141)
                      ...+..+...+.+.   .=.|.   ..+..-.-+...-..++...+   ..++-.+...+++.....|.+++..+..++.
T Consensus       918 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~  994 (1230)
T 1u6g_C          918 SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTIS  994 (1230)
T ss_dssp             HSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC
T ss_pred             hcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            55443333222221   00011   111111111111122233333   2344455566777777778888887777776


Q ss_pred             ccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCCh-------------
Q 001144         1039 YSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDE------------- 1101 (1141)
Q Consensus      1039 ~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~------------- 1101 (1141)
                      ... .....++.++..|..+++|+++.||..++.+|+.++.+   -++.+.+.+|+.+++....+++             
T Consensus       995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~ 1074 (1230)
T 1u6g_C          995 DHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHT 1074 (1230)
T ss_dssp             SSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEE
T ss_pred             cCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccc
Confidence            643 21123455667778899999999999999999988765   3466778899999988754443             


Q ss_pred             -----hHHHHHHHHHHHHhccC
Q 001144         1102 -----SVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus      1102 -----~vvleam~~L~~lL~~l 1118 (1141)
                           ++.-.|..++.++++.-
T Consensus      1075 vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C         1075 VDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp             EETHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCcHHHHHHHHHHHHHHHHHH
Confidence                 78889999999998874

PyMOL of 1u6g

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1141
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-04
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.002

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 21/170 (12%), Positives = 68/170 (40%), Gaps = 2/170 (1%)

Query: 972  MRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1031
            +   +A+  + + + + ++++ D+             +I   L   +   +   R+    
Sbjct: 135  LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII 194

Query: 1032 ALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089
            AL   V   G   F  L+E ++  L ++ S  +      C+  + +     I +Y  +++
Sbjct: 195  ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 254

Query: 1090 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQH 1139
             +++   +  D+ ++   +    + ++   K+    +   +++ L+ L +
Sbjct: 255  PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 304

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1141
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.23
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.04
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.72
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.72
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.68
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.67
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.3
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.12
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.67
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.31
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.05
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.8
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.18
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	92.36
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.14
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.12
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.07
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	88.14
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	87.02
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	86.62
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	85.64

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1e-06  Score=112.59  Aligned_cols=950  Identities=13%  Similarity=0.094  Sum_probs=450.6

Q ss_pred             hhhhhhcccccchhHHHHHHHhhhcCCCchhhhc-chHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCcccccc
Q 001144            2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS-KRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELF   80 (1141)
Q Consensus         2 Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~-k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~   80 (1141)
                      -|+.||.+.+...|.-|+.=|.-.++.....+++ ....|+..+-..|.|+|.+||.+-++.+..|+.+.      ++..
T Consensus         7 ~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~   80 (1207)
T d1u6gc_           7 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV------KEYQ   80 (1207)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS------CHHH
T ss_pred             HHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC------cHhh
Confidence            4789999999999999998777777765555543 33467888777889999999999999998888763      1122


Q ss_pred             eeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccch------hhhHhhHHHHHhhcc----cccccc
Q 001144           81 VEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIP------EMQHILWPLLLKMII----PRAYTS  150 (1141)
Q Consensus        81 i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~------~m~~vLWP~LL~~i~----p~~yT~  150 (1141)
                      ++.++...+..   .       .    .....+|+.+..+|+.+-..++      .+...+++.++..+.    ..+-..
T Consensus        81 ~~~l~~~L~~~---l-------~----~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  146 (1207)
T d1u6gc_          81 VETIVDTLCTN---M-------L----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS  146 (1207)
T ss_dssp             HHHHHHHHHHH---T-------T----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred             HHHHHHHHHHH---h-------c----CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHH
Confidence            33333322110   0       0    0123567777777766543332      333444554444433    332222


Q ss_pred             hhhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHH
Q 001144          151 AAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQ  230 (1141)
Q Consensus       151 al~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~  230 (1141)
                      .-...+.++..++.+...            .-.|.-..++..++-.+.+|...  --..++..|..+...+...   ...
T Consensus       147 v~~~al~~l~~l~~~~g~------------~l~~~~~~il~~l~~~l~~~~~~--vR~~A~~~l~~l~~~~~~~---~~~  209 (1207)
T d1u6gc_         147 VQLEALDIMADMLSRQGG------------LLVNFHPSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNI---VFV  209 (1207)
T ss_dssp             HHHHHHHHHHHHHHHTCS------------SCTTTHHHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CT
T ss_pred             HHHHHHHHHHHHHHHhhH------------hhHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHCCHH---HHH
Confidence            222334445555444221            11233457888888888887643  2233455556666655443   223


Q ss_pred             HhhhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHh
Q 001144          231 DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQ  310 (1141)
Q Consensus       231 ~~IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L~  310 (1141)
                      .-++.+++.+..+..    ...+..+-..+-.+.+..=..+..  -...+..-+.+-+  ..+.+.-+..-+++++....
T Consensus       210 ~~~~~ll~~l~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l--~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         210 DLIEHLLSELSKNDS----MSTTRTYIQCIAAISRQAGHRIGE--YLEKIIPLVVKFC--NVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             THHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHH--SSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCC----HHHHHHHHHHHHHHHHHcchhhHH--HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHH
Confidence            346666666644321    111223332222222221111111  0111122222222  12334445555567777666


Q ss_pred             hcCChhHHHHHHHHHHH----hcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccc
Q 001144          311 KVADRNYVCDKIDWMYK----QANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEE  386 (1141)
Q Consensus       311 ~~~~~~~V~~~L~~ll~----~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e  386 (1141)
                      .|.+.  +..++..++.    ...|.............+.....+-+..-.            .   .-..+.+.  +..
T Consensus       282 ~~~~~--~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~--~d~  342 (1207)
T d1u6gc_         282 RCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ------------G---SDDEYSDD--DDM  342 (1207)
T ss_dssp             CTTCC--CHHHHHHHHHHHTTCCCCC-----------------------------------------------------C
T ss_pred             hChhh--hhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhh------------h---HHHHHhhh--hhh
Confidence            66543  2333333332    222211100001111111111110000000            0   00011111  112


Q ss_pred             hHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCC-----
Q 001144          387 SDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPL-----  461 (1141)
Q Consensus       387 ~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f-----  461 (1141)
                      ..++|.....+.+.++...|. .+...++ .+.+.+.+.+ ...++.++.+.++++..+.+..........+...     
T Consensus       343 s~~vR~~a~~~L~~l~~~~~~-~l~~~~~-~~~~~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  419 (1207)
T d1u6gc_         343 SWKVRRAAAKCLDAVVSTRHE-MLPEFYK-TVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGE  419 (1207)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCT-THHHHHT-TTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CC
T ss_pred             hHHHHHHHHHHHHhHHHHHHH-HHHHHHH-HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhc
Confidence            346788888888999888774 3334333 2444444444 3467889999999999888765432111000000     


Q ss_pred             C-------CHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCCCCC
Q 001144          462 K-------KRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPI  534 (1141)
Q Consensus       462 ~-------~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~lP~~~~  534 (1141)
                      .       .-+.++..+...++..      ++     ++|+.++.++..|.+.-|..-.+....++...+..+.    +.
T Consensus       420 ~~~~~l~~~~~~i~~~l~~~l~~~------~~-----~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~----~~  484 (1207)
T d1u6gc_         420 TPLTMLQSQVPNIVKALHKQMKEK------SV-----KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN----DK  484 (1207)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHTTCS------CH-----HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT----CS
T ss_pred             chHHHHHHHhHHHHHHHHHHhcCC------ch-----hHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHh----cc
Confidence            0       0113444444444322      12     3889999999999887665544445555555442221    11


Q ss_pred             CchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhh----hhcCChhHHHhhHHHHHHHHHHHHHHhcccccccc
Q 001144          535 DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQ----YVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCAL  610 (1141)
Q Consensus       535 ~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~p----Wl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~  610 (1141)
                      .....+.......+..++....      ++.++..+..+.+    =+.+.....|..|..+...+.+.+...        
T Consensus       485 ~~~~~~~~~al~~l~~l~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~--------  550 (1207)
T d1u6gc_         485 SSSSNLKIDALSCLYVILCNHS------PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL--------  550 (1207)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSC------GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS--------
T ss_pred             cchhHHHHHHHHHHHHHHHhcc------HHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhh--------
Confidence            1112233334445555555432      3334433333333    334455555666666655555532211        


Q ss_pred             CCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCc--cCCChhHHHHHHHHHHHHHHHHhhCCCCCC
Q 001144          611 GCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVG  688 (1141)
Q Consensus       611 ~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C--~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~  688 (1141)
                                  .......             -.+.+..++..+..++  .|.+.++|..|+.|+..++.-..       
T Consensus       551 ------------~~~~~~~-------------~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~-------  598 (1207)
T d1u6gc_         551 ------------DQPSSFD-------------ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG-------  598 (1207)
T ss_dssp             ------------SSCCCCC-------------CHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG-------
T ss_pred             ------------ccchhhh-------------hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-------
Confidence                        0000000             0124555555555444  47788999999999988763211       


Q ss_pred             CCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHH-HHHHHHHHhh-C---ChHHHHHHHHHHHHhccCCCchhHHHHH
Q 001144          689 SSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVF-NRIVSSVCIL-L---TKDELVATLHSCTTAICDRTKQSAEGAI  763 (1141)
Q Consensus       689 ~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~-~~i~~~~~k~-L---~~~el~~li~tll~~L~d~~~~~~~~A~  763 (1141)
                      ....   ......   +..+.+    ....+..... .+....+... .   -..-+.+.+..+...+.+.+..--.+|.
T Consensus       599 ~~~~---~~~~~~---l~~l~~----~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al  668 (1207)
T d1u6gc_         599 DNLG---SDLPNT---LQIFLE----RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTL  668 (1207)
T ss_dssp             GGCC---THHHHH---HHHHHH----HTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred             hhhH---HHHHHH---HHHHHH----HhcchhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            1000   111111   111111    1122211110 1111122111 1   1233556666777778877776667888


Q ss_pred             HHHHHHHHhhccccchhhHhHHHHHHHHHhhh---cCcHHHHHHHHHHHHHhhhcccchhhH--HHHhhhhccccccccc
Q 001144          764 QAVVEFVTKRGNELSETDVSRTTQSLLSAAVH---ITDKHLRLETLGAISCLAENTNSKIVF--NEVLATAGKDIVTKDI  838 (1141)
Q Consensus       764 ~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~---i~~~~~r~~~l~ai~lLa~~h~~~Vv~--~~LL~~~~~~~~~~d~  838 (1141)
                      ..|..+++..+..+..    ..++.+...+..   -.+.+++..++..+..+++.++..+-.  ..++..+.+..     
T Consensus       669 ~~L~~l~~~~~~~~~~----~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~-----  739 (1207)
T d1u6gc_         669 SALDILIKNYSDSLTA----AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLV-----  739 (1207)
T ss_dssp             HHHHHHHHHCCTTCCH----HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHH-----
T ss_pred             HHHHHHHHhccccchh----HHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHh-----
Confidence            8999999998888833    344444444432   345678899999999999888754311  02221111100     


Q ss_pred             ccccCCCChhh-------HHHHhhc---CcchHHHHHHHHHHHHccCCCccCCCCC------------------------
Q 001144          839 SRLRGGWPMQD-------AFHAFSQ---HAVLSFLFLEHLISALNQTPFVKGDMEK------------------------  884 (1141)
Q Consensus       839 ~~~~~plP~d~-------~W~aLa~---~~~l~~~vL~~LL~~L~~~p~~~e~~~~------------------------  884 (1141)
                         ..|+-.+.       .++.+..   +......++..|...+..    ......                        
T Consensus       740 ---~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  812 (1207)
T d1u6gc_         740 ---RSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS----QSTALTHKQSYYSIAKCVAALTRACPKEGP  812 (1207)
T ss_dssp             ---TCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT----C----CCHHHHHHHHHHHHHHHHHSCCCSH
T ss_pred             ---cCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc----ccchhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence               11111111       2222221   111222222222111110    000000                        


Q ss_pred             ---CCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHH
Q 001144          885 ---GDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTS  959 (1141)
Q Consensus       885 ---~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleA  959 (1141)
                         ..+...........-....|..+|+|+-...+.+       ..++++-.++-.+.         ..++  ...|..|
T Consensus       813 ~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~-------~~~~l~~~l~~~l~---------~~~~~vr~aAa~a  876 (1207)
T d1u6gc_         813 AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS-------GQLELKSVILEAFS---------SPSEEVKSAASYA  876 (1207)
T ss_dssp             HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC-------SCTHHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHhC---------CCCHHHHHHHHHH
Confidence               0000000000000001122233333322221100       11122211111110         0111  3446666


Q ss_pred             HHHHHHhhCChhHHHHHHhc-CCCCchhhhHhhHHHHHHHHhhcC----ChhHHHHHHHHHhhhcCCcccchhHHHHHHH
Q 001144          960 FQAFCECVGDLEMRKILARD-GEQNDKEKWINLIGDVAGCVSIKR----PKEVQTICLILTKSINRQQRFQREAAAAALS 1034 (1141)
Q Consensus       960 lk~lL~~~g~~~~~~~le~~-g~W~~~~~~~~GV~lLAram~~~~----~~~~~~i~~~L~~~L~s~~~~qRi~a~af~s 1034 (1141)
                      +-.+........+-..++.- ...........++..+   +....    .+....++..+...+.+..+.-|-+++..+.
T Consensus       877 Lg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei---~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg  953 (1207)
T d1u6gc_         877 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEI---ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG  953 (1207)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHH---HHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHH---HHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            65543332221111111211 1111111112222221   22222    2456677777777788888888888887777


Q ss_pred             HhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 001144         1035 EFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCL 1111 (1141)
Q Consensus      1035 ELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L 1111 (1141)
                      .|.....      +.++..|.+.++|+++.+|..++..++.+...   ....|...+++.++..+.|+|..|...|+.+|
T Consensus       954 ~L~~~~~------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l 1027 (1207)
T d1u6gc_         954 KLTLIDP------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1027 (1207)
T ss_dssp             HHHHSSG------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHH
T ss_pred             HHHhcCH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7754322      23567888999999999999999999877554   55677888889999999999999999999999


Q ss_pred             HHHhccCCCCCccchHHHHH
Q 001144         1112 LTILKSSSKDAVEPILLNLS 1131 (1141)
Q Consensus      1112 ~~lL~~l~~~~~~~~l~~ia 1131 (1141)
                      ..+++... .-+.+.+-.+.
T Consensus      1028 ~~~~~~~p-~li~~~l~~ll 1046 (1207)
T d1u6gc_        1028 NSAAHNKP-SLIRDLLDTVL 1046 (1207)
T ss_dssp             HHHHHHCG-GGTGGGHHHHH
T ss_pred             HHHHHhCh-HHHHHHHHHHH
Confidence            99998654 44556655544

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure