Citrus Sinensis ID: 001146
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1140 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.974 | 0.774 | 0.718 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.986 | 0.772 | 0.705 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.971 | 0.777 | 0.697 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.772 | 0.705 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.987 | 0.769 | 0.707 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.988 | 0.767 | 0.695 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.989 | 0.777 | 0.687 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.971 | 0.771 | 0.709 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.988 | 0.780 | 0.683 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.778 | 0.686 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1715 bits (4442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1140 (71%), Positives = 944/1140 (82%), Gaps = 29/1140 (2%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++ I
Sbjct: 324 MVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILK 383
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVADFLQ
Sbjct: 384 GTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQ 443
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AALT
Sbjct: 444 EVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTN 503
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YG+GK+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT DG
Sbjct: 504 EKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDG 563
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
GI+AGA FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV+ +
Sbjct: 564 GIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLV 623
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +WV L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFGSFA
Sbjct: 624 EVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFA 683
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL+ +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ETLG
Sbjct: 684 LLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGS 743
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
V+KSRGFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+ E
Sbjct: 744 TVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN- 802
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
G S+ T + D I Q++ KKGMVLPFEPH
Sbjct: 803 ------------GEVSSQITSTDGGDSISESQNN---------------KKGMVLPFEPH 835
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
S+TFD+VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 836 SITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 895
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL +V
Sbjct: 896 AGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDV 955
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
D +TRKMF+DEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 956 DEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1015
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG
Sbjct: 1016 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1075
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
RHSCHLI YFE+ PGV KIK+GYNPATWMLEV+A++QE+ LGIDFTE YK SDLYRRNKA
Sbjct: 1076 RHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKA 1135
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
LI +L P PGSKDL+F TQ+SQS W Q VACLWKQHWSYWRNP YTAVRF FT FIAL+
Sbjct: 1136 LISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALI 1195
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FWDLG + ++QDL NAMGSM+ AVLFLGVQ SSVQP+V++ERTVFYRE+AAGMY
Sbjct: 1196 FGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMY 1255
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ IP+A QV IEIPYI VQSV YG IVYAMIGFEW KFFWY+F M+FTLL+FTFYGM
Sbjct: 1256 SAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGM 1315
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
M VA+TPN ++A+IV+ FYG+WN+FSGFIIPRPR+P+WWRWYYWANP+AWTLYGLVASQ
Sbjct: 1316 MGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQ 1375
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
FGD+ K D ETV+QFL+ YF FKHDFLGVVAAVL + +F F FA IK FNFQRR
Sbjct: 1376 FGDIQTKLSDN-ETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1696 bits (4393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1146 (70%), Positives = 940/1146 (82%), Gaps = 21/1146 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ +HI
Sbjct: 327 MVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILG 386
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGVADFLQ
Sbjct: 387 GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQ 446
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH AAL T
Sbjct: 447 EVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALAT 506
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D+VT G
Sbjct: 507 TRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSG 566
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
GI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKIP++F+
Sbjct: 567 GIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFI 626
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN F SF
Sbjct: 627 EVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFM 686
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS--ETL 418
LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ ETL
Sbjct: 687 LLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETL 746
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE E E
Sbjct: 747 GVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE-ELKE 805
Query: 479 Q----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 534
+ + I G+V LS+ GS+ +G+ +D S + + ++GMV
Sbjct: 806 KRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVTQRGMV 852
Query: 535 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 594
LPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 654
TLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714
RL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 775 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 834
Y GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+L
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 835 YRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFT 894
Y+RNKALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 895 AFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 954
IALLFG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 955 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLF 1014
+AAGMY+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1015 FTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY 1074
FTFYGMMAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1075 GLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKM 1134
GLV SQFGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I
Sbjct: 1393 GLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMK 1451
Query: 1135 FNFQRR 1140
FNFQ+R
Sbjct: 1452 FNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1695 bits (4390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1140 (69%), Positives = 947/1140 (83%), Gaps = 33/1140 (2%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LR +HI +
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF +MGF+CP RKGVADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DEL PFDK+KSH AALTT
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A + MTLF RT+M K T DG
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P W Y++P W+LKIP+SF+
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +A GRNM+VANTFG+FA
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
+LV +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF GHSW + ++SSETLGV
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGV 736
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
LKSRGF H YWYW+G GAL GFV+L NF +TLALTFL+ KP+AVI EE S+E
Sbjct: 737 TFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET- 795
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
+ S++S + EA A+ KK+GMVLPFEPH
Sbjct: 796 ------------------------------ELQSARSEGVVEAGAN--KKRGMVLPFEPH 823
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
S+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 824 SITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVL 883
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT+YESL++SAWLRL EV
Sbjct: 884 AGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEV 943
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
D RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 944 DKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 1003
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLG
Sbjct: 1004 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLG 1063
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+DF + YK S+LY+RNK
Sbjct: 1064 HESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKE 1123
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
LI++LS+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRNPPYTAVRF FT IAL+
Sbjct: 1124 LIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALM 1183
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FWDLGG+TK QDL NAMGSM+TAVLFLG+Q +SVQP+V+VERTVFYRE+AAGMY
Sbjct: 1184 FGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMY 1243
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ +P+A AQV IEIPY+LVQ++VYG IVYAMIGFEWTA KFFWY+FFMY + L FTFYGM
Sbjct: 1244 SAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGM 1303
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
MAVA+TPNHHIA++VS+ FYG+WN+FSGF+IPRP +P+WW WYYW P+AWTLYGL+ASQ
Sbjct: 1304 MAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQ 1363
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
FGD+ + D+ +VKQF+++++ ++ FLGVVAA+ V+F +LF +FA+GIK FNFQ+R
Sbjct: 1364 FGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1694 bits (4386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 808/1146 (70%), Positives = 939/1146 (81%), Gaps = 21/1146 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ +HI
Sbjct: 327 MVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILG 386
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGVADFLQ
Sbjct: 387 GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQ 446
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH AAL T
Sbjct: 447 EVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALAT 506
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D+VT G
Sbjct: 507 TRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSG 566
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
GI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKIP++F+
Sbjct: 567 GIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFI 626
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN F SF
Sbjct: 627 EVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFM 686
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS--ETL 418
LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ ETL
Sbjct: 687 LLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETL 746
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE E E
Sbjct: 747 GVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE-ELKE 805
Query: 479 Q----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 534
+ + I G+V LS+ GS+ +G+ +D S + + ++GMV
Sbjct: 806 KRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVTQRGMV 852
Query: 535 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 594
LPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 654
TLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714
RL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 775 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 834
Y GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+L
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 835 YRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFT 894
Y+RNKALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 895 AFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 954
IALLFG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 955 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLF 1014
+AAGMY+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1015 FTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY 1074
FTFYGMMAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1075 GLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKM 1134
GLV SQFGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I
Sbjct: 1393 GLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMK 1451
Query: 1135 FNFQRR 1140
FNFQ+R
Sbjct: 1452 FNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1656 bits (4289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1143 (70%), Positives = 942/1143 (82%), Gaps = 17/1143 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV LRQ IHI
Sbjct: 336 MVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQAIHILG 395
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQ
Sbjct: 396 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKGVADFLQ 455
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFDKSK+H AALTT
Sbjct: 456 EVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNHPAALTT 515
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YGV ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F RTKMH+D+VTDG
Sbjct: 516 SRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHRDSVTDG 575
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
IF GA FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IPSWILKIP+SF+
Sbjct: 576 VIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFI 635
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +VF+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RNM+VAN FGSF
Sbjct: 636 EVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFM 695
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS--SETL 418
LL+ + LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K +S +ETL
Sbjct: 696 LLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETL 755
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQ L+SRG F WYW+G GAL GF++L N +TLALT+L P+ K + ++EE E E
Sbjct: 756 GVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEE-ELKE 814
Query: 479 QDDRIGGNV-QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 537
+ I GNV + T+ S+N + ++SS+ A+ S+P ++GMVLPF
Sbjct: 815 KQANINGNVLDVDTMASSTNLAI-------VDNTETSSEI-----ADNSQPTQRGMVLPF 862
Query: 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 597
P SLTFD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLM
Sbjct: 863 APLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLM 922
Query: 598 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 657
DVLAGRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL
Sbjct: 923 DVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLP 982
Query: 658 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717
+VDS TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 983 KDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1042
Query: 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVG
Sbjct: 1043 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1102
Query: 778 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRR 837
PLG S LI YFE I GV +IKDGYNPATWMLEVS SQE ALG+DF + Y++S+L++R
Sbjct: 1103 PLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQR 1162
Query: 838 NKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFI 897
NKALI++LS PPPGS +LYFPT++S S Q +ACLWK H SYWRNPPY A+R FFT I
Sbjct: 1163 NKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVI 1222
Query: 898 ALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAA 957
ALLFG++FWDLGG+T ++QDLFNAMGSM++AVLF+GV SVQP+VSVERTVFYRE+AA
Sbjct: 1223 ALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAA 1282
Query: 958 GMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTF 1017
GMY+ P+A QV IE PY LVQS++YG IVY+MIGF+WTAAKFFWY+FFM+FT L+FTF
Sbjct: 1283 GMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTF 1342
Query: 1018 YGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLV 1077
YGMMAV LTP++H+A+IVS+ FYG+WN+FSGFIIPRP++PIWWRWY W P+AWTLYGLV
Sbjct: 1343 YGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLV 1402
Query: 1078 ASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137
ASQFGD+ MD G VK F+++YFDFKH +LGVVA V+V F +LF FLF I NF
Sbjct: 1403 ASQFGDI-MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNF 1461
Query: 1138 QRR 1140
Q+R
Sbjct: 1462 QKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1641 bits (4250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/1142 (69%), Positives = 925/1142 (80%), Gaps = 15/1142 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD+M+RGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI
Sbjct: 340 MVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILG 399
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQ
Sbjct: 400 GTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQ 459
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ+QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT
Sbjct: 460 EVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTT 519
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YGV ELLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG
Sbjct: 520 SRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADG 579
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
IF GA FFA+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+
Sbjct: 580 VIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFI 639
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV + F+SYYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF
Sbjct: 640 EVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFM 699
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS--SETL 418
LL+ + LGGFIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K +S +ETL
Sbjct: 700 LLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETL 759
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQ L SRG F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E
Sbjct: 760 GVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKE 818
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ I GNV SSN+ GST G S A+ S+P ++GMVLPF
Sbjct: 819 KQANINGNVLDVDTMASSNNLAIVGST----GTGSEI-------ADNSQPTQRGMVLPFT 867
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
P SLTF+++ YSVDMP+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMD
Sbjct: 868 PLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMD 927
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI GNI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL
Sbjct: 928 VLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPK 987
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
+VDS TRKMFI+EVMELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMD
Sbjct: 988 DVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMD 1047
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGP
Sbjct: 1048 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1107
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
LG HS LI YFE I GV KI DGYNPATWMLEV+ SQE AL +DF + Y++S+L++RN
Sbjct: 1108 LGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRN 1167
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KALI++LS PPPGS +LYFPTQ+SQS IQ +ACLWKQH SYWRNPPY A+R FFT IA
Sbjct: 1168 KALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIA 1227
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV SVQP+VSVERTVFYRE+AAG
Sbjct: 1228 LIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAG 1287
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A QV IE PY LVQSV+Y IVY+MIGF+WT AKFFWY+FFM+FTLL+FTFY
Sbjct: 1288 MYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFY 1347
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMMAV LTP++H+A+IVS+ FY +WN+F+GF+I RP P+WWRWY W P+AWTLYGL+
Sbjct: 1348 GMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIV 1407
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQ+GD+ MD G V F+++YFDFKH +LG VA V+V F +LF FLF I NFQ
Sbjct: 1408 SQYGDI-VTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQ 1466
Query: 1139 RR 1140
+R
Sbjct: 1467 KR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1627 bits (4212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1142 (68%), Positives = 927/1142 (81%), Gaps = 14/1142 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ IHI
Sbjct: 321 VVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILG 380
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFRCP RKGVADFLQ
Sbjct: 381 GTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQ 440
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PFD+++SH AAL T
Sbjct: 441 EVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALAT 500
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YGV ++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F RT M D G
Sbjct: 501 SKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR-DYG 559
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
I+ GA +FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY IPSWIL+IP++FL
Sbjct: 560 MIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFL 619
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV V+VF++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR+MVV++TFG +
Sbjct: 620 EVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLS 679
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW + + TLGV
Sbjct: 680 LLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGV 739
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
VLKSRG F WYW+GLGAL G+ LL N YT+AL+ L PF A ++E+ +
Sbjct: 740 SVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHA 799
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTD--DIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ G V+ G + +R + I Q S S A++ ASR KGMVLPF
Sbjct: 800 NLTGEVVE-----GQKDTKSRKQELELSHIADQNSGINS---ADSSASR---KGMVLPFA 848
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
P S++F++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 849 PLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMD 908
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESL+FSAWLRL
Sbjct: 909 VLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPS 968
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
EVDSE RKMFI+EVM+LVEL LR +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 969 EVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1028
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGP
Sbjct: 1029 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1088
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
+G++S LI YFE I GV +IKDGYNPATWMLEV++++QE LG+DF+E Y++S+LY+RN
Sbjct: 1089 VGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRN 1148
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
K LIE+LS PPPGS DL FPTQ+S+S Q +ACLWKQ+WSYWRNP YTAVR FT IA
Sbjct: 1149 KELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIA 1208
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FW+LG RTK+ QDLFNAMGSM+ AVL++GVQ SVQP+V VERTVFYRE+AAG
Sbjct: 1209 LMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAG 1268
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ P+A QV IE+PYI+VQ+++YG +VY+MIGFEWT AKF WY+FFMYFTLL+FTFY
Sbjct: 1269 MYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFY 1328
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMMAV LTPN IAAI+S+ FY +WN+FSG++IPRP+IP+WWRWY W P+AWTLYGLVA
Sbjct: 1329 GMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVA 1388
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQFGD+ TV QF+ DYF F H+FL VVA V VVFAV F FLF+ I FNFQ
Sbjct: 1389 SQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQ 1448
Query: 1139 RR 1140
RR
Sbjct: 1449 RR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1619 bits (4192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/1141 (70%), Positives = 950/1141 (83%), Gaps = 33/1141 (2%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q++ I
Sbjct: 328 MVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMK 387
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG ADFLQ
Sbjct: 388 GTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQ 447
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH AALTT
Sbjct: 448 EVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTT 507
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YG+GKR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +D+ DG
Sbjct: 508 QKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDG 567
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
GI++GA FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIPV+F
Sbjct: 568 GIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFA 627
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +WVFL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+TFG+FA
Sbjct: 628 EVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFA 687
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL+ +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG
Sbjct: 688 LLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGA 747
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
V+++RGFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E E+NE
Sbjct: 748 AVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNES- 806
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEP 539
+SS Q S E + AS KKKGMVLPF+P
Sbjct: 807 -------------------------------ESSPQITSTQEGDSASENKKKGMVLPFDP 835
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 599
HS+TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 836 HSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDV 895
Query: 600 LAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 659
LAGRKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +
Sbjct: 896 LAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQD 955
Query: 660 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719
V+ E R MF++EVM+LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 956 VNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1015
Query: 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779
PTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL
Sbjct: 1016 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1075
Query: 780 GRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNK 839
GR SCHLI YFE+IPGV KI +GYNPATWMLEV+A+SQE+ALG+DFT+ YK+SDLYRRNK
Sbjct: 1076 GRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNK 1135
Query: 840 ALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIAL 899
ALI++LS P PG+ DL+F ++FSQ W Q +ACLWKQHWSYWRNP YTAVR FT FIAL
Sbjct: 1136 ALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIAL 1195
Query: 900 LFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGM 959
+FG++FWD+G + RNQDL NAMGSM+ AVLFLGVQ SSVQP+VSVERTVFYREKAAGM
Sbjct: 1196 IFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGM 1255
Query: 960 YAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYG 1019
Y+ IP+A AQV+IEIPYI VQ+ VYG IVY+MIGFEWT AKFFW FFM+FT L+FTF+G
Sbjct: 1256 YSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFG 1315
Query: 1020 MMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVAS 1079
MM VA+TPN ++A+IV+ FY +WN+FSGFI+PRPRIPIWWRWYYW PIAWTLYGLVAS
Sbjct: 1316 MMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVAS 1375
Query: 1080 QFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQR 1139
QFGD+ D D +TV+QFL+ F FKHDFLGVVAAV+V FAV+F F FALGIK FNFQR
Sbjct: 1376 QFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQR 1435
Query: 1140 R 1140
R
Sbjct: 1436 R 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1612 bits (4174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1142 (68%), Positives = 938/1142 (82%), Gaps = 15/1142 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD MIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++HI
Sbjct: 316 MVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILG 375
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVADFLQ
Sbjct: 376 GTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQ 435
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H AALTT
Sbjct: 436 EVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTT 495
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YG+ K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +V DG
Sbjct: 496 SRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDG 555
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
IF GA F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP+SFL
Sbjct: 556 AIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFL 615
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
E AVW+ ++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TFGSFA
Sbjct: 616 ECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFA 675
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETL 418
L+LL LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S++TL
Sbjct: 676 QLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTL 735
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQVLK RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE +
Sbjct: 736 GVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREK 795
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+R G NV+L TLG S ++ S + E + +K+GMVLPF
Sbjct: 796 HVNRTGENVELLTLGTDSQNS-------------PSDANAGRGEITGADTRKRGMVLPFT 842
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
P S+TFD + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMD
Sbjct: 843 PLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMD 902
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 903 VLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPS 962
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
EVDSE RKMF++EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 963 EVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1022
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGP
Sbjct: 1023 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1082
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
LG +SCHLI+YFE I GV+KIKDGYNPATWMLEV+ +QE LGI+F E Y+ SDLY+RN
Sbjct: 1083 LGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRN 1142
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
K LI +LS PPPGS DL+FPTQFSQ + Q +ACLWKQH SYWRNP YTA R FFT IA
Sbjct: 1143 KTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIA 1202
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++F +LG + + DLFN++GSM+ AVLF+G+Q +VQPIV VERTVFYREKAAG
Sbjct: 1203 LIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAG 1262
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A AQV+IEIP+I +Q+VVYG IVY++IGF+WT KFFWY+FFM+FT ++FTFY
Sbjct: 1263 MYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFY 1322
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMMAVA+TPN IAAIVST FY +WN+F+GF+IPRPRIPIWWRWY WA P+AWTLYGLVA
Sbjct: 1323 GMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVA 1382
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQ+GD+ + ++ GE V+ +++ YF F+HD+LG VA +V FA LF F+FA IK+FNFQ
Sbjct: 1383 SQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQ 1442
Query: 1139 RR 1140
RR
Sbjct: 1443 RR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1587 bits (4110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1140 (68%), Positives = 931/1140 (81%), Gaps = 18/1140 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGD MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++HI
Sbjct: 320 MVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILG 379
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVADFLQ
Sbjct: 380 GTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQ 439
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AALTT
Sbjct: 440 EVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTT 499
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YG+ K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ + D
Sbjct: 500 SKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDA 559
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
IF GA F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+SF+
Sbjct: 560 TIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFV 619
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
E VW+ ++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG+FA
Sbjct: 620 ECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFA 679
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LVLL LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +TLG
Sbjct: 680 QLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGE 739
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
+ L++RG F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE ++
Sbjct: 740 RFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEA 799
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
+R G NV+L+T G ++ T G + +IR + +KKGMVLPF P
Sbjct: 800 NRTGANVELATRGSAA---TSDGGSVEIRKDGN---------------RKKGMVLPFTPL 841
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
S+TFD V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVL
Sbjct: 842 SITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVL 901
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL EV
Sbjct: 902 AGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEV 961
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
D + RKMF+DEVM+LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 962 DEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1021
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG
Sbjct: 1022 TSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLG 1081
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
R S HLI YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F E Y+ SDLY+RNK
Sbjct: 1082 RQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKD 1141
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
LI++LS PPPGSKDL+F TQFSQS +Q +ACLWKQH SYWRNP YTA R FFT IAL+
Sbjct: 1142 LIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALI 1201
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FWDLG + + DL NAMGSM+ AVLF+G+Q +VQPIV VERTVFYREKAAGMY
Sbjct: 1202 FGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMY 1261
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ +P+A AQV+IE+P+ILVQ+++YG +VY+MIGF+WTAAKF WY+FFM+FT L+FT+YGM
Sbjct: 1262 SALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGM 1321
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
MAVA+TPN IAAIV+ FY +WN+F+GFIIPRPRIPIWWRWYYWA P+AWTLYGLV SQ
Sbjct: 1322 MAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQ 1381
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
FG+ D D ETVK FL+ + F+HDFL VV ++VVF VLF +FA IK NFQRR
Sbjct: 1382 FGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1140 | ||||||
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.996 | 0.361 | 0.756 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.985 | 0.778 | 0.719 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.996 | 0.772 | 0.751 | 0.0 | |
| 449460732 | 1451 | PREDICTED: pleiotropic drug resistance p | 0.996 | 0.782 | 0.718 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.976 | 0.778 | 0.734 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.996 | 0.782 | 0.718 | 0.0 | |
| 449483991 | 1451 | PREDICTED: LOW QUALITY PROTEIN: pleiotro | 0.996 | 0.782 | 0.717 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.777 | 0.725 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.996 | 0.783 | 0.707 | 0.0 | |
| 255572793 | 1434 | ATP-binding cassette transporter, putati | 0.982 | 0.781 | 0.723 | 0.0 |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1764 bits (4570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/1144 (75%), Positives = 986/1144 (86%), Gaps = 8/1144 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LRQ IHI +
Sbjct: 2003 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 2062
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FF SMGFRCP+RKGVADFLQ
Sbjct: 2063 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 2122
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ+QYWA K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL T
Sbjct: 2123 EVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKT 2182
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YGV K+ELL A ISRE LLMKRNSFVYIFKL Q+ +A + MT+FLRT+MHK++ DG
Sbjct: 2183 EKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDG 2242
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
I+ GA FF + M+ FNG SE++MTIAKLPVFYKQR F+P WAYA+PSWILKIP++F+
Sbjct: 2243 SIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFV 2302
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EVAVWVF+SYYV+G+D N GR FKQY LL+ VNQMASALFRFIA GRNM+VANTFGSF+
Sbjct: 2303 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 2362
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLG 419
LL+L +LGGF+LSRE++KKWW W YW SPL YAQNAIV NEFLG SW K + DS+E+LG
Sbjct: 2363 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLG 2422
Query: 420 VQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ 479
V VLKSRGFF YWYW+G GAL GF+L+ NF YT+ALT+L+ FEKP+AVITEE E
Sbjct: 2423 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE---- 2478
Query: 480 DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL---AEAEASRPKKKGMVLP 536
+ + GG ++LS+ S T S D G+ SS S S+ A AEA R KKGMVLP
Sbjct: 2479 NSKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLP 2538
Query: 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 596
F+P S+TFD++ YSVDMPEEMK QGVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTL
Sbjct: 2539 FQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 2598
Query: 597 MDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 656
MDVLAGRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VTI+ESLL+SAWLRL
Sbjct: 2599 MDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRL 2658
Query: 657 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716
+VDS+TRKMFI+EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 2659 PADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 2718
Query: 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYV
Sbjct: 2719 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYV 2778
Query: 777 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYR 836
GPLGRHS HLI YF+ I GV KIKDGYNPATWMLEV++++QE LG+DFTE YK SDLYR
Sbjct: 2779 GPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYR 2838
Query: 837 RNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAF 896
RNK LI++LS+P PGSKDLYFPTQ+SQS + Q +ACLWKQ SYWRNPPYTAVRFFFT F
Sbjct: 2839 RNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTF 2898
Query: 897 IALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKA 956
IAL+FG++FWDLG + K+ QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+A
Sbjct: 2899 IALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERA 2958
Query: 957 AGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFT 1016
AGMY+ +P+A AQ ++EIPY+ Q+VVYG IVYAMIGFEWTAAKFFWY+FFM+FTLL+FT
Sbjct: 2959 AGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFT 3018
Query: 1017 FYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGL 1076
FYGMMAVA TPN HIAAIV+ FYGLWN+FSGFI+PR RIP+WWRWYYWA P+AWTLYGL
Sbjct: 3019 FYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGL 3078
Query: 1077 VASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFN 1136
V SQFGD+ D+ DTG+TV+Q+L DYF F+HDFLGVVAAV+V F VLF F+FA IK FN
Sbjct: 3079 VTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFN 3138
Query: 1137 FQRR 1140
FQRR
Sbjct: 3139 FQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1763 bits (4567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1142 (71%), Positives = 969/1142 (84%), Gaps = 18/1142 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN L+Q IHI
Sbjct: 318 LVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILD 377
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQ
Sbjct: 378 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQ 437
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+ DQ+QYW K++PY FVTVQEF+EAFQS+ VGQ I EL TPFDKSKSH AAL
Sbjct: 438 EVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAA 497
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
YGV K ELLKA +RE LLMKRNSFVYIFKL Q+ +A++ MTLFLRT+MH++ +TD
Sbjct: 498 RKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDA 557
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
G++ GA FF++ + FNG SE+SMTIAKLPVFYKQRD +F+PPWAYA+P+WILKIP++F
Sbjct: 558 GVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFF 617
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV VWVF++YYV+G+D N R FKQY LLL VNQMAS LFRFIA GRNM+VANTFGSFA
Sbjct: 618 EVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFA 677
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET--L 418
LL + +LGG +LSR+DIKKWW W YW SP+ Y QNA+VANEFLG SW +S+ T L
Sbjct: 678 LLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSL 737
Query: 419 GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE 478
GVQ +KSRGFF H YWYW+G+GAL GF +L N +TLALT L+P+EKP AVI++E E
Sbjct: 738 GVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDE---PE 794
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ DR GG +QLS G S+H T + + IR EA++ KKKGMVLPFE
Sbjct: 795 RSDRTGGAIQLSQNG--SSHRTITENGVGIR-----------MTDEANQNKKKGMVLPFE 841
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
PHS+TF++V+YSVDMP+EMK QG+ +DKLVLL GVSGAF+PGVLTALMGVSGAGKTTLMD
Sbjct: 842 PHSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMD 901
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP VT+YESL++SAWLRL+P
Sbjct: 902 VLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAP 961
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
EVD ETRKMF++EVMELVELNPLRQ+LVGLPGV+GLSTEQRKRLTI+VELVANPSIIFMD
Sbjct: 962 EVDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMD 1021
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID+FEAFDELFLMKRGG+EIYVGP
Sbjct: 1022 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGP 1081
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
LGRHSCH+I YFE I G K+KDGYNPATWMLEV++++QEL+LG+DF YK S+LYRRN
Sbjct: 1082 LGRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRN 1141
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KA+I++LS PGSKDLYFPTQ+SQS Q +ACLWKQ SYWRNPPYTAVRF FT FIA
Sbjct: 1142 KAIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIA 1201
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLG +T+ QD+FN+ GSM+ AV+FLG Q +SVQP+V++ERTVFYRE+AAG
Sbjct: 1202 LMFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAG 1261
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A AQV++EIPYI Q+VVYG + Y+MIGFEWTAAKFFWYIFFMYFTL++FT+Y
Sbjct: 1262 MYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYY 1321
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMMAVA+TPNHHIA++VS+ FYG+WN+FSGFI+PR R+P+WWRWYYW P++WTLYGL+
Sbjct: 1322 GMMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIG 1381
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQF D+ D +TV+ F+++Y+ +HDFLGVVAAV+V VLF F+FA+ IK FNFQ
Sbjct: 1382 SQFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQ 1441
Query: 1139 RR 1140
RR
Sbjct: 1442 RR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1759 bits (4557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1144 (75%), Positives = 985/1144 (86%), Gaps = 8/1144 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LRQ IHI +
Sbjct: 332 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 391
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FF SMGFRCP+RKGVADFLQ
Sbjct: 392 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 451
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ+QYWA K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL T
Sbjct: 452 EVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKT 511
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YGV K+ELL A ISRE LLMKRNSFVYIFKL Q+ +A + MT+FLRT+MHK++ DG
Sbjct: 512 EKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDG 571
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
I+ GA FF + M+ FNG SE++MTIAKLPVFYKQR F+P WAYA+PSWILKIP++F+
Sbjct: 572 SIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFV 631
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EVAVWVF+SYYV+G+D N GR FKQY LL+ VNQMASALFRFIA GRNM+VANTFGSF+
Sbjct: 632 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 691
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLG 419
LL+L +LGGF+LSRE++KKWW W YW SPL YAQNAIV NEFLG SW K + DS+E+LG
Sbjct: 692 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLG 751
Query: 420 VQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ 479
V VLKSRGFF YWYW+G GAL GF+L+ NF YT+ALT+L+ FEKP+AVITEE E++
Sbjct: 752 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESENS-- 809
Query: 480 DDRIGGNVQLST-LGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA--EASRPKKKGMVLP 536
+ GG ++LS+ GS + + ++I SS+ S AEA EA R KKGMVLP
Sbjct: 810 --KTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSSSVRAEAIAEARRNNKKGMVLP 867
Query: 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 596
F+P S+TF+++ YSVDMPEEMK QGVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTL
Sbjct: 868 FQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 927
Query: 597 MDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 656
MDVLAGRKTGGYI GNI ISGYPKKQETFARI GYCEQNDIHSP VTI+ESLL+SAWLRL
Sbjct: 928 MDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQNDIHSPHVTIHESLLYSAWLRL 987
Query: 657 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716
+VDS+TRKMFI+EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 988 PADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047
Query: 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYV
Sbjct: 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYV 1107
Query: 777 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYR 836
GPLGRHS HLI YFE I GV KIK GYNPATWMLEV+ ++QE LG+DFTE YK SDLYR
Sbjct: 1108 GPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSDLYR 1167
Query: 837 RNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAF 896
RNK LI++LS+P PGSKDLYFPTQ+SQS + Q +ACLWKQ SYWRNPPYTAVRFFFT F
Sbjct: 1168 RNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTF 1227
Query: 897 IALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKA 956
IAL+FG++FWDLG + K+ QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+A
Sbjct: 1228 IALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERA 1287
Query: 957 AGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFT 1016
AGMY+ +P+A AQ ++EIPY+ Q+VVYG IVYAMIGFEWTAAKFFWY+FFM+FTLL+FT
Sbjct: 1288 AGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFT 1347
Query: 1017 FYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGL 1076
FYGMMAVA TPN HIAAIV+ FYGLWN+FSGFI+PR RIP+WWRWYYWA P+AWTLYGL
Sbjct: 1348 FYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGL 1407
Query: 1077 VASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFN 1136
V SQFGD+ D+ DTG+TV+Q+L DYF F+HDFLGVVAAV+V F +LF F+FA IK FN
Sbjct: 1408 VTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTILFLFIFAFAIKAFN 1467
Query: 1137 FQRR 1140
FQRR
Sbjct: 1468 FQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460732|ref|XP_004148099.1| PREDICTED: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1756 bits (4547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1142 (71%), Positives = 978/1142 (85%), Gaps = 6/1142 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +
Sbjct: 314 MVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILN 373
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQ
Sbjct: 374 GTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQ 433
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYW +++ YRFV+V+EF+EAFQSFHVG+K+ DEL TPFDKSKSH AALTT
Sbjct: 434 EVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELATPFDKSKSHPAALTT 493
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YG K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG
Sbjct: 494 EKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDG 553
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA FFAI ++ FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+
Sbjct: 554 SVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFV 613
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +WV ++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFA
Sbjct: 614 EVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFA 673
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL +L LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV
Sbjct: 674 LLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGV 733
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE-- 478
+LKSRG F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++
Sbjct: 734 LILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSV 793
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ + ++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFE
Sbjct: 794 KKSQDVQELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFE 850
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
PHS+TFDE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 851 PHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 910
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P
Sbjct: 911 VLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPP 970
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
+VDS TRKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 971 DVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1030
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP
Sbjct: 1031 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGP 1090
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
+GRHS LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRN
Sbjct: 1091 VGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRN 1150
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KALI++LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIA
Sbjct: 1151 KALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIA 1210
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAG
Sbjct: 1211 LMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAG 1270
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFY
Sbjct: 1271 MYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFY 1330
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMM VA+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV
Sbjct: 1331 GMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVT 1390
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQFGD++D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ
Sbjct: 1391 SQFGDIND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQ 1449
Query: 1139 RR 1140
+R
Sbjct: 1450 KR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1755 bits (4546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1140 (73%), Positives = 970/1140 (85%), Gaps = 27/1140 (2%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN ++Q IHI +
Sbjct: 317 MVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYIHILN 376
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQ
Sbjct: 377 GTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQ 436
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ EL TPFDKSKSH AALTT
Sbjct: 437 EVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELSTPFDKSKSHPAALTT 496
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YGVGK ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V MTLFLRT+MH+D+VT+G
Sbjct: 497 KKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMTLFLRTEMHRDSVTNG 556
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
GI+ GA FF++ + FNG SEIS+TIAKLPVFYKQR F+PPWA+++P WI KIP++ +
Sbjct: 557 GIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWAFSLPPWITKIPITLV 616
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
+VA+WVFL+YYV+G+D N GRFFKQY LL V+QMAS LFRFIA GRNM+VANTFGSFA
Sbjct: 617 QVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAAAGRNMIVANTFGSFA 676
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL L +LGGFILSR++IKKWW W YW SPL Y QNAIV NEFLG+SW K D++ETLG+
Sbjct: 677 LLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGNSWNKVLPDTTETLGI 736
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
QVL+SRGFF H YWYW+G+GAL GF LL NF +TLALTFL P +KP+AVI+E+ SN
Sbjct: 737 QVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQKPQAVISEDSASN-TS 795
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
+ G +QLS++ T+ I E + K+KGMVLPFEPH
Sbjct: 796 GKTGEVIQLSSV-----------RTELI--------------VEENHQKQKGMVLPFEPH 830
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
S+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 831 SITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVL 890
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT+YESLL+S+WLRL PEV
Sbjct: 891 AGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEV 950
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
+SETRKMFI+EVMELVEL PLRQ+LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 951 NSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1010
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLG
Sbjct: 1011 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLG 1070
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
RHSC LI YFEAI GV IKDGYNPATWMLEVS+++QE+ LG+DF YK S+LYRRNKA
Sbjct: 1071 RHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKA 1130
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
LIE+LS PP GS DLYFPTQ+SQS + Q +ACLWKQHWSYWRNPPYTAVRF FT IAL+
Sbjct: 1131 LIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALM 1190
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FWDLG +T + QDLFNAMGSM+ A++FLG+Q SSVQP+V+VERTVFYRE+AAGMY
Sbjct: 1191 FGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMY 1250
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ +P+A AQV+IE+PYI +Q+ VYG IVYAMIGFEW+AAKFFWY+FFMYFTLLF+T+YGM
Sbjct: 1251 SPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGM 1310
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
MAVA+TPN +A+IVS+ FY +WN+FSGFIIPRPRIP+WWRWY W P+A+TLYGLV+SQ
Sbjct: 1311 MAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQ 1370
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
FGD+ +++GETV+ F++ YFDFKH+ LG VAA + FA LF F FA IK FNFQRR
Sbjct: 1371 FGDI-KHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1754 bits (4544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1142 (71%), Positives = 977/1142 (85%), Gaps = 6/1142 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +
Sbjct: 314 MVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILN 373
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQ
Sbjct: 374 GTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQ 433
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYW +++ YRFV+V+EF+EAFQSFHVG+K+ DEL TPFDKSKSH AALTT
Sbjct: 434 EVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELATPFDKSKSHPAALTT 493
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YG K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG
Sbjct: 494 EKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDG 553
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA FFAI + FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+
Sbjct: 554 SVYMGALFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFV 613
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +WV ++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFA
Sbjct: 614 EVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFA 673
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL +L LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV
Sbjct: 674 LLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGV 733
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE-- 478
+LKSRG F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++
Sbjct: 734 LILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSV 793
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ + ++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFE
Sbjct: 794 KKSQDVQELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFE 850
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
PHS+TFDE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 851 PHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 910
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P
Sbjct: 911 VLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPP 970
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
+VDS TRKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 971 DVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1030
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP
Sbjct: 1031 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGP 1090
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
+GRHS LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRN
Sbjct: 1091 VGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRN 1150
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KALI++LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIA
Sbjct: 1151 KALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIA 1210
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAG
Sbjct: 1211 LMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAG 1270
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFY
Sbjct: 1271 MYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFY 1330
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMM VA+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV
Sbjct: 1331 GMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVT 1390
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQFGD++D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ
Sbjct: 1391 SQFGDIND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQ 1449
Query: 1139 RR 1140
+R
Sbjct: 1450 KR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483991|ref|XP_004156752.1| PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1753 bits (4541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1142 (71%), Positives = 977/1142 (85%), Gaps = 6/1142 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +
Sbjct: 314 MVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILN 373
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+ISLLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQ
Sbjct: 374 GTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQ 433
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYW +++ YRFV+V+EF+EAF SFHVG+K+ DEL TPFDKSKSH AALTT
Sbjct: 434 EVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFXSFHVGKKLGDELATPFDKSKSHPAALTT 493
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
E YG K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG
Sbjct: 494 EKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDG 553
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA FFAI ++ FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+
Sbjct: 554 SVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFV 613
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV +WV ++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFA
Sbjct: 614 EVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFA 673
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL +L LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV
Sbjct: 674 LLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGV 733
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE-- 478
+LKSRG F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++
Sbjct: 734 LILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSV 793
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
+ + ++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFE
Sbjct: 794 KKSQDVQELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFE 850
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
PHS+TFDE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 851 PHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 910
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P
Sbjct: 911 VLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPP 970
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
+VDS TRKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 971 DVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1030
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP
Sbjct: 1031 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGP 1090
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
+GRHS LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRN
Sbjct: 1091 VGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRN 1150
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KALI++LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIA
Sbjct: 1151 KALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIA 1210
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAG
Sbjct: 1211 LMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAG 1270
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFY
Sbjct: 1271 MYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFY 1330
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMM VA+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV
Sbjct: 1331 GMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVT 1390
Query: 1079 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138
SQFGD++D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ
Sbjct: 1391 SQFGDIND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQ 1449
Query: 1139 RR 1140
+R
Sbjct: 1450 KR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1749 bits (4530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1143 (72%), Positives = 957/1143 (83%), Gaps = 33/1143 (2%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
MVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV+ LR +HI +
Sbjct: 315 MVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRHYVHILN 374
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMGFRCP+RKGVADFLQ
Sbjct: 375 GTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFRCPERKGVADFLQ 434
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL PFD++KSH AALTT
Sbjct: 435 EVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVPFDRTKSHPAALTT 494
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YG+ K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MTLFLRT+MH + + D
Sbjct: 495 KKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLFLRTEMHHENMDDA 554
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
G++AGA FF + V FNG +EISMTIAKLPVFYKQR+ F+P WAYAIPSWILKIPV+ +
Sbjct: 555 GVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYAIPSWILKIPVTIV 614
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EVAVWVFL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA GRNM+VANTFG+FA
Sbjct: 615 EVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALGRNMIVANTFGAFA 674
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
++ +++LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +SW +++ LGV
Sbjct: 675 IITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSW----HNATHNLGV 730
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
+ L+SR FF YWYWLGLGAL GFV L N + LAL FL PF+KP+A ITE+ SNE
Sbjct: 731 EYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQATITEDESSNE-- 788
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIR--GQQSSSQSLSLAEAEASRPKKKGMVLPFE 538
G+ DI G +SS + SL E+ S KKKGMVLPFE
Sbjct: 789 ----------------------GTLADIELPGIESSGRGDSLVES--SHGKKKGMVLPFE 824
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
PHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMD
Sbjct: 825 PHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMD 884
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 885 VLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPS 944
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
VDS+TRKMFI+EVMELVELNP+R SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 945 SVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1004
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP
Sbjct: 1005 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1064
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
LGRHS HLI YFE+I GV KIKDGYNPATWMLEV+A +QEL+LG+DFT+ YK SDLYRRN
Sbjct: 1065 LGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRN 1124
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
K LI++L +P PGSKDL+FPTQ+SQS +Q ACLWKQ WSYWRNPPYTAVRFFFT FIA
Sbjct: 1125 KQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIA 1184
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
L+FG++FWDLGG+ DL NA+GSM+TAVLFLGVQ SSVQP+V++ERTVFYREKAAG
Sbjct: 1185 LMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAG 1244
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018
MY+ +P+A AQ+++E+PY+ VQ+V YG IVYAMIGFEWTA KFFWY+FFMYFTLL++TFY
Sbjct: 1245 MYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFY 1304
Query: 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1078
GMM V LTPNHHIA+IV+ FY +WN+FSGF++ RP IP+WWRWYYWA P+AWT+YGLVA
Sbjct: 1305 GMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVA 1364
Query: 1079 SQFGDMDDKKMDTGET-VKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137
SQFGD+ + G+ VK FL+DY+ KHDF+GV A V+ AVLF +FA+ IK FNF
Sbjct: 1365 SQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNF 1424
Query: 1138 QRR 1140
Q+R
Sbjct: 1425 QKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1742 bits (4512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1140 (70%), Positives = 965/1140 (84%), Gaps = 4/1140 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGDEM RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDS+TTFQIVN LRQ++HI S
Sbjct: 314 LVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTFQIVNSLRQSVHILS 373
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTA+I+LLQPAPET++LFDDIILLSDGQIVYQGPRE VL+FF MGF+CP+RKGVADFLQ
Sbjct: 374 GTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMGFKCPERKGVADFLQ 433
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTSRKDQ QYWAHK++PY FV+V EF+EAFQSFH+G+K+ DEL TPFDKSK+H +LTT
Sbjct: 434 EVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELATPFDKSKAHPDSLTT 493
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YGV K+EL KA ISRE LLMKRNSFVYIFK+ Q+ + + MTLFLRT+MH++T TDG
Sbjct: 494 KKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTLFLRTEMHRNTETDG 553
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
G++ GA FF +T + FNGFSE++MTI KLPVFYKQRD F+P WAYA+P+WILKIP++F+
Sbjct: 554 GVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAYALPTWILKIPITFV 613
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EVAVWV ++YYV+G+D N RFFKQY +LL NQMASALFR A GRN++VANT G+FA
Sbjct: 614 EVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAALGRNIIVANTVGAFA 673
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
+L L LGGF++SR+++KKWW W YW SP+ Y QNAI NEFLG SW F +S++ LGV
Sbjct: 674 MLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSSWNHFPPNSTKPLGV 733
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
+LKSRG F YWYW+G GAL G++ L NF +TLAL +LDPF KP+A+I++E S +
Sbjct: 734 TLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKPQAIISKEAYSEKTA 793
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
R G ++LS+ N R ++ + ++SS +S + + A K+GMVLPF+P
Sbjct: 794 VRTGEFIELSS--KEKNFQERGSASHRVASSRTSSARVS-SLSNAFENSKRGMVLPFQPL 850
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
S+TF +V Y+V MP+EMK QG+ ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 851 SITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 910
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI GNITISGYPKKQETFARISGYCEQ DIHSP VT+YESLL+SAWLRL PEV
Sbjct: 911 AGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEV 970
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
DS+TR MF++EVMELVEL LR++LVGLPGV+GLS EQRKRLT+AVELVANPSIIFMDEP
Sbjct: 971 DSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVELVANPSIIFMDEP 1030
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL L+KRGG+EIYVGP+G
Sbjct: 1031 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPVG 1090
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
RH+CHLI YFE I G+ KIKDGYNPATWMLEV+ +QE+ALG+DF++ YK S+LYR+NKA
Sbjct: 1091 RHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSDIYKNSELYRKNKA 1150
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
LI++LSRP PGSKDLYFPTQ+S+S Q +ACLWKQHWSYWRNPPYTAVR F FIAL+
Sbjct: 1151 LIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYTAVRLVFATFIALM 1210
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FW LG + R QD+FNAMGSM+ AVLFLG ++VQP+V++ERTVFYRE+AAGMY
Sbjct: 1211 FGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIERTVFYRERAAGMY 1270
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ + +A QVMIE+PYIL+Q+++YG IVYAM+GFEWT +KFFWY+FFMYFTLL+FTFYGM
Sbjct: 1271 SALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFFMYFTLLYFTFYGM 1330
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
M VA+TPNH+IAAIVS+ FY +WN+FSGFI+PR RIPIWWRWYYWA PIAWTLYGLVASQ
Sbjct: 1331 MNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWACPIAWTLYGLVASQ 1390
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
FGD+ + ++DTGETV+ FL+ YF F+HDF+G+VA VLV VLFGFLFA I+ FNFQRR
Sbjct: 1391 FGDIKE-ELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572793|ref|XP_002527329.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533329|gb|EEF35081.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1738 bits (4500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1140 (72%), Positives = 965/1140 (84%), Gaps = 20/1140 (1%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VG+EMIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ+IHI +
Sbjct: 315 LVGNEMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSIHILN 374
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
GTAVISLLQPAPETY+LFDDIIL+SDGQIVYQGPRE VL+FF MGF+CP+RKGVADFLQ
Sbjct: 375 GTAVISLLQPAPETYNLFDDIILISDGQIVYQGPREHVLDFFEYMGFKCPERKGVADFLQ 434
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ+QYWA KE+PY +V V+EFAE FQS+ +G++I +EL TP+DK+KSH AAL+T
Sbjct: 435 EVTSKKDQQQYWARKEQPYTYVPVKEFAETFQSYDLGRRIGEELSTPYDKTKSHPAALST 494
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ YGVGK EL KA +RE LLMKRNSFV+IFKL Q+ +A + T+FLRT+M KDTVTDG
Sbjct: 495 KRYGVGKMELFKACFAREYLLMKRNSFVFIFKLCQLLVMAFIGTTVFLRTEMSKDTVTDG 554
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
I+ GA FF++ V FNG SE+SMTIAKLPVFYKQRD FFPPWAY+IPSWILKIP++FL
Sbjct: 555 NIYTGALFFSLITVMFNGMSELSMTIAKLPVFYKQRDLLFFPPWAYSIPSWILKIPITFL 614
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
EV VWVF++YYV+G+D N R F+Q+ LLL VNQMAS LFRFIA GRNM++ANTFGSFA
Sbjct: 615 EVGVWVFITYYVMGFDPNVERLFRQFFLLLLVNQMASGLFRFIASVGRNMIIANTFGSFA 674
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGV 420
LL L +LGGF+LSREDIKKWW W +W SPL Y QNAI+ NEFLGHSW T S+++LGV
Sbjct: 675 LLTLFALGGFVLSREDIKKWWIWGFWVSPLMYGQNAILVNEFLGHSWTNST--SNDSLGV 732
Query: 421 QVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQD 480
QVL SRGFF WYWLG+ A G+++L N YT+ALT L FEKP AVI ++ ES+
Sbjct: 733 QVLSSRGFFTESKWYWLGVIASAGYMVLFNILYTIALTVLGSFEKPTAVIADDHESS--- 789
Query: 481 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540
D GG +QLS + S NT SG++ EA++ KKKGMVLPFEPH
Sbjct: 790 DVTGGAIQLSQVESSRRSNTESGTS---------------RHDEANQSKKKGMVLPFEPH 834
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
SLTFD V+YSVDMP+EM+ QGVLEDKLVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 835 SLTFDNVIYSVDMPQEMRNQGVLEDKLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 894
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL++SAWLRL EV
Sbjct: 895 AGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPAEV 954
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
DS+TRKMF++EV++LVELN R SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 955 DSDTRKMFVEEVIDLVELNAQRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG
Sbjct: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLG 1074
Query: 781 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 840
RHSCHLI+YFE + GV K+ DGYNPATWMLEV++++QEL LG+DF Y+ SDLYRRNKA
Sbjct: 1075 RHSCHLINYFEGLEGVSKVTDGYNPATWMLEVTSSAQELTLGVDFANLYRNSDLYRRNKA 1134
Query: 841 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 900
+I++LS+P PG+KDLYFPTQ+SQS Q +ACLWKQ+WSYWRNPPYTAVRF+FT FIAL+
Sbjct: 1135 MIQELSKPAPGTKDLYFPTQYSQSFLTQCMACLWKQYWSYWRNPPYTAVRFWFTTFIALM 1194
Query: 901 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 960
FG++FWDLG +T QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+AAGMY
Sbjct: 1195 FGTIFWDLGSKTSEPQDLTNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMY 1254
Query: 961 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1020
+ +P+A AQ +IE+PYI VQS Y I YAMIGFEW AAKF WY+FF+YFTL++FTFYGM
Sbjct: 1255 SAMPYAYAQALIEVPYIFVQSAAYSIITYAMIGFEWDAAKFLWYLFFLYFTLMYFTFYGM 1314
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
MAVA TPNHHIA+IVS+ FY +WNVF+GFI+PR R+P+WWRWYYW PI+WTLYGL+ASQ
Sbjct: 1315 MAVAFTPNHHIASIVSSAFYSIWNVFAGFIVPRTRLPVWWRWYYWGCPISWTLYGLIASQ 1374
Query: 1081 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140
+GD+ G+TV++++++++ KHDFLGV AAV+V + F F+FA+ IK FNFQRR
Sbjct: 1375 YGDVKTLIGSDGQTVEEYVEEFYGMKHDFLGVTAAVIVGITIGFAFIFAVSIKAFNFQRR 1434
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1140 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.991 | 0.769 | 0.543 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.536 | 0.430 | 0.710 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.535 | 0.420 | 0.615 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.535 | 0.423 | 0.608 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.535 | 0.430 | 0.606 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.535 | 0.420 | 0.612 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.535 | 0.431 | 0.601 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.535 | 0.428 | 0.578 | 1.4e-311 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.533 | 0.419 | 0.532 | 1.2e-294 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.533 | 0.430 | 0.519 | 4.4e-288 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3251 (1149.5 bits), Expect = 0., P = 0.
Identities = 623/1146 (54%), Positives = 799/1146 (69%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q +H+N
Sbjct: 334 IVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNE 393
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQ
Sbjct: 394 ATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQ 453
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ QYW + +PY ++ V EFA ++SFHVG K+S+EL PFDKS+ H+AAL
Sbjct: 454 EVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVF 513
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
+ Y V KRELLK+ +E LLM+RN+F Y+FK +QI +A + TLFLRT+M+ D
Sbjct: 514 DKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDA 573
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA F + + FNGF+E++M +++LPVFYKQRD F+P W +++P+++L IP S L
Sbjct: 574 NLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSIL 633
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXX 360
E W+ ++YY +G+ +A RFFKQ+ L+ + QMA++LFR IA R M++ANT
Sbjct: 634 ESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALT 693
Query: 361 XXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW--KKFTQDSSETL 418
+ I WW WAYW SPLTYA N +V NE W K + +S+ L
Sbjct: 694 LLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKL 753
Query: 419 GVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNE 478
G VL + + + WYW +TLALT+L+P K ++ EE NE
Sbjct: 754 GTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEE--ENE 811
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGXXXXXXXXXXXXXXXXRPKKKGMVLPFE 538
D+ G + +L S+ R G G KKGMVLPF
Sbjct: 812 DADQ-GKDPMRRSL--STADGNRRGEV--AMGRMSRDSAAEASGGAG---NKKGMVLPFT 863
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
P +++FD+V Y VDMP EM+ QGV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMD
Sbjct: 864 PLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMD 923
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKTGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VT+ ESL+FSA+LRL
Sbjct: 924 VLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPK 983
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
EV + + MF+D+VMELVEL+ LR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 984 EVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1043
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
EPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GP
Sbjct: 1044 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGP 1103
Query: 779 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 838
LG++S ++ YFE+ PGV KI + YNPATWMLE S+ + EL L +DF E Y +S L++RN
Sbjct: 1104 LGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRN 1163
Query: 839 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 898
KAL+++LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P Y VRF FT +
Sbjct: 1164 KALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATS 1223
Query: 899 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 958
LL G++FW +GG DL +G+++ A++F+G+ CS+VQP+V+VERTVFYRE+AAG
Sbjct: 1224 LLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAG 1283
Query: 959 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXXXXXXXX 1018
MY+ +P+A++QV E+PY+L+Q+V Y IVYAM+GFEW A KFFW++
Sbjct: 1284 MYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYY 1343
Query: 1019 XXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVA 1078
M V+LTPN +A+I ++ FYG++N+FSGF YYW P+AWT+YGL+
Sbjct: 1344 GMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIV 1403
Query: 1079 SQFGDMDDKKMDTGE----TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKM 1134
SQ+GD++ + G TVKQ+++D++ F+ D I+
Sbjct: 1404 SQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRT 1463
Query: 1135 FNFQRR 1140
NFQ R
Sbjct: 1464 LNFQTR 1469
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2313 (819.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 435/612 (71%), Positives = 499/612 (81%)
Query: 529 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 588
KK+GMVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLTALMGV
Sbjct: 812 KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGV 871
Query: 589 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648
SGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT+YESL
Sbjct: 872 SGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESL 931
Query: 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708
++SAWLRL EVD RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVEL
Sbjct: 932 VYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVEL 991
Query: 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+K
Sbjct: 992 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1051
Query: 769 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 828
RGG+EIYVGPLG S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+DF +
Sbjct: 1052 RGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQV 1111
Query: 829 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 888
YK S+LY+RNK LI++LS+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRNPPYTA
Sbjct: 1112 YKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTA 1171
Query: 889 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 948
VRF FT IAL+FG++FWDLGG+TK QDL NAMGSM+TAVLFLG+Q +SVQP+V+VER
Sbjct: 1172 VRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVER 1231
Query: 949 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1008
TVFYRE+AAGMY+ +P+A AQV IEIPY+LVQ++VYG IVYAMIGFEWTA KFFWY+
Sbjct: 1232 TVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFM 1291
Query: 1009 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1068
MAVA+TPNHHIA++VS+ FYG+WN+FSGF YYW P
Sbjct: 1292 YGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCP 1351
Query: 1069 IAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXX 1128
+AWTLYGL+ASQFGD+ + D+ +VKQF+++++ ++
Sbjct: 1352 VAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIF 1411
Query: 1129 XXXIKMFNFQRR 1140
IK FNFQ+R
Sbjct: 1412 AIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1968 (697.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 378/614 (61%), Positives = 448/614 (72%)
Query: 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 589
K+GMVLPF+P SL F+ V Y VDMP EMK QGV D+L LL V GAFRPG+LTAL+GVS
Sbjct: 841 KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVS 900
Query: 590 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649
GAGKTTLMDVLAGRKTGGYI G+I+ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL+
Sbjct: 901 GAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLI 960
Query: 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 709
+SAWLRLS ++D +TR++F++EVMELVEL PLR S+VGLPGV GLSTEQRKRLTIAVELV
Sbjct: 961 YSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELV 1020
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKR
Sbjct: 1021 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKR 1080
Query: 770 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 829
GGQ IY G LG HS L+ YFEA+ GV KI DGYNPATWML+V+ S E + +DF + +
Sbjct: 1081 GGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIF 1140
Query: 830 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 889
S LYRRN+ LI+DLS PPPGSKD+YF T+++QS Q AC WKQ+WSYWR+P Y A+
Sbjct: 1141 SNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAI 1200
Query: 890 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 949
RF T I +LFG +FW +G +T+ QDL N G+M+ AVLFLG ++VQP +++ERT
Sbjct: 1201 RFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERT 1260
Query: 950 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1009
VFYREKAAGMY+ IP+A++QV +EI Y +Q+ VY I+Y+MIG WT AKF W+
Sbjct: 1261 VFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYML 1320
Query: 1010 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1069
M +ALTPN+ IA I + F LWN+FSGF YYWA P+
Sbjct: 1321 TSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPV 1380
Query: 1070 AWTLYGLVASQFGDMDDKKMDTGE---TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXX 1126
AWTLYGL+ SQ GD D +G +K LK+ F F+HD
Sbjct: 1381 AWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLF 1440
Query: 1127 XXXXXIKMFNFQRR 1140
IK NFQRR
Sbjct: 1441 VFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/615 (60%), Positives = 459/615 (74%)
Query: 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 589
KKGMVLPF P +++FD+V Y VDMP EM+ QGV E +L LL GV+ AFRPGVLTALMGVS
Sbjct: 828 KKGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVS 887
Query: 590 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649
GAGKTTLMDVLAGRKTGGYI G++ +SG+PKKQETFARISGYCEQ DIHSP VT+ ESL+
Sbjct: 888 GAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLI 947
Query: 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 709
FSA+LRL+ EV E + MF+D+VMELVEL LR ++VGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 948 FSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELV 1007
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769
ANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKR
Sbjct: 1008 ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1067
Query: 770 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 829
GG IY GPLGR+S ++ YFE+ PGV KI + YNPATWMLE S+ + EL LG+DF E Y
Sbjct: 1068 GGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELY 1127
Query: 830 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 889
K S L +RNKAL+++LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P Y V
Sbjct: 1128 KASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLV 1187
Query: 890 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 949
RF FT +L+ GS+FW +GG+ QDL +G+++ AV+F+G+ CS+VQP+V+VERT
Sbjct: 1188 RFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERT 1247
Query: 950 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1009
VFYREKAAGMY+ IP+A++QV E+PY+L+Q+ Y I+Y+M+GFEW A+KF W+I
Sbjct: 1248 VFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINY 1307
Query: 1010 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1069
M V+LTPN +A+I ++ FYG++N+FSGF YYW P+
Sbjct: 1308 FSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPV 1367
Query: 1070 AWTLYGLVASQFGDMDDKKM----DTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1125
AWT+YGL+ SQ+GD++ G TVKQ++KD + F+ D
Sbjct: 1368 AWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFA 1427
Query: 1126 XXXXXXIKMFNFQRR 1140
IK NFQ R
Sbjct: 1428 FIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1952 (692.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/617 (60%), Positives = 459/617 (74%)
Query: 529 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 588
K +GMVLPF+P SL+F + Y VD+P +K QG+LED+L LL ++GAFRPGVLTAL+GV
Sbjct: 805 KNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGV 864
Query: 589 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648
SGAGKTTLMDVLAGRKTGG I G++ ISG+PK+QETFARISGYCEQND+HSP +T+ ESL
Sbjct: 865 SGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESL 924
Query: 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708
LFSA LRL ++DSET++ F+ EVMELVEL L +LVGLPGV GLSTEQRKRLTIAVEL
Sbjct: 925 LFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVEL 984
Query: 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768
VANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MK
Sbjct: 985 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1044
Query: 769 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 828
RGG+ IY GPLG+ SC LI YFE+I GVQKIK G+NPA WML+V+A+++E LG+DF E
Sbjct: 1045 RGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEI 1104
Query: 829 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 888
Y+ S+L +RNK LIE LS+P +K++ FPT++SQS + QFVACLWKQ+ SYWRNP YTA
Sbjct: 1105 YRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTA 1164
Query: 889 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 948
VRFF+T I+L+ G++ W G + Q LFNAMGSM+ AVLF+G+ ++ QP+VS+ER
Sbjct: 1165 VRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIER 1224
Query: 949 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1008
V YRE+AAGMY+ +P+A AQV IE PY+L QS +Y I YAM FEW+A KF WY+
Sbjct: 1225 FVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFM 1284
Query: 1009 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1068
M A+TPNH++A+I++ FY LWN+FSGF YYWANP
Sbjct: 1285 YFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANP 1344
Query: 1069 IAWTLYGLVASQFGDMDDK--KMDTG---ETVKQFLKDYFDFKHDXXXXXXXXXXXXXXX 1123
+AWTLYGL+ SQ+GD D++ K+ G VKQ L+D +KHD
Sbjct: 1345 VAWTLYGLLVSQYGD-DERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVF 1403
Query: 1124 XXXXXXXXIKMFNFQRR 1140
IK FNFQRR
Sbjct: 1404 FSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1938 (687.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 376/614 (61%), Positives = 444/614 (72%)
Query: 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 589
KKGMVLPF+P SL F+ V Y VDMP EMK QGV D+L LL V GAFRPGVLTAL+GVS
Sbjct: 840 KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVS 899
Query: 590 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649
GAGKTTLMDVLAGRKTGGY+ G+I ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL+
Sbjct: 900 GAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLI 959
Query: 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 709
+SAWLRLS ++D++TR+MF++EVMELVEL PLR S+VGLPGV GLSTEQRKRLTIAVELV
Sbjct: 960 YSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELV 1019
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKR
Sbjct: 1020 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKR 1079
Query: 770 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 829
GGQ IY G LG HS L+ YFEAI GV KIKDGYNPATWML+V+ S E + +DF + +
Sbjct: 1080 GGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIF 1139
Query: 830 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 889
S + RRN+ LI++LS PPPGS DLYF T+++Q Q AC WK +WS WR P Y A+
Sbjct: 1140 VNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAI 1199
Query: 890 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 949
RF T I +LFG LFW G + ++ QDL N G+M+ AVLFLG ++VQP V++ERT
Sbjct: 1200 RFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERT 1259
Query: 950 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1009
VFYREKAAGMY+ IP+A++QV +EI Y +Q+ VY I+Y+MIG++WT KFFW+
Sbjct: 1260 VFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYML 1319
Query: 1010 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1069
M VALTPN+ IA I + F WN+FSGF YYWA+P+
Sbjct: 1320 TCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPV 1379
Query: 1070 AWTLYGLVASQFGDMDDKKMDTGE---TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXX 1126
AWTLYG++ SQ GD D TG ++K LK+ F F +D
Sbjct: 1380 AWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLF 1439
Query: 1127 XXXXXIKMFNFQRR 1140
IK NFQRR
Sbjct: 1440 AFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 370/615 (60%), Positives = 454/615 (73%)
Query: 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 589
K+GMVLPF P +++FD V Y VDMP+EMK QGV +DKL LL V+G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 590 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649
GAGKTTLMDVLAGRKTGGYI G+I ISG+PK+QETFARISGYCEQNDIHSP VT+ ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 709
+SA+LRL EV + F+DEVMELVEL L+ ++VGLPG++GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 770 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 829
GGQ IY GPLG++S +I YF+AI GV KIK+ YNPATWMLEVS+ + E L IDF EHY
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 830 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 889
K S LY++NK L+++LS PP G+ DLYF T+FSQS QF +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 890 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 949
RFFFT A++ GS+FW +G + + DL +G+M+ AVLF+GV SSVQP+++VER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 950 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1009
VFYRE+AA MY+ +P+ALAQV+ EIPY+L+Q+ Y I+YAM+ FEWT AKFFW+
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1010 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1069
M VALTPN +AA+ + FYGL+N+FSGF YYW P+
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1070 AWTLYGLVASQFGDMDDK-K---MDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1125
AWT+YGL+ SQ+GD++D K M T+K ++++++ + D
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFA 1401
Query: 1126 XXXXXXIKMFNFQRR 1140
I+ NFQ+R
Sbjct: 1402 FMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1796 (637.3 bits), Expect = 1.4e-311, Sum P(2) = 1.4e-311
Identities = 356/615 (57%), Positives = 439/615 (71%)
Query: 529 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 588
+KKGM+LPF+P ++TF V Y VDMP+EM+ QGV E +L LL+ VSG F PGVLTAL+G
Sbjct: 813 EKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGS 872
Query: 589 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648
SGAGKTTLMDVLAGRKTGGY G+I ISG+PK+Q+TFARISGY EQNDIHSP VT+ ESL
Sbjct: 873 SGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESL 932
Query: 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708
FSA LRL E+ E +K F+++VM LVEL+ LR +LVGLPG +GLSTEQRKRLTIAVEL
Sbjct: 933 WFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVEL 992
Query: 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMK
Sbjct: 993 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1052
Query: 769 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 828
RGGQ IY G LG HS L+ YF+ I GV I GYNPATWMLEV+ + E ++F +
Sbjct: 1053 RGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADL 1112
Query: 829 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 888
YK+SD +R +A I+ LS PP GS+ + F +++SQ+ QF+ CLWKQ+ YWR+P Y
Sbjct: 1113 YKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNL 1172
Query: 889 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 948
VR FT A + G++FWD+G + +QDL MG++++A LFLGV SSVQPIVS+ER
Sbjct: 1173 VRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIER 1232
Query: 949 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1008
TVFYREKAAGMYA IP+A AQ ++EIPYIL Q+++YG I Y IGFE T +KF Y+
Sbjct: 1233 TVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFM 1292
Query: 1009 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1068
MAV LTPN H+AA++S+ FY LWN+ SGF +Y+ P
Sbjct: 1293 FLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICP 1352
Query: 1069 IAWTLYGLVASQFGDMD---DKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1125
+AWTL G++ SQ GD++ ++ + G TVK+F++ YF +K +
Sbjct: 1353 VAWTLQGVILSQLGDVESMINEPLFHG-TVKEFIEYYFGYKPNMIGVSAAVLVGFCALFF 1411
Query: 1126 XXXXXXIKMFNFQRR 1140
+K NFQRR
Sbjct: 1412 SAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1693 (601.0 bits), Expect = 1.2e-294, Sum P(2) = 1.2e-294
Identities = 325/610 (53%), Positives = 420/610 (68%)
Query: 533 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 592
MVLPF+P ++TF ++ Y VDMP EM+ QG + KL LL+ ++GAFRPG+LTALMGVSGAG
Sbjct: 841 MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAG 900
Query: 593 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 652
KTTL+DVLAGRKT GYI G+I ISG+PK QETFAR+SGYCEQ DIHSP +T+ ES+++SA
Sbjct: 901 KTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSA 960
Query: 653 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712
WLRL+PE+D+ T+ F+ +V+E +EL+ ++ SLVG+ GVSGLSTEQRKRLTIAVELVANP
Sbjct: 961 WLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANP 1020
Query: 713 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772
SIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDIFEAFDEL L+KRGG+
Sbjct: 1021 SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGR 1080
Query: 773 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 832
IY GPLG+HS H+I YFE++P + KIKD +NPATWML+VS+ S E+ LG+DF + Y S
Sbjct: 1081 MIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDS 1140
Query: 833 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 892
LY+RN L++ LS+P GS D+ F F+QS W QF + LWK + SYWR+P Y +R
Sbjct: 1141 ALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMM 1200
Query: 893 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 952
T +L+FG+LFW G Q +F G+++ VLFLG+ C+S ER V Y
Sbjct: 1201 HTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMY 1260
Query: 953 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXX 1012
RE+ AGMY+ +AL QV+ EIPYI +Q+ + + Y MIGF +A K FW +
Sbjct: 1261 RERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSL 1320
Query: 1013 XXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWT 1072
V++TPN +AAI+ +LFY +N+FSGF Y+ P +WT
Sbjct: 1321 LTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWT 1380
Query: 1073 LYGLVASQFGDMDDKKMDTGE--TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1130
L G ++SQ+GD+ ++ G+ TV +FLKDYF F HD
Sbjct: 1381 LNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAF 1440
Query: 1131 XIKMFNFQRR 1140
+ NFQRR
Sbjct: 1441 FVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1648 (585.2 bits), Expect = 4.4e-288, Sum P(2) = 4.4e-288
Identities = 317/610 (51%), Positives = 415/610 (68%)
Query: 533 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 592
M+LPF+P ++TF ++ Y VD+P EMK QG E KL LL+ ++GAFRPGVLTALMG+SGAG
Sbjct: 804 MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAG 863
Query: 593 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 652
KTTL+DVLAGRKT GYI G I ISG+ K QETFAR+SGYCEQ DIHSP +T+ ESL++SA
Sbjct: 864 KTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSA 923
Query: 653 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712
WLRL PE++ +T+ F+ +V+E +EL ++ +LVG+ GVSGLSTEQRKRLT+AVELVANP
Sbjct: 924 WLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANP 983
Query: 713 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772
SIIFMDEPT+GLDARAAAIVMR V+N +TGRT+VCTIHQPSI IFEAFDEL L+KRGG+
Sbjct: 984 SIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGR 1043
Query: 773 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 832
IY GPLG+HS +I YF+ IPGV KI+D YNPATWMLEV++ S E L +DF + Y S
Sbjct: 1044 MIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNES 1103
Query: 833 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 892
DLY+ N L+++LS+P GS DL+F F+Q+ W QF +CLWK SYWR+P Y +R
Sbjct: 1104 DLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIG 1163
Query: 893 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 952
T + +FG LFW+ G + Q+LF +G+++ VLF+G+ C+S ER V Y
Sbjct: 1164 HTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMY 1223
Query: 953 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXX 1012
RE+ AGMY+ +ALAQV+ EIPYI +QS + ++Y MIGF + +K FW +
Sbjct: 1224 RERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNL 1283
Query: 1013 XXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWT 1072
+++TPN +AAI+ +LF+ +N+F+GF +Y+ P +WT
Sbjct: 1284 LCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWT 1343
Query: 1073 LYGLVASQFGDMDDKKMDTGET--VKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1130
L +SQ+GD+ K GET V FL+DYF F HD
Sbjct: 1344 LNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAF 1403
Query: 1131 XIKMFNFQRR 1140
+ NFQ+R
Sbjct: 1404 FVAKLNFQKR 1413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC84 | AB39G_ARATH | No assigned EC number | 0.5968 | 0.9745 | 0.7640 | yes | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7059 | 0.9868 | 0.7721 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6973 | 0.9710 | 0.7779 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7184 | 0.9745 | 0.7747 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7099 | 0.9719 | 0.7715 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7050 | 0.9868 | 0.7721 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1140 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-101 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-73 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-55 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-51 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-44 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-44 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-39 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-19 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-17 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-13 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-06 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 4e-06 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-06 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-05 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-05 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-05 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-04 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-04 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-04 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-04 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 0.001 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 0.001 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.001 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.002 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.002 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 0.003 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 0.003 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 0.004 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.004 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.004 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.004 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1688 bits (4373), Expect = 0.0
Identities = 699/1145 (61%), Positives = 870/1145 (75%), Gaps = 7/1145 (0%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+VGDEMIRGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL+Q +H+
Sbjct: 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE 387
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQ
Sbjct: 388 ATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447
Query: 121 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTT 180
EVTS+KDQ QYWA + KPYR+++V EFAE F+SFHVG ++ +EL PFDKS+SH+AAL
Sbjct: 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVF 507
Query: 181 ETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240
Y V K ELLKA +E LLMKRN+FVY+FK +QI VA + T+FLRT+MH DG
Sbjct: 508 SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567
Query: 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 300
++ GA F++ + FNGF+E+++ I +LPVFYKQRD F PPW + +P+++L IP+S +
Sbjct: 568 ALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISII 627
Query: 301 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 360
E VWV ++YY +G+ A RFFKQ L+ + QMA+ +FR IA R M++ANT G+
Sbjct: 628 ESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV 687
Query: 361 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLG 419
LL++ LGGFIL + +I WW+WAYW SPL+Y NA+ NE W K D+S LG
Sbjct: 688 LLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLG 747
Query: 420 VQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ 479
VL F + WYW+G+GAL GF +L N +TLALT+L+P K +A+I+EE +
Sbjct: 748 TAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEME 807
Query: 480 DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEP 539
+ LS+ G++ + G + S EA K+GMVLPF P
Sbjct: 808 GEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS--LEAANGVAPKRGMVLPFTP 865
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 599
+++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDV 925
Query: 600 LAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 659
LAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT+ ESL++SA+LRL E
Sbjct: 926 LAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985
Query: 660 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719
V E + MF+DEVMELVEL+ L+ ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045
Query: 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GPL
Sbjct: 1046 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105
Query: 780 GRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNK 839
GR+S +I YFEAIPGV KIK+ YNPATWMLEVS+ + E+ LGIDF EHYK S LY+RNK
Sbjct: 1106 GRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNK 1165
Query: 840 ALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIAL 899
AL+++LS PPPG+ DLYF TQ+SQS+W QF +CLWKQ W+YWR+P Y VRFFFT AL
Sbjct: 1166 ALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAAL 1225
Query: 900 LFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGM 959
+ G++FW +G + DL +G+M+ AVLF+G+ CS+VQP+V+VERTVFYRE+AAGM
Sbjct: 1226 MVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285
Query: 960 YAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYG 1019
Y+ +P+A+AQV+ EIPY+L+Q+ Y IVYAM+ FEWTAAKFFW+ F +F+ L+FT+YG
Sbjct: 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYG 1345
Query: 1020 MMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVAS 1079
MM V+LTPN +AAI + FYGL+N+FSGF IPRP+IP WW WYYW P+AWT+YGL+ S
Sbjct: 1346 MMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVS 1405
Query: 1080 QFGDMDDK----KMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMF 1135
Q+GD++D T+K +++D++ + DF+G VAAVLV F V F F+FA I+
Sbjct: 1406 QYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTL 1465
Query: 1136 NFQRR 1140
NFQ R
Sbjct: 1466 NFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1013 bits (2622), Expect = 0.0
Identities = 356/1234 (28%), Positives = 567/1234 (45%), Gaps = 141/1234 (11%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
VG++ +RG+SGG++KRV+ E +G A D + GLDS+T + + L+ + +I
Sbjct: 202 VGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDT 261
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 121
T ++++ Q + + Y+LFD +I+L +G +Y GP + ++F MGF+CP R+ ADFL
Sbjct: 262 TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTS 321
Query: 122 VTSRKDQRQYWAHKEKP-YRFVTVQEFAEAFQSFHVGQKISDELRTPFDK---------- 170
+TS +RQ EK R T QEF +++ ++ E+ D+
Sbjct: 322 LTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378
Query: 171 -----SKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 225
+K + + Y V +K ++R L MK N +F + +A++ +
Sbjct: 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSS 438
Query: 226 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 285
+F + G GA FFAI F+ EI+ P+ K R + + P A
Sbjct: 439 VFYNLPKNTSDFYSRG---GALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSA 495
Query: 286 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 345
AI S I +IP +E V+ + Y++V + AGRFF +L S LFR I
Sbjct: 496 DAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGA 555
Query: 346 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 405
+ + A T + LL L GF + R + W KW Y+ +PL YA +++ NEF G
Sbjct: 556 VTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGR 615
Query: 406 SWKKFTQ----DSSETLGVQ---------------VLKS---RGFFAHEY-WYWLGLGAL 442
++ + LGV V + F + W G +
Sbjct: 616 RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGII 675
Query: 443 FGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRS 502
GF + F Y L F ++ ++ + + + G T +
Sbjct: 676 IGFTVFFFFVYILLTEFNKGAKQKGEILVFR-RGSLKRAKKAG-------------ETSA 721
Query: 503 GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV--- 559
+ +DI + G VL + D+V DM +E
Sbjct: 722 SNKNDI---------------------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIF 760
Query: 560 --------QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 611
+ ++K V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 612 NITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 671
+ +F R GY +Q D+H P T+ ESL FSA+LR V + +++E
Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880
Query: 672 VMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAA 730
V++L+E+ ++VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A
Sbjct: 881 VIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939
Query: 731 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 790
+ + +R D G+ ++CTIHQPS +FE FD L L+++GGQ +Y G LG +S +I+YF
Sbjct: 940 SICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYF 999
Query: 791 EAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPP 850
E G K + NPA WMLEV A+ D+ E ++ S Y+ K ++ L
Sbjct: 1000 E-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELS 1058
Query: 851 GSKDLYFPT---QFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWD 907
++D P +++ S W QF LW+ YWR P Y +FF T F AL G F+
Sbjct: 1059 KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFK 1118
Query: 908 LGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWAL 967
+G Q L N M ++F A + + P V+ RE+ + ++ + +
Sbjct: 1119 VG---TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIA 1175
Query: 968 AQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAK-------FFWYIFFMYFTLLFFTFYGM 1020
AQ+ +EIPY LV ++ I Y +GF W A+K + L+F+ G
Sbjct: 1176 AQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235
Query: 1021 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1080
M ++ PN AA++++L + + F G + P R+P +W + Y +P + + L+++
Sbjct: 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTG 1295
Query: 1081 FGDMDDK---------KMDTGETVKQFLKDY---------------------FDFKHDFL 1110
D+ +G+T +++K Y + + +DFL
Sbjct: 1296 LADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL 1355
Query: 1111 GVVAAVLV----VFAVLFGFLFALGIKMFNFQRR 1140
+++ F + F+F I F
Sbjct: 1356 EPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-101
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = 1e-97
Identities = 173/593 (29%), Positives = 286/593 (48%), Gaps = 48/593 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 627
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++ +DEV++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 688 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 806
+CTIHQPS ++FE FD++ LM G+ Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENYNPA 272
Query: 807 TWMLEVSA-------ASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT 859
+ ++V A S+E I + + SD+ R S + L +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGK---AGGLVKDS 327
Query: 860 QFSQSS------WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW--DLGGR 911
+ + W QF A L + S R+P VR T A+L G ++ L +
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK 387
Query: 912 TKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVM 971
+N + G++F + + Q V + + E VF RE +G+Y + LA+ +
Sbjct: 388 GVQNIN-----GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 972 IEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHI 1031
E+P ++ ++ +I Y MIG A F ++F + T +G + + +
Sbjct: 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSM 502
Query: 1032 AAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY---GLVASQFGDMDDKK 1088
A V F + +F GF I IP++++W + ++W Y GL+ +Q+ D+D+ +
Sbjct: 503 ALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIE 559
Query: 1089 MDTGETVKQFLKDY------FDFKHDFLGVVAAVLVVFAVLF--GFLFALGIK 1133
+ T F++ L + LV+ F FAL I+
Sbjct: 560 CTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 6e-73
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 601 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 3e-55
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 627
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
Y Q+DI P +T+ E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 748 CTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 1e-54
Identities = 144/564 (25%), Positives = 258/564 (45%), Gaps = 78/564 (13%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP----KKQ 622
+L + G +PG LT ++G G+G +TL+ +A G +I G IT G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE--VDSETRKMFI----DEVMELV 676
+ Y + D+H P +T+ E+L F+A + +P+ D +R+ + D M
Sbjct: 136 YRGDVV--YNAETDVHFPHLTVGETLDFAARCK-TPQNRPDGVSREEYAKHIADVYMATY 192
Query: 677 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 733
L+ R + VG V G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 734 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 793
+T N +DT T + I+Q S D +E FD++ ++ G +IY GP + YFE +
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFEKM 305
Query: 794 ----PGVQKIKDGYNPATWMLEVSAASQELALG----------IDFTEHYKRSDLYRRNK 839
P Q D ++ +++ ++ +F +++ S Y
Sbjct: 306 GFKCPDRQTTAD------FLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---A 356
Query: 840 ALIEDLSRP-----PPGSKDLYFPTQFSQSS-------------WIQFVACLWKQHWSYW 881
L++++ +K+ Y + ++ S +Q CL +
Sbjct: 357 QLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMK 416
Query: 882 RNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQ 941
NP +T F +AL+ S+F++L K D ++ G++F A+LF SS+
Sbjct: 417 GNPSFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAF---SSLL 470
Query: 942 PIVSV--ERTVFYREKAAGMYAGIPWA--LAQVMIEIPYILVQSVVYGAIVYAMIGFEWT 997
I S+ R + + + +Y P A +A ++ EIP+ +++SVV+ I+Y M+ F T
Sbjct: 471 EIASMYEARPIVEKHRKYALYH--PSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528
Query: 998 AAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIP 1057
A +FF+Y+ ++ L + A+T A + + ++++GF IPRP +
Sbjct: 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSML 588
Query: 1058 IWWRWYYWANPIAWTLYGLVASQF 1081
W +W Y+ NP+A+ L+ ++F
Sbjct: 589 GWSKWIYYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-51
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 868 QFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMF 926
Q A L ++ WR+P R +AL+FG++F + N G +F
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLLF 57
Query: 927 TAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGA 986
++LF + + P+ ER V RE A+ +Y+ + LA++++E+P L+Q++++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 987 IVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVF 1046
IVY M+G + +FF ++ + T L + G+ AL P+ A+ + L +
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1047 SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1081
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 3e-46
Identities = 131/497 (26%), Positives = 242/497 (48%), Gaps = 61/497 (12%)
Query: 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 581
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 641
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701
+T+ E+L+F + LRL + + + + + V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 762 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELAL 821
D + ++ G+ ++ G G + ++YFE++ NPA ++L +LA
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLL-------DLAN 320
Query: 822 GIDFTEHYKRSDLYRRNKALIEDL-SRPPPGSKDLYFPTQFSQ----------------- 863
G+ T+ + ++L+ + P K + F Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 864 -----SSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDL 918
S+W + L ++ ++ + +R F ALL G ++W R D+
Sbjct: 381 DRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR-----DV 435
Query: 919 FNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYIL 978
+ +G +F +F GV + + ER +F +E+A+GMY + +A+++ ++P L
Sbjct: 436 QDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMEL 495
Query: 979 VQSVVYGAIVYAMIGFE 995
+ ++ + Y M G +
Sbjct: 496 ILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-44
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 622
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
R GY Q P +T+ E+L F A L + ++E R I+E++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779
G + + E D + ++ G I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP 221
|
Length = 293 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 4e-44
Identities = 109/469 (23%), Positives = 216/469 (46%), Gaps = 41/469 (8%)
Query: 7 IRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 65
++G+SGG++KR+ E++ P L LF DE ++GLDS + +V L+ + T +
Sbjct: 164 VKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIIC 221
Query: 66 SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSR 125
++ QP+ E ++LFD IIL+++G++ Y G + + FF+ +G CP+ ADF +V +
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV 281
Query: 126 KDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS------------ 173
+ + +++ ++F +G+ + K+
Sbjct: 282 IPGSE-----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334
Query: 174 HRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMH 233
+ A+ T+ Y + KR L ++ R+ LL+K +LIQ A++ ++L +
Sbjct: 335 YNASWWTQFYALLKRSWL--SVLRDPLLLK-------VRLIQTMMTAILIGLIYLGQGLT 385
Query: 234 KDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 292
+ V + GA F +T + F N F I++ A+LPVF ++ + AY + I
Sbjct: 386 QKGVQNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 293 LKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVV 352
++P+ + A++ ++Y+++G S A F L+ V +A++ I+ + +
Sbjct: 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSM 502
Query: 353 ANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ 412
A T G ++ L GGF ++ + I ++KW + S Y ++ N++ + T
Sbjct: 503 ALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTS 562
Query: 413 DSSETL----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLAL 457
++ G +L++ F + +L L L + AL
Sbjct: 563 ANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 189 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 247
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 248 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 306
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 307 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 366
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 367 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 402
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 93
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-37
Identities = 163/645 (25%), Positives = 278/645 (43%), Gaps = 106/645 (16%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQET 624
KL +L SG +P +T L+G +GKTTL+ LAG+ ++G IT +GY +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLR--------LS--------------PEVD- 661
+ S Y QND+H +T+ E+L FSA + LS EVD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 662 --------SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713
+ D ++++ L+ + ++VG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 714 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD++ L+ GQ
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415
Query: 773 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGID-------- 824
+Y GP H++ +FE+ G K + A ++ EV++ + D
Sbjct: 416 IVYQGPRD----HILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI 469
Query: 825 ----FTEHYKRSDLYRRNKALIEDLSRPPPGSKD----LYFPTQFSQSSWIQFVACLWKQ 876
F E +K + L +LS P S+ L F +++S AC W +
Sbjct: 470 SVSEFAERFKS---FHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPKMELLKAC-WDK 524
Query: 877 HWSYW-RNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQD--------LFNAMGSMFT 927
W RN + +A + ++F T+ +D LF+ + +MF
Sbjct: 525 EWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584
Query: 928 AVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAI 987
L ++ VFY+++ + + L ++ IP +++SVV+ I
Sbjct: 585 GFAELA---------LMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635
Query: 988 VYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYG------ 1041
Y IGF A++ FF L+F MA + IA++ T+
Sbjct: 636 TYYSIGFAPEASR-----FFKQLLLVFLI--QQMAAGIF--RLIASVCRTMIIANTGGAL 686
Query: 1042 -LWNVF--SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGD---MDDKKMDTGETV 1095
L VF GFI+P+ IP WW W YW +P+++ L ++ M+ D +
Sbjct: 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRL 746
Query: 1096 KQFLKDYFDFKHD----FLGVVAAVLVVFAVLFGFLFALGIKMFN 1136
+ + FD D ++GV A L+ F +LF LF L + N
Sbjct: 747 GTAVLNIFDVFTDKNWYWIGVGA--LLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-33
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 621
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 740 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 3e-32
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 626
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 627 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ GYC Q D +T+ E L F A L+ P+ K ++ ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 746 VVCTIHQPSIDIFEAF-DELFLMKRG 770
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 625
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 626 ARISGYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
R G QN P F T+ E + F PE + E R ++E +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 622
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
+ R GY Q P T+ E L + AWL+ + S+ K +DEV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 407 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 466
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 467 RAVI 470
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 628 ISGYCEQN---DIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNPLR 682
I GY Q D P +++ + +L + L + + +DE +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T++ H + + E FD + L+ R
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 624
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 625 FARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVEL 678
A+ Y Q+ +T+YE +L + R S E + ++E +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 739 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
+ G TVV +H D+ A D L L+K G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 4e-23
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 622
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 623 ETFAR---ISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
R I G+ Q+ + P +T E++ L L+ E R+ EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER----AEELLE 126
Query: 678 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 733 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 8e-23
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 621
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 742 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 3e-22
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 625
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRG 770
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 9e-22
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 621
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
+ R G Q+ P +T+ E++ F LR P+ + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 740
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 741 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-21
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 51/207 (24%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
LN VS G + AL+G SG+GK+TL+ +AG G +I I G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDG-----EDLTD 66
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
+ V + LF L+ V+E + L
Sbjct: 67 LEDELPPLRRRIGMV-FQDFALFP---HLT--------------VLENIAL--------- 99
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 746
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 747 VCTIHQPSIDIFEAF---DELFLMKRG 770
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 629 SGYCEQNDIHSPF-----VTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 681
GY Q S +T+ + +L + + ++ + ++ +DE +E V + L
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDL 132
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 5e-21
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 627 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR--- 682
+ GY Q+ D ++ E LL E+D+ + + V++ ++L L+
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH 123
Query: 683 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
SL S Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
G+ V+ H D FL K + + +
Sbjct: 175 QGKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 18/222 (8%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 622
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 623 ET----FARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
E + G QN F T+ + + F L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 678 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 738 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
+ G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 66
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 67 LLQPAPETYDLFDDIILLSDGQIVYQG 93
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 614
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 615 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFID 670
++ +K+ + + G+ QN + P +T+ E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 731 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-20
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 628 IS-GYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
G Q+ + + + + + F L L R+ + E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGASGLRE 122
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 744 RTVVCTIH 751
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 4e-20
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 620
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 621 KQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
E + + + QN P++ TI E++L + P+ E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQAG 435
Query: 678 LNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 733 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 23/213 (10%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--K 620
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+ R G Q +T E+L L P+ ++E R +E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 741 DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 770
+ G T++ T H + EA D + ++ G
Sbjct: 172 EEGVTILLTTH----YMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 750
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 751 HQPSIDIFEAFDELFLMKRG 770
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 1 MVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 59
+G +++GISGG+++RV+ +++ P + L +DE ++GLDS T +V+ L Q N
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKV-LILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 60 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 93
++++ QP + + LFD I+LLS G+IVY G
Sbjct: 194 R-IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-19
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 623
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 624 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVEL 678
+ R GY Q+ PF+ +I E++ +PE E + E +E
Sbjct: 544 SLRRQVGYVLQD----PFLFSGSIRENIALG-----NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 679 NPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ GRTV+ H+ S + D + ++ +G
Sbjct: 654 -QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 625
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G Q+ +T +E+L A L V R+ IDE+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 744
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 745 TVVCTIHQPSIDIFEA---FDELFLMKRG 770
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 49/275 (17%)
Query: 494 GSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVD 552
G+ H G +++++L A RP K V SL F V +
Sbjct: 281 GAQYHARADG--------VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA-- 330
Query: 553 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 610
+ L VS PG AL+G SGAGK+TL+++L G T G I
Sbjct: 331 ----------YPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 611 -GNITISGYPKKQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRK 666
+ ++ +++ + Q+ PF+ TI E++ + P+
Sbjct: 381 VNGVPLADAD--ADSWRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE-- 427
Query: 667 MFIDEVMELVELNPLRQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
I E +E L+ +L GL G +GLS Q +RL +A + + ++ +DEP
Sbjct: 428 --IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
T+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 486 TAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-18
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 622
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 623 ------ETFARISGYCEQNDIHSPF--VTIYESLL--------FSAWLRLSPEVDSETRK 666
TF Q F +T+ E+++ L + + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 667 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
+E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 727 RAAAIVMRTVRNTVDTGRTVV 747
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-18
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 599
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 600 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 656
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 657 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAVE 707
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 708 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 768 KRG 770
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-18
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFA 626
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G Q+ P +YE++ F+ L ++ E RK V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK----RVPAALELVGLSHKH 130
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 746 VVCTIHQPSI 755
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA- 626
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 627 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G+ + +T E+L + A L + + ++E+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 746 VVCTIH 751
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-18
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 623
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 624 TFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
R G Q + + T++E++ F LR E ++ +E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 679 NPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 ---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 734 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 9e-18
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 626
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R C Q D H T+ E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 687 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 741 DTGRTVVCTIHQP 753
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-17
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 625
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ Y Q + LFS +R + +
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRG 770
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 624
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
AR+ +Q + +++ ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 743
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 744 RTVVCTIHQPSIDIFEAFDELFLMKRG 770
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 624
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 625 FARISGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMEL 675
RI G Q+ +T+ E++L + + L E D E ++ V L
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GL 135
Query: 676 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
+ R LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 136 ADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 736 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 188 LKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 626
L VS + PG AL+G SGAGK+TL+ L G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 627 RI-SGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMELV 676
R G Q +++ E++L + + L P+ + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 677 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 732 VMRTVRN-TVDTGRTVVCTIHQPSI 755
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 2e-17
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
GY Q D P++T+ +++ L L +E R + EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 688 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 741
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 791
TG+TV+ H DI EA +FL + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-17
Identities = 88/385 (22%), Positives = 179/385 (46%), Gaps = 31/385 (8%)
Query: 1 MVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 59
++G+ IRGISGG++KRV+ EM++ P+L L +DE ++GLD++ +++V L
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSL-LILDEPTSGLDATAAYRLVLTLGSLAQ-K 255
Query: 60 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 119
T V S+ QP+ Y +FD +++LS+G+ ++ G + +F S+GF ADFL
Sbjct: 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315
Query: 120 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQ-KISDELRTPFDKSKSHRAAL 178
++ + Q + +EKP Q ++ + + K + E+ + +
Sbjct: 316 LDLANGVCQTDGVSEREKPN---VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSA 372
Query: 179 TTETYGVGKRELLKANISRELLLMKR-------NSF--VYIFKLIQIAFVAVVYMTLFLR 229
+T+ + R + ++ +L++R SF + +F++I A +A +
Sbjct: 373 STKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMW----- 427
Query: 230 TKMHKD--TVTD--GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 285
H D V D G +F + F+ + F F+ + + + +F K+R + +
Sbjct: 428 --WHSDFRDVQDRLGLLFFISIFWGV----FPSFNSVFVFPQERAIFVKERASGMYTLSS 481
Query: 286 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 345
Y + + +P+ + +++ ++Y++ G G F +LLG ++ L +
Sbjct: 482 YFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGA 541
Query: 346 TGRNMVVANTFGSFALLVLLSLGGF 370
+ A+T + +L + GGF
Sbjct: 542 AIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
I E + P +T E+L A L + IDEV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 748 CTIHQ 752
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 626
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 679
R G Q P +++ E++L S W L E + +D L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 737
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 621
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
R G Q+ P +T+ E++ F L++ ++ K ++E +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 740
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 741 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 787
+ G T V H D EA D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 623
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 624 TFARIS-GYCEQNDIHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
F R GY QN F T+ E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 678 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 737 RNTVDTGRTVVCTIHQPSI 755
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 625
VL +G+S G L G +G+GKTTL+ ++AG G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
A Y + P +T+ E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 746 VVCTIHQPSIDIFEA 760
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFAR--IS 629
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 750 IH 751
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 633
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 634 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693
Q P + + E+L F R D ++ +DE+++L+ L+ L +
Sbjct: 82 QQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 752
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 753 PSIDIFEAF---DELFLMKRG 770
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 42/274 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R QN P +T+YE++ F LR P+ + + R + EV +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 744
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 745 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------QEIYVGPLGRHSCHL-ISYFEAI 793
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 794 PGVQKIKDGYNPATWMLEVSAASQELA----LGI 823
P + +K L + + LGI
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 5e-16
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
G+ Q+ P +T+ +++ F +R ++E R ++E++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 746
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 778
V H + E D + ++ +G E+Y P
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-16
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 625
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 626 ARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 679
AR EQ+ + +T+ + + S W SP + + EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHL- 130
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 -------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 740 VDTGRTVVCTIH 751
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 7e-16
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 624
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 625 -FARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
AR G Q D P T+ E+LL F + LS + R + V L+E L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAKL 128
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 129 ENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 742 TGRTVVCTIH 751
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 622
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 623 ------ETFARISGYCEQNDIHSPFVTIYESLL--------FSAWLRLSPEVDSETRKMF 668
TF Q P +T+ E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR- 127
Query: 669 IDEVMEL---VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ EL V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 128 -ERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 726 ARAAAIVMRTVRNTVDT-GRTVV 747
+ +R D G T++
Sbjct: 182 PEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 9e-16
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 35/240 (14%)
Query: 516 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 575
+ ++EA+AS P V ++D+ K G DK V+ NG+S
Sbjct: 22 KHQGISEAKASIPGSMSTV---------------AIDLAGVSKSYG---DKAVV-NGLSF 62
Query: 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFARIS-GYCE 633
G L+G +GAGK+T+ ++ G + G IT+ G P + AR G
Sbjct: 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVP 120
Query: 634 QNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVM-ELVELNPLRQSLVGLPGV 691
Q D T+ E+LL F + +S TR+ I+ V+ L+E L +S V
Sbjct: 121 QFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFARL-ESKADAR-V 170
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 625
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 626 ARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
AR QN + PF T+ E + S E ++ + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERI-AAQALAATDLSGLAGR 131
Query: 685 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 739 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 770
G V+ +H +++ + D + L+ +G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 743 GRTVVCTIHQP 753
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 626
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 627 RIS-----GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+ G Q +PF +IY+++ + L K +DE +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 681 LRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 732 V 732
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 625
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQS 684
RI GY + P + + + L++ A L+ L E E R+ IDE +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 745 TVVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 775
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 627 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
R+ GY Q S F +T+ E++L A L + + + R+ ++E++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 744 RTVVCTIH 751
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 5e-15
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 623
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
GY Q+D LFS + E +
Sbjct: 73 ELGDHVGYLPQDDE-----------LFS------------------GSIAENI------- 96
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 744 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 5e-15
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 625
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 626 ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
+ Q+ + S P +TI E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
GY Q D P++T+ +++ LR + ++ R E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFE 124
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 741
P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 742 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 774
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSL 685
R G+ Q+ +T+++++ F ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 744
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 778
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-14
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 627 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
R Q+ S P +T+ + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 622
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFS------AWLRLSPEVDSETR-KMFIDEVMEL 675
AR Q HS SL F + +P S + +
Sbjct: 72 AELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 676 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 729
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 730 AIVMRTVRN-TVDTGRTVVCTIH 751
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 32/214 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 627 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
+ G Q F+ TI E++ R + + + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---RPNATDEE------VIEAAKEAGAHDFIM 123
Query: 684 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ GRT + H+ S I A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 617
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 618 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSP 658
YP I G VT L +A R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 659 EVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716
+ E K + E EL+ L+ L + + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARIS 629
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
GY Q +++Y++L+ A L++ ++ +E R+ +E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 750 IH--QPSIDIFE 759
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 625
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 626 ARISGYCEQNDIHSPF--VTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVE 677
AR G + + F +T+ E+L S + L + +E R+ IDE++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 678 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 630 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
GY E+ ++ P +T+ + L + A L+ P+ + + + + +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 689 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL-------GR-----HSCHLISYFEAIP 794
+ + H+ + E D L ++K+ GQ + G + G+ S + IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 795 GVQKIK 800
G+ KI
Sbjct: 242 GILKIT 247
|
Length = 300 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 7e-14
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFA 626
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 627 RIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
R++ G Q D P T+ E+LL F + +S + + I ++E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARL----ES 127
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 745 TVVCTIH 751
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 553 MPEEMKVQ--GV---LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 605
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 606 GGYI---TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 662
G I +I + E R+ G Q +T++E++ F LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 663 ETRKMFIDEVMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIF 716
E K+ + ELV + LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 717 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 752
+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 623
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
++S ++N I+S T+ + + F + + E R++ I+E +E + L L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 742
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 743 GRTVVCTIHQPSIDIFEA---FDELFLMKRG 770
G+T+V +H DI A D + +K G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 628 ISGYCEQND-----IH-----SPFVTIYESLLFSAWL-RLSPEVDSETRKMFID--EVME 674
S + +H P +++ E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 675 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 734 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 615
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 616 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFI 669
G K+ F R Q+ S P T+ L + I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----I 121
Query: 670 DEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
+ R Y P ++ E+L F W + I++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 743 GRTVVCTIHQP 753
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 65
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 66 SLLQPAPETYDLFDDIILL-SDGQIVYQG 93
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 624
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 625 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 680
R GY + P +T+ E+LL A+ R + + ++ V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 741 DTGRTVV 747
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 628 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
S G Q+ + F ++Y+ + F A PE + R +D ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 744
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ---P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 745 TVVCTIHQPSIDIFEAF-DELFLMKRG 770
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 619
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME----- 674
R G Q E++LF+ +R + M ++ V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 675 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 730 AIVMRTVRNTVDTGRTVVCTIHQPS 754
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA-RI 628
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
G+ Q+ +T+ +++ F +R + K ++E++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 747
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 748 CTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 778
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 36/174 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 627 RISGYCEQNDIHSPFVTIYESL---------------LFSAWL-RLSPEVDSETRKMFID 670
R +G + P T++E+L +F++ RLS E I+
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IE 125
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
++ +R +SGG K+R++ ++ L +DE ++GLD + +I LR+ T
Sbjct: 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190
Query: 64 VIS--LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC--PKRKGVADFL 119
++S +L+ E +L D +I+L+DG+I+ +G E + E F G P+R +A+ L
Sbjct: 191 LLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELL 247
Query: 120 QEVTSRKDQRQYWAHKEK 137
+ + K + + E
Sbjct: 248 EGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 627 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVELNPL 681
R+ GY Q S F +T+ ++++ A L + E D + RK +D ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHL 132
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
R S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 742 TGRTVVCTIH 751
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVG 687
G QN+ P++ + +++ F LR ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 625
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 626 ARISGYCEQNDIHSPFVTIYE------SLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
AR Q+ + +T+ E S S W RLS E +++ ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 740 VDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 771
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
I E ++ +T E+L L P DS IDEV+ +V+L G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 2e-12
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 631
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 632 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691
C Q D +T E L A LR P +E + + ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 620
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 621 KQETF---ARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 676
+ +T I +Q + PF ++IYE++++ LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 677 ELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+SL G GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 726 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 754
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 625
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVELNPLRQS 684
RI Q + + +S A + L P + DE+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 743
P V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 ----P-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 744 RTVVCTIH 751
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--- 622
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
ETF + GY Q D+ T+ E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 683 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 734 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775
++ G TVV H+PS + D++ +++ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 584 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSP 640
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM---ELVELNPLRQSLVGLPGVSGLSTE 697
+T+Y+++ + R + + E + + I E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 757
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 758 FEAFDELFLMKRG 770
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 627 R--ISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQ 683
R ++ + + + I + FS LR L TR+ +DE + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 744 RTVVCTIHQPSID-IFEAFDELFLMKRG 770
V+ + H ID I+E D ++++++G
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK 621
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 622 ---QETFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
++ R G Q ND TI ++ + EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 674 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 734 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 623 ---ETFARISGYCEQNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMEL 675
G Q P TI E++ + EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 676 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 735 TVRNTVDTGRTVVCTIH 751
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 638
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 639 SPFVTIYESLLFSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692
F + E ++ WLR + + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 560 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 620 -------KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 672
+ + A+ G+ Q+ + P + E++ A LR E ++R +
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 673 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 624
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 625 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 742
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 6e-12
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 626
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R QN P + + +++ F + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 744
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRG 770
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-12
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 535 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 594
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFA---RISGYCEQNDIHSPF-VTIYESLLF 650
TL+ +L +G I I G + + + G Q+ + F TI E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710
E++ + E + L ++VG GV LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 634
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 635 NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVS 692
+ + +SL L+L E+ + +D + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 751
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 752 QPSIDIFEAFDELFLMKRGGQEIYVGPL 779
DI D + L+ + GQ ++ G L
Sbjct: 216 IFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR 682
R GY Q P +T+ E++ P+ D E K DE+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 739
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 740 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 778
G+T+V H DI EA D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-E 623
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
R QN P +T++E++ F LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQET- 624
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 625 --FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
R GY Q P +T+ E++ + +L + E + DE++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLL-KWPKEKIRERADELLALVGLDP-- 125
Query: 683 QSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 735
P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 126 AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 736 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
R + G+T+V H DI EAF D + +MK G
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 594 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTIYESLL 649
+TL+ ++ G +G I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 709
F + +E +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 710 ANPSIIFMDEPTS 722
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFA 626
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 627 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL 681
R GY + H+P +Y + +L+ + + K ++E++ELV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI 628
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 629 SGYCEQNDIHSPFV----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
+ ++ ++ ++ ++ E++L A L +P + + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFS--WFTREQKQRAL 134
Query: 679 NPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 734 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFA 626
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G Q+ P T+YE++ +R E + + R + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 746 VVCTIHQPSI 755
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 625
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 626 ARISGYCEQNDIHSPFVTIYESLL--FSAWLRLS-PEVDSETRKMFIDEV-MELVELNPL 681
+ + + F+ + LL F+A ++ P + + E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 738
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 739 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 624
+L G+S A + G ++G SG+GK+TL +L G +G++ + G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF----IDEVMELVELNP 680
R GY Q D+ TI E++ R E D E K+ + V EL+ P
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPE--KVIEAARLAGVHELILRLP 459
Query: 681 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
+ +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 460 QGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 740 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G TVV H+PS + D++ +++ G
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 619
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 620 KKQETFA---RISGYCEQ--NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
K + R+ G Q N PF +IY+++ + LRL D E +DE++
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 674 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 724 LD 725
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 622
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 623 -ETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
+ G Q N + S T++E++ F L L+ V K V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QRVAELLEL- 128
Query: 680 PLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 733
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 734 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 770
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 618 YP---KKQETFARIS----GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 670
P ++ A + G+ Q+ P +T E++ LR DS
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----- 126
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 726
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 -AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 727 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G Q+ P T+YE++ LR+ + E R+ V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 746 VVCTIH 751
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 579 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 632
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 633 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692
Q P +++ +L + R++ + V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISG----Y 618
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 619 PKKQETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVM 673
KK R + G QN + +P T+ E + F L L + + E R V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKR------VK 119
Query: 674 ELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
E ++ VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 120 EALKA-------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 770
A+ +M+ + + G T++ + H +D+ + D++++M G
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-11
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 627
LL VS PG L+G +GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 628 ISGYCEQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ GY Q P T+ + ++ F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 686 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 727 RA 728
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQ 622
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 623 ETFARI----SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
+ R G+ QN P T+ E+++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 679 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 734 RTVRNTVDTGRTVVCTIHQPS 754
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSL 685
G Q+ P +T+ +++ + + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 686 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 584 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 637
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697
SP T+ + + F ++ +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 756
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 757 IFEAFDELFLMKRGG-------QEIYVGP 778
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 622
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
R G Q+ + P +++ ++LLF+ L + R+ + +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 622
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 623 ETFARISG----YCEQNDIHS--PFVTI----YESLLFSAWLRLSPEVDSETRKMFIDEV 672
+ +I G Q+ + S P +TI E L ++K +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 673 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+EL+E LVG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 725 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYIT-GNITISGYPK 620
+ VS PG + ++G SG+GK+T LM +L GR T G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 621 KQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 676
++ + Q+ + S P +TI + A LRL + + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREA-LRLHGKGSRAEARKRAVELLEQV 140
Query: 677 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 736 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 624
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 625 FARISGYCEQND--------IHSPFV-----TIYESLLFSAWLRLSPEVD-SETRKMFID 670
RI D +H F+ T+ E+++ +D + R I
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 671 EVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
E+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 729 AAIVMRTVRNTVDTGRTVV 747
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 585 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 640
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700
+T+Y+++ F LR P+ + + R + EV EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 701 RLTIAVELVANPSIIFMDEPTSGLDAR 727
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
G QN+ P+ + +++ F L+L+ V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 745
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 746 VVCTIHQPSIDIFEAF---DELFLMKRG 770
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L + G A++G SG+GK+TL+ +LAG G+IT++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQS 684
EQ + V LFS LR +P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 685 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 738 NTVDTGRTVVCTIH 751
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 624
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 625 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 680
R Y + P +T+ E+LL L D E ++ ++EV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 741 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
G + + Q + A D ++++ G
Sbjct: 184 KEGGMTILLVEQ---NARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 557 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616
M++ V E L +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
G P + AR Y Q +P W L+ +TR +++V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 674 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 727
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ + R + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 585 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 641
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701
+T+ E++ F +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 760
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 761 F---DELFLMKRG-------GQEIYVGPLGRHSCHLI---SYFEAI 793
D + +M++G +EIY P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 627 RISG---YCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVM------- 673
++ +Q DI T+ ++L + W P+ V + D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 674 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 733 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 770
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 621
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 622 QETFARIS-GYCEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 674
+ R G+ QN S I E L+ + R + +E + +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 735 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
+R V + G VV H ++ A D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 516 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 575
+ + P ++L + FDE E+ LN +S
Sbjct: 3 DYFMKKKLKVPNPLSDDIILRVKNLYCVFDE-----KQENELVA----------LNNISY 47
Query: 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARISGYCEQ 634
F + ++G SG+GK+TL+ G Y G I + Y ++ +
Sbjct: 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYS 105
Query: 635 NDIHS--------PFV-----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 675
I + V TI + ++F + +++ F M L
Sbjct: 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165
Query: 676 ----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
+E +P GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 166 DDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 732 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+M+ + + +TV H + E DE+ +M +G
Sbjct: 215 MMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 572 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETF 625
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 626 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR- 682
A R G Q P ++++++++ A L+L+ D D +ME+ E LR
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-RSLRG 131
Query: 683 -------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--M 733
+ + P +GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 132 AALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 734 RTVRNTVDTGRTVVCTIHQPS 754
T V T V +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 626
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 627 RIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
R Y Q P +T+ E+LL R I + E+ EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 684 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 743 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 771
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-- 621
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 622 -QETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
+ R G QN + S +I+E++ A L+ DE E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTL-----------DEAWEAARMA 565
Query: 680 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 731 IVM 733
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 624
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 625 FARISGYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
R++ + + F + E R +++ ++ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 743 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 771
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 558 KVQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---G 611
K + LNG+S G ++G +GAGK+TL++ +AG T G I
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68
Query: 612 NITISGYPKKQETFARI-----SGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVD 661
++T K+ AR+ +G P +TI E+L A R LS ++
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 662 SETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
R F + + L L +GL LS QR+ L++ + + P I+ +DE
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 721 TSGLDARAAAIVM 733
T+ LD + A VM
Sbjct: 176 TAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPE------------------VDSETRKMFIDE 671
+ + IY+ L L PE V+ R++ E
Sbjct: 75 -----AALAAGVAIIYQEL------HLVPEMTVAENLYLGQLPHKGGIVN---RRLLNYE 120
Query: 672 VMEL-----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 727 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
R + R +R GR ++ H+ +IF D + + K G
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 3e-10
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 627 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR 682
Y Q P++ TI E++LF D E ++V++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 683 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 735
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
++ AR Y +++ E+L F + E ++E + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 743 GRTVVCTIHQP 753
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 624 TFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
T A R G Q D+ T+ E++ + P E EV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 681 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 732 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
V + + RT H+ S I A D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMEL 675
R G V + E++LFS +R +P E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFE-------HVIHA 566
Query: 676 VELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+L + LP G LS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 726 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ A++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 626 YESEALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 624
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
FAR Y Q + +T+ E + W + R+ ++E + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 741
LV LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
G TV+ +H I++ + + + RGG+ I G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 34/159 (21%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI----------TGNITISGYPKKQETFA 626
G+ TAL G SG+GKT+L++++AG R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
RI GY Q+ P T+ +L + W ++ + D+++ L+ + L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 619
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 620 KKQETFA---RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 675
KK + R+ G Q +PF ++IY+++ + RL D K +DE++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 676 VELNPLRQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+SL L V GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 725 DARAAA 730
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 47/216 (21%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 629 SGYCEQNDIHSPFVTIYESL---LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
DI + E +F A+ PE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 746 VVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 775
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG 630
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 631 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI------------DEVMELVEL 678
+ + + + ++++ +R+S + R M I + +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 739 TV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
V D G V+ H + A L +M++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 633
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 634 QNDIHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 687
+N++ +T+ ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 744
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRG 770
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFA 626
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 627 RISGYC--EQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
+ G E ++ T+ + +L F A + + E + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 740
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 49/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 521 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 575
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 635
G A++G +GAGK+TL+ +LAG G ++G + + G K GY +Q+
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-------IGYFDQH 393
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL--VGLPG--- 690
+T + E + +R L G G
Sbjct: 394 --------------RDELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 691 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 623
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 624 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
+ G Q PF +IYE++++ LRL+ D K +DE +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 682 RQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (143), Expect = 3e-09
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 632
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 633 EQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVGLP 689
Q P ++E + + P+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP 142
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 750 IHQPSIDIFEAFDELFLMKRG 770
H D+ + D ++L+++G
Sbjct: 201 THLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 624 TF-------ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----ID 670
AR + Q P V+ E L + R S + E + +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLK 124
Query: 671 EVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
+ L+ ++ L +S+ G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 729 AAIVMRTVRNTVDTGRTVVCTIHQPSI 755
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-09
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ--- 622
L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-L 681
E++ + + QN P T+ +++L P+ E + + +E ++ L
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFL 468
Query: 682 RQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ +
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528
Query: 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
N +T + HQ ++ +D++++M+ G
Sbjct: 529 -NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 624
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
R GY Q D + T+ +++ A P D E I EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 685 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 738 NTVDTGRTVVCTIHQPSI 755
+ G+T+V H+ S+
Sbjct: 646 RWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 562 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 615
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 616 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFID 670
+G P AR+ Q + + E +L + R + + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 721
+ + L L V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 722 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 755
+ LD ++ TVR V I H P++
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617
KV G K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 618 Y------PKKQETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 669
K+ R G Q N + S T++E++ + P+ + E R +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEER---V 121
Query: 670 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
E++ELV L + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 730 AIVMRTVRNT-VDTGRTVVCTIHQ 752
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 630 ---GYCEQNDIHSPFV-TIYESLLFSAW-LRLSP-EVDSETRKMFIDEVMELVELNPLRQ 683
G Q+ F T+++ + F + L EV+ E ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 744 RTVVCTIH 751
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 623 ETFARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELV----- 676
IS Y E +HS + E +LF+ L+ + ++ + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 677 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 732 VMRTVRNTVDTGRTVVCTIHQ 752
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQET 624
+LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 625 FARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
R G Q ND TI ++ + + EV + I + ++ L
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLP 386
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 740 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 782
V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 625
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 626 ARISGYCEQNDIHSPFVTI-YESLLFSAWLR--LSPE---VDSETRKMFIDEVMELVELN 679
D+ S I + +LFS +R L P D E + + +E V L
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLK 119
Query: 680 PLRQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 734 RTVRNTVDTGRTVVCTIH 751
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 622
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPL 681
+ G Q P +T+ E++ + ++ + ++E R +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK--- 122
Query: 682 RQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 737 RNTVDTGRTVVCTIHQ 752
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 629 SG--YCEQNDIHS--------------------PFVTIYESLLFSAWLRLSPEVDSETRK 666
SG Y + DI P ++I+E++ L+L+ V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 667 MF--IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 725 DARAAA 730
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 621
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
+E + G Q P +TI ++ L + RK ++ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 682 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 737 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV----MELVELNPLRQ 683
G Q P +T+ E++ L+P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 684 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 739 TVDTGRTVVCTIHQ 752
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 37/167 (22%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFARIS-G 630
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 631 YCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR------- 682
Q +PF ++IYE++ + LR D K +DEV+E LR
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKD----KKVLDEVVE----RSLRGAALWDE 134
Query: 683 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
+ + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 135 VKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 553 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 610
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 611 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 668
G +S K E + + YC Q T+ ++L+F +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 669 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
+D L+ L S++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 729 A----AIVMRTVRNTVDTGRTVVCTIHQP 753
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNITISG---YPKKQETF 625
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 626 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
A R G Q P ++I ++++ A L+L+ K +DE++E +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLN----GVRNKKDLDELVE--------K 127
Query: 684 SLVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
SL G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 128 SLRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 541 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
++ FD V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 599 VLAG--RKTGGYIT-GNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSAW 653
+ + T G +T +ITI+ K + + G Q ES LF
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 654 LRLSPEVDSETRKMFIDEVME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708
+ + KM +DEV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLM 767
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +M
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 768 KRG 770
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFAR 627
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 628 ISG----YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
G Y E + I +T+ E+L R T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 684 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 732
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 733 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 4e-08
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 629 SGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
C ++ I +P++T+ E+ L+ ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 746 VVCTIHQ 752
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 621
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 622 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
R G Q +PF +IYE++ + P + E K +D ++E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE------ 127
Query: 681 LRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
+SL G LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 730 A 730
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 619
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 620 KKQ---ETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETR-KMFIDEVME 674
+ E AR+ G Q +PF +IYE++ + P + R K +DE++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 675 LVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
LR++ GL PG +GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 725 DARAAAIV 732
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 36/197 (18%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 635
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 636 DIHS-----PFVTIYESLL-----FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
H P +++ +++ WLR D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 746 VVCTIHQPSIDIFEAFD 762
++ T H D+ +A
Sbjct: 166 ILMTTH----DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 622
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 623 ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
F R Q+ + P +T+ + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 619
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 620 KKQET--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 676
K + + G Q +PF +I+E++ + LR++ D+ + ++E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 677 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 732 V 732
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-08
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 628 ISGYCEQNDI---HSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDE----------VM 673
S +N I H + + S++ + WL P T+ MF+D+
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 674 EL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
EL ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 121 ELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 733 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 174 FTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 624
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
F QN P++T+ E++ A R+ P++ R+ ++E + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 743
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 744 RTVVCTIHQPSIDIFEAFDELFL-----MKRGGQEIYVG 777
TV+ H D+ EA L L M G +G
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 621
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
E + G+ Q P T E++ + + +R + E++ V L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-08
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 624
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 625 FARISGYCEQ 634
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 6 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 65 ISLLQPAPETYDLFDDIILLSDGQ 88
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 69/225 (30%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L + + VL + GVSG+GK+TL+
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-------------------------------- 38
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSL 685
+Y S A L S + +FID++ L+++ L Q L
Sbjct: 39 -----------NEGLYASG--KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 744 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP-LGRHSCHLI 787
TV+ H + + I GP G+ ++
Sbjct: 140 NTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVV 173
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 630 GYCEQNDIHSPFVTI-YESLLFSAWLR----------LSPEVDSETRKMFIDEVMELVEL 678
+ ++ + + + +LF+A + EV++ R E + L
Sbjct: 407 --LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 739 TVDTGRTVVCTIHQ 752
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 60/188 (31%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 623 ETFARISGYCEQNDIHS-------------PF-VTIYESLLFSAWLRLSPEVDSETRKMF 668
+ Y D++ PF ++IY+++ + P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 669 IDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717
+DE++E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 718 DEPTSGLD 725
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFARIS- 629
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL---NPLRQS 684
G Q P ++IY+++ F P + K +D ++E L + + ++
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
L PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 140 L-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 541 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 599 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658
+G ITI+GY ET G + SL+F P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----P 94
Query: 659 EVDSETRKMFIDEVMELVELNPLR----------QSLVGLPGVSGLSTE----------- 697
E ++F + V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 698 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 757 IFEAFDELFLMKRG 770
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNITISGYPKKQET 624
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 625 FARISGYCEQNDIHS-----PFVTIYESLLF-----SAWLRLSPEVDSETRKMFIDEVME 674
A I IH P +TI E++ + + R+ + +KM+ +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 675 LVELNPLRQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
L LN S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 733 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774
R +R GR +V H+ +IFE D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 624
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 625 F-ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 740
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLIS 788
G ++ H + + DE+ +M G +EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 628 IS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
+ G QN P FV T+ + + F E + +E++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 680 PLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 733 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 770
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 621
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 622 QETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
++ F R Q+ I + P T+ E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 582 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 633
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 634 QNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--------EL-NPLRQ 683
Q +PF ++IY+++ + P + K +D+++E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 624
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
+ Q+ P T+ E++ F ++ P+ + E R + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 738
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 739 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 778
+T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 GISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
+SGG+K+RV + P L L +DE + LD + Q++ L+Q I N VI +
Sbjct: 131 QLSGGEKQRVALARALAAQPEL-LLLDEPFSALDRALRLQLLPELKQ-IKKNLNIPVIFV 188
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQG 93
E L D I+++ DG++ Y G
Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 560 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 612
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 613 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSE 663
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 664 TRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 723 GLD 725
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 10 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68
+SGGQK+RV G + V P + + +DE ++ LD + QI+ +R+ + + VIS+
Sbjct: 144 LSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISIT 201
Query: 69 QPAPETYDLFDDIILLSDGQIVYQG-PRELV--LEFFASMGFRCP---------KRKGVA 116
E ++ D +++L DG+++ QG P E+ +E +G P K KG++
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS 260
Query: 117 DFLQEVTSRKDQRQY 131
QE+ + + QY
Sbjct: 261 -VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 621
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELN 679
+R+S + + + +LFS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 680 PLRQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 732 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 547 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 606
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 607 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSP 658
G I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 770
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARIS-GYC 632
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 633 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692
Q++I +T+ E +LF A L+ E ++ ++ ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 749
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 750 IHQ 752
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISG 630
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 631 -YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
+ + N +P + I + LRL+ +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 6e-07
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 754 SIDIFEAFDELFLMKRG 770
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 633
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 634 QNDIHSPFVTIYESLLF--SAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 687
+N++ + +T+ +++ S L+L+ E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 743
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 744 RTVVCTIHQPS 754
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 52/210 (24%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KK 621
E + +L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
++ + + Q P+ LF LR
Sbjct: 70 EKALSSLISVLNQ----RPY-------LFDTTLR-------------------------- 92
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 --NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 742 TGRTVV-CTIHQPSIDIFEAFDELFLMKRG 770
+T++ T H I E D++ ++ G
Sbjct: 146 KDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 636
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 637 IHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLPG 690
+T+ ++ L L+L+ E V +++ I + ++ LP
Sbjct: 82 F--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPE 127
Query: 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 749
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 750 IHQPS 754
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 625
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G+ Q+ +T+++++ F L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 620
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 621 KQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVEL 678
E F R G Q +PF ++I +++L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLW 150
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ ++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 151 DAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 739 TVDTGRTVVCT 749
D ++ T
Sbjct: 209 LADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 623 ETF-----ARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVME-- 674
F R G Q +PF+ +IY+++ + P++ K +DE++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 675 LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 732 VMRTVRNTVDTGRTVVCT 749
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 8e-07
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD--------SE-TRKMFIDEVMELVELNP 680
E+ I I++ L L E+ +E T +D +
Sbjct: 78 D-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 681 LRQSL-----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
L L P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 127 LLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 736 VRN 738
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 23/101 (22%)
Query: 11 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 65
SGG ++RV M+ ALA L DE +T LD + QI++ L++ + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALI 208
Query: 66 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 100
+ T+DL D + ++ G+IV +GP E + +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 551 VDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 603
V++PEE LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 604 KTGGYITGNI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----WLRLSP 658
+ N+ P E R G ++ + F +YE L + ++ L P
Sbjct: 124 -----LKPNLGRYEDPPSWDEVIKRFRG----TELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 659 E-VDSETRKM--------FIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVE 707
+ V + ++ DEV+E + L + R VS LS + +R+ IA
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQRVAIAAA 227
Query: 708 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 627
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 628 ISGYCEQNDIHSPFVTIYESL-LFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPL 681
I+ Y E + + + + LFSA LR +P E + EV++ V L L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA----LIEVLQQVGLEKL 458
Query: 682 RQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+TV+ H+ + E FD + +M G
Sbjct: 519 A-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 617
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 618 ----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 661
YP I G Q + + + R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 662 SETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
+ ++E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 536 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 595
P EPH +V+ + V+ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 596 LMDVLAGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTIYESL 648
L+ L G G + GN+ I+G P Q A I+ E H P + + +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 649 LFSAWLRLSPEVDSETRKMFIDEVMEL------VELNPLRQSLVGLPGVSGLSTEQRKRL 702
S + S KM ID EL ++ ++ + LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 703 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 543 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 603 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF----SAWLRLSP 658
++ +G I I G I + + V ++ LF +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 659 E--VDSETRKMF-IDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714
D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 673 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 733 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 770
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 628 ISGYCEQNDIHSPFV--TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
+ G QN + FV T+ E L F L L P E RK +D + + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRG 770
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 585 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 637
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697
P +T+ E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 610
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETF 625
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-S 684
Q P +++ E++ L E+ +M + M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRELQ 129
Query: 685 LVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774
V C ++ +A + + R GQ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 581 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETFA--RISGYC 632
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 633 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--------NPLRQS 684
Q P +TIY+++ ++L+ V S+ E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 745 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 778
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISG---YPKKQ 622
L+G+S F LTAL+G SG GK+T + L R ITG I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 623 ETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+ + G Q PF ++Y+++ + L+++ D E ID+ +E
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKE----LIDQRVE----ES 127
Query: 681 LRQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
L+Q+ + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 734 RTV 736
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 623
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 624 TFARISGYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 683 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 736 VRNTVDTGRTVVCTIHQP 753
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 630 GYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSL 685
Q + S V ++ + + A+ R +E + + V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 742
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 637
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 638 HSPFVTIYESLLFSA----WLRLSPE-VDSETRKM--------FIDEVMELVELNPLRQS 684
+ F + E + ++ L P+ V + ++ +DE+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 745 TVVCTIHQPSI 755
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 582 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFARISGY 631
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 632 CEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP- 689
++ + PF +IY+++ + P++ K +DE++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 690 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 619
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 620 KKQE--TFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKM 667
KK + R G Q +PF +IYE++++ LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 668 FI-DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
+ DEV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 727 RAAAIV 732
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-- 639
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 640 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693
P +T++E++ F ++ +P + R M E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---EALRMVQLEEFAQR-----KPHQ 144
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 622
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 623 ------ETFARISGYCEQNDIHSPFVTIYESLL----------FSAWLRLSP-----EVD 661
TF + + E +T+ E+LL + L +P E +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 662 SETRKMFIDEVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
+ R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 721 TSGLD 725
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 623 ETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSETRKMFIDEVM 673
R + F Y SL + LR+ P++ + R + E +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 674 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 621
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 622 QETFARIS---GYCEQN-DIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 675
+E I G QN D + F+ T+ + + F + V + K ID++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 676 VELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 732
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 733 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 777
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 624
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQ 683
R G Q P ++IY++++ A +L+ V+ ++ ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 622
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 623 ETFARI-SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
E R +G Q P +T E+++F LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 742 TGRTVVCTIHQ 752
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ-- 622
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
E + Q+ P T+ E++ F ++ P + E R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 738
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 739 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------ 681
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-- 637
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 638 --HS----PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691
S P +++ E++ + L++ V E RK + E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 746
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 747 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 778
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 31/261 (11%), Positives = 76/261 (29%), Gaps = 27/261 (10%)
Query: 883 NPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQP 942
+ LLFG G + + + + V+ + V +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 943 IVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMI---GFEWTAA 999
++ R + + + + + +PY++V S++ G ++ + G + +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1000 KFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIW 1059
+ + L +++ A+ V L SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1060 WRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVV 1119
+ + NP+ + + L G + L++
Sbjct: 228 LQGISYINPLTYAIDALRYVYLG------------------------GWRNDGIWISLLI 263
Query: 1120 FAVLFGFLFALGIKMFNFQRR 1140
+ LG+ + +R+
Sbjct: 264 LLLFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 11 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI---- 65
SGGQK+RV ++ P + L +DE + GLD + +++ L++ + G +I
Sbjct: 136 SGGQKQRVAIAGVLAMDPDI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTH 192
Query: 66 --SLLQPAPETYDLFDDIILLSDGQ 88
LL +L D +I+L DG+
Sbjct: 193 DLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 512 QSSSQSLSLAEAEASR-----PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 566
++ S S A+R P++K + +PH + + +Y + KV + K
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSK 65
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGY 618
V TA++G SG GK+T + + + TG + I G
Sbjct: 66 YV--------------TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 619 PKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-------RLSPEVDSETRKMFI- 669
+ + G Q +PF +I++++ + L +L V+ RK +
Sbjct: 112 FTDEVLLRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169
Query: 670 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
DEV + ++ N L GLS Q++RL +A L P I+ +DEPTS LD +A
Sbjct: 170 DEVSDRLDKNAL-----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 730 A 730
A
Sbjct: 219 A 219
|
Length = 286 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 580 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFA 626
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 627 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
RI +Q + PF +IYE++ F A R++ + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 686 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIT 614
KV + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 615 ISGYPKKQETFARIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 671
++ + T AR G Q N + S T++ ++ L +P+ + + + + E
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSR--TVFGNVALPLELDNTPKDEIKRK---VTE 123
Query: 672 VMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
++ LV L S P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLALVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 23/110 (20%)
Query: 3 GDEMI-----RGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNI 56
G +M R +SGGQ++ V ++ P + L +DE ++ +D+ + + + L++ +
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRSEERFKDRLKRWL 648
Query: 57 HINSGTAVI------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
+G ++ SLL DL D II++ +G+IV GP++ VLE
Sbjct: 649 ---AGKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 557 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616
M++ V L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
G P + AR Y Q + +++ L L + +E ++EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 674 ELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLD 725
E + L +G V+ LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 726 ARAAAIVMRTVRNTVDTGRTVVCTIH 751
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 38/240 (15%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS--- 616
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 617 GYPKKQETFARISGYC------EQNDIHSPFVTIYESLL----------FSAW------- 653
GY ++ C E+ D + + + F+ +
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 654 --LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 621
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 622 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKMFI-D 670
R G Q +PF +I+E++ + LR L+ V+ R + D
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
EV + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKD-----RLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 1 MVG-----DEMIRGISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTF 46
VG D +SGG KKRV ALA L DE + GLD +
Sbjct: 123 AVGLRGAEDLYPAELSGGMKKRV---------ALARALALDPELLLYDEPTAGLDPIASG 173
Query: 47 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 104
I + L +++ G I + + + D I +L DG+IV +G E E AS
Sbjct: 174 VIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 29/229 (12%)
Query: 534 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 593
VL T EVV V+ + + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 594 TTLMDVLAG-RKTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTI 644
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 645 YESLLFSAWLRLSPEVDSETRKMFIDE------VMELVELNPLRQSLVGLPGVSGLSTEQ 698
E+L+ P R F+D EL+E +R P LS
Sbjct: 355 AENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGN 408
Query: 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 9 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 68 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 101
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 587 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKR 701
+ E++ F L+L+ E +++V E+++L L R+ LS QR+R
Sbjct: 92 VAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
+ G+ F +TAL+G SG+GK+T + L R N TI AR++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 630 G--YCEQNDIHSPFVTIYE-----SLLFSAWLRLSP-------------EVDSETRKMFI 669
G DI+ + +YE ++F R +P E K +
Sbjct: 80 GQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDKKVL 136
Query: 670 DEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
DE++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 719 EPTSGLD 725
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 627 RISGYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 638
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 639 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698
++ E+L F L ++M + +V L +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQM-PGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 583 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 639
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 640 PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------- 689
P++ +I E+LL A + DE+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 690 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 69/241 (28%)
Query: 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 597
EP E V V + G + D VS R G + + G+ GAG+T L
Sbjct: 253 EPPEEGIGEPVLEV---RNLSGGGKVRD-------VSFTVRAGEILGIAGLVGAGRTELA 302
Query: 598 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---------FVT----- 643
L G + +G I + G + I SP +V
Sbjct: 303 RALFGAR--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 644 --------IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695
I E++ ++ R S R+ ID E + L + S
Sbjct: 346 EGLVLDMSIAENITLASLRRFS-------RRGLIDRRKERALAERYIRRL----RIKTPS 394
Query: 696 TEQR---------KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
EQ +++ +A L +P ++ +DEPT G+D A A + R +R G+ +
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 747 V 747
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TG----NITISGYPK 620
++ VS + G + ++G SGAGKTTL ++AG T G + G ++T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+ R G Q P T+ ++L + L L E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 741 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 637
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 638 HSPFV---TIYESLLFSAWLRLSPEVDSETRKMFID--EVMELVELNPL-RQSLVGLPGV 691
P++ T+ E++ F SP + + K D + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 749
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 750 IHQ 752
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 634
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 635 NDIHSPFVTIYESL---------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
N +T+ E + LF+ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/111 (19%), Positives = 44/111 (39%)
Query: 974 IPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAA 1033
+ +LV + I+ + G + L + G + +L N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1034 IVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1084
+V ++ L + F G + P P +P + +W + P + GL+ +GD+
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFAR 627
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 628 ISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQS 684
G Q H F T+ + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTG 743
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196
Query: 744 RTVVCTIHQPSIDIFEAFDELFLMKRGG 771
T V H D D++ +M +G
Sbjct: 197 LTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG--YITGNITISGYPKKQET 624
L+ VS G A++G +G+GKTT ++ L TG +I + K ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE------KNKKK 76
Query: 625 FARISGYCEQNDIHSPFV---------------------------TIYESLLFSAWLRLS 657
E+ I TI + ++F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 658 PEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 715
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFL 187
Query: 716 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
DEPT+GLD + ++ N G+T++ H
Sbjct: 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 628 ISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
+ + +H + E +LFS +R + +E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 687 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 738 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 11 SGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLL 68
SGGQ++RV +M P L L DE LD +++ Q+++ L++ I+ G T ++SL
Sbjct: 146 SGGQQQRVAIARALMQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLH 203
Query: 69 QPAPETYDL----FDDIILLSDGQIVYQGPRE 96
Q DL D I+ L DG+IV+ GP
Sbjct: 204 QV-----DLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 23/94 (24%)
Query: 11 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 65
SGGQ++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 147 SGGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLL 200
Query: 66 ------SLLQPAPETYDLFDDIILLSDGQIVYQG 93
++ + D + ++ G+IV +G
Sbjct: 201 FITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 611
+ DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 612 NI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 670
+I I ++E G Q P ++IY+++ + L+ + K ++
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 731 IVMRTVRNTVDTGRTVVCTIHQP 753
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 638
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 639 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 699 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 750
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 751 HQPSI----DIFEAFDELFLMKRG 770
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 629 SGYCEQNDIHSPFVTIYES-LLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLV 686
D+ I +S +LFS +R + + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 687 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 1 MVGDEMIRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 58
+VG+ RG +SGG+K+RV ++ L +DE ++ LD+ T +I LR
Sbjct: 130 IVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-- 184
Query: 59 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLE--FFASM 105
G I + + D II+L DG+IV +G EL+ + +A M
Sbjct: 185 -KGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 553 MPEEMKVQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 602
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 603 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVD 661
R G + N I + G Q +PF +I++++ F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 662 SETRKMFIDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 710
T + +DEV+E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 711 NPSIIFMDEPTSGLD 725
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARIS 629
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
Q+ P +T+ +++ F + D + V E++ L +++ P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 748
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 749 TIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGRHSCHLISYFEAIPGVQK 798
H D EA + +M RG +EIY P R+S I GV K
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLK 261
|
Length = 377 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 625
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 626 ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVME 674
A + + Q I P V+ + +LRL+ PE+D I+E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
LV ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 136 LVGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 735 TVRNTVDTGRTVVCTIH 751
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 635
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 636 DIHSPFVTIYE--SLLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLP 689
++ +T+ + L + L+L+ + + R+M I++++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNI 56
+ D +SGGQ++RV + ALA L +DE LD+ ++ LR+ +
Sbjct: 130 LADRYPAQLSGGQRQRVA-----LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-L 183
Query: 57 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 116
H G + + E +L D +++L+ G+I GP + V + P + VA
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVA 235
Query: 117 DFLQEV 122
FL EV
Sbjct: 236 RFLGEV 241
|
Length = 345 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 627
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
+ Q + P T+ E+L + P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 688 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 62/222 (27%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGNITI 615
+L +L VS G AL G SGAGK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 616 SG----YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 671
S +++ GY Q +LR+ P V + ++
Sbjct: 80 SPREVLEVRRKTI-----GYVSQ------------------FLRVIPRVSA------LEV 110
Query: 672 VME-LVE---------------LNPLR--QSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713
V E L+E L L + L LP + S +++R+ IA +A+
Sbjct: 111 VAEPLLERGVPREAARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYP 169
Query: 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
I+ +DEPT+ LDA +V+ + G ++ H +
Sbjct: 170 ILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 626
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 627 RIS-GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETR-KMFIDEV--MELVELNP 680
R G Q+ H + T+Y+++ + + D R +D+V ++ + P
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 741 DTGRTVVCTIH 751
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 617
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 618 ----YPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFI 669
P ++ ++ G Q+ P T+ +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 670 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 730 AIVMRTVRN-TVDTGRTVVCTIHQ 752
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 752 QPSI 755
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 659 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 719 EPTSGLDARAAAIVMRTVRN 738
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-05
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 583 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 632
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 633 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692
Q+ P + +L + + F D+++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 622
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPL 681
++ E + S +T+ E+L + + + + I V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 742 TGRTVVCTI 750
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISGYP--KKQET 624
L ++ + +TA++G SG GK+T ++++ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 625 FARIS---GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 678
+ G Q +PF +I++++ + P + K + E++E L ++
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 679 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 140 ALWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 691 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 747 VCTIHQPSIDIFEAFDELFLMKR 769
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 582 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 636
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 637 IHSPFV-TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVEL-----NPLRQSLVGLP 689
+ FV +IYE++ ++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 14/100 (14%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
++ R +SGG K++++ ++G P++ L +DE ++GLD ++ I + + + G
Sbjct: 128 NKRARTLSGGMKRKLSLAIALIGGPSV-LLLDEPTSGLDPASRRAIWDLIL---EVRKGR 183
Query: 63 AVI----SLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
++I S+ E L D I ++SDG++ G P+EL
Sbjct: 184 SIILTTHSMD----EAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 23/101 (22%)
Query: 11 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 65
SGG ++RV M+ ALA L DE +T LD +T QI++ L+ ++ G AV+
Sbjct: 156 SGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQRELGMAVL 209
Query: 66 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 100
+ T+DL D ++++ G+IV GP E +L
Sbjct: 210 FI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNITISGYPKKQETFA 626
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 627 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-----NP 680
G Q +PF +I++++ + LR+ E D + + ++E ++ L +
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQET 624
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 625 FARISGYCEQNDIHSPFV---TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMEL-VELN 679
+ + YC Q +P + T+Y++L+F +R P+ +F+D++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQ---- 622
L GVS +TAL+G SG GK+T + L R I G++ + G Q
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 623 --ETFARISGYCEQNDIHSPF-VTIYESLLFSA----------WLRLSPEVDSETRKMFI 669
E R+ G Q+ +PF +I E++ + RL D + +
Sbjct: 121 LVELRKRV-GMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELV 177
Query: 670 ----------DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719
DEV + ++ N L GLS Q++RL IA L +P +I MDE
Sbjct: 178 ERSLRQAALWDEVNDRLDDNAL-----------GLSGGQQQRLCIARCLAVDPEVILMDE 226
Query: 720 PTSGLDARAAA 730
P S LD A +
Sbjct: 227 PASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 625
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 626 ARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVE 677
R I F Y SL + L ++ + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 678 LNPLRQSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 725
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFARISGYC 632
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 633 EQNDIHSPF-VTIYESLLFSAWLR-----LSPEVDSETRKMFI-DEVMELVELNPLRQSL 685
Q +PF +IY+++ + A + + V+ R+ + DEV + L+QS
Sbjct: 97 FQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQS- 148
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 ----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 752
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 753 PSIDIFEAF--DELFLMKRG 770
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 4 DEMIRGISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
D +SGGQK+RV G + +GP + L +DE + GLD +++ L++ + G
Sbjct: 133 DRPPFNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGK 190
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
+I + + D +++L DG+I+ G +
Sbjct: 191 TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701
++IYE++ F +V + IDE +E L + VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 752
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 626
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 627 RISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
+ G Q + F TI + + F L LS + E + + M +V L
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS---EEEI-ENRVKRAMNIVGL-----D 133
Query: 685 LVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
S LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQE--T 624
L V+ G TA +G +G+GK+T+M +L G G + I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 625 FARISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRK------MFIDEVMELV 676
+ G Q F T+ + + F +S E ++E + I E L
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EAEALAREKLALVGISE--SLF 139
Query: 677 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
E NP LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 140 EKNPFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +G T+V H D+ D ++++++G
Sbjct: 189 KKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 627
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 628 ISGY----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLR 682
Q + P +++ E++LF L S +KM + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 2 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQ 88
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 11 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 70
SGGQ++RV +V + DE LD + ++++ L+ I+ G VI L
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH- 206
Query: 71 APETYDL----FDDIILLSDGQIVYQGPRE 96
DL D II L G+IV+ GP
Sbjct: 207 ---QVDLAKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + S G K++V +V L +DE ++GLD T + + ++Q N G A
Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRA 185
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
VI E L D +I+L G++V +G E +
Sbjct: 186 VIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITI---SGYPKKQET 624
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 625 FARISGYCEQNDIHSPF-----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL- 678
A I+ N F + I SL + + + EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 679 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+ + Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 738 NTVDTGRTVV 747
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 625
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
R+S +P +T E++ + L LS + E IDE++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRG 770
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 632
+S R G A++G +G+GK+TL +LAG +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 633 EQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
Q I F SL + LRL+ +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 626
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 627 RIS---GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
R+ G Q + F TI + + F P E ++ +V EL++L L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG------PVNLGENKQEAYKKVPELLKLVQLP 140
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVD 741
+ V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 141 EDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++ H + DE+ +M G
Sbjct: 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 10 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
+SGG+++RV ++ ALA L +DE ++ LD + +++ LR ++ G V
Sbjct: 139 LSGGERQRV-----LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTV 192
Query: 65 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 99
+ +L D +ILL DG+IV QG E VL
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 8 RGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 66
+SGGQK+RV +V P L + DE + LDS + +V +++ G ++
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL- 196
Query: 67 LLQPAPETYDLFDDIILLSDGQIV 90
++ D+ D I+ + DG+++
Sbjct: 197 IVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 741 DTGRTVVCTIHQPSIDIF 758
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----E 623
+L +S F G + ++G SGAGK+TL+ ++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 624 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+I +Q P + T+ +++ + L+ VD E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEY-------YLSIVGLN- 121
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FA 626
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 627 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R G QN D T+ + + F + P + R +DE + V + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRG 770
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISL 67
ISGGQK+R+ ++ + L +DE ++ LD+ T +IVN L +++ T V
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHR 668
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE--FFASM 105
L A ++ D II+L G+I+ QG EL+ F+AS+
Sbjct: 669 LSVAKQS----DKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFARIS 629
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 630 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-- 686
++ + PF +I+E++ + +R R+ ++E +E N LR + +
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWD 149
Query: 687 ----GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFARISGY 631
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 632 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691
I + + LL S D T F E+ + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 627
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 628 ISGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
+ QN +H TI ++ ++ + S E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 685 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+G E RG+SGGQ++ V ++ L +DE ++ +D ++ ++ LRQ +
Sbjct: 133 QIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ--LLGD 189
Query: 61 GTAVI-----SLLQPAPETYDLFDDIILLSDGQIVYQG 93
T +I SLL DL D II++ G+IV G
Sbjct: 190 KTLIIITHRPSLL-------DLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCL 52
D +SGG +KRV ALA LF+DE ++GLD + I +
Sbjct: 138 AADLYPSELSGGMRKRV---------ALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 53 RQNIHINS--GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 102
R +N G VI + + D + +L+DG+++ +G E V +FF
Sbjct: 189 R---ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 10 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GT 62
+SGGQK+RV + ALA L DE ++ LD TT I+ L+ IN G
Sbjct: 142 LSGGQKQRVA-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGL 193
Query: 63 AVISLLQPAPE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 121
++ L+ E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 194 TIV-LITHEMEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGE 244
Query: 122 VTS 124
Sbjct: 245 TLE 247
|
Length = 339 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 622
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 623 ETFARIS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
+T I G QN + FV T+ + + F R P E K+ + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 678 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 738 N-TVDTGRTVVCTIHQPSIDIFEA 760
TV+ H DI EA
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 632
VS + G A++G +GAGKTTL+++L ++ G I I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 633 EQNDIHSPFVTIYESL-LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------- 683
+ + T+++ LF+ +R + + E +EV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 684 --SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 742 T---GRTVVCTIHQPS 754
RT H+ S
Sbjct: 516 ALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 23/95 (24%)
Query: 10 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
+SGG+++RV ++ ALA L +DE ++ LD + +++ LR+ + G V
Sbjct: 98 LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR-LARERGKTV 151
Query: 65 ISLLQPAPETYDL------FDDIILLSDGQIVYQG 93
+ +L +DL D +ILL DG+IV QG
Sbjct: 152 VMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFARISGYC 632
+TA +G SG GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 633 EQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691
++ +PF ++I++++ + R + D + + +++ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
D + SGG ++R+ ++ LF+DE +TGLD T I + +R G
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGV 175
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
++ E L D I ++ G+I+ +G P EL
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 11 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--L 68
SGGQ++RV +V L +DE G+D T I LR+ + T ++ L
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDL 192
Query: 69 QPAPETYDLFDDIILLSDGQIVYQG 93
+ FD ++LL + +V G
Sbjct: 193 GLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 11 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--- 67
SGGQK+RV + L +DE TG+D + +I + L++ + G V+ +
Sbjct: 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHD 198
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
L FD +I L + ++ GP E VL
Sbjct: 199 LGLVM---AYFDRVICL-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 11 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV- 64
SGGQ++RV + ALA L +DE + LD S Q++N L+ + G
Sbjct: 431 SGGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYL 484
Query: 65 -IS-----LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 101
IS + A D + ++ DG+IV +GP E V E
Sbjct: 485 FISHDLAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ +RV ++ L +DE + GLD +++ L ++IH SG V+ +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTH 202
Query: 70 PAPETYDLFDDIILLSDGQIVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 121
+ D D + LL G I+ G P ++ E F + PK AD LQ+
Sbjct: 203 LMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 9 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS- 66
G SGG+KKR +M + P LA+ +DEI +GLD + + + + +I+
Sbjct: 144 GFSGGEKKRNEILQMALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202
Query: 67 ------LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
++P D + +L DG+IV G EL E
Sbjct: 203 YQRLLNYIKP--------DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 10 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 68 LQPAPETYDLFDDIILL------SDGQIVYQG 93
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 11 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 61
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
R +SGG+K+RV + DE + LD T + N L + + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 68 LQPAPETY-DLFDDIILLSDGQIVYQG-PRELVLEF 101
PE DL D I L +G+I +G P E+V F
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 585 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 635
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLRQSLVGLP 689
P +T+ ++L+ A R+ + + ++++E + L PL
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 750 IHQ 752
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ 622
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 623 ETFAR---ISGYCEQNDIHSPF-----VTIYESLLFSAWL---RLSPEVDSETRKMFIDE 671
+ R ++ Q + P +++Y+++ + + R E+D ++
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 672 VMELVEL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 727 RAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 765
A+ V +++ + + T+V H + F F
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 621
+N +S +TAL+G SG GK+T + D++ ++ G I + I
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 622 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 678
R G Q +PF +IY ++ + L+ + E RK +DE++E L +
Sbjct: 97 VVNLRREIGMVFQKP--NPFPKSIYNNITHA--LKYA----GERRKSVLDEIVEESLTKA 148
Query: 679 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ L S + L G Q++RL IA L P+++ +DEP S LD
Sbjct: 149 ALWDEVKDRLHSSALSLSG------GQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 752
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 753 PSIDIFEAFDELFLMKRGGQE 773
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 43/181 (23%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETF---ARI 628
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 629 SGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSLV 686
G Q +PF +IY+++ + P++ + K +DE++E L V
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYG------PKLHGLAKNKKKLDEIVE----KSLTS--V 133
Query: 687 GL---------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
GL LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 738 N 738
Sbjct: 194 E 194
|
Length = 251 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 623
L VS +TAL+G SG GK+T + L I G ++I G Y +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 624 T--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
+ G Q +PF ++IY+++ + P + +K +D V+E N
Sbjct: 88 VVELRKNVGMVFQKP--NPFPMSIYDNVAYG------PRIHGANKKD-LDGVVE----NA 134
Query: 681 LRQSLV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
LR + + P +S LS Q++RL IA L P II DEPTS LD + A +
Sbjct: 135 LRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI 193
Query: 733 MRTVRNTVDTGRTVVCTIH 751
+ N + T+V H
Sbjct: 194 EDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 10 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 60
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 61 GTAVISLLQPAPETYDLFDDIILLSDGQ 88
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 25/100 (25%)
Query: 10 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAV 64
+SGGQKKRV G + + P + + +DE ++GLD QI+ L ++ I T +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TII 191
Query: 65 ISLLQPAPETYDL------FDDIILLSDGQIVYQG-PREL 97
IS T+D+ D + ++SDG+I+ +G P+E+
Sbjct: 192 IS-------THDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 4 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
D +S G+++RV +V P L L +DE + GLD Q++N L +
Sbjct: 166 DRPFGSLSQGEQRRVLIARALVKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAP 224
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 93
A++ + A E F +LL +G++V QG
Sbjct: 225 ALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 567 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGNITI 615
LVL ++ S G + LMG+SG+GK+TL+ V G K G G++ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 616 SGYPKKQETFAR---ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 672
+ R +S +Q + P+ T+ E++ F L + +E RK +DE
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 673 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARI 628
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 629 SGYCE----------QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
E QN P +++ E++ + +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 679 NPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 731
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 732 VMR 734
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT---GNITISGYP 619
L ++ +TA +G SG GK+TL+ ++ G I NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 620 KKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL--RLS-PEVDSE-----TRKMFID 670
A++ G Q +PF ++IY+++ F L +LS E+D T+ +
Sbjct: 89 IAL-LRAKV-GMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
EV + L QS G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 145 EVK-----DKLHQS--GY----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 622
LE K VLL VS + G LT ++G +G+GK+TL+ L IS +
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EG 715
Query: 623 ETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-----VMELV 676
+A S Y Q AW+ ++ V +F DE + + V
Sbjct: 716 RVWAERSIAYVPQQ----------------AWI-MNATVRGNI--LFFDEEDAARLADAV 756
Query: 677 ELNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 725
++ L L L G GL TE Q+ R+++A + AN + +D+P S LD
Sbjct: 757 RVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 726 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
A V+ G+T V HQ
Sbjct: 815 AHVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
E +SGGQ++R+ ++ L +DE ++ LD T I+ L Q I G V
Sbjct: 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ---ILQGRTV 661
Query: 65 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
I ++ T D II+L G+IV QG E +L
Sbjct: 662 I-IIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 10 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISL 67
+SGGQ++RV + P L L DE LD T+ Q+++ L+ I+ G T +I+L
Sbjct: 146 LSGGQQQRVAIARALAQQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINL 203
Query: 68 LQPAPETYDL----FDDIILLSDGQIVYQGP 94
Q DL D I+ L G+IV+ G
Sbjct: 204 HQ-----VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR----QNIHINSGT 62
I+ +S GQKKRV +V A L +DE + GLD + Q++ +R Q H+ +
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 93
I L+ Y++ D + +L GQI+ G
Sbjct: 194 HDIDLI------YEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 4 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 62
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + + G
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGL 200
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
AVI + L ++++ G++V G + VL+
Sbjct: 201 AVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 26/105 (24%)
Query: 10 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
+SGGQK+RV + ALA L DE ++ LD TT I+ LR IN +
Sbjct: 141 LSGGQKQRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGL 192
Query: 65 ISLLQPAPETY------DLFDDIILLSDGQIVYQGPRELVLEFFA 103
+L T+ + D + ++ G++V +G V E FA
Sbjct: 193 TIVLI----THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.003
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFAR 627
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQS 684
I QND ++ E++LF L + + + ++ L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDT 742
+G GV+ LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
+T + H I D + +M GG+ +G
Sbjct: 812 NKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 28/127 (22%)
Query: 9 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAV 64
G SGG+KKR ++++ P LA+ +DE +GLD + +N LR+ G +
Sbjct: 144 GFSGGEKKRNEILQLLLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLI 199
Query: 65 ISLLQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 119
I+ Q L D I +L DG+IV G EL E + KG
Sbjct: 200 ITHYQ------RLLDYIKPDKVHVLYDGRIVKSGDPELAEEL---------EEKGYDWLK 244
Query: 120 QEVTSRK 126
+ V
Sbjct: 245 EVVGGEA 251
|
Length = 251 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 9 GISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
+SGGQK+RV G + + P L DE + GLD +I+ N++ T ++
Sbjct: 165 ELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILV- 221
Query: 68 LQPAPETYDLFDDI-------ILLSDGQIVYQG 93
T+DL D++ I DG+I+ G
Sbjct: 222 ------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 1 MVG-----DEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 54
MVG D M +SGGQ++RV + + P + LF DE+++ LD +++N +R+
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLF-DEVTSALDPELVGEVLNVIRR 191
Query: 55 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRK 113
+ T ++ + + D + G+IV QG P E+ FR PK +
Sbjct: 192 LASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGKPDEI---------FRQPKEE 241
Query: 114 GVADFLQEV 122
+FL +V
Sbjct: 242 RTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 570 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GN 612
++ VS A+R VL AL+G +G+GK+TL +L G Y G
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 613 ITISGYPKKQETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 670
I + G P + + R Q D P V + ++ L A + L ++ E +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQ----VW 447
Query: 671 EVMELVELNPLRQSLV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+ +E V+L L +SL GL G LS Q++ L +A LV P I+ +DE T+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 725 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 508 DSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 38/164 (23%)
Query: 582 LTALMGVSGAGKTTLM-------DVLAGRKTGG---YITGNITISGYPKKQET--FARIS 629
+ A +G SG GK+TL+ D++ G K G Y NI Y + + R
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI----YDSQINSVKLRRQV 103
Query: 630 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG- 687
G Q +PF +IYE++ F+ P + + + ELVE + LR++ +
Sbjct: 104 GMVFQRP--NPFPKSIYENIAFA------PRANG-----YKGNLDELVE-DSLRRAAIWE 149
Query: 688 ------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ LS Q++RL IA + P ++ MDEP S LD
Sbjct: 150 EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1140 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.98 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.91 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.9 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.9 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.89 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.89 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.88 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.88 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.86 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.85 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.85 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.85 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.85 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.84 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.84 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.81 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.81 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.8 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.79 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.79 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.78 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.78 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.78 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.77 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.77 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.77 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.76 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.76 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.76 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.76 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.76 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.76 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.76 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.76 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.75 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.75 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.75 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.75 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.75 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.74 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.74 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.74 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.74 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.73 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.73 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.73 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.73 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.73 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.73 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.73 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.73 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.73 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.73 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.72 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.72 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.72 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.72 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.72 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.72 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.72 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.71 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.71 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.71 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.71 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.71 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.71 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.71 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.71 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.71 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.71 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.71 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.71 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.71 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.71 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.71 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.71 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.71 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.7 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.7 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.7 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.7 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.7 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.7 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.7 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.7 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.7 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.7 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.7 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.7 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.7 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.69 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.69 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.69 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.69 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.69 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.69 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.69 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.69 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.69 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.69 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-185 Score=1665.58 Aligned_cols=1101 Identities=52% Similarity=0.924 Sum_probs=1004.4
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+|||+++||+||||||||+||++++++|+++|+||+|.||||.++.++++++|++++..++|.+++|+||+++++.+||+
T Consensus 252 ~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~ 331 (1391)
T KOG0065|consen 252 LVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDD 331 (1391)
T ss_pred eecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.+++.+.+.+....+..++.+.|.+++.+.++
T Consensus 332 v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l 411 (1391)
T KOG0065|consen 332 VILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKL 411 (1391)
T ss_pred eeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHH
Confidence 99999999999999999999999999999999999999999999888888887777777777889999999999999999
Q ss_pred HHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001146 161 SDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240 (1140)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~ 240 (1140)
..+...+.++.+.+.......++..+.|+|++.++.|.+..++||..++....++.++++++.|++|++.+. ++..+.
T Consensus 412 ~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~ 489 (1391)
T KOG0065|consen 412 KKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGG 489 (1391)
T ss_pred HHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccc
Confidence 998888888777777777788899999999999999999999999999999999999999999999999874 445556
Q ss_pred cchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccCchh
Q 001146 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 320 (1140)
Q Consensus 241 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~~~~ 320 (1140)
..+.|++||++.+.++.+++++...++++|+++|||...+|+||+|.++.+++++|..++...+|.+|.||+.|++++++
T Consensus 490 ~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~ 569 (1391)
T KOG0065|consen 490 YSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAG 569 (1391)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHh
Q 001146 321 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVAN 400 (1140)
Q Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 400 (1140)
+||.+++.++.++.++.+++++++++++++.+|+.+|++.++++.+++||+++..+||+||+|++|++|+.|++++++.|
T Consensus 570 rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~N 649 (1391)
T KOG0065|consen 570 RFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSN 649 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccccCCC---------------CcchHHHHHhhcCcc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 401 EFLGHSWKKFTQDS---------------SETLGVQVLKSRGFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 401 e~~~~~~~~~~~~~---------------~~~~g~~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
||+++++.|.+.++ ....|.++++.+++. ....|+|+++++++++.++|.+++.+++.|.
T Consensus 650 EF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl 729 (1391)
T KOG0065|consen 650 EFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYL 729 (1391)
T ss_pred hhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhc
Confidence 99999888763221 244577888887777 5567899999999999999999999999999
Q ss_pred CCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCCCCcccCCCCc
Q 001146 461 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540 (1140)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1140)
++..++......+.......... .+. + ...+..++. ....++++..+..+.
T Consensus 730 ~p~~~~~~~l~~~~~~~~~~~~~---------~~~-----------------~--~~~~~~~~s-~~~~~~~~~~~~~~~ 780 (1391)
T KOG0065|consen 730 KPLKKSGAILVFKKGKEKKKVKS---------AGS-----------------S--SEIEKLDDS-SHQEKNKMVLPFTPL 780 (1391)
T ss_pred Cccccccceeeeccchhhhcchh---------ccc-----------------c--ccccccccc-cccccccccCCCccc
Confidence 99888877665443222111000 000 0 000000000 000123334444456
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||.+-.+++-..+.++ +++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|++||.|.
T Consensus 781 ~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~ 857 (1391)
T KOG0065|consen 781 SLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPK 857 (1391)
T ss_pred cccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeC
Confidence 667777777666554444443 67889999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++..++|.+|||.|+|.|.|.+||||.|.|+|.+|++.+.+.++|.+.|+++++.++|.+++|.+||.+| +|||.+|||
T Consensus 858 ~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRK 936 (1391)
T KOG0065|consen 858 DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRK 936 (1391)
T ss_pred chhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhhCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p-~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++||.+|+.|| .||+|||||||||++++..|++.+|+++++|+||+||+||||.++++.||++++|++||++||+||.
T Consensus 937 rLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 937 RLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred eeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCC-CCCCCCC
Q 001146 780 GRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPG-SKDLYFP 858 (1140)
Q Consensus 780 ~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 858 (1140)
+++++++++||+++++. +|++..|||||+||+++...+...+.||++.|++|++++++++++++++++++. ..+...+
T Consensus 1017 G~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~ 1095 (1391)
T KOG0065|consen 1017 GENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFK 1095 (1391)
T ss_pred ccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccc
Confidence 99999999999999886 577777999999999998877777889999999999999999999999988877 6666777
Q ss_pred CccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 001146 859 TQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCS 938 (1140)
Q Consensus 859 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 938 (1140)
++|+.|+|.|++.++||+++.+||+|.++++|++..++.||++|++||++++ +.++++|.+|++|+++++.+...+.
T Consensus 1096 ~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1096 TRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999999999999999999999999999999999985 6899999999999999998887776
Q ss_pred hhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 001146 939 SVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018 (1140)
Q Consensus 939 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~ 1018 (1140)
...+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.+++|+|+||.+++.+|++|++.+++..++.+.+
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccC--------
Q 001146 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD-------- 1090 (1140)
Q Consensus 1019 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~-------- 1090 (1140)
|+|+.+++||.+.|+.+.+++++++.+|||+++|++.||.||+|+||+||+.|.+++++..+++|.+..|..
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p 1332 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP 1332 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888854
Q ss_pred -CCCCHHHHHHhhcC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1091 -TGETVKQFLKDYFD----FKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1091 -~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
.|.++++|+.+.+| +.++.......+..++.+++..++.+.+||.+++||
T Consensus 1333 p~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1333 PSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 34589999999999 777777777778888999999999999999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-178 Score=1731.12 Aligned_cols=1138 Identities=61% Similarity=1.097 Sum_probs=977.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+|||+.+|||||||||||+|||+|+++|+||||||||||||+.++.++++.|+++++..++|+|+++|||+.+++++||+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 37999999999999999999999999999999999999999999999999999988777899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+||.+++++||+++||+||+++|||||+++++++.++++++.....++...+.+++.++|++++.+.+.
T Consensus 408 vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~ 487 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQL 487 (1470)
T ss_pred EEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999876655554444444456789999999998777666
Q ss_pred HHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001146 161 SDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240 (1140)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~ 240 (1140)
.++...+.++...+........+..+++.|++.+++|.++.++||+..+..++++.+++|+++|++||+++.+.....++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~ 567 (1470)
T PLN03140 488 ENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567 (1470)
T ss_pred HHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Confidence 55544333322222222233457788899999999999999999999999999999999999999999997665555556
Q ss_pred cchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccCchh
Q 001146 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 320 (1140)
Q Consensus 241 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~~~~ 320 (1140)
+.+.|++||++.+.++.++..+..++.+||+|+|||..++|++++|++|++++++|+.++.+++|++|+|||+|++++++
T Consensus 568 ~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 568 ALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 77899999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHh
Q 001146 321 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVAN 400 (1140)
Q Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 400 (1140)
+|+.+++.++++..++.+++.+++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++.|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccc-cCCCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccceeeccccccc
Q 001146 401 EFLGHSWKKF-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ 479 (1140)
Q Consensus 401 e~~~~~~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (1140)
||.+..+.+. +.......|.+++..+++...+.|+|+++++++++.++|.+++++++++.+...........+......
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~ 807 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEME 807 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhh
Confidence 9988765432 222345679999999999888889999999999999999999999999988655444332211100000
Q ss_pred ccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCCCCcccCCCCcEEEEEeEEEEEecCchhhh
Q 001146 480 DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV 559 (1140)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1140)
............-.+..........|........... ...........+.++..|..+..++|+||+|.++.+...+.
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~ 885 (1470)
T PLN03140 808 GEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD--SSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKE 885 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccCCCcceEEEEEEEEEEccCccccc
Confidence 0000000000000000000000000000000000000 00000001112233344666788999999999987654333
Q ss_pred cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCC
Q 001146 560 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 639 (1140)
Q Consensus 560 ~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~ 639 (1140)
.+...+++++|+|||++++|||++||+||||||||||||+|+|+.++++.+|+|.+||.+.+...+++.+|||+|+|.++
T Consensus 886 ~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~ 965 (1470)
T PLN03140 886 QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965 (1470)
T ss_pred cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccC
Confidence 33334566899999999999999999999999999999999999876678999999998876555677899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
|.+||+||+.|++.++.+...+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||
T Consensus 966 ~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE 1045 (1470)
T PLN03140 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045 (1470)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999999988887655666667788999999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKI 799 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~ 799 (1140)
||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++||+++|+||++++++++++||++++|.++|
T Consensus 1046 PTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1046 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 99999999999999999999988999999999999778999999999998899999999987778899999999777779
Q ss_pred CCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcchHHHHHHHHHHHHHH
Q 001146 800 KDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWS 879 (1140)
Q Consensus 800 ~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 879 (1140)
|+++|||||++|+++...+.....||++.|++|+.+++.++.+++...+++..++...+++++.++|+|+++|++|++++
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 1205 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205 (1470)
T ss_pred CCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHH
Confidence 99999999999998765554455689999999999998877777666554444444445678999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCC
Q 001146 880 YWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGM 959 (1140)
Q Consensus 880 ~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~ 959 (1140)
+||||.++..|+++++++|+++|++||+++++..+.++++++.|++|++++++++.++.+++|.+..||++|+||+++|+
T Consensus 1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999987666789999999999999999998888899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001146 960 YAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLF 1039 (1140)
Q Consensus 960 Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 1039 (1140)
|++.+|++|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++|+++++++||.++|+.+++++
T Consensus 1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccCCC----CCHHHHHHhhcCCCCCchhHHHH
Q 001146 1040 YGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTG----ETVKQFLKDYFDFKHDFLGVVAA 1115 (1140)
Q Consensus 1040 ~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 1115 (1140)
++++++|+||++|+++||+||+|++|+||++|+++|++.|||+|.+.+|.+.+ .++.+|++++|||+++++|++++
T Consensus 1366 ~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1445 (1470)
T PLN03140 1366 YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAA 1445 (1470)
T ss_pred HHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhh
Confidence 99999999999999999999999999999999999999999999887665533 56789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1116 VLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1116 il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
|+++|+++|+++++++++++|||||
T Consensus 1446 il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1446 VLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-160 Score=1569.56 Aligned_cols=1099 Identities=31% Similarity=0.542 Sum_probs=905.0
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
.|||+.+|+|||||||||+|||+|+++|+||||||||||||+.++.++++.|+++++..|+|||+++|||+.+++++||+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 37899999999999999999999999999999999999999999999999999988767899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+|+.+++++||+++||+||+++|||||+++++++++.. .... .+.....+.+++.+.|++++.+++.
T Consensus 281 v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~ 358 (1394)
T TIGR00956 281 VIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPG-YEKKVPRTPQEFETYWRNSPEYAQL 358 (1394)
T ss_pred EEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-cccc-ccccCCCCHHHHHHHHHcCHHHHHH
Confidence 9999999999999999999999999999999999999999998765421 1111 1111235678899999888766554
Q ss_pred HHhhcCCccC-----c----------cccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 001146 161 SDELRTPFDK-----S----------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 225 (1140)
Q Consensus 161 ~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~ 225 (1140)
..+.+...++ . ...........+..+++.|++.+++|.++..+||+..+.+++++.+++|+++|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~ 438 (1394)
T TIGR00956 359 MKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSS 438 (1394)
T ss_pred HHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4433221110 0 000011122346678999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCccccccchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHH
Q 001146 226 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVW 305 (1140)
Q Consensus 226 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~ 305 (1140)
+||+.+.+..+ .+.+.|++|+++.+..+.++..+..++.+|++++||+..++|++++|++|+.++++|+.++.+++|
T Consensus 439 ~F~~~~~~~~~---~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if 515 (1394)
T TIGR00956 439 VFYNLPKNTSD---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVF 515 (1394)
T ss_pred hhcCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865443 456799999999998888888888888999999999999999999999999999999999999999
Q ss_pred HhhhhhccCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhh
Q 001146 306 VFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAY 385 (1140)
Q Consensus 306 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~ 385 (1140)
++|+|||+|++.++++|+.+++..++...++.+++.+++++++++.+|+.+++++.+++++|+||+++.+.||.||+|++
T Consensus 516 ~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~ 595 (1394)
T TIGR00956 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIY 595 (1394)
T ss_pred HhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHhhcCCCccccc---cC-----------CC----------CcchHHHHHhhcCccccchhhHHHHHH
Q 001146 386 WCSPLTYAQNAIVANEFLGHSWKKF---TQ-----------DS----------SETLGVQVLKSRGFFAHEYWYWLGLGA 441 (1140)
Q Consensus 386 ~isp~~y~~~a~~~ne~~~~~~~~~---~~-----------~~----------~~~~g~~~l~~~~~~~~~~~~~~~~~~ 441 (1140)
|+||++|++++++.|||.+..+.|. +. .. +...|.+++.. .+.....+.|+++++
T Consensus 596 yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gi 674 (1394)
T TIGR00956 596 YVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGI 674 (1394)
T ss_pred HcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHH
Confidence 9999999999999999999877663 11 01 13467888884 333334578999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhh
Q 001146 442 LFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLA 521 (1140)
Q Consensus 442 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1140)
++++.++|.+.+++++.+.+........................ ... ....+..+..........
T Consensus 675 l~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~e~~~~~~~~~~~-- 739 (1394)
T TIGR00956 675 IIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGE---------TSA----SNKNDIEAGEVLGSTDLT-- 739 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhccc---------ccc----cccccccccccCCCCccc--
Confidence 99999999999999999987555443332211100000000000 000 000000000000000000
Q ss_pred hhhccCCCCCCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 522 EAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
.+.+................++|+||+++++.+ ++++.+|+|||++++|||++||+||||||||||||+|+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~La 810 (1394)
T TIGR00956 740 DESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA 810 (1394)
T ss_pred cccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 000000000000001112358999999998532 13467999999999999999999999999999999999
Q ss_pred cCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 602 GRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 602 g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
|+.+++ +.+|+|.+||++... .+++.++||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.++|.+
T Consensus 811 g~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~ 889 (1394)
T TIGR00956 811 ERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES 889 (1394)
T ss_pred CCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 987644 457999999998753 467889999999999999999999999998887655666777788999999999999
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHHHHhhCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH
Q 001146 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 759 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~-illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~ 759 (1140)
+.|+.+|.++ .+||||||||++||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+..+++
T Consensus 890 ~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~ 968 (1394)
T TIGR00956 890 YADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFE 968 (1394)
T ss_pred hCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH
Confidence 9999998764 3799999999999999999997 9999999999999999999999999988899999999999976788
Q ss_pred hhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHH
Q 001146 760 AFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNK 839 (1140)
Q Consensus 760 ~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 839 (1140)
.||++++|++||+++|+|++++.++++++||+.+ |.++||+++|||||++|+++...+.....++.+.|+.|+.++...
T Consensus 969 ~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 969 EFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred hcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHH
Confidence 9999999998779999999987778899999998 445799999999999999876443333468999999998887765
Q ss_pred HHHHhhCCCCCCC---CCCCCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChh
Q 001146 840 ALIEDLSRPPPGS---KDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQ 916 (1140)
Q Consensus 840 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~ 916 (1140)
+.++....+.... .......+++.|+++|+++|++|+++++||||.++.+|+++++++|+++|++||++++ +++
T Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~ 1124 (1394)
T TIGR00956 1048 NELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQ 1124 (1394)
T ss_pred HHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHH
Confidence 5554443221111 1111224688999999999999999999999999999999999999999999999986 467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 001146 917 DLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVF-YREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFE 995 (1140)
Q Consensus 917 ~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~ 995 (1140)
++++|+|++|+++++.++.. ...++.|+.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||+
T Consensus 1125 ~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~ 1203 (1394)
T TIGR00956 1125 GLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFY 1203 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeeccccc
Confidence 89999999999888777653 45567788888886 89999999999999999999999999999999999999999999
Q ss_pred cchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcH
Q 001146 996 WTAAK-------FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANP 1068 (1140)
Q Consensus 996 ~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp 1068 (1140)
+++.. |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||++++++||.||+|++|+||
T Consensus 1204 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp 1283 (1394)
T TIGR00956 1204 WNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSP 1283 (1394)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCH
Confidence 88766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcccccCC---------CC--------------------------------CHHHHHHhhcCCCC
Q 001146 1069 IAWTLYGLVASQFGDMDDKKMDT---------GE--------------------------------TVKQFLKDYFDFKH 1107 (1140)
Q Consensus 1069 ~~y~~~~l~~nef~~~~~~~~~~---------~~--------------------------------~~~~~~~~~~~~~~ 1107 (1140)
++|+++|++.|||++.+..|.+. |. ++.+++ ..+|++.
T Consensus 1284 ~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~ 1362 (1394)
T TIGR00956 1284 FTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKY 1362 (1394)
T ss_pred HHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcc
Confidence 99999999999999987766331 11 334444 5679999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001146 1108 DFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138 (1140)
Q Consensus 1108 ~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1138 (1140)
++.|+|++|+++|++++ ++.++++.+....
T Consensus 1363 ~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1363 SGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred cccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 99999999999999988 7777888876443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-97 Score=898.73 Aligned_cols=579 Identities=31% Similarity=0.579 Sum_probs=504.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEc
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 616 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 616 (1140)
.+..++|+|++++.+..+. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567999999998753211 3578999999999999999999999999999999999998764 689999999
Q ss_pred CcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 617 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 617 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
|++...+.+++.+|||+|||.++|++||+|++.|++.+|++...++++++++|+++++++||.+++|+++|+++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98887788999999999999999999999999999999999888899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred CCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchh--hh-hhh---cccHHHHHhhcHHHHHHHH-HHHhhCCCC
Q 001146 777 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS--QE-LAL---GIDFTEHYKRSDLYRRNKA-LIEDLSRPP 849 (1140)
Q Consensus 777 g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~--~~-~~~---~~~~~~~~~~s~~~~~~~~-~~~~~~~~~ 849 (1140)
|++ +++.+||+++| . +||++.||+||++|+.+.. .+ ... .....+.++..+...+... ..+...+.
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 998 57899999995 4 5999999999999988742 11 000 0001111110111111100 00111110
Q ss_pred CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHH
Q 001146 850 PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAV 929 (1140)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 929 (1140)
.+ .+.....+||.|++.+++|.+++.+|||.+...|.++.+++|+++|++||+++++ ..+++++.|++|+.+
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 01 1111268999999999999999999999999999999999999999999999763 456679999999999
Q ss_pred HHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHH
Q 001146 930 LFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMY 1009 (1140)
Q Consensus 930 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~ 1009 (1140)
.++.+.++.+.++.|++||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99989888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCccccc
Q 001146 1010 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKM 1089 (1140)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~ 1089 (1140)
+..+++++++++++++.||...|..+++++++.+++|+||+++.++||.||+|++|+|+++|++|+++.|||.+....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333443
Q ss_pred CCC----CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1090 DTG----ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1090 ~~~----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
..+ ...++.++...+++..+.|.++.+++++.++|++++++++++..+.+|
T Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 221 123444556789999999999999999999999999999998776654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-96 Score=902.90 Aligned_cols=566 Identities=29% Similarity=0.491 Sum_probs=498.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
+++++|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.++||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999987653 358999999998765667788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~-~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887666777788889999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCC
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 802 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 802 (1140)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|++ +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999988899999999999888999999999998 4899999997 46899999995 3 69999
Q ss_pred CCcccceeeccchhhhhh-----hcccHHHHHhhcHHHHHHHHHHHhhCCCCC---CCCCCCCCCccCcchHHHHHHHHH
Q 001146 803 YNPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPP---GSKDLYFPTQFSQSSWIQFVACLW 874 (1140)
Q Consensus 803 ~npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 874 (1140)
.|||||++|+.+.+.+.. ...++.+.|+.++.+++..+.........+ .........++..+|++|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999986543211 112455667777665554333322111110 111111224567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHH
Q 001146 875 KQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 954 (1140)
Q Consensus 875 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 954 (1140)
|+++..||||.++..|+++.+++|+++|++||+++.+ .++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999863 5788999999999999888888777788899999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 001146 955 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAI 1034 (1140)
Q Consensus 955 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1034 (1140)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcc-cccCC-----CCCHHHHHHhhcCCCCC
Q 001146 1035 VSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD-KKMDT-----GETVKQFLKDYFDFKHD 1108 (1140)
Q Consensus 1035 ~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~ 1108 (1140)
+++++++++++|+||++++++||+||+|++|+||++|++++++.|||++..+ +|... ++..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 56431 11235777789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1109 FLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1109 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
+.|+++++|+++.++|+++++++|++...++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-95 Score=894.46 Aligned_cols=581 Identities=24% Similarity=0.412 Sum_probs=482.3
Q ss_pred CcEEEEEeEEEEEecCchh--------------hhc--ccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 539 PHSLTFDEVVYSVDMPEEM--------------KVQ--GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+.+++|.|++|+++..... +.. ....+++++|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999998644200 000 112245789999999999999999999999999999999999
Q ss_pred CCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 001146 603 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682 (1140)
Q Consensus 603 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 682 (1140)
+.+++..+|+|.+||++.... .++.++||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.++.
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876544689999999986533 3456899999999999999999999998777655555666677889999999999999
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999887889999999999999999999999999999999999999999999999988899999999999977899999
Q ss_pred eEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhh---------hcccHHHHHhhcH
Q 001146 763 ELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA---------LGIDFTEHYKRSD 833 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~---------~~~~~~~~~~~s~ 833 (1140)
++++|++ |+++|+|+. +++.+||+++| . +||+++|||||++|+++...+.. ......+.|++..
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 9999985 899999997 57899999995 3 69999999999999987532100 0011223443211
Q ss_pred HHHHHHHHHHh--hCC-CCC-----CCCCC-CCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 001146 834 LYRRNKALIED--LSR-PPP-----GSKDL-YFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 904 (1140)
Q Consensus 834 ~~~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~ 904 (1140)
.++..+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~l 426 (659)
T PLN03211 349 -APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLM 426 (659)
T ss_pred -cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 000 000 00000 011234578999999999999988 899999999999999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 001146 905 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVY 984 (1140)
Q Consensus 905 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~ 984 (1140)
||+++ ..++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|
T Consensus 427 f~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if 501 (659)
T PLN03211 427 WWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIF 501 (659)
T ss_pred HhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99984 4578999999999999988888777889999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhH
Q 001146 985 GAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYY 1064 (1140)
Q Consensus 985 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~ 1064 (1140)
++|+|||+||++++.+||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++
T Consensus 502 ~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ 579 (659)
T PLN03211 502 LTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIK 579 (659)
T ss_pred HhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred hhcHHHHHHHHHHHHhhCCCc-----ccccCC-C--CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 1065 WANPIAWTLYGLVASQFGDMD-----DKKMDT-G--ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFN 1136 (1140)
Q Consensus 1065 ~isp~~y~~~~l~~nef~~~~-----~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~ 1136 (1140)
|+||++|+||+++.|||++.. .+|... + .....++ ...+++....|.++++|++++++|+++++++|++++
T Consensus 580 ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 580 YISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999997643 245321 1 1111222 223444556899999999999999999999999887
Q ss_pred c
Q 001146 1137 F 1137 (1140)
Q Consensus 1137 ~ 1137 (1140)
|
T Consensus 659 ~ 659 (659)
T PLN03211 659 H 659 (659)
T ss_pred C
Confidence 5
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-93 Score=938.82 Aligned_cols=589 Identities=24% Similarity=0.388 Sum_probs=507.1
Q ss_pred CCcEEEEEeEEEEEecCchh-------------h-h-----cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHH
Q 001146 538 EPHSLTFDEVVYSVDMPEEM-------------K-V-----QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~-------------~-~-----~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~ 598 (1140)
....++|+|++......+.. . . .+..+.++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999876321110 0 0 122234578999999999999999999999999999999
Q ss_pred HHhcCCcC--ceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHH-HH
Q 001146 599 VLAGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP----EVDSETRKM-FI 669 (1140)
Q Consensus 599 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 669 (1140)
+|+|+..+ .+.+|+|.+||.+... ...++.++||+|+|.++|.+||+||+.|++.++.+. ..+++++++ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987643 234567999999999999999999999998877543 233444333 35
Q ss_pred HHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEE
Q 001146 670 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 748 (1140)
Q Consensus 670 ~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~ 748 (1140)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|+|+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999999888999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhh---------
Q 001146 749 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL--------- 819 (1140)
Q Consensus 749 ~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~--------- 819 (1140)
++|||+.+++++||++++|++ |+++|+|++ +++.+||+++| + .||++.|||||++|+++.+++.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG-~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG-F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC-C-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998889999999999985 899999997 57899999995 4 6999999999999998764321
Q ss_pred -hhcccHHHHHhhcHHHHHHHHHHHhhCCCC---------------CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcC
Q 001146 820 -ALGIDFTEHYKRSDLYRRNKALIEDLSRPP---------------PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 883 (1140)
Q Consensus 820 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 883 (1140)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+++|+++|++|+++++|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123478899999988776655444321110 0001112234678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChH
Q 001146 884 PPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 963 (1140)
Q Consensus 884 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 963 (1140)
|.++..|+++++++|+++|++||+++++ ++++++|.|++||++++.++.++.++. .+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHH
Confidence 9999999999999999999999999863 567899999999999999999887764 456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001146 964 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLW 1043 (1140)
Q Consensus 964 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1043 (1140)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccC---C---------------------C---CCHH
Q 001146 1044 NVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---T---------------------G---ETVK 1096 (1140)
Q Consensus 1044 ~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~---~---------------------~---~~~~ 1096 (1140)
++|+||++|+++||+||+|++|+||++|+|||++.|||++.+++|.. . | .++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999998887741 0 1 1456
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001146 1097 QFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137 (1140)
Q Consensus 1097 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1137 (1140)
+|+...||++.+|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88877899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-92 Score=923.31 Aligned_cols=593 Identities=24% Similarity=0.394 Sum_probs=499.5
Q ss_pred CCCcEEEEEeEEEEEecCchh-----------------h-hcc---cccCceeeeeCceEEEeCceEEEEeCCCCCChHH
Q 001146 537 FEPHSLTFDEVVYSVDMPEEM-----------------K-VQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 595 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~---~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKST 595 (1140)
.+..+++|+|++......... . ..+ .++.+++||+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 346789999999876521100 0 001 1224578999999999999999999999999999
Q ss_pred HHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-------CCCHHHH--
Q 001146 596 LMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-------EVDSETR-- 665 (1140)
Q Consensus 596 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-------~~~~~~~-- 665 (1140)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+||+.|+++++.+. +...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987642 458999999998755444678999999999999999999999998876321 1111111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 666 ----------------------KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 666 ----------------------~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 802 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 802 (1140)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++ |+++|+||+ +++.+||+++| + +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCCC
Confidence 999999999999999976 5899999999998899999999999985 899999997 57899999995 4 69999
Q ss_pred CCcccceeeccchhhhh------------hhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcchHHHHH
Q 001146 803 YNPATWMLEVSAASQEL------------ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFV 870 (1140)
Q Consensus 803 ~npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 870 (1140)
.|||||++|+++..++. ....++++.|++|+.+++..+.++.........+.....++|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 99999999998864321 112467889999987766544433211111111111123458899999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHH
Q 001146 871 ACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 950 (1140)
Q Consensus 871 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 950 (1140)
.|++|+++.++|||..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch
Confidence 9999999999999999999999999999999999999986544444566788999999998888777664 667899999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 001146 951 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHH 1030 (1140)
Q Consensus 951 ~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1140)
|+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCccc-c--cCCCCCHHHHHHhhcCCCC
Q 001146 1031 IAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK-K--MDTGETVKQFLKDYFDFKH 1107 (1140)
Q Consensus 1031 ~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 1107 (1140)
+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|+++|||.+..+. + +....+.|+.+++.+|+..
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~ 758 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCc
Confidence 999999999999999999999999999999999999999999999999999776543 1 1112334555558899975
Q ss_pred C--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001146 1108 D--FLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137 (1140)
Q Consensus 1108 ~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1137 (1140)
+ |.|+++++|+||+++|+++++++++|++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4 67999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-87 Score=811.89 Aligned_cols=564 Identities=26% Similarity=0.462 Sum_probs=501.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
.+..+|+|+|+-++||+++.++||+||||||||++|+|..+.. ...|+|.+||.+.++...++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4457999999999999999999999999999999999975532 235799999998876444788999999999999999
Q ss_pred HHHHHHHHHHccCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEe
Q 001146 644 IYESLLFSAWLRLSPE----VDSETRK-MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlD 718 (1140)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++||++|+...||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCc
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQ 797 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~ 797 (1140)
|+|+|||+.++.++++.||++++. +.|.+++.|||+.+++++||+|++|.+ |+++|+||+ .++++||+++| +
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999864 899999999999999999999999996 899999998 46899999995 4
Q ss_pred CCCCCCCcccceeeccchhhhh-----------hhc-ccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcch
Q 001146 798 KIKDGYNPATWMLEVSAASQEL-----------ALG-IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSS 865 (1140)
Q Consensus 798 ~~~~~~npad~~l~~~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1140)
.||+..++|||+.++++..++. ... .++.+.|.+++.+++....++.......+.+......+|..++
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999998833221 111 4789999999998887655543332222333334456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001146 866 WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 945 (1140)
Q Consensus 866 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 945 (1140)
|.|++.|+.|.++.+.||..++..++++.+++|+++|++||+.+. .+..+.+.|.|++||++++..++.+.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 4566788999999999999999998887 4456
Q ss_pred hhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001146 946 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1025 (1140)
Q Consensus 946 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1140)
+.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccCCCC------------
Q 001146 1026 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGE------------ 1093 (1140)
Q Consensus 1026 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~~~~------------ 1093 (1140)
+++...|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+.+|.+.|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999973211
Q ss_pred ------------CHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001146 1094 ------------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138 (1140)
Q Consensus 1094 ------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1138 (1140)
.+.+|++..|++++.|.|+++||++||.++|.++..+++.|++.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 346778888889999999999999999999999999999999853
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-77 Score=726.61 Aligned_cols=688 Identities=20% Similarity=0.234 Sum_probs=421.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..-+|||||||||||||||++||+||+|||||||||++||..|+++|++ +++++||+||| ||++|++++|+|
T Consensus 483 vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~-~~~grTTivVa---HRLStIrnaD~I 557 (1228)
T KOG0055|consen 483 VGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK-ASKGRTTIVVA---HRLSTIRNADKI 557 (1228)
T ss_pred ccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH-hhcCCeEEEEe---eehhhhhccCEE
Confidence 564 4455999999999999999999999999999999999999888888876 77899999999 999999999999
Q ss_pred EEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhHH
Q 001146 82 ILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 161 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 161 (1140)
+||++|++||+|+|+||++. .+.+.-+.+....+..++. .+.++. ..++.....+.+.......
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~----~~~~~~~s~~~s~~~~~~~ 621 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEEEES----LKEERSRSLKSSSSSPSLS 621 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-cccccc----hhhhhhhcccccccccccc
Confidence 99999999999999999961 1333333332211111000 000000 0000000000000000000
Q ss_pred Hhh-cCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-------HHH---hccc
Q 001146 162 DEL-RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY-------MTL---FLRT 230 (1140)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~-------g~~---f~~~ 230 (1140)
... ....... ............ .......++|.++.++++|.+.++..+.+++.|... +.+ |+..
T Consensus 622 ~~~~~~~~~~~-~~~~e~~~~~~~---~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~ 697 (1228)
T KOG0055|consen 622 RGSNRSNLLSV-KPEGEDPEEPVS---EEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP 697 (1228)
T ss_pred CCccccccccc-cccccccccccc---cccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC
Confidence 000 0000000 000000000000 000233466778888888888777777766655443 222 2222
Q ss_pred CCCCCccccccchhhHHHHHHHHHHHhhh--HHH--HHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHH
Q 001146 231 KMHKDTVTDGGIFAGATFFAITMVNFNGF--SEI--SMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 306 (1140)
Q Consensus 231 ~~~~~~~~~~~~~~g~~f~~~~~~~~~~~--~~~--~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~ 306 (1140)
+ .+.+......++++|..++...+... +.. ....+......|...+ +.++..++.+|+.
T Consensus 698 ~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F-----------~~ll~qd~~wFD~---- 760 (1228)
T KOG0055|consen 698 D--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF-----------RALLRQEVGWFDD---- 760 (1228)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHcCCCcccCC----
Confidence 2 12222223347888877776555332 111 1122222333333322 2445555555542
Q ss_pred hhhhhccCccCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 001146 307 FLSYYVVGYDSNAGRFFKQYALLLGV-----NQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWW 381 (1140)
Q Consensus 307 ~i~Y~~~gl~~~~~~f~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~ 381 (1140)
-+++ ++...++...... ..-...+...++++...+.+|+.++|-+.++.+.+..+++-..-+ .-
T Consensus 761 --------~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~--~~ 829 (1228)
T KOG0055|consen 761 --------PENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYL--QK 829 (1228)
T ss_pred --------Cccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 2345 7666666543222 112223344455555566778888877766555543333210000 00
Q ss_pred hhhhhhC---HHHHHHHHHHHhhcCCCccccccCCCCcchHHHHHhhcCc-----cccchhhHHHHHHHHHHHHHHH-HH
Q 001146 382 KWAYWCS---PLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-----FAHEYWYWLGLGALFGFVLLLN-FA 452 (1140)
Q Consensus 382 ~w~~~is---p~~y~~~a~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~ 452 (1140)
+++...+ --.|...+.+++|...+..+ ....+....+++.+.- ...........++.+++...+. +.
T Consensus 830 ~~~~~~~~~~~~~~~ea~~iA~eai~NIrT----V~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~ 905 (1228)
T KOG0055|consen 830 KFLKGFSKDDKKAYEEASKIAIEAVSNIRT----VAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905 (1228)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11244455555555432110 0001111122211110 0000111222345555554333 44
Q ss_pred HHHHHhhcCCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCC--C
Q 001146 453 YTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK--K 530 (1140)
Q Consensus 453 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 530 (1140)
|+++++|.... ..++...... .-.++....+++..+++..++.|+..+++.++...+...+.++..+. .
T Consensus 906 ~A~~f~~G~~L-------i~~g~~~~~~--~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 906 YALSFWYGARL-------ISNGEMTFED--VFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHhHHH-------HhcCCcCHHH--HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 56667774221 1111111100 00122334455666677778999999999999999999887664433 2
Q ss_pred CCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE
Q 001146 531 KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 610 (1140)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~ 610 (1140)
.+...+...+.++++||+|+||.+|+ .+||+|+|+++++|+.+||||||||||||++.+|...++ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsRP~----------~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTRPD----------VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCCCC----------chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 33334556789999999999998764 457999999999999999999999999999999976555 669
Q ss_pred EEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHcCCcccc
Q 001146 611 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-----KMFIDEVMELVELNPLR 682 (1140)
Q Consensus 611 G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~ 682 (1140)
|.|.+||.+++. ..+|+++|.|.|+|.+|. -|++||+.|+. . +.+.++. .+.+++.+ .+|.+-.
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI--~sLP~Gy 1116 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFI--SSLPQGY 1116 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHH--hcCcCcc
Confidence 999999999865 457899999999999986 79999999981 1 1333321 12222222 2567788
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
||.+|..|. +||||||||++||||+++||+||||||+||+||+++++.|+++|++.. .|||.|+++|+++ ..+.+|
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD 1192 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNAD 1192 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCC
Confidence 999998775 599999999999999999999999999999999999999999999864 5999999999987 478899
Q ss_pred eEEEEecCCEEEEECCCC
Q 001146 763 ELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~~ 780 (1140)
.|.++++ |+++..|+-+
T Consensus 1193 ~I~Vi~~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1193 VIAVLKN-GKVVEQGTHD 1209 (1228)
T ss_pred EEEEEEC-CEEEecccHH
Confidence 9999985 8999999863
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=593.38 Aligned_cols=442 Identities=27% Similarity=0.470 Sum_probs=371.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+...||||||||||||||.+|+.||+|||||||||||||.+|.+|++.|+++|++ |+|||+||||||++++++||+
T Consensus 162 ~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 162 LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhH
Confidence 4788888999999999999999999999999999999999999999999999999976 999999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCch--hhhhhhhhcCCCCccCCHHHHHHHHHhchhhh
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK--DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQ 158 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 158 (1140)
+++|++|+++|+|+.+++++||++.|++||++.||+||++|+.+.+ .+.... ..+..+..+.++..+...
T Consensus 241 l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 312 (613)
T KOG0061|consen 241 LLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE--------AVRIAKLINKFSQTDNLK 312 (613)
T ss_pred hhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh--------HHHHHHHhhhccccchhh
Confidence 9999999999999999999999999999999999999999988743 111000 000011111111000000
Q ss_pred hHHHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 001146 159 KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 238 (1140)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~ 238 (1140)
+............ . ........+++.|+..+.+|.++...|++.....|.++.+++++++|.+||+.+.+...+
T Consensus 313 ~~~~~~~~~~~~~----~-~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~- 386 (613)
T KOG0061|consen 313 KTLEALEKSLSTS----K-KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI- 386 (613)
T ss_pred hhHHHHhhhcccc----c-ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH-
Confidence 0000000000000 0 000011578999999999999999999999999999999999999999999997655443
Q ss_pred cccchhhHHHHHHHHHHHhhhH-HHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccC
Q 001146 239 DGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 317 (1140)
Q Consensus 239 ~~~~~~g~~f~~~~~~~~~~~~-~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~ 317 (1140)
.++.|++|+++....+..+. .+..+..+++++.||+..++|+.++|++|+.+.++|+.++.+++|+.++|||+|+++
T Consensus 387 --~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~ 464 (613)
T KOG0061|consen 387 --QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNP 464 (613)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCc
Confidence 36789999998888776554 688889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHH
Q 001146 318 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 397 (1140)
Q Consensus 318 ~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~ 397 (1140)
+..+|+.+++...+....+.+++.++++..++...|.++++++.+++++|+||+++.+.||.||+|+.|+|+.+|++|++
T Consensus 465 ~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l 544 (613)
T KOG0061|consen 465 GLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEAL 544 (613)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccccccC--CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001146 398 VANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 461 (1140)
Q Consensus 398 ~~ne~~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 461 (1140)
+.|||.+....|... ..+...+.+++...++... ..|.++.++.++.++++.+.++++++..
T Consensus 545 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 545 LINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998633333332 3456678889988888654 3688999999999999999999988853
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=581.36 Aligned_cols=440 Identities=19% Similarity=0.301 Sum_probs=352.9
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+...++||||||||++|||+|+++|+||+|||||||||+.++..+++.|+++++ .++|||+++|||+.++++.||+
T Consensus 198 ~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhce
Confidence 368888999999999999999999999999999999999999999999999999875 6899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+|+++++++||+++|++||+++|||||++|+++.+...+...+.+ .....+.+.+.|++... ++.
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~ 352 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSERE---KPNVKQSLVASYNTLLA-PKV 352 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccc---cchHHHHHHHHHHhhcc-HHH
Confidence 99999999999999999999999999999999999999999987543211000000 00112333344432111 000
Q ss_pred HHhhc---CCccCc------cccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccC
Q 001146 161 SDELR---TPFDKS------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTK 231 (1140)
Q Consensus 161 ~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~ 231 (1140)
..... ...... ...........+..+++.|+..+++|.++. +|++....+|+++.+++|+++|++||+.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00000 000000 000000011123467889999999999887 78888778999999999999999999874
Q ss_pred CCCCccccccchhhHHHHHHHHHHH-hhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhh
Q 001146 232 MHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSY 310 (1140)
Q Consensus 232 ~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y 310 (1140)
. .+.+++.|++|+++.+..+ ..+..+..+..+|++++||+..++|++++|++|+.+.++|+.++.+++|+.|+|
T Consensus 432 --~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 --F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred --H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 2 2345678999998777555 456778888899999999999999999999999999999999999999999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHH
Q 001146 311 YVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPL 390 (1140)
Q Consensus 311 ~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~ 390 (1140)
||+|++.++++|+.+++...+...++++++.+++++++++.+|+.+++++.+++++|+||+++ +||.||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHhhcCCCcc-----ccccC-----CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 391 TYAQNAIVANEFLGHSW-----KKFTQ-----DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 391 ~y~~~a~~~ne~~~~~~-----~~~~~-----~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
+|++++++.|||.+... .|... ..+...+...+. ....|.+++++.++.++++++.++++++.
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999976432 23111 112122222222 23468899999999999999999988764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-60 Score=581.40 Aligned_cols=447 Identities=22% Similarity=0.388 Sum_probs=373.7
Q ss_pred CCCCC-ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 1 MVGDE-MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 1 ~VG~~-~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
.||++ ..|+|||||||||+|||+|+++|+||||||||||||+.++..+++.|+++++ .|+|||+++|||+.++++.||
T Consensus 157 ~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFD 235 (617)
T ss_pred ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhc
Confidence 36765 3789999999999999999999999999999999999999999999999875 589999999999999999999
Q ss_pred ceEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhh
Q 001146 80 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 159 (1140)
Q Consensus 80 ~I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 159 (1140)
+|++|++|+++|+|+++++++||+++|++||++.||+||++++++....... ......+++.+.++.++...+
T Consensus 236 ~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~ 308 (617)
T TIGR00955 236 KIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRD 308 (617)
T ss_pred eEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHH
Confidence 9999999999999999999999999999999999999999998764322110 011123445555555544333
Q ss_pred HHHhhcCCccC--cc-ccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 001146 160 ISDELRTPFDK--SK-SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 236 (1140)
Q Consensus 160 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~ 236 (1140)
........... .. ..........+..+++.|+..+++|.++..+|++..+..++++.+++|+++|.+|++.+.+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~ 388 (617)
T TIGR00955 309 MLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388 (617)
T ss_pred HHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 32222111000 00 0000011223457789999999999999999999999999999999999999999998755433
Q ss_pred cccccchhhHHHHHHHHHHHhhh-HHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCc
Q 001146 237 VTDGGIFAGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 315 (1140)
Q Consensus 237 ~~~~~~~~g~~f~~~~~~~~~~~-~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl 315 (1140)
..++.|++|+++....+..+ ..+..+..+|++++||+..++|++++|++|+.+.++|+.++.+++|.+|+|||+|+
T Consensus 389 ---~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl 465 (617)
T TIGR00955 389 ---VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGL 465 (617)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccC
Confidence 34568889998887777654 45667778999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHH
Q 001146 316 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 395 (1140)
Q Consensus 316 ~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 395 (1140)
+.++++|+.+++...+...++.+++.++++++++..+|..+++++.+++++|+||+++.++||.||+|++|+||++|+++
T Consensus 466 ~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~ 545 (617)
T TIGR00955 466 RSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNE 545 (617)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcc-ccccC---CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 396 AIVANEFLGHSW-KKFTQ---DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 396 a~~~ne~~~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
+++.|||.+..+ .|... ..|...|.++++.+++... +.|.+.++++++.++|.+++++++++.
T Consensus 546 al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 546 GLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988664 33211 1244568899998888654 458899999999999999999998873
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=608.15 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=181.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-----------
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----------- 607 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~----------- 607 (1140)
.+.++|+||+|+|+.++ ++++|+|+||+|+||+.+||+||||||||||+++|.|.+++.
T Consensus 1163 ~g~I~f~nVsF~Y~~~~----------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRP----------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCCC----------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 35799999999997421 235899999999999999999999999999999999987651
Q ss_pred -----------------------------------------eEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCC
Q 001146 608 -----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 608 -----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 643 (1140)
+.+|+|.+||.++.. ..+|+.++||+|++.+|+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 148999999998754 567889999999999985 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
++|||.++. ++.++++ ++++++..+ |.+-.||.+|..| ..||||||||++|||||+++|+||+
T Consensus 1312 IreNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1312 IYENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred HHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999862 2334333 444555444 3455688898655 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecC---CEE-EEECCCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQE-IYVGPLG 780 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g---g~~-~~~g~~~ 780 (1140)
||||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |++ +..|+.+
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 999999999999999999999986 36899999999985 46789999999862 674 4789853
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-55 Score=579.15 Aligned_cols=214 Identities=22% Similarity=0.307 Sum_probs=179.5
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.|+|+||+|+|+. +..++|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 1235 ~g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCE
Confidence 357999999999951 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+++++|||++.+|+ .|+||||.+.. ..++++ +.++++..++. +-.|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC
Confidence 8754 467889999999999997 59999997631 223332 45555555553 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||++++..+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999875 4899999999986 355689999998
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++.+|++++
T Consensus 1447 ~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 A-GRVVEFDTPEN 1458 (1622)
T ss_pred C-CEEEEeCCHHH
Confidence 5 89999999853
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=581.59 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=178.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++|+||+|+|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 1232 ~g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~ 1298 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDC 1298 (1495)
T ss_pred CCcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCE
Confidence 357999999999941 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.+ ..+|+++++|||++.+++ .|+||||.+.. +.++++ +.++++..++.+ -.|+.+|.
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 8754 467889999999999997 59999997531 233332 456666665543 45677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||+++++.+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1368 ~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS 1443 (1495)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999864 5899999999986 355699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 1444 ~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1444 S-GQVLEYDSPQ 1454 (1495)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=548.07 Aligned_cols=223 Identities=28% Similarity=0.412 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|.. +++.+|+|+|+.|++||++||+||||||||||+|+|+|...+ .+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4899999998841 125699999999999999999999999999999999998774 489999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233344566789999999998888765 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 78899999999985 89999998
Q ss_pred CCcchhHHHHHH
Q 001146 779 LGRHSCHLISYF 790 (1140)
Q Consensus 779 ~~~~~~~~~~~f 790 (1140)
+ +++...|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 7 3455544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=551.21 Aligned_cols=213 Identities=18% Similarity=0.234 Sum_probs=179.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++|+||+++|+.. ...+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.
T Consensus 1282 ~g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCE
Confidence 3679999999999621 13589999999999999999999999999999999998774 5899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+.+++|||++.+|+ .|+||||... ...++++ +.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPF------SQYSDEE----VWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccC-ccHHHHcCcc------cCCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8764 467889999999999998 5999999621 1233333 45666666654 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||++++..+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 5899999999986 456789999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++.+|+++
T Consensus 1494 ~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1494 K-GEVAEFGAPS 1504 (1522)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=473.42 Aligned_cols=225 Identities=25% Similarity=0.318 Sum_probs=185.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~- 620 (1140)
++++|++..|..++... ....+...+++||||++++||++||+|+||||||||.++|+|+..+ .+|.|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~ 356 (539)
T COG1123 281 LSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLD 356 (539)
T ss_pred eEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccc
Confidence 67788888876543111 0112456789999999999999999999999999999999998874 589999999762
Q ss_pred -Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCc
Q 001146 621 -KQ---ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 693 (1140)
Q Consensus 621 -~~---~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~ 693 (1140)
+. ...++.+-+|+|++ .+.|.+||++++.-........ ...++++++.++++..+|.. ..+.+ .++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 11 23456677888876 6789999999998776544322 24566778999999999985 34433 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|++|||||.||+..+.++.++|+++.++ |.|.|+++||++ -+..+||||++|++ |+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~ 507 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GR 507 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999999999865 999999999987 57889999999995 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
+|..||.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999975
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=546.27 Aligned_cols=213 Identities=24% Similarity=0.271 Sum_probs=179.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.|+|+||+|+|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.
T Consensus 1306 ~G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~ 1372 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGR 1372 (1560)
T ss_pred CCeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 357999999999952 223589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+|+.+++|||++.+|+ .|++|||... ...+++ .+.++++..++.+ -.|+.+|.
T Consensus 1373 di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1373 EIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EcccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccC
Confidence 8754 467899999999999987 5999999532 123333 3567777777654 35777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.| ..||||||||++|||||+++ |+||+||||||+||+++.+.+++.|++.. +++|+|+++|+++ ....||+|++|
T Consensus 1442 ~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred Cc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 44 56999999999999999995 89999999999999999999999998864 4899999999985 56789999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++..|+++
T Consensus 1518 d~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1518 DH-GAVAEMGSPR 1529 (1560)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=511.00 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=178.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
+.++|+||+++|+. +.+.+|+|+||+|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999962 22468999999999999999999999999999999999865 37999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+.. ..+|+.++||||++.+|+ .|+||||.... ..+++ .+.++++.+++.+ -.|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCCHH----HHHHHHHHCCCHHHHHhCccccccccccC
Confidence 754 457889999999999998 59999995321 22332 3567777777643 357777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
| ..||||||||++|||||+++|+||+||||||+||..+...+++.|++.. +++|||+++|+++ ....+|||++|++
T Consensus 1351 G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 G-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred C-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 4 5699999999999999999999999999999999999999999999864 4799999999985 4566999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999999974
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=472.20 Aligned_cols=225 Identities=22% Similarity=0.295 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.... .. +...+++.+|+|+||++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++.
T Consensus 276 l~~~~l~~~~~~~~~-~~-~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 276 LDVEQLQVAFPIRKG-IL-KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred ccccCcEEEeecCcc-cc-ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 667888888741100 00 000023468999999999999999999999999999999999864 3799999998763
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. .+++.++|++|++ .+++.+||+||+.+....+.. .....+.+++++++++.+++. +..+.. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 21 1345689999996 478889999999886543211 122333445678999999996 355554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-G 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57789999999985 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|++
T Consensus 503 ~i~~~~~~ 510 (529)
T PRK15134 503 EVVEQGDC 510 (529)
T ss_pred EEEEEcCH
Confidence 99999875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=483.02 Aligned_cols=214 Identities=22% Similarity=0.312 Sum_probs=176.3
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.|+|+|++.+|. + +-..||+|||++|+|||.+||+|..|||||||+++|-+... +.+|+|.|||
T Consensus 1135 ~~G~I~f~~~~~RYr--p---------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDg 1201 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYR--P---------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDG 1201 (1381)
T ss_pred CCCeEEEEEeEEEeC--C---------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcC
Confidence 357899999999994 1 23458999999999999999999999999999999998766 3589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g 687 (1140)
.++.. .++|++++.+||||.+|. .|+|.||.=. .+.++++ +-+++|..+|.+ ..|+.+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf------~e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF------DEYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccCcc------cccCHHH----HHHHHHHhChHHHHhhCCcCCCceec
Confidence 99865 568899999999999987 7999998521 1223332 345555554432 3455554
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+ +...+|-||||-+++||||+++++||+|||+|++.|+++-..|+++||+.- +++|||.+.|+.+. +.+ +|||++|
T Consensus 1271 e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVl 1346 (1381)
T KOG0054|consen 1271 E-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVL 1346 (1381)
T ss_pred C-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEe
Confidence 4 345799999999999999999999999999999999999999999999854 48999999999974 544 6999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++.+|+|.
T Consensus 1347 d~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1347 DA-GRVVEFDSPA 1358 (1381)
T ss_pred eC-CeEeecCChH
Confidence 96 8999999984
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=475.00 Aligned_cols=227 Identities=21% Similarity=0.232 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+.+... . ....+.+.+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 38899999998521100 0 0001124699999999999999999999999999999999998763 489999999876
Q ss_pred Cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
.. ..+++.++||+|++ .+++.+||.|++.+....+. ....++.+++++++++.+||. +..+.. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12456799999997 58889999999987654321 112334456688999999995 455554 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.++|||+++|++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 8999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=411.12 Aligned_cols=228 Identities=24% Similarity=0.304 Sum_probs=192.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++.+|+...++.++..-.+ ......++++||+++++||.++|+|.||||||||=.+|.++..+ +|+|.++|++
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 346777888777765432111 12446799999999999999999999999999999999987764 4999999998
Q ss_pred cCc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 620 KKQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
+.. +..|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..+|.+++.++++++||++. +... ..
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~R--YP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNR--YP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--Hhhc--CC
Confidence 753 34677889999998 578999999999887766543 46778899999999999999863 2222 35
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.|||||||++||||++.+|++++||||||+||-.-+.+++++|+++.+ .|.+-++++||+. -+..+||+|++|.+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~- 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD- 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-
Confidence 78999999999999999999999999999999999999999999999975 4899999999987 57889999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++|..||.
T Consensus 503 GkiVE~G~~ 511 (534)
T COG4172 503 GKIVEQGPT 511 (534)
T ss_pred CEEeeeCCH
Confidence 899999996
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=465.81 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc-Ccc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 619 (1140)
++++|++++|+... .+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 77889998884100 1224689999999999999999999999999999999998763 48999996 532
Q ss_pred --cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccc
Q 001146 620 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 686 (1140)
Q Consensus 620 --~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~ 686 (1140)
+.. ...++.++|++|++.+++.+||+||+.+...+. ...++.+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998764321 122333456788999999975 33444
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999986 6788999999
Q ss_pred EEecCCEEEEECCC
Q 001146 766 LMKRGGQEIYVGPL 779 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~ 779 (1140)
+|++ |+++..|++
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=465.72 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. +++++|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 260 l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 6778888766310 123589999999999999999999999999999999998652 13799999998754
Q ss_pred c----ccccceEEEeccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++ .+++.+||.||+.+........ ..+.++.++.++++++.+++. +..+..+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 403 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI----- 403 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----
Confidence 2 12345689999985 4778899999998753211110 112233345678999999996 4566653
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G 481 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-G 481 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 67889999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
+++..|++++
T Consensus 482 ~i~~~~~~~~ 491 (506)
T PRK13549 482 KLKGDLINHN 491 (506)
T ss_pred EEEEEecccc
Confidence 9999998765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=388.32 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=191.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+.+| ++.++|+|||++|++||+++|+|||||||||||+||.++..+ .+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 7889999887 356799999999999999999999999999999999998774 4899999997653
Q ss_pred ----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
....|+.+|+|+|+..+||++||.||+..+...- .+.++++.++...++++.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346888999999999999999999999875432 2345666677788999999999998886 3579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||||+|||||+.+|+++|+|||||+|||+...++.+.+++++++|.|.||+||++. ...+.+|||++|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999987 5788999999998 48999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=464.72 Aligned_cols=214 Identities=20% Similarity=0.303 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.+. .+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 266 l~~~~l~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~ 328 (510)
T PRK09700 266 FEVRNVTSRDR---------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDIS 328 (510)
T ss_pred EEEeCccccCC---------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECC
Confidence 77888876431 269999999999999999999999999999999998764 4799999998763
Q ss_pred c----ccccceEEEeccC---CCCCCCCCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-cccccccc
Q 001146 622 Q----ETFARISGYCEQN---DIHSPFVTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVG 687 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~---~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~g 687 (1140)
. ...++.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+++. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 407 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI- 407 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-
Confidence 2 1234578999998 45788899999998753211 000 0 11222334578899999996 6666654
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+. ++.+.||++++|
T Consensus 408 ----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l 482 (510)
T PRK09700 408 ----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF 482 (510)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE
Confidence 569999999999999999999999999999999999999999999999878999999999986 678899999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..++.
T Consensus 483 ~~-G~i~~~~~~ 493 (510)
T PRK09700 483 CE-GRLTQILTN 493 (510)
T ss_pred EC-CEEEEEecC
Confidence 85 799998876
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=457.20 Aligned_cols=204 Identities=21% Similarity=0.318 Sum_probs=170.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 641 (1140)
+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 59999999999999999999999999999999998764 479999999876421 2345699999995 57788
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 642 VTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0112233345678999999995 5566653 56999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++ |+++..|++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999986 67889999999985 89999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=457.45 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. .+++.+|+|+||++++||+++|+||||||||||+++|+|..++ +.+|+|.++|+++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 677888776521 0123489999999999999999999999999999999998753 13799999998764
Q ss_pred c----ccccceEEEeccCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 622 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
. ...++.++|++|+. .+++.+||+||+.+... ............++.++++++.+++.+ ..++.+
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI----- 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----
Confidence 2 12356789999995 57889999999987532 110001122333456789999999964 456553
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||++ ++.++||++++|++ |
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-G 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 569999999999999999999999999999999999999999999999888999999999986 68889999999985 7
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999888654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=452.68 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=167.6
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 641 (1140)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 48999999999999999999999999999999998764 479999999876431 1245689999984 47888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+|+.||+......+..........++.++++++.+++. +..++.+ +.|||||||||+|||+|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111010011222334578999999996 5666653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|+|||+.++..+.+.|++++++|.|||+++|+++ ++.++||++++|++ |+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999878999999999986 68889999999985 89999987754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=452.72 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=170.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc----ccccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 641 (1140)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 69999999999999999999999999999999998763 48999999987532 12346789999986 48888
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 642 VTIYESLLFSAWLRL-SPE--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 001 11222335678899999994 5666654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 782 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~ 782 (1140)
||||+|||+.++..+.+.|++++++|.|||++|||++ ++.+.||++++|++ |++++.|++++.
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999888999999999986 68899999999985 799999988653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=445.60 Aligned_cols=215 Identities=19% Similarity=0.292 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 388999999884 23589999999999999999999999999999999996532 1479999999764
Q ss_pred Cc----ccccceEEEeccCCCCCCC--CCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPF--VTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
.. ...++.++|++|++.+++. .|+++++.+.... ........ +.++.++++++.+++.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 1235679999998765433 5777766543211 11111122 22446789999999986 666653
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHH-hhceEEEEec
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 769 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~v~~l~~ 769 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998766 47999999986 5655 5899999985
Q ss_pred CCEEEEEC
Q 001146 770 GGQEIYVG 777 (1140)
Q Consensus 770 gg~~~~~g 777 (1140)
|+++..-
T Consensus 479 -G~i~~~~ 485 (490)
T PRK10938 479 -GDIYRYV 485 (490)
T ss_pred -CceEEee
Confidence 7877654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=443.47 Aligned_cols=216 Identities=17% Similarity=0.246 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEEC
Confidence 37788887642 1379999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCC---CCCCCCCHHHHHHHHHH--c-cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 001146 621 KQE----TFARISGYCEQND---IHSPFVTIYESLLFSAW--L-RLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 689 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~ 689 (1140)
... ..++.++|++|++ .+++.+|+.+|..+... . ...........++.++++++.+++. +..+..
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 388 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ---- 388 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc----
Confidence 431 1245689999985 36788888877433210 0 1000012223345578889999985 344554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.++|||+++|++
T Consensus 389 -~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 -IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred -cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999999888999999999986 68889999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..++++
T Consensus 467 -g~i~~~~~~~ 476 (491)
T PRK10982 467 -GLVAGIVDTK 476 (491)
T ss_pred -CEEEEEEccc
Confidence 8999887764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=423.38 Aligned_cols=250 Identities=25% Similarity=0.409 Sum_probs=209.8
Q ss_pred CCccccccccchhhhhhhhhccCCCCCCcccC-CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEE
Q 001146 505 TDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 583 (1140)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ 583 (1140)
.+.+++..++.+.++..+.++..+.. |...| ...+.|+|+||+|+||.+|+ .+||+|+||+|+|||++
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~----------~~Vlk~lsfti~pGe~v 497 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPD----------VPVLKNLSFTIRPGEVV 497 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCC----------chhhcCceeeeCCCCEE
Confidence 45566777888888888888776655 65555 35678999999999998753 45799999999999999
Q ss_pred EEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 001146 584 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660 (1140)
Q Consensus 584 al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 660 (1140)
|||||||+||||+.++|...++ |.+|+|.+||.|+++ ..+|+++|+|.|||.+|. -||+||+.|+.. +.
T Consensus 498 ALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~ 569 (716)
T KOG0058|consen 498 ALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NA 569 (716)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CC
Confidence 9999999999999999987766 569999999999865 457899999999999986 799999999854 33
Q ss_pred CHHHH-----HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001146 661 DSETR-----KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735 (1140)
Q Consensus 661 ~~~~~-----~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~ 735 (1140)
++++. .+.+++.+. ++.+-.||.+|..|. +||||||||++|||||++||+||||||+||+||++++..|+++
T Consensus 570 t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 33332 233344444 566778999998775 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 736 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|.++.+ ++|||+++|+++ ..+.+|+|+++++ |+++..|..+
T Consensus 647 L~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 647 LDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred HHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccHH
Confidence 998765 699999999986 5788999999985 8999999753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=385.55 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=194.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+..|... ..+...+|+|||++|++||+++|+|+||||||||++++.++..| .+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 6889999887531 12345799999999999999999999999999999999998774 5899999997764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. +..|+.+|+++|+..++...||.||+.|...+.. .+++++++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999988763 56788899999999999999888876 36799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|+|||+|||||+|||++...+++.|+++.++ |.||+++||+++ -+.+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999754 999999999986 47889999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=369.66 Aligned_cols=231 Identities=26% Similarity=0.364 Sum_probs=200.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+++++|++++ +.++|++|||++|++||+++|+||||+|||||||+|.|+.++ .+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 358999999876 467899999999999999999999999999999999999884 48999999998
Q ss_pred cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCC
Q 001146 620 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~ 692 (1140)
+.. ...++++|+++|...+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 2457789999999999999999999998653 23346667777777888899999876 5544 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+|||||+||+++|||++.||++|++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..+||+++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999866 999999999997 69999999999996 8
Q ss_pred EEEEECCCCcc----hhHHHHHHhhCC
Q 001146 772 QEIYVGPLGRH----SCHLISYFEAIP 794 (1140)
Q Consensus 772 ~~~~~g~~~~~----~~~~~~~f~~~~ 794 (1140)
+++++|++++. ...+.+||....
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 99999998642 345778887653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=372.50 Aligned_cols=215 Identities=26% Similarity=0.366 Sum_probs=193.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++|+||++.|. ++.+++|+|++|++||+++++|||||||||+||+|.++..+ .+|+|.+||+++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 68999998874 45689999999999999999999999999999999998874 5899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~LSg 696 (1140)
. ..+|+.+|||-|.-.+||++||.||+.+-..+. +.++++.+++++++++.+||++ +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999877665 4567788889999999999975 55654 578999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||+|||.+||||+.+|++||+|||+++|||.++.++++.++++.++ |+|||++|||.+ +.+++.||+++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999997 7899999999998 589999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
+++|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999853
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=375.83 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+.+++++++|. ..++|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 478899988875 25689999999999999999999999999999999998874 589999999987
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. .....++||+|++.++|.+||+||+.++...+. ..+++++++++++++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 234568999999999999999999999987653 34556667899999999999998876 4689999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||+|||||+.+|++|+||||+++||+.++..+++.|.++.+ .++||+++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999998864 5899999999997 788899999999863
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=377.36 Aligned_cols=216 Identities=26% Similarity=0.436 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. + ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5899999999952 2 58999999999999999999999999999999999877 4589999999987
Q ss_pred CcccccceEEEeccCC---CCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
....-+..+|||||.. .-+| +||+|.+..+...+. -....+++ ++.++++++.+|+.+.+|..+| +||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999954 3345 799999988743332 12223333 5678999999999999999875 599
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||+|||-|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+|+.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999998 6899999999997 48999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 999975
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=437.18 Aligned_cols=266 Identities=27% Similarity=0.392 Sum_probs=213.2
Q ss_pred ccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCC--CCcccCCCCcEEEEEeEEEEEecCchhhhcccccCc
Q 001146 489 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 566 (1140)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1140)
..+.++...++.....+...++..++..+++..+..+..+.. .+.......+.++|+||+|+||.+|+
T Consensus 296 ~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd---------- 365 (1228)
T KOG0055|consen 296 SVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD---------- 365 (1228)
T ss_pred ehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc----------
Confidence 344566666666666666677788888888777655543322 22233345678999999999998753
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 643 (1140)
..||+|+|+.|++||.+||+|||||||||++++|.+.++ |.+|+|.+||.++.. +.+|..+|.|.|+|.+|. .|
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~t 442 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TT 442 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-cc
Confidence 347999999999999999999999999999999998877 569999999998764 457889999999998775 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
++||+.|+. ++.+.++ ++++.+. ..|.+-.||.+|..++. ||||||||++|||||++||+|||
T Consensus 443 I~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILL 512 (1228)
T KOG0055|consen 443 IRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILL 512 (1228)
T ss_pred HHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEE
Confidence 999999862 2333332 2222222 24566778999987764 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||||||+||+++++.|+++|+++. +|+|.|+++|+++ .+ +.+|++++|++ |+++..|..+|
T Consensus 513 LDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 513 LDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred ecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 999999999999999999998864 5999999999987 34 55999999996 89999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=380.18 Aligned_cols=228 Identities=26% Similarity=0.385 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 478999999995 45799999999999999999999999999999999998774 489999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. +.+.+.++||||.....+.+||+|-+.++..-+... ....++.++.++++++.+++.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 456789999999998888899999999875432111 1112333447899999999999999875 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||+.|||||+++|++|+||||||.||...+.++++.+++++ ++|+|||+++||++ ....+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 45999999999998 57899999999985 89999
Q ss_pred ECCCCcc--hhHHHHHH
Q 001146 776 VGPLGRH--SCHLISYF 790 (1140)
Q Consensus 776 ~g~~~~~--~~~~~~~f 790 (1140)
.|++.+. .+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 9998642 33455555
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=364.51 Aligned_cols=220 Identities=26% Similarity=0.327 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+..|+ +++++|+|||++|++||++||+|||||||||||++|.|..+ +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 488999999986 35679999999999999999999999999999999999876 4589999999765
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 621 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.. +.+|+.+||++|...+.|.+||.+|+..+..-+.+ .-.++++ +..+-++++.+|+.+.+-.+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~d-k~~Al~aLervgi~~~A~qra-- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED-KAQALDALERVGILDKAYQRA-- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHHHh--
Confidence 43 34678899999999999999999999876433221 1233444 345678899999998887764
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|||||+|||+|||||+.+|+++|.|||+++|||.+++.+++.|+++.+ +|.|||++.||.+ -..++|||++-|
T Consensus 146 ---~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl 221 (258)
T COG3638 146 ---STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGL 221 (258)
T ss_pred ---ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEe
Confidence 46999999999999999999999999999999999999999999999975 5999999999987 368899999999
Q ss_pred ecCCEEEEECCCCcc
Q 001146 768 KRGGQEIYVGPLGRH 782 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~~ 782 (1140)
++ |+++|+||+.+.
T Consensus 222 ~~-G~ivfDg~~~el 235 (258)
T COG3638 222 KA-GRIVFDGPASEL 235 (258)
T ss_pred cC-CcEEEeCChhhh
Confidence 85 899999999754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=395.40 Aligned_cols=215 Identities=30% Similarity=0.441 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++..|. .++.+|+||||++++||++||+||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 367888888874 136799999999999999999999999999999999998874 589999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.++|.+||+||+.|.+.++.... +..+++++++++.++|.+..+.. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567889999999999999999999999999886532 34556789999999999855544 46799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++||+||+++|++|||||||+||||.++..+.+.|++++++| +||+++||+++ ++.++||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 78889999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
++
T Consensus 220 ~~ 221 (293)
T COG1131 220 TP 221 (293)
T ss_pred CH
Confidence 76
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=366.68 Aligned_cols=209 Identities=27% Similarity=0.416 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.+||+..|... .....+|+|+|++|++||++||+|||||||||||++|.|...+ .+|.+.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4578888877532 1225799999999999999999999999999999999998774 5899999998764
Q ss_pred c------c-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCc
Q 001146 622 Q------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSG 693 (1140)
Q Consensus 622 ~------~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~~~~~ 693 (1140)
. . -.++.+|||+|+..+.|++||.||+.+...+... ...++++.++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 1 2346799999999999999999999987765432 22245667889999999986665 43 467
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++++.||||.+||+.+.+.|++.++++.++ |+|+|++|||+ ++...|||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 99999999997 57899999999996 55
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=424.18 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=164.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 489999999884 23589999999999999999999999999999999998764 4799999873
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgG 697 (1140)
+.++|++|++. +.+.+|++|++.+.. .. . . .++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G-D---DEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C-c---cHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 556799999986421 11 1 1 123467899999984 455554 3579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 359999999986 67788999999986 6777 77
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=417.68 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 489999999884 24589999999999999999999999999999999998764 479999843 2
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGq 698 (1140)
..+||++|++ .+++.+||+||+.+...... .... +...+++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67888999999988643221 1111 122456889999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999998862 4 8999999986 6788999999998767776 455
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=351.45 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=192.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++..+++.+|+. ..++++||||+++.||+++|+|||||||||+|++|++...| .+|.|+++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccc
Confidence 456677777742 22379999999999999999999999999999999998874 4899999998864
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...|+.+|.++.+..++..||++|||.|.+++. +....+.+++++++.+.++|.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 457889999998889999999999999998875 34556667889999999999999999875 6999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|||+|||||+++|++++|||||||||..+.+.+.+.++++.++|++||+++|.+. ++..+||+|++|++ |++++.|++
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999888999999999986 78899999999996 899999997
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 218 ~ 218 (245)
T COG4555 218 E 218 (245)
T ss_pred H
Confidence 5
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=413.03 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=164.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 489999999874 24589999999999999999999999999999999998763 489999844 2
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGq 698 (1140)
..++|++|++ .+++.+||.|++.+...... .... +...+++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999988643211 1111 122457899999864 345543 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 3 8999999986 5778899999998666776 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=387.00 Aligned_cols=216 Identities=28% Similarity=0.392 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+.+|.. ..+|+|+|++|++||+++|+||||||||||||+|+|+.. +.+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg~-------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGS-------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCC-------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 5889999988841 127999999999999999999999999999999999887 4589999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ...+++.+++++++.+.+++.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 345678999999999999999999999998876 345677788899999999999999987 367999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||.. |...++||+++|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999975 8899999999999 589999999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 853
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=370.33 Aligned_cols=206 Identities=29% Similarity=0.449 Sum_probs=185.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc---ccCc-ccccceEEEeccCCCCCCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 641 (1140)
...+++|||++|+.||++||+|||||||||||++|+|+..+ ..|.|.+||. +.+. ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999999874 4899999999 5444 2345789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
|||.||+.|+.+.+ ....++.+.+.+++++++.++|++..+.. +.+|||||||||++||||+..|++||||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998777 33345667778899999999999998876 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 722 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
++||..-++++.+.|+++.++ |.|++++|||+. ++++++|||++|++ |++.-.||+++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 999999999999999999866 999999999987 89999999999996 89999999853
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=389.07 Aligned_cols=218 Identities=26% Similarity=0.384 Sum_probs=195.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+.+|. +..+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|++
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 4689999998873 46789999999999999999999999999999999998874 48999999999
Q ss_pred cCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
+.. ...+|.+|+|+|+..+||+|||+||+.|+.+++ ....+++.+++++++++.++|.+..++. +.+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHH
Confidence 865 345788999999999999999999999998743 2344566778899999999999988876 46899999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
+|||++||||+.+|++||||||.|+||..-+.+++..|+++.++ |.|.|++|||.. +.+.+.|||++|++ |++.-.|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999998754 999999999986 78999999999985 8999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 220 tP~e 223 (352)
T COG3842 220 TPEE 223 (352)
T ss_pred CHHH
Confidence 9864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=341.96 Aligned_cols=214 Identities=25% Similarity=0.317 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+|+||+..|+. .+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 689999998863 3568999999999999999999999999999999999766 45899999999875
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. .-+|+++|+|+||..+.+..||+||+.|..... ..+..+.++++.++++.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 136789999999999999999999999987765 344566778899999999999888765 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||+|||+||||++.+|++|+.||||-+|||..+.++++++.++.+.|.||++.||+.+ -+-.+-.|++.|++ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999999999999999964 24455678888875 89987
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
+...
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=410.76 Aligned_cols=211 Identities=20% Similarity=0.232 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|.. ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~~--------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLGD--------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEECC--------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 4889999988741 148999999999999999999999999999999998764 47999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875321 111 123578999999987777654 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|+++||+. .+..++||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 478877775
Q ss_pred Ccc---hhHHHHHHhhC
Q 001146 780 GRH---SCHLISYFEAI 793 (1140)
Q Consensus 780 ~~~---~~~~~~~f~~~ 793 (1140)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 13345666666
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=408.97 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=188.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCE
Confidence 347999999998841 235699999999999999999999999999999999998774 4899999998
Q ss_pred ccCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 619 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
++.. ...++.+||++|++.+++.+||+||+.|.++++. ...++.+++++++++.+||.+..+..+ +.|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 8743 2346779999999999999999999999876653 223344556889999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+||+||+.+|++|+|||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++..++||+++|++ |+++..
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~ 1141 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCS 1141 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999985 5999999999986 67789999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 1142 Gs~ 1144 (2272)
T TIGR01257 1142 GTP 1144 (2272)
T ss_pred cCH
Confidence 986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=345.09 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=186.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC---CcCceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~---~~~~~~~G~i~~~ 616 (1140)
..++.+|+++.|. ++.+|+|||+.|++++++|++|||||||||||+++... .++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3588999999884 45689999999999999999999999999999999874 3334678999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPG 690 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~ 690 (1140)
|+++.. ..+|+.+|+|+|.|.-|| +|++||+.|+.++....+ ++.++.++..++...|.+. .|.+..+
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998743 357899999999999999 999999999988764322 5566778888888888653 3333222
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+++ +.-|||++||.+. ...+..|+..++..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 24699999999999999999999999999999999999999999999997 5789999999986 57888999999996
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++.+|+.+
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 7999999973
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=412.36 Aligned_cols=197 Identities=22% Similarity=0.363 Sum_probs=161.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 489999999884 24589999999999999999999999999999999998764 4799998641
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgG 697 (1140)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556677776531 1 11 112345788999999963 455553 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+..+||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999886 34 9999999986 57789999999985 7887 78
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=409.51 Aligned_cols=201 Identities=23% Similarity=0.331 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+ ++++|+|+||+|++|++++|+|||||||||||++|+|..++ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 488999999884 24589999999999999999999999999999999998763 4799988 4322
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGq 698 (1140)
.++|++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753211 0111 123467888888885 3455543 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||.. .+...||++++|.++|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999875 459999999975 5778999999997335665 455
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=405.36 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=158.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 489999999884 123589999999999999999999999999999999998764 4799988652
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqr 699 (1140)
..++|++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 2445666664332111111 111 234678999999973 44443 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~ 778 (1140)
|||+|||+|+.+|++|+|||||+|||+.+...+.+.|++. .| |||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999986 57788999999985 7887 7776
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=378.01 Aligned_cols=216 Identities=26% Similarity=0.403 Sum_probs=189.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|. ++.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEe
Confidence 3589999999884 24589999999999999999999999999999999998774 48999999998
Q ss_pred cCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 620 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
+.. ...++.+||++|++.+++.+||+||+.|.+..+. .+..+.+++++++++.+++.+..++.+ +.||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765542 233344456789999999988888765 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++||+||+++|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.++|||+++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999987 78899999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 863
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=339.79 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=191.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+..+|+..+| +++++++|||+++++||+++|+|||||||||.+.++.|...++ +|.|.+||.++
T Consensus 4 ~L~a~~l~K~y-------------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY-------------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCccc
Confidence 45666666555 4567999999999999999999999999999999999988754 89999999988
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
+.. .-|..+||+||++..|..|||+||+......+.. +...++++++++++++++++.++++... ..|||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSG 142 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSG 142 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----ccccc
Confidence 653 2345689999999999999999999987766532 2233566677899999999999999863 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||+.|||||+.+|+.++||||++|.||.+..++++.++.++++|..|++|-|..+ +...+|||.+++++ |+++.+
T Consensus 143 GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~ 220 (243)
T COG1137 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAE 220 (243)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEec
Confidence 9999999999999999999999999999999999999999999999999999999987 78999999999996 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|.+++
T Consensus 221 G~p~e 225 (243)
T COG1137 221 GSPEE 225 (243)
T ss_pred CCHHH
Confidence 99864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=329.35 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=182.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+..++|.|+|...+ =.+++.|++||++||+||||||||||||+|+|...| .+|+|.+||++..
T Consensus 2 l~L~~V~~~y~~~~---------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHLP---------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcce---------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecC
Confidence 45678888886422 247889999999999999999999999999998774 4899999999875
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ....|-+++++||.++|.++||.+|+.++..-.+ +.+. +.+++++.++..+||.++.+++. .+|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~a-~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLNA-EQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccCH-HHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 4 3456778999999999999999999988753221 2233 34566899999999999988874 469999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||++||+|+++-+||+||||+|+|||.-+.+...++.++++ ++.|++++||+|+ ++..+.|+++++++ |++.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999999999999999999999999999999999974 5899999999997 79999999999996 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
.
T Consensus 215 ~ 215 (231)
T COG3840 215 Q 215 (231)
T ss_pred H
Confidence 3
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=377.12 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=188.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. .+.+++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6899999998521 1124699999999999999999999999999999999998774 4899999999864
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|... ++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876543 2344555667889999999998877653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.++||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 57789999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=381.01 Aligned_cols=216 Identities=25% Similarity=0.352 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 378999999883 124589999999999999999999999999999999998774 589999999887
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..+... ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999986543 2344555667899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 999999999986 78999999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 74
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.34 Aligned_cols=215 Identities=25% Similarity=0.360 Sum_probs=189.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998774 489999999886
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..+.. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 223567999999999999999999999986543 234555667889999999999888875 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78899999999995 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 74
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=342.45 Aligned_cols=218 Identities=26% Similarity=0.324 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|+++.|+... ...++|+||||++.+||+++|+|+||||||||.++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 478999999986321 112589999999999999999999999999999999998774 489999999876
Q ss_pred Ccc----cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... .+++.+.+|+||+ .+.|..||++.|.-.... ...++.++ ++.++++.+||.+..-.+ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhc----Cchhc
Confidence 543 3577899999997 578999999988766543 23333333 388999999997633222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+||||||+||+..+.++++.|.++.++ +.|.|+++||.+ -+..+|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999754 789999999987 58899999999996 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..++.+
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999974
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=377.08 Aligned_cols=215 Identities=24% Similarity=0.381 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 589999999884 24589999999999999999999999999999999998874 489999999887
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
... ..++.++||+|+..++|++||+||+.|+...+ ...+++++++++++++.+++.+..+.. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 23567999999999999999999999987543 234555667889999999999887765 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 74
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=378.03 Aligned_cols=216 Identities=24% Similarity=0.331 Sum_probs=189.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE--EEEEEcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISG 617 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~--G~i~~~g 617 (1140)
..++++||+++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g 68 (362)
T TIGR03258 4 GGIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIAD 68 (362)
T ss_pred eEEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECC
Confidence 4689999999884 23589999999999999999999999999999999998774 47 9999999
Q ss_pred cccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 618 YPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 618 ~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.++.. ...++.++||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ++|||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSg 140 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSG 140 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCH
Confidence 87643 223567999999999999999999999987543 2344555667899999999998888764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++
T Consensus 141 Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~ 218 (362)
T TIGR03258 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLA 218 (362)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999876 799999999986 68899999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 219 ~~g~~~ 224 (362)
T TIGR03258 219 AHGEPQ 224 (362)
T ss_pred EEcCHH
Confidence 999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=358.67 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36789998884 23589999999999999999999999999999999998764 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ..+++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+++.+..++.+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 2345679999999999999999999988654221 1233444556788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 57888999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99885
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=372.82 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 589999999884 24589999999999999999999999999999999998774 489999999986
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||+||+.+....+. ....+.+++++++++.++|.+..++.+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2356789999999999999999999997655432 223333455778999999998888765 4699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 63
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=351.93 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=189.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++|+|+. +..+|+|+|+++++||.++|+||||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3789999999862 14689999999999999999999999999999999998874 479999999986
Q ss_pred C----cccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 K----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ....++.+|||+|++.. +-.-||.|.+.|+.... ..+.++.+++++++++.+++.+..+.. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 34578899999999743 44579999999987543 345566788899999999999987765 46799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|+|++|||.+ .+.+++||+++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 699999999987 68889999999995 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=372.95 Aligned_cols=218 Identities=25% Similarity=0.384 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|+++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378999999884 24589999999999999999999999999999999998764 489999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
... ..++.++||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..+..+ .+|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 432 2346799999999999999999999998653211 12334455667899999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999986 68899999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 220 ~~~ 222 (353)
T PRK10851 220 TPD 222 (353)
T ss_pred CHH
Confidence 874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.61 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=178.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 36789998874 24589999999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+..... ....+..++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223467999999999999999999998865432 1223334456788999999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999876 4899999999986 57889999999985 7888765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=372.28 Aligned_cols=215 Identities=22% Similarity=0.327 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999884 24589999999999999999999999999999999998774 489999999986
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..+..+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2344455567899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
+.
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 74
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.00 Aligned_cols=208 Identities=23% Similarity=0.320 Sum_probs=176.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 678999998841 123589999999999999999999999999999999998764 4899999998763
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..+... ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998755331 223334456789999999987776653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985 55
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=388.16 Aligned_cols=222 Identities=28% Similarity=0.425 Sum_probs=184.0
Q ss_pred ccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE
Q 001146 534 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 613 (1140)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i 613 (1140)
..+...+.++++||+|.|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|..++ .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 345567899999999999632 23589999999999999999999999999999999999874 58999
Q ss_pred EEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCccccccc
Q 001146 614 TISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 614 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~ 685 (1140)
.+||.+... ..+|+.+|||+||+.++. -|++||+.++. +..+.++..+ -+++.++ ++..-.|+.
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~ 602 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIE--NLPMGYDTP 602 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHH--hcccccccc
Confidence 999998754 568899999999998875 79999998753 2334333211 1122222 344556788
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+|..| .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +|+|+|+++|+++ ..+.+||++
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 88755 5799999999999999999999999999999999999999999999875 4899999999986 588999999
Q ss_pred EEecCCEEEEECCCCc
Q 001146 766 LMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~~~ 781 (1140)
+|+ +|+++.+|+.++
T Consensus 679 Vl~-~Gkiv~~gs~~e 693 (709)
T COG2274 679 VLD-QGKIVEQGSHEE 693 (709)
T ss_pred Ecc-CCceeccCCHHH
Confidence 998 489999999743
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=371.83 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 589999999874 24589999999999999999999999999999999998774 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.+|||+|++.++|++||.||+.|+...+ ..+..+.+++++++++.++|.+..+... ++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986543 2344555667899999999998877653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 78899999999985 89999999
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 74
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=331.14 Aligned_cols=214 Identities=26% Similarity=0.402 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++..| ++.++|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 6788888777 346799999999999999999999999999999999998773 4899999999986
Q ss_pred c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 001146 622 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LSg 696 (1140)
. +..+..++||||....||.|||+|||..++..+.. ++..+..++++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23567899999999999999999999988655422 1111222667777764 5555566543 5999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+++||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 779999999876 57889999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=364.87 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.++|++|++.+++.+||+||+.+..... ..+..+.+++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234677999999999999999999998755432 1233333455778999999988777764 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67889999999985 89999998
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=348.44 Aligned_cols=213 Identities=29% Similarity=0.382 Sum_probs=181.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 46789998874 24589999999999999999999999999999999998764 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345679999999999999999999998754431 223334456789999999987767653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998876 899999999986 67888999999985 89999887
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 5
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=347.41 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 3678999887411 0114689999999999999999999999999999999998764 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. .++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..+..+ +.||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35679999999999999999999988754331 223334456789999999987766653 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 779 (1140)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ +|+++..++.
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999864 4899999999986 57889999999985 4899988775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=372.44 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++|++|++.++|.+||+||+.|....+ ....++.+++++++++.++|.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 123467999999999999999999999876543 1234445567899999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 74
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=345.06 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. ..++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.+++.+..++. ++.||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999999999999999988654432 22333445678899999998766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999986 57788999999985 7887754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=368.59 Aligned_cols=204 Identities=25% Similarity=0.303 Sum_probs=179.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cc----cceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 637 (1140)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 446689999999999999999999999999999999998874 589999999987532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
++|.+||+||+.|..... ..+.+++++++.++++.++|.+..++.. ..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2345556677899999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999998754 899999999986 68899999999985 8999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=367.25 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=186.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. .+++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6789999998511 1135699999999999999999999999999999999998764 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.++|.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999876543 2234444566889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 67889999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
+.|+++
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=345.16 Aligned_cols=211 Identities=26% Similarity=0.398 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 23457999999999888999999998865432 1233344456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 67788999999985 7988876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=364.00 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=177.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 643 (1140)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35689999999999999999999999999999999998764 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765442 233334456789999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 724 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 68889999999985 899999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=350.11 Aligned_cols=216 Identities=26% Similarity=0.361 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 35788988874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
.. . .++.++|++|++.+++.+||+||+.+......... ...++.++.++++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----
Confidence 31 1 23568999999999999999999988754321110 01233445678999999998766665
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~- 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ- 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 67788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 899999875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=349.13 Aligned_cols=217 Identities=27% Similarity=0.396 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999999884 24589999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.++.++++++.+++.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245799999999999899999999886543211 00122333456788999999987666653 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999998765 899999999986 57888999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
++
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 86
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=371.02 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 378999999884 24689999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.++||+|++.+++.+||+||+.++...+.. .... ++.+++++++++.+++.+..++.+ ++||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~-----~~LS 141 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPV-----TSLS 141 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 43 34567899999999998899999999886432110 0112 233456889999999998877754 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.++|||+++|++ |+++.
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~ 219 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRA 219 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 67899999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 220 ~G~~~e 225 (402)
T PRK09536 220 AGPPAD 225 (402)
T ss_pred ecCHHH
Confidence 998753
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.70 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=181.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 640 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 640 (1140)
+..++++|||+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|+++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 567899999999999999999999999999999999999884 489999999987642 23456788899999999
Q ss_pred CCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 001146 641 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~ 711 (1140)
.|||.||+..++..+. +.. .+.++-.++..++++.+||.+.+|...| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1234445677899999999999999865 5999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 712 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|++|+||||.+||.+....++.+.|+++.++ |.||+++.|+++ -++.+||||++|+. |+++..|+|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHH
Confidence 9999999999999999999999999999874 699999999998 58999999999985 89999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=345.36 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 620 (1140)
++|+||++.++... ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 57999999986311 135689999999999999999999999999999999998651 13489999999887
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.....++.++|++|++.+++.+||+||+.+......+.....+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999999999999999998765432221122222334455 88888887766654 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999985468899999999985 8998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=345.63 Aligned_cols=215 Identities=27% Similarity=0.417 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5789999988521 0112589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++.++.++++++.+++.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234577999999999999999999998765433 1233344566789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999998777999999999986 67889999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=347.89 Aligned_cols=214 Identities=26% Similarity=0.365 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. . .++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ +.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23568999999999999999999988653321 223334456788999999987766653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999998877999999999986 68899999999985 8999998
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=359.10 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.+++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998776542 223334456789999999998877764 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+++|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.++|||+++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999986 68899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
.+
T Consensus 216 ~~ 217 (301)
T TIGR03522 216 LD 217 (301)
T ss_pred HH
Confidence 63
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=347.35 Aligned_cols=215 Identities=23% Similarity=0.281 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC-----cCceEEEEEEEc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 616 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~-----~~~~~~G~i~~~ 616 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 36789998874 235899999999999999999999999999999999987 4 458999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987642 23456799999998888 7999999988754331 11222234567889999999876555320 2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999876 99999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=345.34 Aligned_cols=209 Identities=28% Similarity=0.401 Sum_probs=174.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 4678999988421 0114689999999999999999999999999999999998763 4899999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... .++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..+..+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24579999999999999999999998765431 223334456789999999987766653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999986 45 48999999986 55
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=326.47 Aligned_cols=213 Identities=24% Similarity=0.396 Sum_probs=192.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+++++|+.++ +++.+++|+||+++||++.+++|||||||||++++|.|...+ .+|.|.++|.++
T Consensus 2 ~L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 36777777654 567899999999999999999999999999999999998874 589999999998
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
+.. .+.+|||.|.+.-++|.+||.|.|.|-+.++ ..+.++.++.++.+++.+++......++ ++||.|++|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 653 4567999999999999999999999999987 4566677778899999999998877764 679999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
++.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|.+|+.
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999999999999999999999999999997 79999999999985 899999997
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=341.59 Aligned_cols=207 Identities=29% Similarity=0.396 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. .. +++++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2345679999999999999999999988654321 11 234678899999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |+++..|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998777899999999986 57788999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=350.83 Aligned_cols=218 Identities=26% Similarity=0.314 Sum_probs=179.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 357889888741 14589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+||+||+.+...... ......+..++.++++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR----- 141 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----
Confidence 2 1245679999999999999999999987532110 00111122345578899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 221 -G~i~~~~~~~ 230 (241)
T cd03256 221 -GRIVFDGPPA 230 (241)
T ss_pred -CEEEeecCHH
Confidence 8999999864
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=344.53 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 467899988741 114589999999999999999999999999999999998763 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999999989999999988654332 223333456788999999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.+.+|++++|++ |+++..|++
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999986 57788999999985 899998876
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 217 ~ 217 (220)
T cd03263 217 Q 217 (220)
T ss_pred H
Confidence 3
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=312.35 Aligned_cols=215 Identities=26% Similarity=0.390 Sum_probs=186.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+..++++.+|+.. ...+|+|||++|.+||.++++||||||||||||+++|..+| ..|+|.+||.+++
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEecc
Confidence 4556777777532 23489999999999999999999999999999999999874 5899999999886
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ..-|.|+|++.++|.+||.||+.|+.+++ ..++.+|++++.+.+..+||.+..+..+ -+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHH
Confidence 432 23489999999999999999999999887 4678889999999999999998887653 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecC-CEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g-g~~~~~g~~ 779 (1140)
+.|||||+.+|++|+||||+++||.-++++++++|-++. +.|+.++++||+.. +..-+++|+++|+-+ |+++..=|+
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999998876 45999999999987 566678999999843 688877666
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 3
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=354.78 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=174.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---c----ccceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 637 (1140)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 456799999999999999999999999999999999998764 489999999876421 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+++.+||+||+.+..... .....+.++.++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999875432 1223334456788999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 899999999986 57889999999985 8999999763
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=346.38 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5789999887421 0113689999999999999999999999999999999998764 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 235679999999999999999999988654331 233334456789999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=354.54 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||++.|+... ...+.+|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 378999999985210 0124689999999999999999999999999999999998764 489999999886
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCC
Q 001146 621 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVS 692 (1140)
Q Consensus 621 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~ 692 (1140)
.. ...++.+|||+|++. .+...||+||+.|..... ..+.++.+++++++++.+||. +..++. ++
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PF 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cc
Confidence 43 234678999999863 333579999999865432 234455556788999999996 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57788999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13637 222 KCELQGTPR 230 (287)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=341.23 Aligned_cols=205 Identities=25% Similarity=0.334 Sum_probs=174.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 67899999873 123589999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334456789999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999999999999999999999999999998777999999999986 67788999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=341.85 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 357899988741 13589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ +.||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 2 1245679999999999999999999998754331 233334456789999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.+|++++|++ |+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 57778999999985 55
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=340.72 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=170.0
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 623 (1140)
++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++...
T Consensus 2 ~~~l~~~~~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYKK------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeCC------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhH
Confidence 5688887741 13589999999999999999999999999999999998764 489999999876444
Q ss_pred cccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 001146 624 TFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 702 (1140)
Q Consensus 624 ~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv 702 (1140)
..++.++|++|++. .+..+|++||+.+..... . . .++.++++++.+++.+..++.+ +.||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 45567999999974 344679999998764322 1 1 1234788999999988777653 57999999999
Q ss_pred HHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 703 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 703 ~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999999999999999999998777999999999986 57788999999985 6764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=345.34 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57899999874 2458999999999999999999999999999999999876 34899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.++++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999999999999999999987642111 1233344456789999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998777999999999986 57788999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9863
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.79 Aligned_cols=226 Identities=26% Similarity=0.384 Sum_probs=186.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+.+|++|+.. ++.+|++||++++|||++||+||||||||||||.|+|...++ +|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 57889999874 456899999999999999999999999999999999987743 899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ....+..+..+|+..+-.-.||+|-+.++..-... ..+.++..+..+++++..++.+.+.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 34456678999998876668999999998543211 1222344456788999999988877653 5799999
Q ss_pred HHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 699 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 699 rqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||.+||.|+. ++++||||||||+||...+..++++.|+++++|..|+++.||++. ...++||+++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999986 456999999999999999999999999999999999999999984 6789999999995 89
Q ss_pred EEEECCCCcc--hhHHHHHH
Q 001146 773 EIYVGPLGRH--SCHLISYF 790 (1140)
Q Consensus 773 ~~~~g~~~~~--~~~~~~~f 790 (1140)
++..|++.+. .+.+...|
T Consensus 219 v~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 219 VIASGSPQDVLTDETLERVY 238 (259)
T ss_pred EeecCCHHHhcCHHHHHHHh
Confidence 9999998642 23344444
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=341.94 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+.. ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 38899999988521 012468999999999999999999999999999999999876 3589999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.... . ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..+.. .+.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 2 256999999999999999999999865432 122334445688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++. .+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~-~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAK-RMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 344 4689999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=351.70 Aligned_cols=215 Identities=24% Similarity=0.331 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4789999998841 23489999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. .++..||.||+.|..... ..+.++.+++++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 234567999999863 445689999999864322 2233444456789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+||+++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=349.85 Aligned_cols=218 Identities=24% Similarity=0.276 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 578899988730 23589999999999999999999999999999999998763 4899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+||+||+.+...... .......+.+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999986432100 00011123345678899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 8999988864
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=345.36 Aligned_cols=212 Identities=26% Similarity=0.356 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67899998874 23589999999999999999999999999999999998764 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. .++.++|++|++.+++.+||+||+.+....+ .....+.++.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345899999999999999999998865432 123333445688999999998766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 779 (1140)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 67889999999984 5899988765
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=355.22 Aligned_cols=219 Identities=25% Similarity=0.303 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+... .....+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 78999999985210 0123589999999999999999999999999999999998764 4799999886531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 001146 622 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673 (1140)
Q Consensus 622 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 673 (1140)
....++.+|||+|++ ..+...||+||+.|+.... ....++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999999875432 234445556789999
Q ss_pred HHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 674 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 674 ~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 556654 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 753 PSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 753 ~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
++ ++.+.+||+++|++ |++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 86 57889999999985 8999999874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=345.89 Aligned_cols=214 Identities=27% Similarity=0.384 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 357899988741 13589999999999999999999999999999999998764 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+||+||+.+....+ ....++.++.++++++.+++.+ ..+.. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567899999999999999999998865433 1233344456789999999985 55544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57889999999985 89999
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 9875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=342.53 Aligned_cols=211 Identities=28% Similarity=0.424 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 46789988774 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.++.++++++.+ ++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24569999999999999999999988754321 112234466777777 466555554 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999998777899999999986 57889999999985 899998
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=346.56 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 78999999884 23589999999999999999999999999999999998764 4799999998753
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235679999999999999999999987543111 122334445678899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999998877999999999986 57788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=349.89 Aligned_cols=216 Identities=19% Similarity=0.289 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 489999999874 24589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... ..++.++|++|++.+++.+||.||+.+...... ..+.+..++.+.++++.+++.+..+..+ +.|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 135679999999999999999999988643211 1223333456788899999987777653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 67888999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.02 Aligned_cols=215 Identities=26% Similarity=0.428 Sum_probs=181.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+..++.+|++|.|+. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4566777899999862 23689999999999999999999999999999999999874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGL 688 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~ 688 (1140)
.+..+ ..++++++||+|++.+++ -|++||+.++. ++.++++ +.++++..++.+. .|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 87643 568999999999999887 79999999863 2233333 5666666666543 4566665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. .++|||||+|||++||||+++++++++||||++||.++++.+++.|.++++ ++|+|++||++. ....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4 468999999999999999999999999999999999999999999999876 599999999975 567789999998
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++..|..++
T Consensus 529 ~-G~l~~~g~~~~ 540 (559)
T COG4988 529 N-GRLVEQGTHEE 540 (559)
T ss_pred C-CceeccCCHHH
Confidence 5 89999998754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=360.14 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=181.0
Q ss_pred CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc
Q 001146 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 616 (1140)
..+..|+|+||+++|. ++++||+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|.+|
T Consensus 347 ~~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred cCCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3456799999999995 23459999999999999999999999999999999998765 37999999
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccc
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLV 686 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 686 (1140)
|.++++ +.+|+.+||||||..+|. -||.+|+.|+. +..+.++ +-++.+..+++ +-.+|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 998754 568899999999888875 79999999863 2334433 34444554444 4556778
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
|..|. .|||||||||+||||++.||+|+++|||||.||++++.++++.+++. ..|+|+|++.|+.+ ....||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEE
Confidence 87764 59999999999999999999999999999999999999999999984 45999999999975 6889999999
Q ss_pred EecCCEEEEECCCCc
Q 001146 767 MKRGGQEIYVGPLGR 781 (1140)
Q Consensus 767 l~~gg~~~~~g~~~~ 781 (1140)
|++ |++...|+.++
T Consensus 558 l~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 558 LDN-GTVKEYGTHSE 571 (591)
T ss_pred EEC-CeeEEeccHHH
Confidence 996 79999998743
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=353.40 Aligned_cols=218 Identities=25% Similarity=0.348 Sum_probs=181.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+... ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 68999999995210 0113589999999999999999999999999999999998764 4899999998863
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23467899999986 4554 69999999876432 233455566788999999995 355544 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.|||+++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=355.60 Aligned_cols=230 Identities=21% Similarity=0.236 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|+............+...+|+||||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 489999999986321100000011235799999999999999999999999999999999998764 489999999886
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... ..++.++||+|++ .++|.+||.||+.+...... ...++++.+++++++++.+++. +..++. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 58889999999988654321 1234555566788999999994 344543 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++|||||||||+|||||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++|||++ .+.+++||+++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 899999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=337.96 Aligned_cols=209 Identities=33% Similarity=0.484 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++ ++++|+|+||++++| +++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 46889998874 235899999999999 9999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345679999999999999999999988654431 222333456788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++. .+.+.+||+++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999986 56788999999985 7888765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=339.38 Aligned_cols=209 Identities=23% Similarity=0.310 Sum_probs=176.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67899999883 123589999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++. .+.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 14567999999998888999999998865432 123334445678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999998777899999999986 57788999999985 6753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=351.94 Aligned_cols=218 Identities=26% Similarity=0.302 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+... ...+++|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 78999999995210 0124589999999999999999999999999999999998764 4899999998763
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875432 223444445688999999996 555654 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|++
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~- 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK- 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 8999999863
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=344.73 Aligned_cols=216 Identities=27% Similarity=0.375 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899998874 24589999999999999999999999999999999998763 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..++.++|++|++.+++.+||+||+.+....+. ..+.++.+..++++++.+++.+..+.. .+.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCH
Confidence 431 235679999999999999999999987643321 122334455678899999998766554 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|+|+++|++. ++.+.+|++++|++ |+++..
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999998777999999999985 68889999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 219 ~~~~ 222 (241)
T PRK10895 219 GTPT 222 (241)
T ss_pred CCHH
Confidence 8864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=354.76 Aligned_cols=219 Identities=25% Similarity=0.338 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+... ...+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 589999999995210 0123589999999999999999999999999999999998774 489999999765
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc
Q 001146 621 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679 (1140)
Q Consensus 621 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 679 (1140)
.. ...++.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 4555 59999998875322 223444445678999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHH
Q 001146 680 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 758 (1140)
Q Consensus 680 -~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~ 758 (1140)
+..+.. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 577
Q ss_pred HhhceEEEEecCCEEEEECCCC
Q 001146 759 EAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 759 ~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+.+|++++|++ |+++..|+++
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 89999999985 8999999864
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=343.76 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 618 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67899999884 235899999999999999999999999999999999987632 12799999998
Q ss_pred ccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 001146 619 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~~ 689 (1140)
++.. ...++.++|++|++.+++ +|++||+.+....+. ....++.++.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754331 122334445678899999997 444443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 589999999986 57789999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=337.96 Aligned_cols=207 Identities=24% Similarity=0.349 Sum_probs=175.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 36789998884 23589999999999999999999999999999999998763 4899999998763
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..+..+ +.|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 2345779999999999999999999988642111 1233344456788999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877899999999986 67789999999985 55
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=350.36 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 48899999998521 123589999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++ ..++..||+||+.|..... ..+.++.+++++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3667789999999875432 2344445566889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 45 67999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99863
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=332.21 Aligned_cols=230 Identities=23% Similarity=0.268 Sum_probs=196.6
Q ss_pred cEEEEEeEEEEEecCchhh----hcccc-------cCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce
Q 001146 540 HSLTFDEVVYSVDMPEEMK----VQGVL-------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 608 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~ 608 (1140)
..++++||+.-....+..- .++.. .+-..-++|+|++++.||+..|||-||||||||+++|.++.. +
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--p 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--P 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--C
Confidence 3578888876554332211 11111 133457899999999999999999999999999999999887 4
Q ss_pred EEEEEEEcCcccCc------cc-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 001146 609 ITGNITISGYPKKQ------ET-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 609 ~~G~i~~~g~~~~~------~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 681 (1140)
..|+|.++|.++.. +. .++.+++|+|.-.++|+.||.||..|+..++ ..++++|+++..+.++.+||.+.
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998643 12 3467899999999999999999999998776 46778899999999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 760 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~ 760 (1140)
.+.+ +++|||||||||.+||||+.+|+|||+|||+|+|||--+.++++.|.++.++ ++|||++|||++ +.+++
T Consensus 158 ~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 9887 4689999999999999999999999999999999999999999999998754 899999999997 78999
Q ss_pred hceEEEEecCCEEEEECCCCc
Q 001146 761 FDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 761 ~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
-|||.+|+ +|+++..|++++
T Consensus 232 G~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 232 GDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred cceEEEec-CCeEEEeCCHHH
Confidence 99999998 589999999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.58 Aligned_cols=212 Identities=26% Similarity=0.382 Sum_probs=178.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 57889998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357899999998888999999998765432 1233334456788999999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|+++|+++ ++. .+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999986 454 5999999985 89999887
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=340.32 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=174.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 6789999988421 0113589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
. ...++.++|++|++ .+++.+||+||+.+....... ....+..+...+++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 466789999999886543321 111111122235788889985 445544 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999986 56778999999985 7
Q ss_pred EEEEEC
Q 001146 772 QEIYVG 777 (1140)
Q Consensus 772 ~~~~~g 777 (1140)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=344.69 Aligned_cols=214 Identities=20% Similarity=0.262 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 489999999884 24589999999999999999999999999999999998763 479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 001146 621 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR- 682 (1140)
Q Consensus 621 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 682 (1140)
.. ..+++.++|++|++.+++.+|++||+.+... .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999999999999999987542 21 123344456678999999997653
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
+.. .+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 433 3579999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred eEEEEecCCEEEEECCC
Q 001146 763 ELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~ 779 (1140)
|+++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899999885
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=342.87 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 489999999884 23589999999999999999999999999999999998764 489999998765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ..++.++|++|++.+++.+||+||+.+... . ..++.++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987521 0 1124567899999998766655 3579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 57788999999985 799988875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=350.09 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378999999995210 0123589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 001146 621 KQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 690 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~ 690 (1140)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++.+++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23567899999986 3554 59999999875432 233444556688999999996 555554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+||+++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 4899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 222 -G~i~~~g~~~ 231 (286)
T PRK13646 222 -GSIVSQTSPK 231 (286)
T ss_pred -CEEEEECCHH
Confidence 8999999863
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=348.42 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 4899999999841 23589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
.. ..+++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.++|.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 235678999999873 234579999998865322 223444445688999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.|||+++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 56778999999985 799
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
++.|+++
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=337.06 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=173.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5789999988421 1124689999999999999999999999999999999998764 4899999998764
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..+..+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 569999999999989999999988654321 222333456788999999987666653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998754 899999999986 44 55799999985 676
Q ss_pred E
Q 001146 774 I 774 (1140)
Q Consensus 774 ~ 774 (1140)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.39 Aligned_cols=215 Identities=23% Similarity=0.320 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 378999999884 23589999999999999999999999999999999998763 489999999875
Q ss_pred C---------cccccceEEEeccCCCCCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 621 K---------QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 621 ~---------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ....++.++|++|++.+++.+|+.||+.+. .... ....++..+.++++++.+|+.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 012456799999999999999999999753 2221 1223333456788999999987666653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998777999999999986 56788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+.+
T Consensus 217 g~i~~~~~~~ 226 (242)
T PRK11124 217 GHIVEQGDAS 226 (242)
T ss_pred CEEEEeCCHH
Confidence 8999998863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=359.74 Aligned_cols=204 Identities=24% Similarity=0.295 Sum_probs=176.2
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---c----ccceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 637 (1140)
+...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... . .++.++|++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345689999999999999999999999999999999998764 489999999886431 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+++.+||+||+.+....+. ...++.+++++++++.++|.+..+..+ +.||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233444566889999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999986 67889999999985 8999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=335.83 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=169.6
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccC
Confidence 5678877741 114689999999999999999999999999999999998763 48999999987642
Q ss_pred --ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 623 --ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
...++.++|++|++. .++.+|++||+.+....+ .....+.++.++++++.+++.+..+..+ +.||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHH
Confidence 234567999999974 366789999998865432 1223333456788999999987666553 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999998877999999999986 67788999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=337.10 Aligned_cols=209 Identities=26% Similarity=0.414 Sum_probs=170.5
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 623 (1140)
++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--
Confidence 567777773 24589999999999999999999999999999999998764 4899999998754
Q ss_pred cccceEEEeccCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 624 TFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 624 ~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
..++.++|++|++.+. +.+||+||+.+....... .....++.+++++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3456799999998763 338999999875432110 00111223456788999999987666653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ | +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999999999999999999999998777999999999986 57788999999974 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=347.82 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 478999999884110 0124589999999999999999999999999999999998774 589999999876
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQ-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
.. ...++.++|++|++. .+..+||.||+.+..... ....++.+++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 224567999999862 233589999998865432 223444456688999999996 566655 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 67889999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=340.10 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 488999999874 13589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~LS 695 (1140)
... ..++.++|++|++.+++.+||+||+.+..... ..++.++.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23567999999999999999999998864221 1122233456777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999986 68899999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=346.24 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPD------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCC------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 678999998841 23489999999999999999999999999999999998764 4899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++. .+...|+.||+.+..... ..+.++.++.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865432 2234444556888999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998877999999999986 45 67999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=346.78 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 789999998841 1248999999999999999999999999999999999876 35899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..++.++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 334589999998765422 2334444556789999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999998765 899999999986 67789999999985 799999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=342.83 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 488999999874 24589999999999999999999999999999999998763 589999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCcccccc
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 684 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~~~l~~~~~~ 684 (1140)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999986431110 000 111233457788999999876666
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhce
Q 001146 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 685 ~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.+ +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 579999999999999999999999999999999999999999999998765 899999999986 67789999
Q ss_pred EEEEecCCEEEEECCCC
Q 001146 764 LFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~~ 780 (1140)
+++|++ |++++.|+++
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999999864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=334.31 Aligned_cols=210 Identities=25% Similarity=0.350 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 35788888774 24589999999999999999999999999999999998763 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ++.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 332 3568999999998999999999987654331 11 124678899999987766653 5699999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |+++..|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999999999999999999999999999999998777999999999986 57789999999985 89999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=355.11 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+|+|+.. +.++|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 79999999999742 34689999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~ 690 (1140)
.. ..+++.+++++|...+|. -|+|+||..+. ++.++|+ +.++++.+||++.. |+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 346778999999877765 79999998763 3445544 56778888877543 44566544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.++ |+|+|++||+.. -.+.||||++|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 67999999999999999999999999999999999999999999988654 999999999986 3788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 8999999875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=342.33 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 68899999884 24589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++.+||+||+.+...... ...++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2345678999999888888999999988643211 112223345788999999987666653 5799999
Q ss_pred HHHHHHHHHHh------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 699 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 699 rqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57789999999985 7
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999998864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=339.57 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46789999884 24589999999999999999999999999999999998421145899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. . .+..++|++|++.+++.+|++|++.+....... . ..+.++..+.++++++.+++. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 233489999999999999999999876432211 0 112233345678899999997 34454321 2
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 56666 799999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=339.48 Aligned_cols=218 Identities=23% Similarity=0.276 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378999999874 235899999999999999999999999999999999986531 3589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPG 690 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~g~~~ 690 (1140)
.++.. ...++.++|++|++.+++.+||+||+.+....+.. .....+.++.++++++.+++.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888899999999986543211 11223334567889999998542 3332
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++ ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999986 57789999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 8999999863
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=341.14 Aligned_cols=214 Identities=24% Similarity=0.292 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999999874 23589999999999999999999999999999999998653 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+ ....++.++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 134567999999988888 89999999875432 1233333455788999998842 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|++
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899999986
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=354.88 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=177.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc----ccCc---c---cc-cceEEEec
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---E---TF-ARISGYCE 633 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~~v~ 633 (1140)
+...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|. ++.. . .. ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 567899999999999999999999999999999999998774 4899999996 2211 1 12 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 001146 634 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713 (1140)
Q Consensus 634 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ 713 (1140)
|++.++|.+||+||+.++...+ ....++++++++++++.+||.+..+... .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2344556677899999999988777654 5699999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++.+++||+++|++ |+++..|+++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999764 899999999986 67899999999985 8999999874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=340.94 Aligned_cols=214 Identities=22% Similarity=0.297 Sum_probs=180.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46889999884 13589999999999999999999999999999999998764 4899999998753
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 001146 622 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 622 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 685 (1140)
. ...++.++|++|++.+++..|+.||+.++.... .....++.++.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 124567999999999999999999998754211 1123334445678899999998766654
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 577889999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=340.27 Aligned_cols=216 Identities=21% Similarity=0.234 Sum_probs=177.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 616 (1140)
.-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 6 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 6 AIIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred ceEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3589999999884 134899999999999999999999999999999999986642 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++ +||+||+.+...... .......++.++++++.+++. +..++.
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 147 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN-- 147 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC--
Confidence 987531 234667999999988875 899999998754321 112233345677888888873 233443
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|+++ ++.+.+||+++|
T Consensus 148 ---~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l 222 (254)
T PRK14273 148 ---ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFF 222 (254)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 46799999999999999999999999999999999999999999999986 4799999999986 577889999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..|++
T Consensus 223 ~~-G~i~~~g~~ 233 (254)
T PRK14273 223 LN-GCIEEESST 233 (254)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999985
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=345.24 Aligned_cols=216 Identities=26% Similarity=0.305 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3889999998841 123589999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++ ..++..||.||+.+..... ....++.+++++++++.++|.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 23456799999997 3666789999998865432 1233444566889999999988777654 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 454 5999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=339.68 Aligned_cols=218 Identities=24% Similarity=0.263 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478999999884 135899999999999999999999999999999999987642 3489999999
Q ss_pred cccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8764 123456799999999999999999999886543211 1122333445788889888753 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5788899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 223 ~-G~i~~~~~~~ 233 (253)
T PRK14267 223 L-GKLIEVGPTR 233 (253)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=327.42 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
.+.|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999999732 13457999999999999999999999999999999999987632 468999999987
Q ss_pred cCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 620 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234667999999999999999999998753210 1222 3569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777776654468889999999985 898876
Q ss_pred C
Q 001146 777 G 777 (1140)
Q Consensus 777 g 777 (1140)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=342.12 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 78899999874 24589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|+.||+.++... ....... +..++.++++++.+++.+..++. .+.|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRR-----LTDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCC-----cccCCH
Confidence 2 23456799999999888889999999875311 0001111 22344578899999998776765 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++..
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 9999999999999999999999999999999999999999998777999999999986 67889999999985 799999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 220 ~~~~ 223 (255)
T PRK11231 220 GTPE 223 (255)
T ss_pred cCHH
Confidence 9865
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=331.91 Aligned_cols=209 Identities=24% Similarity=0.333 Sum_probs=173.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGE-------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCC-------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 367899988741 11 399999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3 1234679999999999999999999987543211 11 1223446789999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=347.91 Aligned_cols=224 Identities=18% Similarity=0.231 Sum_probs=182.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-c-eEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 619 (1140)
++++|+++.|... .+...+|+||||+|++||++||+||||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7899999998521 1225699999999999999999999999999999999997653 1 358999999998
Q ss_pred cCc---cc----ccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KKQ---ET----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+.. .. .++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+..+... ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CC
Confidence 643 11 224699999997 47889999998876544321 1234455667889999999975322111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.++|||||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ .|.|+|++||+++ .+.+++||+++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999976 4899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 230 -G~ive~g~~~ 239 (326)
T PRK11022 230 -GQVVETGKAH 239 (326)
T ss_pred -CEEEEECCHH
Confidence 8999999864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=343.39 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 67899999884 13489999999999999999999999999999999998764 4899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.. +...|+.||+.+..... ....++.++.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999998753 34568999998864432 123333445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=342.18 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
-++++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478999999874 245899999999999999999999999999999999987643 236999999987
Q ss_pred cCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 001146 620 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 686 (1140)
Q Consensus 620 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 686 (1140)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+.+++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345789999999999999999999875421100 00112233456789999999987666653
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999999975 4899999999986 5788999999
Q ss_pred EEecCCEEEEECCCC
Q 001146 766 LMKRGGQEIYVGPLG 780 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~~ 780 (1140)
+|++ |++++.|+++
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7999999875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=298.62 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=177.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+.++++..+.. ..+...||++|++.|++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchh
Confidence 566666655432 23567899999999999999999999999999999999998774 4899999999864
Q ss_pred c-------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. .-..+++|+|+|.-.+.|+||..||+...+.++.... .+......+.++.+||.+..+.. +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 3 1134689999999999999999999999888775321 22234467889999998766654 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+. +.|.|.|++||||. +...|||.+-|.. |++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-cee
Confidence 9999999999999999999999999999999999999999998886 45999999999985 6888999999985 787
Q ss_pred EE
Q 001146 774 IY 775 (1140)
Q Consensus 774 ~~ 775 (1140)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 63
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=335.78 Aligned_cols=212 Identities=25% Similarity=0.314 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 46789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. .. .++..+++++.++ +.+..+.. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124579999999999999999999988754321 11 1223466777776 45544544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|+.++
T Consensus 213 ~~~~~~ 218 (230)
T TIGR03410 213 SGAGDE 218 (230)
T ss_pred ECCHHH
Confidence 998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=340.53 Aligned_cols=224 Identities=23% Similarity=0.297 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+.....+ ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 78899999985210000 01235699999999999999999999999999999999998764 5899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. ..++.++|++|++ .+.+.+||+||+.+..... .....+..++.++++++.+++. +..+.. ..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 4667899999998754321 1122333345678899999995 555554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57778999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=347.58 Aligned_cols=226 Identities=23% Similarity=0.245 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+...... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 489999999986321100 001235699999999999999999999999999999999998764 489999999876
Q ss_pred Cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 621 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
.. ..+++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 43 13456799999997 58889999999987654321 2344455667899999999963 44544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++||+++ .+.+++|++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 999999999986 56778999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=336.56 Aligned_cols=216 Identities=25% Similarity=0.316 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 67899998874 23589999999999999999999999999999999998764 4899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+++.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1235699999999999999999999886432100 0 0112233456789999999987766653 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999866 799999999986 57789999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99998764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=342.64 Aligned_cols=218 Identities=27% Similarity=0.374 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 489999999884 24589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321100 00111223345788999999987666653 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 67789999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 99864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=329.88 Aligned_cols=225 Identities=23% Similarity=0.306 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-C-c-eEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 618 (1140)
++.+|++.++... .+..++++||||++++||++||+|.|||||||+.+.|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5788999888643 134579999999999999999999999999999999999765 2 2 46789999999
Q ss_pred ccCc---c---c-ccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ---E---T-FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++-. + . ..+.+++++|++ .+.|.+||.+.+.-......... .+++.++++.++++.+|+.+........
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 6532 2 1 235799999996 67888999988876554332111 3445566788999999998754333223
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.++||||.+|.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999997 5889999999999
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
. |++|..|+.+
T Consensus 229 a-G~iVE~g~~~ 239 (316)
T COG0444 229 A-GRIVEEGPVE 239 (316)
T ss_pred C-cEEEEeCCHH
Confidence 5 8999999974
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=337.17 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=176.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC---cCceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 617 (1140)
.++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478999999874 245899999999999999999999999999999999952 2212479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+..+.... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999988754331 11222334557889999998642211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 57789999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
+++.|++
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999986
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=347.38 Aligned_cols=225 Identities=19% Similarity=0.284 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
-++++|+++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48999999988531 12356999999999999999999999999999999999987642 137999999998
Q ss_pred cCc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KKQ---ET---FA-RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~~---~~---~~-~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+.. .. ++ +.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 22 4799999998 68899999999987654321 2344455567888999999975432221 23
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.++||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+++||+++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 56788999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 8999999864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=337.83 Aligned_cols=217 Identities=19% Similarity=0.253 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478999999884 235899999999999999999999999999999999986532 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999999999999999988754321 1123333456788899998842 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 689999999986 5778999999997
Q ss_pred -----cCCEEEEECCC
Q 001146 769 -----RGGQEIYVGPL 779 (1140)
Q Consensus 769 -----~gg~~~~~g~~ 779 (1140)
+.|++++.|++
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 25899999986
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=323.26 Aligned_cols=190 Identities=58% Similarity=0.938 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+.. .+++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999998521 012468999999999999999999999999999999999753224589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhH
Confidence 5 34566799999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877799999999998644678899999998548998875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=337.87 Aligned_cols=221 Identities=23% Similarity=0.307 Sum_probs=178.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~ 615 (1140)
|..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34589999999884 1358999999999999999999999999999999999743 1 135899999
Q ss_pred cCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|+++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987642 234567999999988888 5999999987543211 1222334567888999888542111111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 799999999986 57789999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 899999875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=341.51 Aligned_cols=215 Identities=27% Similarity=0.343 Sum_probs=180.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 678999998841 23489999999999999999999999999999999998763 4899999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++. .+...||.||+.+..... ....++.++++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999863 333479999998764321 2234444556789999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=338.25 Aligned_cols=218 Identities=21% Similarity=0.263 Sum_probs=179.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEE
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIT 614 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~ 614 (1140)
....++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 455699999999884 1358999999999999999999999999999999999864 2 13589999
Q ss_pred EcCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 001146 615 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSL 685 (1140)
Q Consensus 615 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 685 (1140)
++|.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234677999999988887 899999988654321 1233334456788999998743 22332
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 35799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCCEEEEECCC
Q 001146 766 LMKRGGQEIYVGPL 779 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~ 779 (1140)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=343.05 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+... ...+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378999999985210 0113589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 001146 621 KQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPG 690 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~ 690 (1140)
.. ...++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 23456799999986 3444 69999998865432 1233334456788999999963 44544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (280)
T PRK13649 221 GKLVLSGKPK 230 (280)
T ss_pred CEEEEeCCHH
Confidence 8999998863
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=383.41 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=177.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999998663 1245899999999999999999999999999999999987 4 37999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+.+ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ ++++++..+++ +-.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 457889999999999887 69999999852 2334433 34445544443 3457888876
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||++||+||+||||||+||+++++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 5 4699999999999999999999999999999999999999999999875 5899999999985 5678999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=340.27 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 67899999874 24589999999999999999999999999999999998763 4899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
. ...++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 23345689999998777889999999875311000 00111223346788999999987766653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 67789999999985 7999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+.+
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=331.91 Aligned_cols=213 Identities=26% Similarity=0.371 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48899999988521 0113589999999999999999999999999999999998764 489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 257999999999999999999998865432 1223344566889999999987666653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 44 56999999985 78
Q ss_pred EEE
Q 001146 773 EIY 775 (1140)
Q Consensus 773 ~~~ 775 (1140)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=334.53 Aligned_cols=201 Identities=29% Similarity=0.415 Sum_probs=169.9
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEec-cCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 641 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 641 (1140)
+.+++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 456799999999999999999999999999999999998764 48999999986432 23456789997 55677888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
+|++||+.+....+ ....++.++.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865433 1223334456788999999988777654 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 722 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 7888765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=335.03 Aligned_cols=222 Identities=21% Similarity=0.280 Sum_probs=180.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~ 616 (1140)
+.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 4589999999884 2358999999999999999999999999999999999864 21 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+....... ...
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2346779999999999999999999987644321 11223334457888999998542111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++ |
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-G 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 689999999986 67789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=340.38 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5899999998841 124589999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+..++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235677999999973 567789999998865422 1233444556789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|+|+++|+++ ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 44 47999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=340.12 Aligned_cols=218 Identities=21% Similarity=0.289 Sum_probs=182.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 4689999999984 24589999999999999999999999999999999998764 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
+.. ...++.++|++|++.+++.+|++||+.+......+ .... +..++.++++++.+++.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 144 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQS-----VDTL 144 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCC-----cccC
Confidence 532 23345799999999998889999999875211100 0111 22344678899999998766665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 222 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKI 222 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 68899999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|+++
T Consensus 223 ~~~g~~~ 229 (265)
T PRK10253 223 VAQGAPK 229 (265)
T ss_pred EEeCCHH
Confidence 9999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=371.47 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 388999999884 2458999999999999999999999999999999999876433589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..++.++|++|++.+++.+||+||+.+....+.....+.++.+++++++++.+++.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124669999999999999999999988654321111223334456889999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++.+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 99865
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=328.16 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=175.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~~---------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYEH---------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeCC---------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 367899988741 36799999999999999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|+.||+.+...... .... ..+++++++++.+++.+..++.+ +.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLNA-EQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--CccH-HHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 3 2345679999999999999999999987543211 1111 22345788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 56788999999985 89988874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=346.37 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC--ceEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 619 (1140)
++++|++++|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7899999998632 1235699999999999999999999999999999999997642 2357999999987
Q ss_pred cCc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCccccccccc
Q 001146 620 KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVG 687 (1140)
Q Consensus 620 ~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~g 687 (1140)
+.. .. .++.++||+|++. +.|.+||.+++........... ....+.++.+.++++.+||.+..+..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-- 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM-- 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--
Confidence 642 11 1347999999975 6788999999976432110000 11123345678999999997532211
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
.....+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ .+.+++||+++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1124679999999999999999999999999999999999999999999999864 899999999986 57789999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|++ |+++..|+.+
T Consensus 232 m~~-G~ive~g~~~ 244 (330)
T PRK15093 232 LYC-GQTVETAPSK 244 (330)
T ss_pred EEC-CEEEEECCHH
Confidence 985 8999999864
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.03 Aligned_cols=213 Identities=27% Similarity=0.400 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35889998874 23589999999999999999999999999999999998764 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 235679999999999988999999988654331 223333456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57889999999985 899998874
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.90 Aligned_cols=221 Identities=23% Similarity=0.256 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3699999999884 23589999999999999999999999999999999997653 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+.++.++++++.+++.+....... ...
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 161 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPG 161 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 2345679999999888874 999999987543311 11222334557889999998642111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G 238 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-G 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 789999999986 57788999999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14235 239 NLVEVGDT 246 (267)
T ss_pred EEEEeCCH
Confidence 99999975
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=342.04 Aligned_cols=218 Identities=24% Similarity=0.285 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce-EEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 619 (1140)
.++++|+++.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999998841 12348999999999999999999999999999999999876421 13899999998
Q ss_pred cCc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
... ...++.++|++|++. .++..||+||+.|..... ..+.++.+++++++++.++|.+..+... +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 567799999998764322 2344455566889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 44 57999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 999863
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=384.31 Aligned_cols=216 Identities=28% Similarity=0.429 Sum_probs=180.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
....++|+||+|.|+. ++++|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECC
Confidence 3467999999999962 34689999999999999999999999999999999998874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
.+++. ..+|+.+++|+|++.+|. .||+||+.++. ++.++++-.+ .+++.++. +.+..||.+|..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~ 462 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER 462 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC
Confidence 88754 567889999999999998 89999999863 2234433222 12333333 344678999855
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
| ..||||||||++||||+++||++|+||||||+||+.++..+++.++++. +++|+|+++|+++. .+.+|+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEEC
Confidence 4 5699999999999999999999999999999999999999999999876 57899999999863 455999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 539 -G~i~e~G~h~ 548 (567)
T COG1132 539 -GRIVERGTHE 548 (567)
T ss_pred -CEEEEecCHH
Confidence 8999999974
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=342.08 Aligned_cols=220 Identities=21% Similarity=0.293 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 478999999985210 00134589999999999999999999999999999999998764 489999999876
Q ss_pred Cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.++|++|++. .+...||.||+.|..... .....+.+++++++++.+||.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234678999999974 233469999999875432 2233444566889999999988777764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=338.79 Aligned_cols=216 Identities=24% Similarity=0.296 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4899999998852 113489999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..+.. .+.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234667999999974 677789999998865422 123333445678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.. +|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 4554 999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99864
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=342.27 Aligned_cols=220 Identities=20% Similarity=0.308 Sum_probs=178.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+... .....+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 4589999999985210 0013489999999999999999999999999999999998763 48999999987
Q ss_pred cCc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 001146 620 KKQ--------ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~--------~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~ 689 (1140)
+.. ...++.++|++|++.. +...|++||+.+..... ....++..+.++++++.++|. +..+..
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~---- 147 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS---- 147 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC----
Confidence 531 2345679999998632 22369999998865322 123333445678889999994 555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|+
T Consensus 148 -~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 148 -PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 6788999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|+.
T Consensus 226 ~-G~i~~~g~~ 235 (289)
T PRK13645 226 E-GKVISIGSP 235 (289)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.69 Aligned_cols=222 Identities=23% Similarity=0.259 Sum_probs=180.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEE
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIT 614 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~ 614 (1140)
....++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344699999999884 24589999999999999999999999999999999998653 14589999
Q ss_pred EcCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 615 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 615 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++|.++.. ...++.++|++|++.+++ .||+||+.+..... .....++.++.+.++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 134667999999988887 69999998865322 111233344567888999988532211111 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
..+.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 246799999999999999999999999999999999999999999999985 4799999999986 67889999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=333.54 Aligned_cols=219 Identities=21% Similarity=0.265 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 620 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67899999884 23589999999999999999999999999999999997542 24589999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+...... +...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 43 234567999999998887 699999988654331100 11223345778999999853211111 1123579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+++|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57789999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 85
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=337.68 Aligned_cols=218 Identities=26% Similarity=0.361 Sum_probs=178.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc------eEEEEEEE
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 615 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~------~~~G~i~~ 615 (1140)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 67899998874 245899999999999999999999999999999999987632 12799999
Q ss_pred cCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|.+... ...++.++|++|++..++.+|++||+.+....... .... ++.++.++++++.+++.+..++.
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~----- 142 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRD----- 142 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 9987642 23455689999998766679999999875321110 1111 22345578899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh
Q 001146 691 VSGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 760 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~ 760 (1140)
+..||||||||++|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~ 221 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARH 221 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHh
Confidence 3579999999999999999 599999999999999999999999999998765 899999999986 57789
Q ss_pred hceEEEEecCCEEEEECCCC
Q 001146 761 FDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 761 ~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+|++++|++ |+++..|+++
T Consensus 222 ~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 222 ADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CCEEEEEEC-CeEEEecCHH
Confidence 999999985 8999999864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=320.03 Aligned_cols=190 Identities=49% Similarity=0.836 Sum_probs=163.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC--cCceEEEEEEEcCc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 618 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 618 (1140)
.++++|+++.|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 588999999985210 011245899999999999999999999999999999999987 5 45899999999
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
++.....++.++|++|++.+++.+|++||+.+.... . .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 875444567899999999999999999999764210 0 399999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986567788999999985 7888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.09 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 36789998884 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..+... +.||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999988754321 223333456788999999987666653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+++|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 57888999999985 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 3
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=333.74 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 478999999874 23589999999999999999999999999999999998764 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .+.+++++++.+++. +..+.. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988887 69999998754321 1 1 123467889999996 444543 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57789999999985 79999
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.|++
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8886
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.37 Aligned_cols=216 Identities=22% Similarity=0.255 Sum_probs=176.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4599999999884 24589999999999999999999999999999999997542 1358999999
Q ss_pred CcccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++. ....++.++|++|++.+++ .||+||+.+....+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234567999999998888 599999998764331 112 22344677888887642 23332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 688999999999
Q ss_pred ec----------CCEEEEECCCC
Q 001146 768 KR----------GGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~----------gg~~~~~g~~~ 780 (1140)
++ .|+++..|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 26789999863
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=330.96 Aligned_cols=212 Identities=22% Similarity=0.302 Sum_probs=177.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 678999999851 1 2389999999999999999999999999999998763 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+...... ... +..++.++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 224579999999999999999999987532111 111 223456789999999987777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 3
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=331.34 Aligned_cols=198 Identities=23% Similarity=0.371 Sum_probs=167.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998763 4899999998764322 12489999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
+......+ ....++.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86421111 2233344456788999999987766653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 730 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 730 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 67889999999985 899988864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=349.51 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=167.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998764 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.|+.. ...+++++++++.+++.+..+..+ +.|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345788999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999998765 899999999986 68899999999985 8999999874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.07 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=177.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999999884 2358999999999999999999999999999999999764 21 1479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. ||+||+.+....+. ....++.+++++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999888875 99999988654321 11233334557788898888532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=349.77 Aligned_cols=195 Identities=23% Similarity=0.377 Sum_probs=169.7
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998764 48999999987632 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.|+.... ...+.+++++++++.++|.+..+... +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875421 12233456789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+.++..+.+.|++++++ |+|+|++||+++ ++..++|++++|++ |+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999998765 899999999986 67889999999985 8999999863
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=332.88 Aligned_cols=216 Identities=21% Similarity=0.237 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 578999999874 235899999999999999999999999999999999976531 2579999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++.+++++++++.+++.+ ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK---- 143 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC----
Confidence 87642 134567999999998887 899999998754321 1122333455778899998742 2232
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+||+++|+
T Consensus 144 -~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 144 -SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 2467999999999999999999999999999999999999999999999876 689999999986 6788999999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14270 221 M-GDLIEFNKTE 231 (251)
T ss_pred C-CeEEEeCCHH
Confidence 5 8999999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=324.89 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=161.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC---c----ccccceEEEeccCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 639 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 639 (1140)
+++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4589999999999999999999999999999999998763 4899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
+.+|++||+.+..... ....++..+.++++++.+++.+..+..+ ++||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223344556789999999987766653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||+|||+.++..+.+.|+++.++|.|+|+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 35689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=329.09 Aligned_cols=213 Identities=26% Similarity=0.379 Sum_probs=180.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|. + ++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK------------E--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC------------C--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 35788888773 1 269999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+..... ..+..+.++.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 31 23567999999999999999999998765332 1223334455778999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||||+++|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998764 999999999986 57788999999985 899999886
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=325.07 Aligned_cols=191 Identities=25% Similarity=0.388 Sum_probs=163.3
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998764 48999999987531 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.+..... ..+..+++++++++.+++.+..+.. +..||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2223345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|+.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 57788999999985 7888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=331.09 Aligned_cols=215 Identities=21% Similarity=0.290 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 488999999884 134899999999999999999999999999999999975421 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234667999999988887 899999998754321 1122333456778888888742 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 899999999986 5788899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=379.16 Aligned_cols=213 Identities=25% Similarity=0.393 Sum_probs=177.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCE
Confidence 457999999999951 23589999999999999999999999999999999998874 5899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.+ ..+|+.++||+|++.+++ .|++||+.++.. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC
Confidence 8643 467889999999999886 599999987521 1233332 34555555543 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 608 ~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 4899999999985 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 683 ~-G~i~~~G~~~ 693 (708)
T TIGR01193 683 H-GKIIEQGSHD 693 (708)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.11 Aligned_cols=220 Identities=25% Similarity=0.295 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999999884 2358999999999999999999999999999999999732 21 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+...... ....+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87632 234567999999998887 899999988654321 1122233455678888888743111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+.+
T Consensus 225 i~~~g~~~ 232 (252)
T PRK14239 225 LIEYNDTK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.86 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 48899999998521 12358999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998765322 123334445678999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999986 34 46999999985 79999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=333.48 Aligned_cols=217 Identities=21% Similarity=0.286 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-e--EEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 617 (1140)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 588999999884 235899999999999999999999999999999999976532 2 479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+. ...+.+.++.++++++.+++.+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87632 234567999999998887 899999988654321 1122333445678888888742 2333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 2467999999999999999999999999999999999999999999999865 699999999987 6889999999997
Q ss_pred c----CCEEEEECCCC
Q 001146 769 R----GGQEIYVGPLG 780 (1140)
Q Consensus 769 ~----gg~~~~~g~~~ 780 (1140)
+ +|+++..|++.
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999863
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=335.47 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|..+... ...+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 37899999998521100 001124689999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcC
Q 001146 621 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~L 694 (1140)
.. ...++.++|++|++. +.+.+|+.|++.+...... .....+.++.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456999999874 5678899999988654321 122333445678899999994 444543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 67788999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 998875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=340.26 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=181.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|+. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46999999999852 124589999999999999999999999999999999997542 2357999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... ... .+..++.++++++.++|.+..++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 235678999999998875 89999999865322 122 2223344677888888754333344433
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+.+||+++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999998865 799999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 300 G~i~e~g~~~ 309 (329)
T PRK14257 300 GWIEEAGETK 309 (329)
T ss_pred CEEEEeCCHH
Confidence 8999999874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=331.11 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
.-+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 356889998874 2458999999999999999999999999999999999754 21 3589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ....+..++.++++++.+++.+....... ....
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChh
Confidence 87532 1346679999999888885 999999886433211 11222334557788999998652211111 1235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 67788999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 226 i~~~~~~ 232 (251)
T PRK14244 226 IVEYNTT 232 (251)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=373.32 Aligned_cols=214 Identities=28% Similarity=0.446 Sum_probs=179.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 357999999999952 224589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.||.+|+
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecC
Confidence 8754 457889999999999887 69999998752 1233332 44555555543 345777876
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 55 5699999999999999999999999999999999999999999999875 4899999999985 468899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 674 ~-G~i~e~G~~~ 684 (694)
T TIGR03375 674 N-GRIVADGPKD 684 (694)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=331.09 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=176.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce---EEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478899999884 2458999999999999999999999999999999999865422 379999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 2345679999999999999999999987653221 1122233345566677776532 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |++++.|+++
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14272 222 V-GDLVEHGPTD 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7999999863
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=374.49 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=180.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 336 ~~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~ 402 (574)
T PRK11160 336 QVSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQ 402 (574)
T ss_pred CCeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 457999999999952 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~~ 689 (1140)
++.+ ..+|+.++||+|++.+++ .|++||+.++. ++.+++ .+.++++.+++.+. .||.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccCHH----HHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8654 456788999999998886 69999998752 122332 35677777777653 46677664
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~ 548 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN 548 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC
Confidence 3 5699999999999999999999999999999999999999999999875 5899999999986 3567999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 549 -G~i~~~g~~~ 558 (574)
T PRK11160 549 -GQIIEQGTHQ 558 (574)
T ss_pred -CeEEEeCCHH
Confidence 8999999863
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=381.70 Aligned_cols=211 Identities=28% Similarity=0.399 Sum_probs=178.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 449 ~~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 515 (686)
T TIGR03797 449 SGAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQ 515 (686)
T ss_pred CceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCE
Confidence 357999999999952 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+|+.++||+|++.+++ .|++||+.++. + .++++ +.++++..++.+ -.||.+|.
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHHH----HHHHHHHcCcHHHHHhccccccccccC
Confidence 8753 467889999999999886 69999998752 1 23332 456666666653 34677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+|++|+
T Consensus 585 ~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 589999999985 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 659 ~-G~iv~~G~~~ 669 (686)
T TIGR03797 659 A-GRVVQQGTYD 669 (686)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=330.42 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478999999874 235899999999999999999999999999999999976532 3479999999
Q ss_pred cccCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 618 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 618 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+..++.++++++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87631 234667999999998887 899999988643221 11222334556778888887532111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 689999999986 67888999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=331.89 Aligned_cols=222 Identities=20% Similarity=0.257 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~~-------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYDT-------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeCC-------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 5899999998841 24899999999999999999999999999999999986542 1469999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+...... .....+.++.+.++++.+++.+..+.... ....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988888 899999988653321 11222334567888999988542211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC-
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 770 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g- 770 (1140)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||++. ++.+.+|++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999853
Q ss_pred ---CEEEEECCCC
Q 001146 771 ---GQEIYVGPLG 780 (1140)
Q Consensus 771 ---g~~~~~g~~~ 780 (1140)
|+++++|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999863
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=297.36 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|+..+| +...+|++||++.+.|+++.|+|.|||||||+|+||.-+.. +..|.|.+||+.+
T Consensus 6 ~l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEE
Confidence 35566665544 45668999999999999999999999999999999987665 4589999999764
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 001146 621 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684 (1140)
Q Consensus 621 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 684 (1140)
.. ...|.+.++|+|.-++++.+||.||+.-+..--+ ..++.+..++.+..++.+|+.+..|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 21 1234567999999999999999999975422111 23455566678889999999988886
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 685 ~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
. +..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.+. ...+...+|
T Consensus 149 Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v 222 (256)
T COG4598 149 Y-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHV 222 (256)
T ss_pred C-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhhe
Confidence 5 3469999999999999999999999999999999999999999999999999999999999986 467788999
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|++ |.+-..|||+
T Consensus 223 ~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 223 IFLHQ-GKIEEEGPPE 237 (256)
T ss_pred EEeec-ceecccCChH
Confidence 99996 8999999984
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=340.94 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=183.0
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE
Q 001146 536 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 615 (1140)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 615 (1140)
....+.++|+||+|.|+ .++++|+||||++.||+.+||+||||+||||++++|-...+ ..+|.|.+
T Consensus 532 ~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~i 597 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITI 597 (790)
T ss_pred cccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEE
Confidence 34568899999999996 34678999999999999999999999999999999976554 56899999
Q ss_pred cCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH--HH-HHHcCCcccccccccCC
Q 001146 616 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID--EV-MELVELNPLRQSLVGLP 689 (1140)
Q Consensus 616 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~-l~~~~l~~~~~~~~g~~ 689 (1140)
||++++. .+.|+.||.||||..+|. -|+..|++|+. +..++|+..+..+ .+ -+.++..+..++.+|..
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER 671 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc
Confidence 9999754 568899999999988876 68888888762 2233333221111 11 12367778889999998
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|.+ |||||||||+|||+++++|.+++|||+||+||..+++.++..|.++++ ++|.|++.|++|. .-.+|.++++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~ 747 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN 747 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC
Confidence 876 999999999999999999999999999999999999999999999875 8999999999874 445799999996
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|..
T Consensus 748 -G~IvErG~H 756 (790)
T KOG0056|consen 748 -GRIVERGRH 756 (790)
T ss_pred -CeEeecCcH
Confidence 899999975
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=329.73 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378999999884 235899999999999999999999999999999999976421 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... .....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87642 134567999999998887 899999988654321 1122233445678888888854211111 12246
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 57889999999985 79
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14262 223 LIEYGPTR 230 (250)
T ss_pred EEEecCHH
Confidence 99999863
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=332.87 Aligned_cols=221 Identities=22% Similarity=0.250 Sum_probs=178.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999998652 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+....... ...
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCc
Confidence 987642 2346789999999988885 99999988654321 11222333457788888888532111111 123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 799999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 244 ~i~~~g~~~ 252 (272)
T PRK14236 244 KLVEYGDTD 252 (272)
T ss_pred EEEecCCHH
Confidence 999999853
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=304.95 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=187.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.+||+++| +++.+|+|+|.++++|.+++++|||||||||||.+++.+.+. .+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecc
Confidence 4566777666 456799999999999999999999999999999999987763 4899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ..+.+.++..-|+......+||+|-+.|+.........+. +.+..++++++.++|.+..|+.. .+|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~-eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-EDRRIINEAIEYLHLEDLSDRYL-----DELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCch-HHHHHHHHHHHHhcccchHHHhH-----Hhcccch
Confidence 3 4466778889999988889999999999744332223333 44567899999999999999874 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||.-||+.|+.+.+.++||||.++||-....++++.|++++++ |+|||++.||.+ ..-.+.|+++-|++ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 999999999998 46778899999986 8999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 219 ~~~e 222 (252)
T COG4604 219 SPDE 222 (252)
T ss_pred CHHH
Confidence 9975
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=364.53 Aligned_cols=218 Identities=26% Similarity=0.332 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78999999884 24589999999999999999999999999999999998764 4899999998763
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..++.++|++|++.+++.+||+||+.++...+.. ...+..+.+++++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245799999999999999999999886432210 11223334456789999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 67889999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++.+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=323.82 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 6789999987410 123569999999999999999999999999999999999876 35899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1245789999999999999999999998754321 1234444556889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|+|+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999975 4689999999985 664
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=331.94 Aligned_cols=215 Identities=24% Similarity=0.259 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 488999999884 13589999999999999999999999999999999998764 47999999987
Q ss_pred ----cCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 001146 620 ----KKQE---T----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 685 (1140)
Q Consensus 620 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 685 (1140)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.+..++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2456899999973 5677899999976432111 1112233456788999999963 44443
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 567789999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |++++.|++
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999986
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=374.37 Aligned_cols=215 Identities=23% Similarity=0.323 Sum_probs=179.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++||+|+|+. +++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 405 (582)
T PRK11176 339 KGDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGH 405 (582)
T ss_pred CCeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCE
Confidence 347999999999952 224589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
+.+. ..+++.++||+|++.+++ .|++||+.++. +...++++ ++++++.+++. +-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8653 456788999999999887 79999998752 11233333 45555555543 445788886
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ +.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999999999874 4799999999985 578899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 553 ~-g~i~e~g~~~ 563 (582)
T PRK11176 553 D-GEIVERGTHA 563 (582)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=382.74 Aligned_cols=213 Identities=26% Similarity=0.403 Sum_probs=176.0
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+.+ +++++|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 476 ~~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~ 543 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGV 543 (711)
T ss_pred CCeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCE
Confidence 3579999999999632 124689999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+++.++||+|++.+++ .|++||+.++. ++.+++ .+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8754 456788999999999886 79999998752 122332 2456666666543 35677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+||||||+||+++++.+.+ .. ..+++|+|+++|+++ ..+.+|+|++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999988 22 235899999999985 467899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 688 ~-G~ive~Gt~~ 698 (711)
T TIGR00958 688 K-GSVVEMGTHK 698 (711)
T ss_pred C-CEEEEeeCHH
Confidence 5 8999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=365.36 Aligned_cols=219 Identities=25% Similarity=0.314 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHcc--C-C-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR--L-S-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~--~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
... ..++.++|++|++.+++.+||+||+.++.... . . .....++.+++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12356999999999999999999998753211 0 0 00122334456789999999987777654 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57789999999985 89
Q ss_pred EEEECCCCc
Q 001146 773 EIYVGPLGR 781 (1140)
Q Consensus 773 ~~~~g~~~~ 781 (1140)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=327.83 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478999999884 135899999999999999999999999999999999986642 2369999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+...... .....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87632 2346789999999988875 999999987543211 112223345677788888753211111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999985 79
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=330.78 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999985 245899999999999999999999999999999999986531 3589999999
Q ss_pred cccCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 618 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 618 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234667999999998888 899999987643221 12333334456788898988643221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 67889999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=332.74 Aligned_cols=216 Identities=20% Similarity=0.267 Sum_probs=175.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 616 (1140)
..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3589999999884 1348999999999999999999999999999999999643 1 0258999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+++. +..+..
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987532 1346679999999988874 999999987543211 12222344567788888874 222332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 577889999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..|+.
T Consensus 255 ~~-G~i~~~g~~ 265 (286)
T PRK14275 255 YE-GVLVEHAPT 265 (286)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999985
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.71 Aligned_cols=215 Identities=24% Similarity=0.324 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC--c-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 617 (1140)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 488999999884 23589999999999999999999999999999999998642 1 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87632 234567999999988886 799999987644321 1122223345778888888842 2232
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 2457999999999999999999999999999999999999999999999854 799999999986 5788899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=328.97 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=175.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 617 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g 617 (1140)
..++++|++++|. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3589999999872 23799999999999999999999999999999999987641 1589999999
Q ss_pred cccCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCC
Q 001146 618 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVGLPGV 691 (1140)
Q Consensus 618 ~~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~g~~~~ 691 (1140)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ...+ ++.++++++.+++.+. .+.. .
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPAD--DATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CChH--HHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 88753322 357999999974 4566899999876543221 1111 2457889999999762 3333 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 899999886
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=330.51 Aligned_cols=225 Identities=25% Similarity=0.339 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+..+ ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 78999999885200 000 00135689999999999999999999999999999999998763 5899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
. ...++.++|++|++ .+.+..|+.|++.+...... .....+....++++++.+++. +..+.. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 46677999999876532111 123334445688999999996 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57788999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=319.85 Aligned_cols=201 Identities=23% Similarity=0.290 Sum_probs=172.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 489999998874 23589999999999999999999999999999999998764 479999999877
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345568999999988888999999988654321 11 1234578889999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6889999999986
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.72 Aligned_cols=219 Identities=24% Similarity=0.259 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 488999999884 235899999999999999999999999999999999975421 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ....+.++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 234567999999998888 4999999987544321 1222334457788888887532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 57788999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9999886
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.58 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=175.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999998642 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||+||+.+....+. ... +.++.++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2346789999999888875 99999988654331 122 23345788899998853 22332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE-E
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-L 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~-~ 766 (1140)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+||++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999876 489999999986 5778899975 5
Q ss_pred EecCCEEEEECCC
Q 001146 767 MKRGGQEIYVGPL 779 (1140)
Q Consensus 767 l~~gg~~~~~g~~ 779 (1140)
|+ +|+++..|+.
T Consensus 253 l~-~G~i~~~g~~ 264 (285)
T PRK14254 253 LT-GGELVEFDDT 264 (285)
T ss_pred ee-CCEEEEeCCH
Confidence 66 5899999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=325.21 Aligned_cols=201 Identities=24% Similarity=0.312 Sum_probs=166.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcCcccCcccc-cceEEEeccCCC--CCCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 643 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 643 (1140)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 479999999999999999999999999999999987631 158999999988654322 357999999974 557789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.|++.+...... ...+..++.++++++.+++.+ ..+.. ++.|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653321 112233456789999999973 33443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 67789999999985 899999875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.95 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 489999999884 2358999999999999999999999999999999999642 1 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999988874 99999987643221 1112222345677888888742 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5788999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 899999985
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=321.74 Aligned_cols=192 Identities=27% Similarity=0.355 Sum_probs=160.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcH
Confidence 457799999999999999999999999999999999998763 48999999976421 1112334567999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.+...... ...++.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988754321 223334456788899999987777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 725 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57788999999985 7888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=332.28 Aligned_cols=219 Identities=22% Similarity=0.388 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 588999999884 123589999999999999999999999999999999998764 489999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997652 234788988654211000 00111222345678899999987777654 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |+++..|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 678899999776 4 7999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=330.92 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 367899988741 124589999999999999999999999999999999998764 4799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+... ....+... ...++.++.+ ++.+..+. ..
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234667999999987765 799999976421 11111100 1122333333 33322222 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++ +.+|++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 45 56999999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999985
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=284.65 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|..+++++.|. ..++|-|++++.+.||.+.++||||||||||++.|.=+.. +.+|+..+.|...
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 467888888874 3457999999999999999999999999999999975444 3478888877543
Q ss_pred C------c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 621 K------Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
+ + ..+|+.+|+|+|...++|.+||.||+.-+. ++. .+.++++.+.+..++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 2 1 346788999999999999999999996542 221 24566677777899999999999998763
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++++.+++++..|.|-+++||... -..+.+.+|+.|.+ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeec-C
Confidence 359999999999999999999999999999999999999999999999999999999999875 35678899999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=371.20 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=179.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++|+|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCE
Confidence 357999999999951 13489999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+++.++||+|++.+++ .|++||+.++. ..+++ .++++++.+|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8753 467889999999999998 59999998852 22332 2566777776553 34677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ....+|+|++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 44 56999999999999999999999999999999999999999999998754 799999999984 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 549 ~-G~i~~~G~~~ 559 (592)
T PRK10790 549 R-GQAVEQGTHQ 559 (592)
T ss_pred C-CEEEEEcCHH
Confidence 5 8999999864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.32 Aligned_cols=216 Identities=19% Similarity=0.233 Sum_probs=175.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 616 (1140)
.-++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3689999999884 235899999999999999999999999999999999975421 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ..++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987632 2345689999999888874 99999988654321 111 12234567778777642 22322
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 688899999999
Q ss_pred e--------cCCEEEEECCCC
Q 001146 768 K--------RGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~--------~gg~~~~~g~~~ 780 (1140)
+ +.|+++..|+++
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred ecccccccccCceEEEeCCHH
Confidence 7 258999999973
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=360.45 Aligned_cols=220 Identities=22% Similarity=0.340 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 67899999884 24589999999999999999999999999999999998764234899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. +.. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12456999999998999999999998864332111 122333445678999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 67788999999985 79999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=326.07 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 488999999884 2358999999999999999999999999999999999753 21 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87631 234567999999998888 7999999886543211 112222334567777777642111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 57789999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=317.28 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=166.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 57889998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+++.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999989999999999988754321 1 1234578899999998766665 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||++|||||+++|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 454544566554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=360.95 Aligned_cols=212 Identities=21% Similarity=0.308 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999884 23589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... . .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 234689999999999999999999875311 1223455788999999987777654 56999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57789999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=323.11 Aligned_cols=210 Identities=22% Similarity=0.356 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 488999999874 23589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...+.. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 234567899999988887 5999999876443211 11 123467899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++ ++ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999986 45 56999999964444555
Q ss_pred ECC
Q 001146 776 VGP 778 (1140)
Q Consensus 776 ~g~ 778 (1140)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=316.48 Aligned_cols=196 Identities=27% Similarity=0.341 Sum_probs=167.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 35788988874 23589999999999999999999999999999999998764 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++. .+.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHH
Confidence 2 23566799999999888899999999875311 1 123468899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++...+|+++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998777999999999986 577889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=324.50 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 489999999884 2358999999999999999999999999999999999731124589999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..+.++++++.+++. +..+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999875432110 0111222335577889999986 34444321
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 770 (1140)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999998877999999999976 35555 899999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 8999999874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=372.91 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=177.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 457999999999952 224589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8754 457788999999998886 69999998742 1233332 34445554443 335777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999874 5899999999986 456799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=324.57 Aligned_cols=220 Identities=19% Similarity=0.220 Sum_probs=178.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 615 (1140)
+..+..+++++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 6 ~~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 34578888887763 346899999999999999999999999999999999986531 25899999
Q ss_pred cCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|.++.. ...++.++|++|++.++ .+|+.||+.+....+. .. .+.++.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987632 23456799999998877 5999999998764431 11 2233467888999998543222211 13
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe--
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-- 768 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-- 768 (1140)
.+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|+++ ++.+.+||+++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVD 224 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 46799999999999999999999999999999999999999999999985 4799999999986 5788999999996
Q ss_pred -----cCCEEEEECCC
Q 001146 769 -----RGGQEIYVGPL 779 (1140)
Q Consensus 769 -----~gg~~~~~g~~ 779 (1140)
++|+++..|+.
T Consensus 225 ~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 225 ISQGTRTGYLVEMGPT 240 (261)
T ss_pred cccccCCceEEEeCCH
Confidence 35899999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=341.66 Aligned_cols=224 Identities=22% Similarity=0.292 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcCc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 618 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 618 (1140)
-++++|++.+|... .+...+++||||++.+||++||+|.|||||||+.++|.|..+++ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899999988643 12357999999999999999999999999999999999976544 35799999998
Q ss_pred ccCc---c----cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ---E----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++.. . ...+.++|++|++ .+-|.+|+.+.+.-....+.. .+.++.++++.++++.++|.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6532 1 1346799999996 566778999888766555532 2366677788999999999876654 22
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.+++|||++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999974 5999999999997 4789999999999
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999974
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.36 Aligned_cols=215 Identities=21% Similarity=0.217 Sum_probs=173.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
-++++|+++.|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~~-------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYGE-------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEECC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 5899999998841 348999999999999999999999999999999999764 1 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 163 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHD---- 163 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhc----
Confidence 87631 234567999999988887 599999998654321 111222234456777776542 22222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|+
T Consensus 164 -~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 164 -NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 2457999999999999999999999999999999999999999999999865 799999999986 5778999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899999985
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=328.14 Aligned_cols=218 Identities=19% Similarity=0.223 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++||+++|. ++++|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999999884 235899999999999999999999999999999999975321 2579999999
Q ss_pred cccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. .+.++.++++++.+++.+..+... .....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8763 1234567999999988887 599999988654321 11 122344567777777743111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec---
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 769 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~--- 769 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999986 68899999999972
Q ss_pred -----CCEEEEECCC
Q 001146 770 -----GGQEIYVGPL 779 (1140)
Q Consensus 770 -----gg~~~~~g~~ 779 (1140)
.|+++..|++
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999986
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.69 Aligned_cols=226 Identities=29% Similarity=0.446 Sum_probs=190.5
Q ss_pred CCCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceE
Q 001146 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 609 (1140)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~ 609 (1140)
...+..|.+.+.+..+++++. +| ..++++|+|+||.+.+||.+||+||||||||||.|+|.|.-. +.
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~---PP--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~ 389 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA---PP--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PT 389 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec---CC--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cC
Confidence 345677878889999999983 22 245679999999999999999999999999999999999766 45
Q ss_pred EEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH-----HHHHHHHHHHHHcCCccc
Q 001146 610 TGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-----TRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 610 ~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~ 681 (1140)
+|.|.+||.+.++ +.+-+++||.||+-.+|+ -||.||+.- ..++.+.+ .|.+.++|++ +.+.+-
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~G 461 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQG 461 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCC
Confidence 8999999998754 457789999999988887 799999952 22223322 2333445554 356778
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
.||.+|..+ ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+
T Consensus 462 YdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~ 538 (580)
T COG4618 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASV 538 (580)
T ss_pred ccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhc
Confidence 899999765 579999999999999999999999999999999999999999999999999999999999986 68899
Q ss_pred ceEEEEecCCEEEEECCCC
Q 001146 762 DELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+|++|+ +|++-.+||.+
T Consensus 539 Dkilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 539 DKILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred ceeeeec-CChHHhcCCHH
Confidence 9999998 58999999984
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=378.52 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=177.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. .++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 475 ~~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 541 (710)
T TIGR03796 475 SGYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGI 541 (710)
T ss_pred CCeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999999962 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8743 457889999999999886 79999998641 1233332 445566555543 45677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+|||++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 57999999999999999999999999999999999999999999975 4899999999985 467799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 686 ~-G~i~~~G~~~ 696 (710)
T TIGR03796 686 R-GKVVQRGTHE 696 (710)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=307.95 Aligned_cols=170 Identities=27% Similarity=0.423 Sum_probs=150.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 35788988874 13589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999998888899999873 999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999877899999999986 57778999999986 54
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=358.01 Aligned_cols=217 Identities=27% Similarity=0.331 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 488999999884 23589999999999999999999999999999999998763 489999999876
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++.+||+||+.+.............+.+++++++++.+++.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 124567999999999999999999998853211111122333445678999999998666654 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 67788999999985 798877
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=323.95 Aligned_cols=220 Identities=22% Similarity=0.290 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc----eEEEEEEEc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITIS 616 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~----~~~G~i~~~ 616 (1140)
.+.++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 388999999874 245899999999999999999999999999999999986532 123566666
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCC
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVS 692 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~ 692 (1140)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+.. +.... ..+
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 152 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS--PAS 152 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC--Ccc
Confidence 665421 2346779999999999999999999998754321 112333445678899999986421 11111 235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+.||++++|++ |+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 699999999986 57789999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 230 i~~~g~~~ 237 (257)
T PRK14246 230 LVEWGSSN 237 (257)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=322.55 Aligned_cols=210 Identities=26% Similarity=0.398 Sum_probs=169.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 4789999998741 123589999999999999999999999999999999998763 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 691 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g------~~~~ 691 (1140)
.. ...++.++|++|++.+++ .|+.||+.+... ... ++.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 234567999999998877 699999976421 111 1235677788888765554321 1123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. . .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 89999999986 3 479999999985 7
Q ss_pred EEEEEC
Q 001146 772 QEIYVG 777 (1140)
Q Consensus 772 ~~~~~g 777 (1140)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=321.73 Aligned_cols=219 Identities=19% Similarity=0.253 Sum_probs=177.6
Q ss_pred cEEEEEeEEEEEecCc----hhhh---cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEE
Q 001146 540 HSLTFDEVVYSVDMPE----EMKV---QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 612 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~ 612 (1140)
+.++++||+..|.... ..+. ......++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 5688999988776532 1111 01122456799999999999999999999999999999999998764 4799
Q ss_pred EEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 613 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 613 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+.. .+
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 345667776777899999998765432 123344445567888888888766654 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999998777999999999976 57788999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=325.03 Aligned_cols=215 Identities=26% Similarity=0.278 Sum_probs=173.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 378999999884 13479999999999999999999999999999999998764 48999999976
Q ss_pred ----cCc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 001146 620 ----KKQ---E----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 685 (1140)
Q Consensus 620 ----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 685 (1140)
+.. . ..++.++|++|++. +.+.+|+.||+.+...... .....+.++.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999874 4456799999875432111 0111123456788999999963 45544
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |+++..|++
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=357.61 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=179.5
Q ss_pred EeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--
Q 001146 545 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-- 622 (1140)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-- 622 (1140)
+|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++..
T Consensus 2 ~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 2 SNISKSFP-------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKS 66 (491)
T ss_pred CceEEEeC-------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCC
Confidence 56777763 24689999999999999999999999999999999998764 48999999987642
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++.++|++|++.+++.+||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHH
Confidence 1235679999999988899999999987532111101123333456788999999987666653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 999999999999999999999999999999999999999878999999999986 67789999999985 8999999876
Q ss_pred c
Q 001146 781 R 781 (1140)
Q Consensus 781 ~ 781 (1140)
+
T Consensus 220 ~ 220 (491)
T PRK10982 220 G 220 (491)
T ss_pred h
Confidence 4
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=326.40 Aligned_cols=210 Identities=24% Similarity=0.320 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhh
Confidence 367899988742 113589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-----KMFIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+.... ...... ...+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988876 6999999875321 111111 11234444444 444433332 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++. .||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 454 4999999986 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=327.21 Aligned_cols=211 Identities=18% Similarity=0.266 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 5889999999852 12348999999999999999999999999999999999875 269999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------g~~~ 690 (1140)
.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++.+||.+..+... +. +
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~ 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-G 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-C
Confidence 43 345678999999999987 59999996321 1122 23567778888876544432 22 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+++|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ .+ ..+||+++|++
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~- 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE- 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-
Confidence 35699999999999999999999999999999999999999999999874 4899999999985 44 45999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|++++.|++++
T Consensus 212 G~i~~~g~~~~ 222 (275)
T cd03289 212 NKVRQYDSIQK 222 (275)
T ss_pred CeEeecCCHHH
Confidence 89999999753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=321.90 Aligned_cols=220 Identities=25% Similarity=0.292 Sum_probs=172.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 67899999884 23589999999999999999999999999999999998421145899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-ccC--C-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRL--S-PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . ......+.++.+++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 1 23568999999988888887777654321 110 0 0011222345677888988885 3444432 13
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998877899999999976 45555 899999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=322.40 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=177.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
.++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 378999999874 2458999999999999999999999999999999999743 1 12589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+...... ..+.+..++++.++++.+++.+...... .....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87642 2345679999999988874 99999987643221 1122333456788888888754211111 12245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999854 899999999986 68889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=324.45 Aligned_cols=210 Identities=26% Similarity=0.401 Sum_probs=166.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 5789999998741 12489999999999999999999999999999999998764 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~g~~~ 690 (1140)
.. ...++.++|++|++.+++. |++||+.+... ....+ .+++.++.+++.+..+.. .+ ..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLG-EN 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCHH----HHHHHHHHhChHHHHHhCcccccCHhh-cC
Confidence 42 2346679999999888775 99999986521 11111 133344444443322211 11 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD- 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999985 5899999999986 44 56999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 799988874
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=336.74 Aligned_cols=228 Identities=25% Similarity=0.368 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|.+.+ .+|+|.++|++.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 478999998874 35689999999999999999999999999999999998774 589999999986
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ......|+.|.|+..+.|+|||.||+.++...+. ..-.+...-++...++++.+++....++.+ ..||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 43 2345678999999999999999999988765443 223455566677889999999864466665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
+||||.|+|||||..+++||+||||||.|+......+.+.+++++++|.++|++||.++ +++++|||+.+|.+ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999985 89999
Q ss_pred ECCC-Ccc-hhHHHHHH
Q 001146 776 VGPL-GRH-SCHLISYF 790 (1140)
Q Consensus 776 ~g~~-~~~-~~~~~~~f 790 (1140)
.++. .+. ..+++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 9984 432 23444443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=326.35 Aligned_cols=211 Identities=27% Similarity=0.381 Sum_probs=163.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. +++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehh
Confidence 3678999887411 124589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+....+ ..++... .+.+.++.+ ++....+. ..
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CC
Confidence 2 233567999999988776 69999998743211 1111100 112222222 22222222 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-G 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999987 7999999999986 45 48999999986 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99998875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=313.75 Aligned_cols=197 Identities=28% Similarity=0.378 Sum_probs=165.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 78899998874 23589999999999999999999999999999999998763 4899999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
....++.++|++|++.+++.+|++||+.+....+. .. ++.++++++.+++.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888889999999987654321 11 123688999999987665543 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|+|+++|++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999986 3444 8887774
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=363.02 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=175.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++|+|+. +++++|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 314 ~~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~ 380 (544)
T TIGR01842 314 EGHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGA 380 (544)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCE
Confidence 346999999999952 124589999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
++.. ..+++.++||+|++.+++. |++||+.+.. +..++++-. ...++.++.+ .+-.|+.+|..
T Consensus 381 ~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~- 451 (544)
T TIGR01842 381 DLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG- 451 (544)
T ss_pred ehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-
Confidence 8643 3467889999999999874 9999998532 122333211 1122333332 22346666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 3569999999999999999999999999999999999999999999988666899999999985 4678999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 529 G~i~~~g~~~ 538 (544)
T TIGR01842 529 GRIARFGERD 538 (544)
T ss_pred CEEEeeCCHH
Confidence 8999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=322.22 Aligned_cols=221 Identities=20% Similarity=0.218 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 615 (1140)
+..++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999999884 235899999999999999999999999999999999976532 25899999
Q ss_pred cCcccC-------cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 616 SGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 616 ~g~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
+|.+.. ....++.++|++|++.+++. |++||+.+....... ...+..++.++++++.+++.+.......
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~- 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLG- 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHh-
Confidence 997642 12346679999999988885 999999876542211 1112223456777787776421111111
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~ 234 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY 234 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 12357999999999999999999999999999999999999999999999865 699999999986 5778999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 235 ~-G~i~~~g~~ 244 (265)
T PRK14252 235 M-GELIEFGAT 244 (265)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=327.62 Aligned_cols=203 Identities=20% Similarity=0.365 Sum_probs=168.3
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccC---CCCCCCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFV 642 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~l 642 (1140)
++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||+++... ..+..++|||.| +-+++.+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 789999999999999999999999999999999655 3489999999987542 345679999987 4578889
Q ss_pred CHHHHHHHHHHccCC-C-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 643 TIYESLLFSAWLRLS-P-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+|+||+.++...+.. . -.+....++.+++..+.+++....-. ..+..||||.+|||.|||.|..+|++|+||||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEP 428 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLARWLATDPKVLILDEP 428 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHHHHhcCCCEEEECCC
Confidence 999999887322211 1 24444455677888998887532211 12467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|.|.|.-++.++.+.+++++++|++||+++-++. |+..+||||++|++ |+++-.=+.+
T Consensus 429 TRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 429 TRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred CcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999985 89999999999995 8988754443
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=321.45 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=168.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
+|+|+||++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999864 2 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCcEeEEe
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 718 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~-------~p~illlD 718 (1140)
||+.+..... ...++.++.++++++.+++.+..+.. ++.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 12223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999998877999999999986 57889999999985 8999999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=310.93 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcc
Confidence 35788888774 24689999999999999999999999999999999998764 4899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2245678999999888888999999987654321 1 1 234678899999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++.. + .+++++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 99999999999999999999999999999999999999987779999999999752 2 3466653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=309.93 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=150.2
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-----ccccceEEEeccCCC-CC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 639 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 639 (1140)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34689999999999999999999999999999999998764 48999999987631 124567999999973 23
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
...||+||+.+..... ....++.++.++++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999999865432 1233334456788999999987776653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
||+|||+.+++.+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=306.23 Aligned_cols=170 Identities=29% Similarity=0.421 Sum_probs=150.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36789988874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23457899999999888889999987541 999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||||++|||||+++|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 9999999999999999999999999999999999999999999876 899999999986 56778999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=315.80 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=167.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc--Cc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS--GY- 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 618 (1140)
++++|+++.|+.... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 678999998852100 00124699999999999999999999999999999999998764 47999998 42
Q ss_pred -ccCc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 001146 619 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 689 (1140)
Q Consensus 619 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~ 689 (1140)
+... .. .++.++|++|++.+++.+||+|++.+..... ....+..++.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1356899999999999999999998764322 12233334567889999999753 3433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999998777999999999964 4667899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=354.47 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC----
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---- 617 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g---- 617 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 46789998873 2458999999999999999999999999999999999752113479999872
Q ss_pred -------------------cccC----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 001146 618 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSET 664 (1140)
Q Consensus 618 -------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~ 664 (1140)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 2110 0 1234678999997 67888899999999865432 123334
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CC
Q 001146 665 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 743 (1140)
Q Consensus 665 ~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g 743 (1140)
.+++++++++.+++.+..+.. ++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999998776665 357999999999999999999999999999999999999999999999865 48
Q ss_pred CEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 744 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 744 ~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+|||++||++. .+.+.||++++|++ |++++.|+++
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 99999999986 57789999999985 7999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.66 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=176.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999997642 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC---------CCC-HHHHHHHHHHHHHHcCCccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~~~l~~~ 681 (1140)
|.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987642 134567999999988887 59999999865422100 011 12234557888888887532
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
.+.... ...+.||||||||++|||||+++|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|+++ .+.+++
T Consensus 190 ~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhc
Confidence 211111 12467999999999999999999999999999999999999999999999876 589999999986 577899
Q ss_pred ceEE-EEecCCEEEEECCCC
Q 001146 762 DELF-LMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~-~l~~gg~~~~~g~~~ 780 (1140)
|+++ +|+ +|+++..|+++
T Consensus 267 d~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 267 DQTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred CEEEEEec-CCEEEEeCCHH
Confidence 9974 667 48999999863
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=306.27 Aligned_cols=171 Identities=24% Similarity=0.416 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++++ +|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 37788888765 59999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 431 2456799999984 57888999999976420
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 9999999999999999999999999999999999999999999998777899999999986 68889999999986 55
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=381.29 Aligned_cols=215 Identities=22% Similarity=0.360 Sum_probs=171.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc-Cc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~ 618 (1140)
..++++||+|+|+.+ .++++|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 381 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~ 448 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSH 448 (1466)
T ss_pred CcEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCc
Confidence 379999999999632 123589999999999999999999999999999999998774 58999995 56
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHc-cC--------CC----------------------------
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL--------SP---------------------------- 658 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~--------~~---------------------------- 658 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++... +. ..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6533 346788999999999987 5999999986310 00 00
Q ss_pred --CCC---------HHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 659 --EVD---------SETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 659 --~~~---------~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
... ....++.+.++++.+++.+ ..||.+|..+ ..||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 000 0011234666777776554 3466677653 56999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 721 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||+||+.++..+++.|+++.+ +|+|+|+++|+++ ..+.+|++++|++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999999999999999875 5899999999986 34789999999863
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=359.67 Aligned_cols=189 Identities=28% Similarity=0.443 Sum_probs=159.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999999962 12489999999999999999999999999999999998874 4899999998
Q ss_pred ccC--cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 619 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+++ ...+|+.++||+|++.+++ .|++||+.++. ++.++++ ++++++..+++ +-.||.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDATDEE----LWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCCHHH----HHHHHHHcCCHHHHHhCcccccchhccc
Confidence 765 3456789999999999887 69999999852 2233332 45666666654 3457888875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
| ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 4699999999999999999999999999999999999999999998763 589999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=307.79 Aligned_cols=184 Identities=25% Similarity=0.299 Sum_probs=155.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 36789998874 23589999999999999999999999999999999998421145899999998864
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. . .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 31 1 2345999999988888888877660 00 1359999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH-hhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.+ .+|++++|++ |+++..
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998777899999999986 4555 7999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 187 ~~~ 189 (200)
T cd03217 187 GDK 189 (200)
T ss_pred ccH
Confidence 854
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=360.77 Aligned_cols=211 Identities=27% Similarity=0.375 Sum_probs=176.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++.+|+|+|++++|||.++|+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 46999999999962 12489999999999999999999999999999999998874 48999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+.. ..+++.++||+|++.+++ .|++||+.++. ++.++++ +.++++.+++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 456788999999998886 69999998752 1233333 34455555543 3356767654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999998874 4899999999985 5788999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=316.75 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 4789999998851 123589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~ 690 (1140)
.. ..+++.++|++|++.+++ .|++||+.+.. .... +.+.+.++.+++.+..+. ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 235678999999988776 69999986421 1111 224556666666543321 111 13
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++ ..+|++++|++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK- 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 689999999986 45 45999999985
Q ss_pred CEEEEECC
Q 001146 771 GQEIYVGP 778 (1140)
Q Consensus 771 g~~~~~g~ 778 (1140)
|+++..|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.20 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 3667777766531 1124689999999999999999999999999999999998764 489999999642
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++.+...+.+.+|++||+.+..... ..+.++.++.++++++.+++.+..+..+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1122344567789999998754332 1233344456778999999987776653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |+++..|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999986 67788999999985 8999999874
Q ss_pred c
Q 001146 781 R 781 (1140)
Q Consensus 781 ~ 781 (1140)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=321.16 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=163.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 367899988741 13489999999999999999999999999999999998763 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~ 691 (1140)
. ..+++.++|++|++.+++ .|++||+.+... ....+. +.+.++..++.+.. ++... ...
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCC
Confidence 2 234567999999988876 699999987531 111111 22233333332221 11111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|+++ .+ ..+|++++|++ |
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-G 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 999999999986 45 45999999985 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=359.29 Aligned_cols=220 Identities=19% Similarity=0.255 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|... .++.++|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEe
Confidence 48999999998521 1234699999999999999999999999999999999998764 379998888532
Q ss_pred C-------------cc---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 001146 621 K-------------QE---TF-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP- 680 (1140)
Q Consensus 621 ~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 680 (1140)
. .. .. ++.+|||+|++ .+++.+||+||+.+...... .....+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 11 12 24689999997 67888999999998765421 2234444567889999999964
Q ss_pred --cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHH
Q 001146 681 --LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDI 757 (1140)
Q Consensus 681 --~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~ 757 (1140)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999765 899999999986 57
Q ss_pred HHhhceEEEEecCCEEEEECCCC
Q 001146 758 FEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 758 ~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
.++|||+++|++ |+++..|++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHH
Confidence 889999999985 8999988864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=303.67 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=147.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 367899988742 123489999999999999999999999999999999998764 4899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++ .|++||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 3 234667999999988777 4888876 99999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||++|||||+++|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+ +.+|++++|++ |+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 99999999999999999999999999999999999999998777999999999985 44 68999999985 55
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=317.87 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 478999999884 23589999999999999999999999999999999998764 4899999862
Q ss_pred CcccccceEEEeccCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..+.. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877765 3788876532 1111 12367889999998777665 35799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 6778999999995 4 688888
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=360.20 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=178.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. .++++|+|+|+++++||.++|+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCE
Confidence 346999999999952 123589999999999999999999999999999999998874 4799999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
+++. ..+++.++|++|++.+++ .|++||+.++. +++.+++ .++++++.+++.+ -.|+.+|.
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecC
Confidence 7643 456788999999998876 69999998752 1123333 2556666666543 35677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ +.||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 466 ~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 54 5699999999999999999999999999999999999999999999874 4799999999974 578899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 542 ~-g~i~~~g~~~ 552 (571)
T TIGR02203 542 D-GRIVERGTHN 552 (571)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999988853
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=308.11 Aligned_cols=194 Identities=23% Similarity=0.305 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 67899998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~~---~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----PG---AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----cc---hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 235677999999988888999999998864211 11 134688999999977666543 46999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
||++|||+|+++|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 345566543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=352.26 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|++++|+.. .+.+++|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 38899999998521 01246899999999999999999999999999999999986531 2589999999
Q ss_pred cccCcc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 001146 618 YPKKQE------TF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSL 685 (1140)
Q Consensus 618 ~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~ 685 (1140)
.++... .. ++.++|++|++. +.+.+|++|++.+...... .....+.+++++++++.++|.+. .+..
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 12 246999999874 5677899999876543211 12344455678899999999753 3444
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.+||+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 577899999
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|++ |++++.|+++
T Consensus 228 ~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQN-GRCVEQNRAA 242 (529)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999998864
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=319.57 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=166.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCc
Confidence 358999999998521 123589999999999999999999999999999999998763 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCcccccccccCCCCCcC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--ELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~g~~~~~~L 694 (1140)
+.. ...++.++|++|++.+++ .|++||+.+...............+..+++.++.+ |+.+..+.. ++.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 234567999999988776 69999998753211000000011112346777777 666554443 4679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|++ |+
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 99999999999999999999999999999999999999999999865 689999999986 45 45999999985 55
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=306.86 Aligned_cols=191 Identities=24% Similarity=0.401 Sum_probs=167.4
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++++..+.-.++||-|+||||||||+|+|+|...++ +|.|.+||....+ ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 477777775799999999999999999999988754 8999999975422 1246789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+.||.|+.+.. .....+++.+.+|+.|..++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 2234689999999999999874 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|-..+.+++..|+++.++ +..|+.++|.+. |+.+++|+|++|++ |++...|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999866 789999999986 89999999999986 8999999964
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=366.22 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=107.7
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCc
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 713 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~---~~p~ 713 (1140)
.+...||.|+|.+...-........++.++++ ++++.+||.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999886542111111223333445 47888999765 4554 3579999999999999998 6999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|+++.|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 3589999998753
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=303.19 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=150.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQ-----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCC-----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 4688999887421 12489999999999999999999999999999999998764 4799999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567999999987776 6888876 135999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++. +++|+|+++|++. ++ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999986 44 57999999985 7888754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=355.58 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=176.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++|++|+|+. +++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 311 ~~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~ 377 (569)
T PRK10789 311 RGELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDI 377 (569)
T ss_pred CCcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCE
Confidence 346999999999852 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+++.++|++|++.+++ .|++||+.++. ++.++++ ++++++..++. +-.|+.+|.
T Consensus 378 ~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 378 PLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC
Confidence 8643 356788999999999887 59999998742 1233332 34455554443 345677766
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|+
T Consensus 448 ~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 43 5699999999999999999999999999999999999999999999875 5899999999985 457799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 524 ~-G~i~~~g~~~ 534 (569)
T PRK10789 524 H-GHIAQRGNHD 534 (569)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999853
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=286.92 Aligned_cols=230 Identities=25% Similarity=0.293 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|++.++. +++.||++||++|++||+.+||||||||||||.++|+|...+..++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478999998874 22479999999999999999999999999999999999988878899999999987
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LS 695 (1140)
.. +..|..+..-+|.|.-+|..|+.+.|..+...+.....-..+-...+++.++.+++.+ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 54 3345677889999999999999999988765432211102233456788999999987 5555543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh--ceEEEEecCCEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQE 773 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gg~~ 773 (1140)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||.. .+.++. |+|-+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999999999999985 577777 99999996 899
Q ss_pred EEECCCCcchhHHHHHHhhCC
Q 001146 774 IYVGPLGRHSCHLISYFEAIP 794 (1140)
Q Consensus 774 ~~~g~~~~~~~~~~~~f~~~~ 794 (1140)
+..|.+ ++.++.+..+
T Consensus 224 v~sG~~-----el~~~le~~g 239 (251)
T COG0396 224 VKSGDP-----ELAEELEEKG 239 (251)
T ss_pred EecCCH-----HHHHHHHHhc
Confidence 999986 4667776653
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=310.49 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=160.4
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC--CCCHHHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYESLLFSA 652 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~ 652 (1140)
|++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998764 48999999987532 3567999999986643 479999998753
Q ss_pred HccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 653 WLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 653 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
..... ........++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223345788999999987766653 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
+.+.|++++++|+|+|+++|+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999998877999999999986 578899999999 5 79999998753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=306.67 Aligned_cols=200 Identities=24% Similarity=0.301 Sum_probs=161.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEE
Confidence 45899999998852 113589999999999999999999999999999999998764 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
+.. ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ + +. ..+.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCH
Confidence 532 234567999999998776 59999996521 11211 1233333 2 22 2457999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++ |+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~-g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDA-GEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEec
Confidence 99999999999999999999999999999999999999999985 5899999999986 344 4899999985 789888
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 205 g~~ 207 (207)
T cd03369 205 DHP 207 (207)
T ss_pred CCC
Confidence 763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=352.99 Aligned_cols=212 Identities=25% Similarity=0.307 Sum_probs=173.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEE
Confidence 46999999999852 12479999999999999999999999999999999998774 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g~~ 689 (1140)
... ..+++.++||+|++.+++ .|++||+.++. +..++++. .++++..++ .+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHHH----HHHHHHhCcHHHHHhccccccchhcCC
Confidence 643 356788999999998886 79999998752 12233332 233333332 23345666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 469 ~-~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 G-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ 544 (585)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC
Confidence 3 5699999999999999999999999999999999999999999998874 5899999999985 3477999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 545 -G~i~~~g~~~ 554 (585)
T TIGR01192 545 -GRLIEKGSFQ 554 (585)
T ss_pred -CEEEEECCHH
Confidence 8999999853
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=320.46 Aligned_cols=213 Identities=22% Similarity=0.295 Sum_probs=166.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++|++++|+. .++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCE
Confidence 346999999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~ 688 (1140)
++.. ...++.++|++|++.+++ .|++||+.... ....+ .+.++++..++.+.. ++..+.
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 7643 235677999999998776 59999985321 11111 122333333332211 122221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. ++.|+|+++|+++ .+. .+||+++|+
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEE
Confidence 245799999999999999999999999999999999999999999999874 5899999999987 454 499999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 229 ~-G~i~~~g~~~ 239 (257)
T cd03288 229 R-GILVECDTPE 239 (257)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=355.82 Aligned_cols=201 Identities=29% Similarity=0.450 Sum_probs=168.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 47999999999962 123589999999999999999999999999999999998874 48999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+.+ ..+++.++||+|++.+++ .|++||+.++. +..+++ .++++++..++.+ -.||.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 457788999999999886 69999998752 122332 2456666666543 346777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 5699999999999999999999999999999999999999999999875 5899999999985 46789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=301.57 Aligned_cols=176 Identities=28% Similarity=0.444 Sum_probs=146.5
Q ss_pred EEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc
Q 001146 543 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 622 (1140)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 622 (1140)
+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 1 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~ 65 (180)
T cd03214 1 EVENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS 65 (180)
T ss_pred CeeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc
Confidence 3678888874 13589999999999999999999999999999999998764 48999999987642
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 623 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 623 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
..+++.++|++| +++.+++.+..+.. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~ 103 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGER 103 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHH
Confidence 123344666666 45556666544443 356999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999998766 899999999986 57789999999985 7887654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=279.31 Aligned_cols=194 Identities=22% Similarity=0.354 Sum_probs=166.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 641 (1140)
++.++|+++|+.+++||..+|.||||||||||+|+++.+.++ .+|.+++.|++++. +.+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 456799999999999999999999999999999999998774 58999999998754 568899999999999998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
-||++|+.|...+|.... + ++...+.++.+++.+..-+. .+..||||||||++|+|-|..-|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 699999999887764322 1 23356788888887643222 24679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 722 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|+||+.+++.+-+.|.++. ++.+.++.+||++. +..+.+||++-+.. |+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~ 211 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GH 211 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Cc
Confidence 9999999999999998886 67899999999987 56788999999986 44
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=328.67 Aligned_cols=199 Identities=25% Similarity=0.333 Sum_probs=158.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+.-++++|+++.|+ +++.+++++||.+++|+.+||+||||+|||||||+|+|...+ .+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc
Confidence 34689999999885 225799999999999999999999999999999999997664 3788876421
Q ss_pred ccCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCH
Q 001146 619 PKKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~LSg 696 (1140)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++.... .+. ++.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCH
Confidence 2479999986 3347779999886431 1111 34467889999887432 233 457999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+.++|.+. .-|||+|+||.. .+-..+++++.+.+ +-..|.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999999765 459999999975 57788999999985 333444
Q ss_pred CC
Q 001146 777 GP 778 (1140)
Q Consensus 777 g~ 778 (1140)
|.
T Consensus 518 g~ 519 (530)
T COG0488 518 GG 519 (530)
T ss_pred CC
Confidence 55
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=293.22 Aligned_cols=165 Identities=26% Similarity=0.380 Sum_probs=143.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 i~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 368899988741 23589999999999999999999999999999999998763 4899999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
+.++|++|++.++ ..|++||+.+. . .+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999998764 57999998642 0 24699999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ..+.+|++++|+++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999875 689999999975 4578999999998774
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=318.74 Aligned_cols=251 Identities=22% Similarity=0.312 Sum_probs=202.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.+.| .+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEe
Confidence 478889888774 45689999999999999999999999999999999999884 489999999986
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.- ...+..||+|.|+..+.|++||.||+..+..-......+....+++++++.+..||.-..|.++ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 43 3356689999999999999999999998764332223455566677899999999987777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||.|-++|.++|++|+|||||+-|-|....++.+.|++++++|+|||++||.+. |+.+.+||+.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 89999999999985 788766
Q ss_pred CC-CCc-chhHHHHHHhh-CCCCcCCCCCCCcccceeecc
Q 001146 777 GP-LGR-HSCHLISYFEA-IPGVQKIKDGYNPATWMLEVS 813 (1140)
Q Consensus 777 g~-~~~-~~~~~~~~f~~-~~~~~~~~~~~npad~~l~~~ 813 (1140)
-+ ..+ ...++.+..-. --..+.......|.+.++++-
T Consensus 222 ~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~ 261 (501)
T COG3845 222 VDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVE 261 (501)
T ss_pred ecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEe
Confidence 65 322 12333332211 001111123356677777664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=346.10 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=172.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccc
Confidence 78999999884 23489999999999999999999999999999999998763 4799999987653
Q ss_pred c---ccccceEEEeccCCCC--C------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q---ETFARISGYCEQNDIH--S------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.. + ..+|++|++.+. . +.+++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------V-KDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------h-hHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998642 1 146888877531 1 12345788999999988777654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~- 210 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD- 210 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999877999999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 211 G~i~~~~~~~ 220 (490)
T PRK10938 211 CTLAETGERE 220 (490)
T ss_pred CEEEEeCCHH
Confidence 8999999864
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=349.30 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC---cEeEE
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p---~illl 717 (1140)
+||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865432 1 1123578889999752 3443 3569999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999888999999999985 346899999994 479999999863
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=354.16 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=176.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+.. .++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999999621 124589999999999999999999999999999999998774 48999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+++ ..+++.++|++|++.+++ .|++||+.++. ++.+++ .++++++..++.+ -.|+.+|..
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDATDE----EVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 653 456778999999998876 79999998742 122332 2455666665542 245666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
...||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ 549 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999875 5899999999974 5678999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 550 -g~~~~~g~~~ 559 (576)
T TIGR02204 550 -GRIVAQGTHA 559 (576)
T ss_pred -CEEEeeecHH
Confidence 8999999853
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=290.14 Aligned_cols=158 Identities=27% Similarity=0.416 Sum_probs=138.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECC
Confidence 46889999884 23589999999999999999999999999999999998764 4899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 12345667666 9999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++.+.+|++++|++ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999999777999999999975 57788999999985 78764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=293.74 Aligned_cols=217 Identities=22% Similarity=0.354 Sum_probs=181.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
..-++++||++.+. +++||+|+|++|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r~-------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRRN-------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEEC-------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 34589999999874 577999999999999999999999999999999999987753 899999998
Q ss_pred ccCc----ccccceEEEeccC--CCCCCCCCHHHHHHHH--HHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ----ETFARISGYCEQN--DIHSPFVTIYESLLFS--AWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+... .+.|+.||+|.-+ ..+.+..+|+|-+.-+ +...... ..+ ++..+++..+++.+|+.+.+|...
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~-~~~~~~a~~lle~~g~~~la~r~~--- 169 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHLADRPF--- 169 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCC-HHHHHHHHHHHHHcchhhhccCch---
Confidence 7643 4568899999643 3344567888876532 2222222 333 445667899999999999998875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..||-|||||+-|||||+.+|++|+||||++|||...+..+.+.|.+++.. +.++|++||++. |+-..+++++++
T Consensus 170 --~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 170 --GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred --hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 469999999999999999999999999999999999999999999999865 789999999987 788999999999
Q ss_pred ecCCEEEEECC
Q 001146 768 KRGGQEIYVGP 778 (1140)
Q Consensus 768 ~~gg~~~~~g~ 778 (1140)
++ |+++++|.
T Consensus 247 ~~-g~v~~~g~ 256 (257)
T COG1119 247 KE-GEVVAQGK 256 (257)
T ss_pred eC-Cceeeccc
Confidence 85 89999874
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=345.32 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=168.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 47999999999962 13489999999999999999999999999999999998774 48999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..+++.++||+|++.+++ .|++|| . ... .++.++++++.+++.+..+...|......|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 753 356788999999988776 577776 0 111 12346778888888754332111111246999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.+|++++|++ |+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999876543 5899999999974 5778999999986 77776
Q ss_pred ECC
Q 001146 776 VGP 778 (1140)
Q Consensus 776 ~g~ 778 (1140)
...
T Consensus 530 ~~~ 532 (547)
T PRK10522 530 LTG 532 (547)
T ss_pred ecC
Confidence 533
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=297.57 Aligned_cols=191 Identities=19% Similarity=0.289 Sum_probs=157.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+++ +|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 67899999884 123555 9999999999999999999999999999998764 4899999998765
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ++.++|++|++.+++.+||+||+.+..... . .++.++++++.+++.+..+.. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 345899999988888899999998764322 1 123467888999988766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
++|||||+++|++++|||||+|||+.++..+.+.|++..++|+|+|+++|+++ ..+.+|-+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877677999999999986 23445544
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.22 Aligned_cols=184 Identities=28% Similarity=0.396 Sum_probs=158.6
Q ss_pred EeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 001146 585 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 663 (1140)
Q Consensus 585 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 663 (1140)
|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|....+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999998764 48999999987643 223567999999999999999999999976433 12334
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-
Q 001146 664 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 742 (1140)
Q Consensus 664 ~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~- 742 (1140)
+.+++++++++.+++.+..++.. +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44566889999999988777653 579999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 743 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 743 g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+|+|++||++. ++.+++|++++|++ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999986 68889999999985 8999999874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.16 Aligned_cols=166 Identities=31% Similarity=0.502 Sum_probs=143.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++. .+..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhh
Confidence 357888888742 112589999999999999999999999999999999998764 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 234567999999987765 5888776 99999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.. +|++++|++
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999854 799999999986 4555 999999986
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=300.85 Aligned_cols=194 Identities=22% Similarity=0.387 Sum_probs=149.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----
Confidence 46889998874110 0013589999999999999999999999999999999998763 489999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~~L 694 (1140)
.++|++|++.+++ .|++||+.+... ...+. ..+.++.+++.+.. ++.... ....|
T Consensus 67 ------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQN-GTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhcc-CcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 4899999998874 799999987421 11111 22333333332211 112222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||||||++|||+|+.+|++++|||||+|||+.+++.+.+ .++++.++|+|||+++|+++ .+.. +|++++|++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~ 202 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN 202 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence 9999999999999999999999999999999999999988 46666666899999999986 4555 999999986
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=302.61 Aligned_cols=198 Identities=24% Similarity=0.321 Sum_probs=153.9
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
+.|+.+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 3 ~~~~~~~~~------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~ 68 (218)
T cd03290 3 VTNGYFSWG------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEP 68 (218)
T ss_pred eeeeEEecC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccc
Confidence 456777764 124589999999999999999999999999999999998763 48999999986532
Q ss_pred ------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCC
Q 001146 623 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLP 689 (1140)
Q Consensus 623 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~ 689 (1140)
...++.++|++|++.++ ..|++||+.+... ...+ ..+++++.+++.+..+ +..+.
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 136 (218)
T cd03290 69 SFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE- 136 (218)
T ss_pred cccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc-
Confidence 12346799999998877 5799999987421 1111 1234555555543221 11111
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+ .++.+.++|.|+|+++|+++ .+ ..+|++++|
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 214 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM 214 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence 246799999999999999999999999999999999999999998 66666666899999999986 34 579999999
Q ss_pred ec
Q 001146 768 KR 769 (1140)
Q Consensus 768 ~~ 769 (1140)
++
T Consensus 215 ~~ 216 (218)
T cd03290 215 KD 216 (218)
T ss_pred cC
Confidence 85
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=312.47 Aligned_cols=216 Identities=27% Similarity=0.418 Sum_probs=181.4
Q ss_pred CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc
Q 001146 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 616 (1140)
..++.+.|+||+|.|+ +++++|+|+||++++|+.+|++||||+||||++++|-...+ ..+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 4467799999999996 34678999999999999999999999999999999987665 568999999
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccC
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
|+++.. ...|+.+|.||||-.++. -|...|+.|+. +..+.++..+ .+.+.++ .+.+..|+.||.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 998753 567889999999888875 68888888762 3344444332 2333333 356678999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.|.+ |||||||||+|||+++++|+||+|||+||+||..++++++..|++.. .|+|.+++.|+++. + --+|.+++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEee
Confidence 8775 99999999999999999999999999999999999999999999986 59999999999874 3 4579999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|..
T Consensus 472 ~-g~i~erg~h 481 (497)
T COG5265 472 N-GRIVERGTH 481 (497)
T ss_pred C-CEEEecCcH
Confidence 6 899999985
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=278.23 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC-cc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 619 (1140)
.++.+||+.+.+ +..+|+|+||++.|||+-+|+|||||||||++++|+|...+ ..|++.++| .+
T Consensus 5 iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchh
Confidence 477888887763 46689999999999999999999999999999999998764 489999999 55
Q ss_pred cCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 620 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+.. +-.+..||-=+|.|..|+.+||+|||..+.....+ .... .+.+++++++++..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh--
Confidence 533 12345678889999999999999999987543211 1122 2334578999999999999988754
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|++++. +++|+++.||+. .+.+++|+|.+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 4999999999999999999999999999999999999999999999875 789999999987 68899999999996
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|.+...|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 7999999864
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=338.33 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhh---CCcEeE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 716 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~---~p~ill 716 (1140)
.+||.|.+.|...+. .. ....++++.+||... .+.. .+.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 357777777765432 11 123567888898652 3433 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999985 346799999993 479999999863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=301.60 Aligned_cols=200 Identities=20% Similarity=0.225 Sum_probs=158.8
Q ss_pred eeeCceEEEe-----CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 569 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 569 iL~~vs~~i~-----~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
.++|++++++ +||+++|+||||||||||+++|+|..++ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 4667777765 7999999999999999999999998764 4799999884 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+|++.+...... .. ....+++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----TH---PYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----cc---HHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 11 123567889999987766653 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEE--EECCCCcchhHHHHHHhhC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~--~~g~~~~~~~~~~~~f~~~ 793 (1140)
||+.++..+.+.|+++++ .|+|||+++|++. .+..++|++++|++ +..+ ..+++....+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 999999999999999875 4899999999986 57778999999963 3222 3344433333566676655
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=340.06 Aligned_cols=219 Identities=23% Similarity=0.338 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|++.+||+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 48899999998521 1234689999999999999999999999999999999998764 489999999886
Q ss_pred Ccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... . .++.++|++|++.+++.+|+.||+.+..... ....++.++.+.++++.+++.+..|... +.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 431 1 2467999999999999999999998865432 1233445566789999999987766653 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+++|++|+|||||+|||+.+++.+.+.|+++.++|+|+|+++|+++ ..+.|||+++|++ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999975 4467999999985 899
Q ss_pred EEECCCCc
Q 001146 774 IYVGPLGR 781 (1140)
Q Consensus 774 ~~~g~~~~ 781 (1140)
+..|+.++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999853
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=290.70 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=168.2
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEec-cCCCCCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPFVT 643 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 643 (1140)
..+++|+||+|++|++++++|||||||||+||+|+|... +.+|.|.++|...-. +.+-+.+++|+ |...+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 358999999999999999999999999999999999877 458999999986532 23334556553 3334444455
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
+.|.+.....++ +++.++-+++.+.+.+.+++++..+..+ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 667766544443 4455666677899999999998777764 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||..++..+.+.|++..+ ++.||+.+||+.+ ++..+||||++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999864 5899999999998 89999999999986 8999999973
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=304.27 Aligned_cols=202 Identities=20% Similarity=0.344 Sum_probs=158.1
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE
Q 001146 536 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 615 (1140)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 615 (1140)
+.....++++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~-~--------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLV-G--------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEe-c--------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 344567999999974 1 2379999999999999999999999999999999998764 4899999
Q ss_pred cCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 001146 616 SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 688 (1140)
Q Consensus 616 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~ 688 (1140)
+| .++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+.. ++.++.
T Consensus 97 ~g----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG----------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC----------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 3899999988877 4999999874211 111 122333334443221 222221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|++. .+ ..+|++++|
T Consensus 156 -~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 156 -GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 23579999999999999999999999999999999999999998865 5554 5799999999986 34 679999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |++++.|++.
T Consensus 232 ~~-G~i~~~g~~~ 243 (282)
T cd03291 232 HE-GSSYFYGTFS 243 (282)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=338.45 Aligned_cols=211 Identities=18% Similarity=0.220 Sum_probs=168.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+..+ ..++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 335 ~~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~ 404 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGA 404 (555)
T ss_pred CceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 35799999999996210 0123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-ccCCCCCcC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-VGLPGVSGL 694 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~~~~~L 694 (1140)
++.. ..+++.++||+|++.+++ .|++||.. +.. .++.++++++.+++.+..+.. .|......|
T Consensus 405 ~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~--------~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 405 AVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG--------EHA----SLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred ECCCCCHHHHHhhCcEEccChhhhh-hhhhcccc--------cch----hHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 8754 346788999999988776 57777731 111 223467888888887654432 222223569
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .+..+|+|+|+++|+++ ..+.+|++++|++ |++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999998764 45556899999999975 5678999999985 787
Q ss_pred EE
Q 001146 774 IY 775 (1140)
Q Consensus 774 ~~ 775 (1140)
+.
T Consensus 549 ~~ 550 (555)
T TIGR01194 549 VK 550 (555)
T ss_pred EE
Confidence 64
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=292.80 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=153.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-EcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 79999999999999999999999999999999998764 479986 666432 12345667889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+.+...... .+.++. .+.+.+..++.+..++.+ +.||||||||++|||||+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765431 222221 233445567776666654 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhh
Q 001146 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 792 (1140)
Q Consensus 728 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~ 792 (1140)
++..+.+.+.+..+ ++|+|+++|+++ .+.+.+|++++|++ |++++.|+.+ .+.+++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~----~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA----QATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH----HHHHHHHH
Confidence 99999998865443 478999999986 57788999999985 8999999874 34455443
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=288.78 Aligned_cols=190 Identities=26% Similarity=0.338 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|++..++...... ......+++||||+|++||+++|+|+||||||||-++|.|+.. +++|+|.++|.++
T Consensus 4 ll~v~~l~k~f~~~~~~~----~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i 77 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFG----KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDI 77 (268)
T ss_pred eEEEeccEEEEecccccC----cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcch
Confidence 378899998887542200 0113579999999999999999999999999999999999887 4589999999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqr 699 (1140)
.... .+++.+++.++++.+|+.. ..++ ..++||||||
T Consensus 78 ~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQr 115 (268)
T COG4608 78 TKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQR 115 (268)
T ss_pred hhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhh
Confidence 4321 3345567899999999765 2333 2478999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|.. |+++..|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~ 193 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGP 193 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecC
Confidence 9999999999999999999999999999999999999999765 999999999987 57889999999996 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
.+
T Consensus 194 ~~ 195 (268)
T COG4608 194 TE 195 (268)
T ss_pred HH
Confidence 64
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=333.49 Aligned_cols=224 Identities=28% Similarity=0.386 Sum_probs=195.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+..+|++..|... ++ +++++|+.|++||+.+++|||||||||++|+|+|..+ +.+|++.++|.+
T Consensus 563 ~~~~~~~L~k~y~~~-----------~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~ 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----------DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHD 628 (885)
T ss_pred ceEEEcceeeeecch-----------hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCc
Confidence 356778888777521 11 7999999999999999999999999999999999877 458999999998
Q ss_pred cCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
+.. .+.++.+||+||+|.+++.+|.||++.+.++++. ....+-++.++..++.++|.+.+|+.++ .+|
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~yS 700 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYS 700 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCC
Confidence 753 2367889999999999999999999999999884 3334445568999999999999998864 599
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||+|||+++|.||+.+|++++|||||+|+||.+++.+++.++++.++|+.+|.|||..+ |...+|||+.+|.+ |++..
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~c 778 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRC 778 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEE
Confidence 99999999999999999999999999999999999999999999888889999999986 78889999999996 79999
Q ss_pred ECCCCcchhHHHHHHh
Q 001146 776 VGPLGRHSCHLISYFE 791 (1140)
Q Consensus 776 ~g~~~~~~~~~~~~f~ 791 (1140)
.|++ +++...|.
T Consensus 779 iGs~----q~LKsrfG 790 (885)
T KOG0059|consen 779 IGSP----QELKSRYG 790 (885)
T ss_pred ecCh----HHHHhhcC
Confidence 9997 56666654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=329.99 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=167.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 67899999884 23589999999999999999999999999999999998764 4799999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHH-c-----------cCCC-CCC----------------HHHHHHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAW-L-----------RLSP-EVD----------------SETRKMFIDEV 672 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~-----------~~~~-~~~----------------~~~~~~~~~~~ 672 (1140)
+.++|++|++.+++.+||+|++.++.. . ..+. ... ..+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999988899999999986421 0 0000 000 01123467889
Q ss_pred HHHcCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 001146 673 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751 (1140)
Q Consensus 673 l~~~~l~~~~-~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H 751 (1140)
++.+|+.+.. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 232 357999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhhceEEEEecCCEE-EEECCCC
Q 001146 752 QPSIDIFEAFDELFLMKRGGQE-IYVGPLG 780 (1140)
Q Consensus 752 ~~~~~~~~~~d~v~~l~~gg~~-~~~g~~~ 780 (1140)
+++ .+.+.||++++|++ |++ ++.|+.+
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 986 57889999999985 788 5888763
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=256.71 Aligned_cols=191 Identities=25% Similarity=0.319 Sum_probs=162.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~ 620 (1140)
++.+||+... ++.-.|.++|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|++++
T Consensus 3 l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 3 LCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred eeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 5678887543 2356899999999999999999999999999999999966543 4689999999987
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
+. ..-+|++|+.+||+.+||.++|.+|+.|+. +.....+.|++.++..++..||....+.- ...||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchH
Confidence 64 234688999999999999999999999864 44455567788889999999999887764 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecCCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~~~ 754 (1140)
-||++-|+|+..|+.++||||+|.||..-+.++.+..-. ....|..+|.+|||..
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999999999999999999998887654 3456999999999865
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=330.10 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. +++++|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 589999999884 124589999999999999999999999999999999998764 4799998752
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHH-cc------------CCCCCCH--------------------HHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LR------------LSPEVDS--------------------ETRKM 667 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~~--------------------~~~~~ 667 (1140)
..++||+|++.+++.+||.||+.++.. .+ ....... .+.+.
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987531 00 0000000 01134
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 001146 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747 (1140)
Q Consensus 668 ~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 747 (1140)
+++++++.+|+.. .+.. +..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778889999853 4544 3579999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 748 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 748 ~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
++||+++ .+.+.+|++++|++ |+++ |.|+.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 245 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence 9999986 57788999999996 7876 77875
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=297.32 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=156.3
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCcc--c-cc--ceEEE
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE--T-FA--RISGY 631 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 631 (1140)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 4799999 5999999999999999999999999998774 489995 778765321 1 11 23689
Q ss_pred eccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 001146 632 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711 (1140)
Q Consensus 632 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~ 711 (1140)
++|....++ .++.+++.+.. + ....++.++++++.+++.+..+.. .+.||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 112234578899999998766654 357999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 712 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|+ |++.++|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999986 5667899999996 457665543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=287.84 Aligned_cols=225 Identities=22% Similarity=0.290 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++.+|++..+... .+...+++||||++++||.+||+|.||||||-..+.+.|+.++. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 37888988877532 24577999999999999999999999999999999999865432 3478999999
Q ss_pred cccCc---cccc----ceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 618 YPKKQ---ETFA----RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~---~~~~----~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.+.-. ...+ ..|++++|+| .+.|..|+.+.+.-..++. .+.+.++.++++-++++.+|+.+....+...
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 87532 2222 4689999998 4667778877665544433 3456666677889999999998877666544
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.++|||||||||.||.||+.+|++|+.||||++||..-+.+|+++|+++.++ |..++++|||++ -+.+++|||++|
T Consensus 155 --PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 --PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred --CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 4689999999999999999999999999999999999999999999999754 999999999997 477889999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
.+ |+++..|+.+
T Consensus 232 ~~-G~ivE~~~t~ 243 (534)
T COG4172 232 QH-GEIVETGTTE 243 (534)
T ss_pred ec-cEEeecCcHH
Confidence 96 8999999864
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=326.77 Aligned_cols=207 Identities=25% Similarity=0.362 Sum_probs=164.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---
Confidence 478999999884 123589999999999999999999999999999999998764 479999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL-----------SPEVDSE---------------------TRKM 667 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 667 (1140)
+..++|++|++.+++.+||+||+.++... +. ......+ +.+.
T Consensus 67 -----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 67 -----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred -----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 24589999999999999999999875321 00 0000010 0113
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 001146 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747 (1140)
Q Consensus 668 ~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 747 (1140)
+++++++.+++.. .+.. ++.|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhhceEEEEecCCEEE-EECCCC
Q 001146 748 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 780 (1140)
Q Consensus 748 ~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~~ 780 (1140)
+++|++. .+...+|++++|++ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999986 57788999999986 7865 778753
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-32 Score=269.37 Aligned_cols=220 Identities=26% Similarity=0.352 Sum_probs=173.0
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCccc---ccceEEEeccCC--CCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARISGYCEQND--IHS 639 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~--~~~ 639 (1140)
..+++|+++|++|..|+++.|+|.||||||||+|+|+|... +.+|+|.++|.+++... ....++-|+|+| -.+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 45679999999999999999999999999999999999877 45899999999986532 234567789987 458
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHH--cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDS---ETRKMFIDEVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
|.+|+.||+..+........... +.+++...+-++. +|+++..++.+|. |||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcE
Confidence 99999999998754322222222 2333333444444 4667777777653 999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcc----hhHHHHH
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH----SCHLISY 789 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~----~~~~~~~ 789 (1140)
|+|||-|++|||.++..|++.-.++.+ .+.|.+++||.+. +..++-+|.++|++ |+++.+=.-++. ..++.+.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlDv~g~~k~~L~v~dli~~ 247 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLDVTGEEKASLTVLDLIQM 247 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEEcccccccCCcHHHHHHH
Confidence 999999999999999999999988865 4789999999987 68899999999985 899976433221 2345556
Q ss_pred HhhC
Q 001146 790 FEAI 793 (1140)
Q Consensus 790 f~~~ 793 (1140)
|+.+
T Consensus 248 F~~~ 251 (263)
T COG1101 248 FEKI 251 (263)
T ss_pred HHHH
Confidence 6644
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=272.33 Aligned_cols=156 Identities=23% Similarity=0.323 Sum_probs=131.0
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++++ +++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC--------
Confidence 35678885 89999999999999999999999999998764 48999999852 678877421
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE--CCCCcchhHHHHHHh
Q 001146 726 ARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRHSCHLISYFE 791 (1140)
Q Consensus 726 ~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~--g~~~~~~~~~~~~f~ 791 (1140)
+.++..+.+.++++++++ .|+|+++|++. .+.+.+|++++|+++ -.++. |++....+.+-.|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGE-PGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCC-CccceeccCCcchhHHHHHHHH
Confidence 999999999999987665 99999999986 567789999999864 44544 776543344455554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=329.36 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=160.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||++.++ +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 450 ~~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--
Confidence 4699999999874 123589999999999999999999999999999999998653 368888753
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCcccccccccC----CCCCc
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGL----PGVSG 693 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~----~~~~~ 693 (1140)
++.++||+|++.+++. |++||+.+...... ..... ++.++++++.+++.+..+...|. .....
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~ 582 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDV 582 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccC
Confidence 4568999999988876 99999987532110 01111 23467888989988765443221 11357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.+|
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999998875 3899999999986 468899999997544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=299.03 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=155.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..+.++||+|.|+.. ..++++++|-+.+++.+|+|||||||||||||++.|...+ ..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~~------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCCc------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 3468899999998621 2479999999999999999999999999999999998763 4677654322
Q ss_pred ccCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 619 PKKQETFARISGYCEQN--DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. .+++..|. +.+.-..++-|++.=.. .++.+.+.+..++..+||....+.. ..+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 12233332 22222356666654221 1123445578899999998544433 2568999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||+||..|+.++..|.+|+|||||+|||..+...+-++|.+. .-+||.++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999888764 458999999987 478889999999988888888
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 874
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=270.62 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=127.3
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
.+.+|+|+||++++||+++|+|||||||||||++|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4568999999999999999999999999999999953 2688888876321 11334677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhC--CcEeEEeCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 722 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~--p~illlDEPts 722 (1140)
.++++.+++.+. .+.. .+.||||||||++|||+|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777542 3443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||+.++..+.+.|+++.+.|+|||+++|+++ . .+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 99999999999999998777999999999986 3 478999999975
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=263.70 Aligned_cols=142 Identities=27% Similarity=0.410 Sum_probs=127.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|.. ..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 l~~~~l~~~~~~-------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYGG-------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEECC-------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---
Confidence 367888887741 2589999999999999999999999999999999998764 4899999984
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 35788888 99999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|+++ ++.+.+|++++|++
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~ 142 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED 142 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999876 479999999986 57788999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=354.22 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=166.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+|++.
T Consensus 613 ~~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-----
Confidence 469999999999631 124589999999999999999999999999999999998763 355442
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~~ 692 (1140)
..++.++||+|++.+++ .|++||+.|+. ..+++ +.+++++..++. +-.+|.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCC------ccCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 24667999999999886 79999999863 12322 245555555543 445688887664
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++||||+.++|+|++||||||+||+.+++.+.+. ++.. .+|+|+|++||+++ ....+|+|++|++ |
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-G 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-C
Confidence 5999999999999999999999999999999999999988765 4443 35899999999985 5778999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 816 ~i~~~Gt~~ 824 (1495)
T PLN03232 816 MIKEEGTFA 824 (1495)
T ss_pred EEEEecCHH
Confidence 999999864
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=351.56 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=167.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE-EEEEEcCc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~-G~i~~~g~ 618 (1140)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--- 677 (1622)
T ss_pred CceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---
Confidence 369999999999631 12458999999999999999999999999999999999876 347 78864
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCC
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 691 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~ 691 (1140)
++.++||+|++.+++ .|++||+.|+. ..++ ++.+++++.++|. +-.+|.+|..|.
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGS------PFDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCC------cccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence 456899999999886 79999999863 1222 2356666666654 335778887654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.||||||||++||||+.++|+|++||||||+||+.+++.+.+ .++... +|+|+|++||+++ ....+|+|++|++
T Consensus 740 -~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~- 814 (1622)
T PLN03130 740 -NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE- 814 (1622)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-
Confidence 599999999999999999999999999999999999988764 555543 5899999999975 5788999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=265.30 Aligned_cols=228 Identities=21% Similarity=0.282 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCch----hh------h-cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceE
Q 001146 541 SLTFDEVVYSVDMPEE----MK------V-QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 609 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~----~~------~-~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~ 609 (1140)
.+.++||+..++.... .+ . .........+|+||||++++||.++|+|+||||||||||+|+|..+| .
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--T 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--C
Confidence 4788888887765431 10 0 11134567899999999999999999999999999999999998874 5
Q ss_pred EEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 610 TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 610 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+|+|.++|.-..... -.--+.|.+|.+||+.+.+.+. ..+.++.++.++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 899999996432111 1122346799999999877654 4567777888999999999999999875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+.+|.||+-|++.|.|...+|+||++||..+--|+.=++.-.+.++++.++++|+|+++|+++ .+.+.|||+++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 679999999999999999999999999999999999999999999999888899999999987 68999999999985
Q ss_pred CCEEEEECCCCcchhHHHHHHhhC
Q 001146 770 GGQEIYVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 770 gg~~~~~g~~~~~~~~~~~~f~~~ 793 (1140)
|++.+.|.++ ++.++|...
T Consensus 223 -G~i~~~G~~~----~vi~~Y~~~ 241 (249)
T COG1134 223 -GQIRMEGSPE----EVIPAYEED 241 (249)
T ss_pred -CEEEEcCCHH----HHHHHHHHh
Confidence 8999999984 566666553
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=282.37 Aligned_cols=221 Identities=19% Similarity=0.316 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++..-+ .+.+.++||||++++||+++|.|-.|-|-+.|+.+|+|..++ .+|+|.++|+++
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEec
Confidence 478888886532 113469999999999999999999999999999999998753 359999999986
Q ss_pred ----Cc-ccccceEEEeccCC---CCCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 621 ----KQ-ETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 621 ----~~-~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
+. ...+..++|||+|. -+.+.+|+.||+.+...-+. ..-.+....++...++++.++.......
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 22 22345789999986 45678999999987654321 1123445566778899999988632221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...+.||||++||+-+||+|.++|++|+..+||.|||..+...+.+.|.+.+++|+.|++++-+++ ++++++||+.+|.
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~ 477 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY 477 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee
Confidence 124679999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++...++++
T Consensus 478 ~-Gri~~~~~~~~ 489 (501)
T COG3845 478 E-GRIVGIVPPEE 489 (501)
T ss_pred C-Cceeccccccc
Confidence 5 89999888764
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.15 Aligned_cols=178 Identities=26% Similarity=0.325 Sum_probs=155.6
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 642 (1140)
++.+++.++||++.+||.+-|.|||||||||||++|+|...+ .+|+|.++|.++.. +.+++.+-|+...+-+-+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 456799999999999999999999999999999999998774 48999999988754 23456677888888889999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
||.|||.|-..+... .+ ...+.++++.+||....|..+ ..||-||||||+|||-+++.+++.+||||++
T Consensus 91 Ta~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccch-----hhcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999998765432 11 233688999999999999886 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCH
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 755 (1140)
+||.+....+-..+..-+.+|-.||.+||||..
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999998888889999999999864
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=248.29 Aligned_cols=203 Identities=25% Similarity=0.326 Sum_probs=173.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC--CCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI--HSPF 641 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ 641 (1140)
..+++.|||+++.|+.+|++|.||||||||.|+|+|... |.+|+|.+||++..-. ...+++-+++||+. +-|.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 457999999999999999999999999999999999887 4589999999987432 23467899999974 5567
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.+.+-|.... ++..+.+.+.|.+++.+.++.+||.+- ++.. ++.||-||||||++||||+.+|+|++.||+
T Consensus 104 l~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 104 LRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 77777666554 445677788889999999999998653 3332 467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
..+||...+.++.++.-++.++ |.+-|.++.+.. -+-.+.|+|++|++ |+++..|.+.
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t~ 235 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGSTA 235 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCChh
Confidence 9999999999999999998754 999999999987 47889999999996 7999999874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=312.84 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=156.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|. ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|..
T Consensus 2 i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--
Confidence 67899999884 34689999999999999999999999999999999998764 48999998742
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSA-----------------------WLRL-SPEVDSETRKMFIDEVMELVE 677 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~~~ 677 (1140)
.++|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 245544332100 0000 000000112346788999999
Q ss_pred Cc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 678 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 678 l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||+++||.. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556554 469999999999999999999999999999999999999999998765 569999999986 5
Q ss_pred HHHhhceEEEEecCCEEE-EECCC
Q 001146 757 IFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 757 ~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
+.+.||++++|++ |++. |.|+.
T Consensus 209 l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEeC-CEEEEecCCH
Confidence 7789999999985 6775 66754
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=256.27 Aligned_cols=151 Identities=33% Similarity=0.548 Sum_probs=131.8
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
++|+++.++ ++.+|+++|+++++||+++|+||||||||||+++|+|..++ ..|++.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccC
Confidence 567887774 13589999999999999999999999999999999998764 48999999986542
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++.++|++| |||||+|
T Consensus 67 ~~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~ 87 (157)
T cd00267 67 PLEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQ 87 (157)
T ss_pred CHHHHHhceEEEee-----------------------------------------------------------CCHHHHH
Confidence 223456777777 9999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|++||++++.+|++++|||||+|||..++..+.+.++++.+.++|+++++|+++ ++...+|+++++++
T Consensus 88 r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998766899999999986 56677899999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=335.96 Aligned_cols=204 Identities=24% Similarity=0.384 Sum_probs=164.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-- 699 (1522)
T TIGR00957 635 NSITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-- 699 (1522)
T ss_pred CcEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--
Confidence 36999999999852 12358999999999999999999999999999999999876 3589999986
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc------CC-cccccccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV------EL-NPLRQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~l-~~~~~~~~g~~~~~ 692 (1140)
.++||+|++.++ +.|++||+.|+.. .+++. .+++++.+ +. .+-.++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~----~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKY----YQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 489999998876 4899999998531 22222 22333332 22 223356677654 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHH--hhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~--~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.||||||||++||||+.++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|++
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~- 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSG- 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecC-
Confidence 69999999999999999999999999999999999999999998653 235899999999986 3566999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 89999998643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=308.27 Aligned_cols=203 Identities=23% Similarity=0.289 Sum_probs=154.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++|++++|+|||||||||||++|+|...+ .+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--
Confidence 78999999884 24589999999999999999999999999999999998764 47999988632
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHH------------------------------HHccC-CCCCCHHHHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFS------------------------------AWLRL-SPEVDSETRKMFID 670 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~ 670 (1140)
.+++++|.+......+|.+++..+ ..+.. .......+.+.+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 246677654333334555543211 00000 00000011234578
Q ss_pred HHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe
Q 001146 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 750 (1140)
Q Consensus 671 ~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~ 750 (1140)
++++.+|+.. +.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||++|
T Consensus 141 ~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEe
Confidence 8999999863 443 3579999999999999999999999999999999999999999999876 35999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 751 HQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 751 H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
|++. .+.+.||+++.|++ |+++ |.|+.
T Consensus 211 Hd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 211 HDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred CCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 9986 57788999999985 7886 55764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=306.37 Aligned_cols=181 Identities=25% Similarity=0.267 Sum_probs=149.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCcc-----cccceEE
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE-----TFARISG 630 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 630 (1140)
..+|++++ .+++||+++|+||||||||||+|+|+|...+ ..|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 9999999999999999999999999998764 379997 888775321 1122356
Q ss_pred EeccCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH
Q 001146 631 YCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 707 (1140)
Q Consensus 631 ~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a 707 (1140)
+.+|.....|. .||+|++... +.+..++++++.+++.+..|+.+ ..||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 66665444333 3999998631 12235789999999988777764 5699999999999999
Q ss_pred HhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 708 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 708 l~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|.+
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999988 999999999986 67888999999973
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=328.64 Aligned_cols=191 Identities=21% Similarity=0.356 Sum_probs=151.6
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 5689999999999999999999999999999999998774 489999987 3899999999887 59999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHH--HHHHHcCC-cccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFID--EVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+.|+.. .+.+..++.++ .+.+.++. .+..++.+|..+ ..||||||||++||||++.+|+++||||||||
T Consensus 506 NI~~g~~------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLS------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhccc------cchHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9998632 11111111111 11122211 222345677654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 724 LDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 724 LD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||+.+++.+.+. ++++. +|+|+|++||+++ ....+|++++|++ |+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~~-g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLHE-GVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 999999999985 56654 4899999999986 3456999999985 89999998653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=234.87 Aligned_cols=211 Identities=28% Similarity=0.330 Sum_probs=156.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.++++..|. ...-.+||||++.|||+++|+|.|||||||||++|+++..+ ..|+|.+...+-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCC
Confidence 56677776663 22347899999999999999999999999999999999874 4788887653211
Q ss_pred --------ccc----ccceEEEeccCCCCCCCC------CHHHHHHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 001146 622 --------QET----FARISGYCEQNDIHSPFV------TIYESLLF-SAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682 (1140)
Q Consensus 622 --------~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 682 (1140)
+.. .|..-|+|.|+|.---.+ .+.|-+.- +++- . ...++...+.++.++++..+
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-----Y--G~iR~~a~~WL~~VEI~~~R 144 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-----Y--GNIRAEAQDWLEEVEIDLDR 144 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-----h--hhHHHHHHHHHHhcccCccc
Confidence 111 233469999986432222 23343321 1111 1 12234456788888776422
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhh
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 761 (1140)
.. ...+..|||++||+.|||-|++.|+++|+||||-|||..-+..+.+.++.+..+ |..++++|||.. -..-+.
T Consensus 145 --iD--D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla 219 (258)
T COG4107 145 --ID--DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLA 219 (258)
T ss_pred --cc--CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhh
Confidence 11 124679999999999999999999999999999999999999999999999754 999999999976 345568
Q ss_pred ceEEEEecCCEEEEECCCC
Q 001146 762 DELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~~l~~gg~~~~~g~~~ 780 (1140)
||.++|++ |+++..|-.+
T Consensus 220 ~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 220 DRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred hcceeecC-CCEecccccc
Confidence 99999985 8999999765
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=286.69 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|++.+|. .+++|+|+|+++.+|+.+||||+||||||||||+|+|...+ .+|+|...+.
T Consensus 3 ~i~~~~ls~~~g-------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAYG-------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEeeC-------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--
Confidence 478889998873 45799999999999999999999999999999999998764 4788876542
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc-------------CCCC--------------CCHHHHHHHHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-------------LSPE--------------VDSETRKMFIDEVM 673 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 673 (1140)
..++|++|++...+..||.+.+.-+..-. .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25899999999999999999886542100 0000 00001124567788
Q ss_pred HHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 674 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 674 ~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
..+|+.+. ++.+ +.||||||.||++|++|+.+|++|||||||++||..+...+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 579999999999999999999999999999999999999999999754 46 999999994
Q ss_pred CHHHHHhhceEEEEecCCEEEEECCC
Q 001146 754 SIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 754 ~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
..+-+.|++|+-+++|.-..|.|.-
T Consensus 211 -~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 211 -YFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred -HHHHHHhhheEEecCCceeEecCCH
Confidence 4677899999999975455566653
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=258.91 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=131.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHH-HHHhc--CCc--C--ceEEEEEEEcCc-ccCccccc-ceEEEeccCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DVLAG--RKT--G--GYITGNITISGY-PKKQETFA-RISGYCEQND 636 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 636 (1140)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ....+..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 34589999999999999999999999999995 44432 100 0 000000 00000 00001111 1223333333
Q ss_pred C--CCCCCCHH---HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 637 I--HSPFVTIY---ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 637 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
. ..|..+|. |...+...+. ..+...++ .+.++.+++.+ ..+.. +..||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 3222221111 11111222 46788899875 34544 35799999999999999999
Q ss_pred CC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE------ecCCEEEEEC
Q 001146 711 NP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM------KRGGQEIYVG 777 (1140)
Q Consensus 711 ~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gg~~~~~g 777 (1140)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ . .+.||++++| + +|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~-~~~~d~i~~l~~~~~~~-~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-T-IRAADHVIDIGPGAGVH-GGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-H-HHhCCEEEEeCCCcccc-CCEEEecC
Confidence 98 599999999999999999999999998878999999999985 3 4789999999 6 58999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=301.57 Aligned_cols=206 Identities=22% Similarity=0.383 Sum_probs=170.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|.+++-+.. +..+.|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS 583 (1381)
T ss_pred CceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe
Confidence 3468999999986521 12236999999999999999999999999999999999877 56899999884
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCC
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 691 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~ 691 (1140)
++||+|++.++. .|||||+.|+.. .++ ++.+++++.+.|. ..-.|.+|+.|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~------~d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP------YDE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc------ccH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999998875 899999999742 222 2356666666554 334567888776
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||+++|||+-+|++|+|||.|.|++|++..+++.+..-+..-+++|+|.+|||. +..+.+|.|++|++ |
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-G 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-C
Confidence 4999999999999999999999999999999999999988876544444689999999986 46889999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999854
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=319.13 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=146.8
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ ..||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 46799999999999999999999999999999999998764 47988752 4689999998876 47999
Q ss_pred HHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
||+.|... .+.+..+ ...++.++.+ .+-.++.+|.. ...||||||||++|||||+.+|++++||||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 99998421 1111111 1122233333 11123444543 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|++||+.+++.+.+.+.....+|+|+|++||+++ ..+.+|++++|++ |++++.|+.+
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999998887754322235899999999975 4578999999985 8999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-28 Score=296.99 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=144.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~ 618 (1140)
..|.++|++++|. ++.+|+|+||+|++|+.+||+|||||||||||++|+|+... -+..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4599999999984 23589999999999999999999999999999999986311 122455543322
Q ss_pred cc-----Cc------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH------------------
Q 001146 619 PK-----KQ------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE------------------ 663 (1140)
Q Consensus 619 ~~-----~~------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~------------------ 663 (1140)
.. +. ...++.+++++|++.+... ++.++... .. ....+.+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~---~~~~~~~~~~~r~~~~~~~~~~~~~ 317 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-AN---KDGVDKDAVSQRLEEIYKRLELIDA 317 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-cc---ccccchHHHHHHHHHHHHHHHhcCc
Confidence 11 00 0001123344443221110 11111000 00 0000111
Q ss_pred -HHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 664 -TRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 664 -~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
..++++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 1223456677777775 333443 3579999999999999999999999999999999999999999999875
Q ss_pred CCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 742 ~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
+.|+|+++|+.. .+.+.||++++|++ |++. |.|+.
T Consensus 391 -~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 391 -PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred -CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 689999999975 57788999999985 7886 66664
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=254.28 Aligned_cols=195 Identities=25% Similarity=0.293 Sum_probs=148.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-----c---CC--cC---ceEE------EEEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-----G---RK--TG---GYIT------GNITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-----g---~~--~~---~~~~------G~i~~~g~~~~~~~----- 624 (1140)
-|+|||.+|+.|++++|.|+||||||||++.+. . .. .+ .... --+.++..|+....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999998552 1 10 00 0111 23677776653210
Q ss_pred --------ccc----------------eEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 625 --------FAR----------------ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 625 --------~~~----------------~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
.|+ .+.|..++......+||.|++.|...++ ..++..++++.+||.+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCch
Confidence 010 1334555555567899999999875432 1123567899999976
Q ss_pred c-ccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 681 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 681 ~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|+|+++|++.
T Consensus 161 l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-- 233 (261)
T cd03271 161 IKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-- 233 (261)
T ss_pred hhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 3 4443 357999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred HHHhhceEEEEe-----cCCEEEEECCC
Q 001146 757 IFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 757 ~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
..+.+|+++.|. +||++++.|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 346799999994 47999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=237.84 Aligned_cols=134 Identities=34% Similarity=0.534 Sum_probs=118.3
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
|+|||+++++||+++|+||||||||||+++|+|...+ .+|.|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998763 58999999998765 346778999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
| ..++.++++++.+++.+..++.++... ..||||||||++||+||+++|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 122347889999999888888776543 6799999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=226.31 Aligned_cols=213 Identities=23% Similarity=0.273 Sum_probs=161.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
.+..+|++.+...... ..-..++|+|+||+++.||+++|=||||+||||||++|-|.+.+ .+|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEEEEeCcc
Confidence 4667777665543211 11245799999999999999999999999999999999997764 47888875432
Q ss_pred -cC-----c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 620 -KK-----Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 620 -~~-----~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++ . .-.++-+|||.|.-...|..+..|-+.-.+.-+ +...+.-+++..+++..+++.+..-.+ +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 123456899999877777766555443322222 344555566778899999987543332 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
....||||+|||.|||.++.+-+||+|||||+.||..++..+++++++.+.+|..+|=+-||-+ --...+||++-+..
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 3569999999999999999999999999999999999999999999998888999999999843 22457899988864
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=243.10 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=130.8
Q ss_pred e-eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-------ceEEEEEEEcCcccCcccccceEEEeccCCCCCCC
Q 001146 570 L-NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-------GYITGNITISGYPKKQETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 570 L-~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 641 (1140)
+ +++++++++| +++|+||||||||||+++|+|...+ +...|++.++|.+......++.+++++|++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 5 6799999999 9999999999999999999986422 112346777777654333457799999987665
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh----hCCcEeEE
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV----ANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~----~~p~illl 717 (1140)
|.. . . +++++++++. .+..+.. +..||||||||++||++|+ .+|++++|
T Consensus 89 --------~~~--~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI--I-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE--E-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 110 0 0 1235666665 3334443 3579999999999999997 46799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+...+
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 999999999999999999999865 789999999975 457899999998654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-27 Score=224.93 Aligned_cols=194 Identities=25% Similarity=0.437 Sum_probs=164.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
|-.+|+++..||+.-++|||||||||||..++|..+. +|+|.++|.+... .+..++.+|..|+..-...+.|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 7789999999999999999999999999999998753 7999999998754 345566789988776666688888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-----CC--cEeEEeC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 719 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~-----~p--~illlDE 719 (1140)
.+... . +..++...++++...+++.+...+. ++.|||||=|||-+|-..+. || ++|+|||
T Consensus 92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 87653 2 2345566788999999998766654 46799999999999987654 55 6999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|.++||...+..+-..|.+++.+|++||++.||++ ...+.+|++.+|++ |++...|..++
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999999999999999999999999999998 67889999999996 79999998764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=268.42 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=87.4
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +++.+|||||||||||||||++||+||+|||||||||++||..|+++|.+.. +++|+++|+ ||++|++.||+|
T Consensus 598 VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIA---HRLSTV~~Ad~I 672 (716)
T KOG0058|consen 598 VG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIA---HRLSTVRHADQI 672 (716)
T ss_pred cC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEe---hhhhHhhhccEE
Confidence 66 4556799999999999999999999999999999999999999999998755 468888888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+|+++|+++|.|+|+|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999995
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=230.84 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=144.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
|+==.+++..||+++++||||-||||+.++|+|..+++ +|+ .. .-.++|=||--.--...||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 33345677889999999999999999999999987743 554 11 123677777544445689999876
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
-...-+.... -...++++-|+|++..+..+ .+|||||.|||+||.+|.+++++.+||||++-||++.+
T Consensus 424 ~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 5433221111 12357888899998888875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC---cchhHHHHHHhhCC
Q 001146 730 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG---RHSCHLISYFEAIP 794 (1140)
Q Consensus 730 ~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~---~~~~~~~~~f~~~~ 794 (1140)
..+.+.+|+..+ .++|.+++-||.-. +--+.||+++.. |+.--+|... ...+.+..|.+.++
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999999885 47899999999763 445678888875 3333333211 12234555666653
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=234.91 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=130.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC----------------CcCce----EEE--EEEEcCcc----
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----------------KTGGY----ITG--NITISGYP---- 619 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~----------------~~~~~----~~G--~i~~~g~~---- 619 (1140)
++.++++++ |++++|+||||||||||+++|++. ..++. ..+ ++.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777876 789999999999999999999832 11110 112 45555532
Q ss_pred c--CcccccceEEEeccCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 K--KQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~--~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. .....++.+++++|+..+++ ..|..|...+............. ... .++.+.+++.+..+.. .+.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----ccccC
Confidence 1 11235667899999877776 36777766665544322110000 001 1233334444333333 35799
Q ss_pred HHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 696 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 696 gGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.+|++++|.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999974 6899999999999999999999999999865 78899899984 57899999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=246.86 Aligned_cols=199 Identities=25% Similarity=0.352 Sum_probs=157.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++..-| .+.+.|++.|+.++|||-+.|.||||||||||+|+|+|.-+.+ +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 46799999998654 2346899999999999999999999999999999999997765 5666432
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC-CCCCcCCHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL-PGVSGLSTE 697 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~-~~~~~LSgG 697 (1140)
. ...+-|+||.|.+.. -|.||-+.|.... +..+++ .+.+++..+||.+..+...+. +-.+.||+|
T Consensus 454 -~-----~~~~lflpQ~PY~p~-GtLre~l~YP~~~---~~~~d~----~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 -A-----DSALLFLPQRPYLPQ-GTLREALCYPNAA---PDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred -C-----CCceEEecCCCCCCC-ccHHHHHhCCCCC---CCCChH----HHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 1 134689999988754 5999999874321 123333 367899999999887776442 223569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||||+++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +....++.+-+.++
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999998643 4899999999975 45666776666543
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=226.46 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=124.6
Q ss_pred ceEEEeCceEEEEeCCCCCChHHHHHHHh----cCCcCceEEEEEEEcCcccCcccccceEEEeccCC-----CCCCCCC
Q 001146 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLA----GRKTGGYITGNITISGYPKKQETFARISGYCEQND-----IHSPFVT 643 (1140)
Q Consensus 573 vs~~i~~G~~~al~G~sGaGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~lT 643 (1140)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 44567777 99999999999999999995 765432 344431222222233456788999987 3334458
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH------HHHHHHHhhCCcEeEE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR------LTIAVELVANPSIIFM 717 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR------v~ia~al~~~p~illl 717 (1140)
+.|++.+. ..++ +++.+ +.. ++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~~~----~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQGE----SNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chHH----HHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88887652 1111 22222 222 35799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 718 DEPTSGLDARAAA-IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 718 DEPtsgLD~~~~~-~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||++||+.++. .+.+.|++++++ |.|+|+++|++. ..+.+|+++.|.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 9999999999999 999999998766 899999999964 4578999999987764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-25 Score=236.80 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=132.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++++++++ ++++|+||||||||||+++|.- ++|.+... ..++.+++++|+...+|.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCce
Confidence 34568899987 8999999999999999999961 12222111 112457888888888888888
Q ss_pred HHHHHHHHHccCC-----CCCCHHHHHH--HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh----CCc
Q 001146 645 YESLLFSAWLRLS-----PEVDSETRKM--FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----NPS 713 (1140)
Q Consensus 645 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~----~p~ 713 (1140)
+|.+.+....... .....+.... ..+++++.+++.+..++.+ +.||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877654432100 0011110000 0245667777776666653 4699999999999999974 579
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+++|||||+|||+.+...+.+.|++++ ++.|+|+++|++ ++.+.||++++|...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999985 678999999999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-24 Score=227.54 Aligned_cols=180 Identities=17% Similarity=0.089 Sum_probs=121.5
Q ss_pred eCceEEEe-CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC--cccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 571 NGVSGAFR-PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 571 ~~vs~~i~-~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
++++|... +|++++|+||||||||||+++|++...+ +..+....+. ........+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 44566543 5899999999999999999999863321 1222222211 11111223456888888763211 11111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh----------CCcEeEE
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----------NPSIIFM 717 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~----------~p~illl 717 (1140)
. ..+.++..+.+ .++..++.+..+.. .+.||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222211111 12333344444433 35799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||+|||+.+...+.+.|++++++|+|+|++||+++ .+...+|+++++++||
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999998777999999999986 5678889999999765
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-24 Score=229.89 Aligned_cols=208 Identities=21% Similarity=0.247 Sum_probs=162.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.+++++||.|.|+... -=+..||++|+.||++-|+|.|||||||++++|.|...| .+|+|.+||+|
T Consensus 321 ~~lelrnvrfay~~~~------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCcc
Confidence 4799999999996211 127889999999999999999999999999999999874 48999999999
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
++. +++|+..+-|+.|-.+|+.+- .++.... .+.++..++.+.+.+.-.-..|+-..-.||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCC---hHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 865 356776666777666665321 1111111 2336777888877765444333322345999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .+.++|+||+.+|||-. -+..+||++.+.+ |+++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e 528 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 528 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence 99999999999999999999999999999999998887664 45677999999999954 5889999999986 78887
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.-+.
T Consensus 529 ~tge 532 (546)
T COG4615 529 LTGE 532 (546)
T ss_pred cccc
Confidence 6543
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=234.04 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=131.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc-cc-Cc----ccccceEEEeccCC---------CCCCCCCH
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY-PK-KQ----ETFARISGYCEQND---------IHSPFVTI 644 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~~----~~~~~~~~~v~q~~---------~~~~~lTv 644 (1140)
..+++|+||||||||||+++|++...+. ..|++...|. +. .. ...+..+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 3499999999999999999999865421 2356666665 21 10 11234688899874 34567899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc---------------cccCCCCCcCCHHHHHHHHHHHHHh
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS---------------LVGLPGVSGLSTEQRKRLTIAVELV 709 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------------~~g~~~~~~LSgGqrqRv~ia~al~ 709 (1140)
.+++......+...+ .++...+.+.++++.+++..-... ..-...+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 988865432111000 111223567888999998511000 0001124679999999999999998
Q ss_pred ----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 710 ----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 710 ----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+|+++++||||+|||+.+...+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 489999999994 6788899998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-24 Score=232.13 Aligned_cols=95 Identities=33% Similarity=0.456 Sum_probs=89.0
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||..+.+ |||||||||||||+|+++|+||+||||||+||+.+|..++.+|++.+ .++||+||+ ||++|+-.||.
T Consensus 392 ~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlvia---hrlsti~~ade 466 (497)
T COG5265 392 GVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIA---HRLSTIIDADE 466 (497)
T ss_pred ccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEe---ehhhhccCCce
Confidence 36765555 99999999999999999999999999999999999999999999855 689999999 99999999999
Q ss_pred eEEecCCeEEEecCcchHHH
Q 001146 81 IILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~ 100 (1140)
|+||++|+++|-|+|+||++
T Consensus 467 iivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 467 IIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999996
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=215.79 Aligned_cols=203 Identities=21% Similarity=0.244 Sum_probs=151.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..+++.+|+|.|+-. .-+++.+++..++.-+-.+++|+||+||||+++++.|... +..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 4568999999988521 1157899999999999999999999999999999998655 2356555433
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
|.+++|-.|...-+-.+.|.+ +.+....+ ++...++ ++.-+..+||+.-.-. ..+.+|||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~----~si~~LSGGQ 487 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTEEE----IRRHLGSFGLSGELAL----QSIASLSGGQ 487 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCHHH----HHHHHHhcCCCchhhh----ccccccCCcc
Confidence 456888888755444444433 33333333 2223333 4667888998743211 1246799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|-||++|.....+|.+|+|||||+.||-.+-..+.++|++. +-.||+++|+.+ .+-..|+.+.+..+ |++. +.|
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg 562 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEG 562 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeec
Confidence 99999999999999999999999999999999999999876 358999999975 57788999999986 5554 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=225.79 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC---cEeEE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 717 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p---~illl 717 (1140)
.|||.|...|.... +. -.+.-+.+..+||.-. ..|.+ ...|||||.|||-+|.+|.++. .+.+|
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi---~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYI---KLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceE---ecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36788877775421 11 1123455666777532 23333 3469999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
||||+||-....+.+++.|.++.++|.|||++.|.+ ++.+.+|.|+=|- +||+++..|+|++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 999999999999999999999999999999999986 5789999999883 5789999999853
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=251.39 Aligned_cols=125 Identities=23% Similarity=0.309 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFM 717 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illl 717 (1140)
.|||.|.+.|... ..+-.+.-+.++.+||.... .|.+ ...|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq~-~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQN-LSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCCc-CCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3577777666421 01122234677778886432 2332 356999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
||||+||++.....+++.|+++.+.|.|||++.|++ ++.+.+|.++=|. +||++++.|+++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 999999999999999999999999999999999996 5788899999995 568999999985
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-23 Score=227.13 Aligned_cols=95 Identities=29% Similarity=0.440 Sum_probs=90.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+.+.| |||||||||||||++++.|.|++|||||||||..+|..++.+|.+++ .+|||||++ ||+||+-+||.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvA---HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVA---HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEe---eeehheecccE
Confidence 47876666 99999999999999999999999999999999999999999999987 489999999 99999999999
Q ss_pred eEEecCCeEEEecCcchHHH
Q 001146 81 IILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~ 100 (1140)
|+|+++|+++|-|+|+|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=245.00 Aligned_cols=94 Identities=32% Similarity=0.434 Sum_probs=87.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| ++..+||||||||++|||||+++|+||+||||||+||..+|..|.+.|++.. .++|+|+|| ||+++++.+|+|
T Consensus 603 v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~Ia---HRl~ti~~adrI 677 (709)
T COG2274 603 VG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIA---HRLSTIRSADRI 677 (709)
T ss_pred cc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEE---ccchHhhhccEE
Confidence 45 4567799999999999999999999999999999999999999999999855 467888899 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++||++++|||+|+++
T Consensus 678 iVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 678 IVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEccCCceeccCCHHHHHH
Confidence 9999999999999999996
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=192.03 Aligned_cols=226 Identities=16% Similarity=0.207 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-e-EEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y-ITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~-~~G~i~~~g~~ 619 (1140)
+..+|++...++. .+..+++++||+++..||+-+++|.||||||-..|+|+|..+.. . ......+++.+
T Consensus 4 LDIrnL~IE~~Ts---------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 4 LDIRNLTIEFKTS---------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred ccccceEEEEecC---------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 3456777666543 35567899999999999999999999999999999999954321 1 12334455544
Q ss_pred c---Cccccc----ceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCC-CC--HHHHHHHHHHHHHHcCCccccccccc
Q 001146 620 K---KQETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE-VD--SETRKMFIDEVMELVELNPLRQSLVG 687 (1140)
Q Consensus 620 ~---~~~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~g 687 (1140)
. ..+..| +.+++++|++. +.|.-+|...+.-..-.....+ .. -.-|+++.-+++..+|+.+..|-...
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~S 154 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS 154 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHh
Confidence 2 222223 45678999874 3444444433321110000000 00 01244556789999999987776655
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
.| .+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||+.++||.. .+-+.+|++-+
T Consensus 155 YP--~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~V 231 (330)
T COG4170 155 YP--YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINV 231 (330)
T ss_pred Cc--chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEE
Confidence 54 57999999999999999999999999999999999999999999998864 5899999999987 58899999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|.- |+.+..+|.+
T Consensus 232 lYC-GQ~~ESa~~e 244 (330)
T COG4170 232 LYC-GQTVESAPSE 244 (330)
T ss_pred EEe-cccccccchh
Confidence 996 7888888864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-22 Score=208.13 Aligned_cols=95 Identities=26% Similarity=0.335 Sum_probs=83.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+|||||||||+|||||+.+|+||++||||||||+.+...|.+.|+++-++.|.||++..|+.- -+=+.+|++.|
T Consensus 136 ~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVav 214 (339)
T COG1135 136 DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAV 214 (339)
T ss_pred ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheE
Confidence 34667899999999999999999999999999999999999999999999988888888887555432 45556799999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++|+|+..++-
T Consensus 215 m~~G~lvE~G~v~~vF 230 (339)
T COG1135 215 LDQGRLVEEGTVSEVF 230 (339)
T ss_pred eeCCEEEEeccHHHhh
Confidence 9999999999998875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=196.02 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+|||||||||||||||.-+|+|+++||||||||++...+|.+.++++|+ .|.|.+|..|.- .=.-+-+|+|+.
T Consensus 131 ~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviF 208 (240)
T COG1126 131 DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIF 208 (240)
T ss_pred hhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEE
Confidence 456789999999999999999999999999999999999999999999999986 556666655533 345567899999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|++++.-
T Consensus 209 md~G~iie~g~p~~~f 224 (240)
T COG1126 209 MDQGKIIEEGPPEEFF 224 (240)
T ss_pred eeCCEEEEecCHHHHh
Confidence 9999999999888765
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-22 Score=222.58 Aligned_cols=94 Identities=28% Similarity=0.405 Sum_probs=83.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ .++-||||||||||||||+++||+|+++|||||+||+.+|..+++.+++.. .++|.|.|+ |++++.+.||+|
T Consensus 481 VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~Iv---H~l~ll~~~DkI 555 (591)
T KOG0057|consen 481 VGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIV---HRLDLLKDFDKI 555 (591)
T ss_pred Hhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEE---ecchhHhcCCEE
Confidence 564 445599999999999999999999999999999999999999999999833 344555566 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++.+.|+|+|+++
T Consensus 556 ~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 556 IVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEECCeeEEeccHHHHhh
Confidence 9999999999999999997
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=215.70 Aligned_cols=212 Identities=18% Similarity=0.223 Sum_probs=137.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...+.++|+++++. ++.+++|+++++.+|+-++|+|||||||||+|++|+|+..|-+..=.++.-..
T Consensus 73 s~dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 44688889888764 45689999999999999999999999999999999997665433333333332
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCC----------------CCCCHHHHHHHHHHHHHHcCCc-c
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLS----------------PEVDSETRKMFIDEVMELVELN-P 680 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~----------------~~~~~~~~~~~~~~~l~~~~l~-~ 680 (1140)
+....... .+-++.+ +.-..+..+.+-. .+... ...+.+.-+.++.+++..+|-. +
T Consensus 140 e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 140 EIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred cCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 22211100 0000000 0001111111100 00000 0011111222334445444432 3
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCC-EEEEEecCCCHHHHH
Q 001146 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFE 759 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~-tvi~~~H~~~~~~~~ 759 (1140)
.++.. +.++|||+|+|+++||+|..+|++|||||||++||.++...+-+.|.+. .+ ++|+++|.-+ .+-.
T Consensus 214 m~~k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~ 284 (614)
T KOG0927|consen 214 MQDKK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNG 284 (614)
T ss_pred HHHHH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhh
Confidence 34433 4679999999999999999999999999999999999999988888654 33 8999999754 5678
Q ss_pred hhceEEEEecCCE-EEEECCC
Q 001146 760 AFDELFLMKRGGQ-EIYVGPL 779 (1140)
Q Consensus 760 ~~d~v~~l~~gg~-~~~~g~~ 779 (1140)
.|.+|+-|.+ ++ +.|.|+-
T Consensus 285 vCT~Ii~l~~-kkl~~y~Gny 304 (614)
T KOG0927|consen 285 VCTNIIHLDN-KKLIYYEGNY 304 (614)
T ss_pred Hhhhhheecc-cceeeecCCH
Confidence 9999999986 56 5566664
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=211.24 Aligned_cols=207 Identities=23% Similarity=0.282 Sum_probs=156.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-+++++|+.+-|. .+..+++|+|++|+.|+.+.|+||||||||+|+++|+|.-+. .+|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--CCCeEEecccC
Confidence 56999999987653 145688999999999999999999999999999999998652 35776543322
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC------CCCc
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------GVSG 693 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~------~~~~ 693 (1140)
. .+.+-|+||.|.. +.-|.||.+.|...--.+. .+....+.+.+.++.++|.|..+..-|.. ....
T Consensus 499 ~-----~~~lfflPQrPYm-t~GTLRdQvIYP~~~~~~~--~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYM-TLGTLRDQVIYPLKAEDMD--SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCc-cccchhheeeccCcccccc--ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 1447899998865 4459999998863211110 01112234677888888887766554432 1235
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-+.|+.+ +.+.=|.++-|+-+|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDGRGS 644 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecCCCc
Confidence 999999999999999999999999999999999999998888765 4999999999976 4555588888874443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=198.63 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=116.4
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
++++++++.+| +.+|+||||||||||+.+|.....+. ...|. .+.. -+........+.+.+|.....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-~~~~-~i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-SLKD-LIKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-cHHH-HhhCCCCeEEEEEEEEcCCccC------
Confidence 56788888887 88999999999999999997422110 00111 0000 0011111344667777654443
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTS 722 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al----~~~p~illlDEPts 722 (1140)
| .... ..++.++++++. .+..+.. ++.||+|||||++||++| +.+|++++|||||+
T Consensus 83 ~-----------~~~~-~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 N-----------PLCV-LSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred C-----------cCCH-HHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 0 1111 112345666665 4444444 357999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC---CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 723 GLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~---g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||..+...+.+.|+++.++ +.|||+++|++. ++.+ +|+|-+|..
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~ 190 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRM 190 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEe
Confidence 99999999999999987643 368999999987 4555 599999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-21 Score=238.10 Aligned_cols=94 Identities=31% Similarity=0.452 Sum_probs=86.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +.+..|||||||||+||||+++||+||+||||||+||+.+|..|+++++++. +++||++|+ ||+++++.+|+|
T Consensus 459 vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIa---HRlsti~~aD~I 533 (567)
T COG1132 459 VG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIA---HRLSTIKNADRI 533 (567)
T ss_pred ec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEe---ccHhHHHhCCEE
Confidence 66 4556799999999999999999999999999999999999999999998755 556788888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++|+|+|+||++
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999996
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=205.77 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=115.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-------c-C--cccccceEEEeccCCCC-CCCCCHHHHHHH
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------K-K--QETFARISGYCEQNDIH-SPFVTIYESLLF 650 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~-------~-~--~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~ 650 (1140)
+++|+|||||||||||++|++...+. .|++..++.. . . .....-.+.|..|++.. .-..++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 99999999999999999999854321 2333332211 0 0 00111123343343211 00111111100
Q ss_pred HHHccCCC-CCCHHHHHHHHHHHHHHcCCccccccc---------ccC--------CCCCcCCHHHHHHHHHHHHHhhC-
Q 001146 651 SAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSL---------VGL--------PGVSGLSTEQRKRLTIAVELVAN- 711 (1140)
Q Consensus 651 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~g~--------~~~~~LSgGqrqRv~ia~al~~~- 711 (1140)
..+... ..+ ++.++++++.+|+....... +.. ..+..||||||||++||++++.+
T Consensus 101 --~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 --SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred --EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 001111 111 22356788888885332111 000 11357999999999999999875
Q ss_pred ---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 712 ---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 712 ---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|++++|||||+|||+.++..+.+.|++++++|.++|+++|++ ++.+.+|++++|.+.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 899999999999999999999999999887799999999995 5678999999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=200.47 Aligned_cols=194 Identities=20% Similarity=0.309 Sum_probs=147.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.|..+-+.||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|...| ..|+.+-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK-- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK-- 646 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--
Confidence 455678889998886 456789999999999999999999999999999999998874 3565432
Q ss_pred cccCcccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 618 YPKKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 618 ~~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
+.|-++|+..|.. .+-..-|..|.|.-.. ..+.++ ....+-.+||...++|+- ++.||
T Consensus 647 ------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 647 ------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred ------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 2344678887753 2333346666554221 122221 346778899998888863 57899
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||-||++|.--++.|+||+|||||++||.++...+.+++++. .-.||+++||-+. +.+.-..+.++.+.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999999999999999999999999999999888765 4589999999763 445555667776554
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=231.88 Aligned_cols=94 Identities=27% Similarity=0.440 Sum_probs=84.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. ...|||||||||+|||||+++|+||+||||||+||+.+|..+++++++.. +++|+|+|| ||.++++.||+|
T Consensus 479 vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiIt---Hrl~~i~~aD~I 553 (588)
T PRK11174 479 IGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVT---HQLEDLAQWDQI 553 (588)
T ss_pred cccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cChHHHHhCCEE
Confidence 5644 46699999999999999999999999999999999999999999998754 456677777 778999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 554 ivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 554 WVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEeCCeEeecCCHHHHHh
Confidence 9999999999999999985
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=177.23 Aligned_cols=206 Identities=19% Similarity=0.323 Sum_probs=151.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++..++.|+|+.. .+++-|+|++++.|.-+.++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~~------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecccC------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 468999999999742 26899999999999999999999999999999999965422 3788888875
Q ss_pred c-Cc-------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 001146 620 K-KQ-------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 620 ~-~~-------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 685 (1140)
. .. ..+.+..+.-. +-.+....++.+ +.|+.. ..+. +|+ +++++.++++--..
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp-~Rr---e~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP-ERR---EKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh-hHh---hhhhhheeccceEE--
Confidence 3 11 01222222222 122223455544 444421 2222 332 56677776642221
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
.+.+|-||||||.|++.|++.=++|+|||-|--||..++..+++.+++-.+ +|.|||..||-.+ -+.....++
T Consensus 145 -----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred -----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 245999999999999999999999999999999999999999999998775 4899999999776 467778999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
+.++ +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 9998 5888875543
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-21 Score=205.59 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001146 867 IQFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 945 (1140)
Q Consensus 867 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 945 (1140)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.+++++ .++. ++.|.+++.+.+.++....+......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNS---QDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccc---cccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 899999999999999999998732 2233 56777777777666555555545567
Q ss_pred hhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001146 946 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1025 (1140)
Q Consensus 946 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1140)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++++++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999877 77777777888888889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhh
Q 001146 1026 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1081 (1140)
Q Consensus 1026 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef 1081 (1140)
+++...+..+.+++..++++++|.++|.+++|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-20 Score=211.83 Aligned_cols=94 Identities=32% Similarity=0.458 Sum_probs=87.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +..++|||||+|||++||||+++++++++||||++||.+||..|++.+.++++ ++|++++| ||+...+.+|+|
T Consensus 450 ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~it---Hrl~~~~~~D~I 524 (559)
T COG4988 450 IG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVIT---HRLEDAADADRI 524 (559)
T ss_pred hc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEE---cChHHHhcCCEE
Confidence 44 46688999999999999999999999999999999999999999999999774 67888888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++++|+|+++.+
T Consensus 525 ~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 525 VVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCceeccCCHHHHhh
Confidence 9999999999999999974
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-20 Score=204.87 Aligned_cols=199 Identities=24% Similarity=0.280 Sum_probs=134.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..|..+|.+..| +.+.+|++-++++..|.-++|+||||+||||||++|+. |.| .+.+
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 456777777666 34678999999999999999999999999999999985 111 1222
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
..++ .+ --+++........-|.++.+...- +.+... ++++..++++..+|..+-.... ..+.||||-
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGW 203 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGW 203 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcch
Confidence 2111 11 012221111112223333332210 001111 3334445588888887543322 246799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|-|+++||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++||-+ .+-..|..|+-+++ -++- |.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~~-~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLEN-LKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHhh-hhhhhhcC
Confidence 99999999999999999999999999999999999998765 489999999954 56678888888874 3443 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
.
T Consensus 279 N 279 (582)
T KOG0062|consen 279 N 279 (582)
T ss_pred c
Confidence 3
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=187.26 Aligned_cols=94 Identities=28% Similarity=0.375 Sum_probs=83.1
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+..+|||||||||||||||+.+|++|+||||||+||+....+|++.|.++.+.++-|.++ |.|-..-+..++|+|+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~-IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLF-ISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEE-EeCcHHHHHHHhhheeeee
Confidence 456799999999999999999999999999999999999999999999977665555554 4556667788899999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++|.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999985
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-19 Score=202.09 Aligned_cols=99 Identities=29% Similarity=0.439 Sum_probs=90.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++++|||||||++||+||+.+|+||||||||||||+.++..+.+.++++++.+++||+++.|++. ++...||+|++
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~i 209 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVII 209 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEE
Confidence 34578999999999999999999999999999999999999999999999998766689999977555 88888999999
Q ss_pred ecCCeEEEecCcchHHHHHH
Q 001146 84 LSDGQIVYQGPRELVLEFFA 103 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~~F~ 103 (1140)
|++|+++++|+.+++...+.
T Consensus 210 l~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 210 LNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred EeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999887654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-19 Score=182.49 Aligned_cols=93 Identities=26% Similarity=0.396 Sum_probs=87.1
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||+|||+|||||+.+|+|++-||||++||+.++.+||+.|+++....|.|+|+.+||=- -.-+.||+|+=|.+
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~ 223 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKA 223 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999654 67789999999999
Q ss_pred CeEEEecCcchHHH
Q 001146 87 GQIVYQGPRELVLE 100 (1140)
Q Consensus 87 G~vvy~G~~~el~~ 100 (1140)
|+++|.||.+|+-+
T Consensus 224 G~ivfDg~~~el~~ 237 (258)
T COG3638 224 GRIVFDGPASELTD 237 (258)
T ss_pred CcEEEeCChhhhhH
Confidence 99999999999765
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-19 Score=224.73 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=83.3
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|.++.+.+++. +.|+|+|| ||.++++.+|+|
T Consensus 582 ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiIt---Hr~~~i~~~D~I 654 (686)
T TIGR03797 582 ISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIA---HRLSTIRNADRI 654 (686)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEe---cChHHHHcCCEE
Confidence 454 35679999999999999999999999999999999999999999999864 35667777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 655 ivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 655 YVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=188.85 Aligned_cols=94 Identities=30% Similarity=0.406 Sum_probs=87.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
..+..||||||||+-|||||+.+|+||+||||||.||-....+|++.+++++++++.|||+++|-+. -..+.+|++++|
T Consensus 134 r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~l 212 (258)
T COG1120 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILL 212 (258)
T ss_pred CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999999888999999988555 788999999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++.+|+++|.+
T Consensus 213 k~G~i~a~G~p~evl 227 (258)
T COG1120 213 KDGKIVAQGTPEEVL 227 (258)
T ss_pred ECCeEEeecCcchhc
Confidence 999999999999887
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-19 Score=223.65 Aligned_cols=94 Identities=27% Similarity=0.510 Sum_probs=85.0
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ....||||||||++|||||+++|+||+||||||+||+.+|..+++.+++.. .++|+++|| ||+++++.+|+|
T Consensus 595 i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiIt---Hrl~~~~~~D~i 669 (694)
T TIGR03375 595 IGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVT---HRTSLLDLVDRI 669 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCHHHHHhCCEE
Confidence 454 456799999999999999999999999999999999999999999998754 456777777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++|+|+|+|+++
T Consensus 670 ivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-19 Score=224.54 Aligned_cols=92 Identities=26% Similarity=0.390 Sum_probs=83.7
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|.++.+.+++ .+.|+|++| ||.++++.+|+|
T Consensus 609 i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~Iiit---Hrl~~i~~~D~I 681 (710)
T TIGR03796 609 LAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVA---HRLSTIRDCDEI 681 (710)
T ss_pred ecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEe---cCHHHHHhCCEE
Confidence 453 4577999999999999999999999999999999999999999999975 356677777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 682 ivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 682 IVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEeCCEEEEecCHHHHHH
Confidence 9999999999999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-19 Score=199.09 Aligned_cols=94 Identities=26% Similarity=0.426 Sum_probs=83.4
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +.+++||||||||++|||+|.+|.++++|||||.|||..+|.+|++.+.+.+. ++|.+++| |++.-.+.||+|
T Consensus 468 lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vT---HrL~~le~~drI 542 (573)
T COG4987 468 LG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVT---HRLRGLERMDRI 542 (573)
T ss_pred hc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEe---cccccHhhcCEE
Confidence 44 45677999999999999999999999999999999999999999999987553 44455566 777888999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++|+|+|+++++
T Consensus 543 ivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEECCeeeecCCHHhhhc
Confidence 9999999999999999985
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=191.69 Aligned_cols=171 Identities=27% Similarity=0.329 Sum_probs=122.7
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---ccc---------c------eEEEeccCCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFA---------R------ISGYCEQNDI 637 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~---------~------~~~~v~q~~~ 637 (1140)
..+||++++|+||||-||||-+|+|+|...|. -|+ .++.|-.+. .+| + .+..=+|---
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 35799999999999999999999999976642 121 112111000 000 0 0111122111
Q ss_pred CCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 638 HSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 638 ~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+.| .-||.|-|.-. +.+...+++++.++|.+..|+.+ +.|||||-||++||.+++++.++
T Consensus 172 ~iPk~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 172 LIPKVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCE
Confidence 111 12566655321 11124688999999999988764 57999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+++|||||-||...+....+.++++++.+++||++.||+. -+--+.|-|.++.
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y 287 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY 287 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence 9999999999999999999999999988999999999975 2334567777776
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-19 Score=216.25 Aligned_cols=94 Identities=30% Similarity=0.480 Sum_probs=83.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.++..+.+.+++.. .++|++++| |+.++++.+|+|
T Consensus 469 vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiit---Hr~~~~~~~d~i 543 (574)
T PRK11160 469 LGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMIT---HRLTGLEQFDRI 543 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cChhHHHhCCEE
Confidence 454 456799999999999999999999999999999999999999999998854 345556666 777889999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999985
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-19 Score=222.86 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=83.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|..+++.|++. .++|+|+|| ||.++++.+|+|
T Consensus 605 i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~Iiit---Hr~~~~~~~D~i 678 (708)
T TIGR01193 605 LSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVA---HRLSVAKQSDKI 678 (708)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEe---cchHHHHcCCEE
Confidence 443 45679999999999999999999999999999999999999999999873 345666777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=174.52 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 694 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|+|+|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998777899999999964 5678999999986
Q ss_pred CC
Q 001146 770 GG 771 (1140)
Q Consensus 770 gg 771 (1140)
.+
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 33
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=179.35 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-C-CEEEEEecCCCHHHHHhhc--
Q 001146 691 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G-RTVVCTIHQPSIDIFEAFD-- 762 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g-~tvi~~~H~~~~~~~~~~d-- 762 (1140)
+..||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||++. +..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 357999999999877554 5899999999999999999999999999998765 5 58999999875 4556665
Q ss_pred eEEEEecCCE
Q 001146 763 ELFLMKRGGQ 772 (1140)
Q Consensus 763 ~v~~l~~gg~ 772 (1140)
++++|.+ |+
T Consensus 203 ~v~~l~~-g~ 211 (213)
T cd03277 203 TVLCVYN-GP 211 (213)
T ss_pred EEEEEec-Cc
Confidence 7888875 44
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-19 Score=221.34 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=80.1
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|..+.+ .. ...++|.++|| ||.++++.+|+|
T Consensus 611 ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiIt---Hrl~~i~~aD~I 683 (711)
T TIGR00958 611 VGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIA---HRLSTVERADQI 683 (711)
T ss_pred ccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEe---ccHHHHHhCCEE
Confidence 453 456799999999999999999999999999999999999988888 32 22345666677 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 684 ivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 684 LVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEECCEEEEeeCHHHHHh
Confidence 9999999999999999985
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=183.30 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=107.7
Q ss_pred eeCceEEEeCce-EEEEeCCCCCChHHHHHHHh--------cCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC
Q 001146 570 LNGVSGAFRPGV-LTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 570 L~~vs~~i~~G~-~~al~G~sGaGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 640 (1140)
..++|+++.+|+ +++|+|||||||||||++|+ |...+. .. ...++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~--------------~~~~~~~~~~~~--- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AE--------------GSSLPVFENIFA--- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cc--------------cccCcCccEEEE---
Confidence 568999999995 89999999999999999997 321110 00 001223333210
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
.++..+..+. +...+|+||||++.|+++ +.+|+++++|||
T Consensus 78 ----------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp 117 (200)
T cd03280 78 ----------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDEL 117 (200)
T ss_pred ----------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCC
Confidence 0111111111 124599999999999988 489999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 721 TSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 721 tsgLD~~~~~~v~-~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
++|||+.....+. ..++++.+.|.|+|++||+. ++.+.+|+++.|.+ |++.++++
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~~ 173 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDPE 173 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEecC
Confidence 9999999999886 46777777799999999973 67899999999986 79988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=216.21 Aligned_cols=94 Identities=27% Similarity=0.426 Sum_probs=84.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. .+.|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. .++|.|++| |+.++.+.||+|
T Consensus 474 ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~Vt---Hr~~~~~~~D~I 548 (582)
T PRK11176 474 IGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA---HRLSTIEKADEI 548 (582)
T ss_pred eCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEE
Confidence 5543 46699999999999999999999999999999999999999999998753 455667777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 549 i~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999999985
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=196.63 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+++|+||+|||||||||+.+...+.+.|+++.++.+.|||++.|+ ...+-+.+|+|++|
T Consensus 136 ~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999876557788776664 34666889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=214.76 Aligned_cols=94 Identities=28% Similarity=0.337 Sum_probs=84.2
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ....|||||||||+|||||+++|+||+||||||+||..++..+.+.+++.. .++|+|++| ||.++.+.+|+|
T Consensus 470 i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivt---Hr~~~l~~~D~i 544 (592)
T PRK10790 470 LGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIA---HRLSTIVEADTI 544 (592)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEE
Confidence 443 446699999999999999999999999999999999999999999998854 356677777 778999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 545 i~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999999984
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-18 Score=191.50 Aligned_cols=172 Identities=21% Similarity=0.349 Sum_probs=128.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
....++..++|.|+||--+.|.||||||||+|+++|.|.-+ ...|...+ | .+..+-|+||.|..- .-|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~g~L~~---P-----~~~~mFYIPQRPYms-~gtl 561 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP--VYNGLLSI---P-----RPNNIFYIPQRPYMS-GGTL 561 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc--ccCCeeec---C-----CCcceEeccCCCccC-cCcc
Confidence 34568899999999999999999999999999999999764 11232221 1 124489999998765 5688
Q ss_pred HHHHHHHHH---ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC----CcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 645 YESLLFSAW---LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV----SGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 645 ~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~----~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
||.+.|.-. ++ ..+..+ +..+.+++.+.|++...+-.|-.-+ .-||||||||+.+||.+-++|+.-+|
T Consensus 562 RDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 562 RDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL 636 (728)
T ss_pred cceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence 887765311 00 012222 2356677777777666554443211 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCH
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 755 (1140)
||.||+..+..+..+.+..++ .|.+.|-++|+|+.
T Consensus 637 DEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred hhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 999999999988888877754 49999999999974
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-18 Score=184.01 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.....||||||||+|||.+|+.+|+||+|||||||||..+...+++.++++...++.|+|+..| .-..+...+|++++|
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl 212 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVL 212 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999987765666666544 444666669999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|++.++.+
T Consensus 213 ~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 213 DDGKILADGDPAEIFN 228 (235)
T ss_pred ECCEEeecCCHHHHhh
Confidence 9999999999877764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=167.06 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=87.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
....+||||||||+|+||.|+++-+||+||||-|+||+.-..+....+.+++.+++.|+++-.|||. +..+.+|+++++
T Consensus 125 RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl 203 (231)
T COG3840 125 RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFL 203 (231)
T ss_pred hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEE
Confidence 3457899999999999999999999999999999999999999999999999888889998878776 899999999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|||.++|+.++..
T Consensus 204 ~~Gri~~~g~~~~~~ 218 (231)
T COG3840 204 DNGRIAAQGSTQELL 218 (231)
T ss_pred eCCEEEeeccHHHHh
Confidence 999999999999876
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-18 Score=174.83 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=85.6
Q ss_pred CCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 3 G~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
++-+...||||.|||+|+||||..||.|||+||||||||+-++..+.+.++++-+.-+.|+++- .|.-.+++..+|+++
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEE
Confidence 3456788999999999999999999999999999999999999888888887766666666664 457779999999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|.+|+|+.+||.+|+.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999984
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-18 Score=184.15 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=84.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+||||+||||.||.||..+|++|+-||||||||.....+|++.|+++.++.++++++ |.|--.-+.+.+|+|+|
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil-ITHDl~vva~~aDri~V 226 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL-ITHDLGVVAEIADRVAV 226 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcceEEE
Confidence 34567899999999999999999999999999999999999999999999988766666655 44455568899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|..|++||.|+.+++..
T Consensus 227 MYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 227 MYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EECcEEEEeCCHHHHhc
Confidence 99999999999998864
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-18 Score=182.42 Aligned_cols=184 Identities=26% Similarity=0.307 Sum_probs=134.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc------CceEEEEEEEcCcccCcccccceEEEeccCC-C
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT------GGYITGNITISGYPKKQETFARISGYCEQND-I 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~------~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~ 637 (1140)
....+|+|+|++++||++++|+|+|||||||+|++|.|... +.+.+|.|.+--.. ..+.+|-+. .
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep 465 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEP 465 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccc
Confidence 45679999999999999999999999999999999999432 22446666542211 223444432 1
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
-+..-|+.|++.- ...+. ....+++..+|+.+..-.. ...++||.|||.|..||.++...|.+++.
T Consensus 466 ~f~~~tilehl~s-----~tGD~------~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 466 EFGEVTILEHLRS-----KTGDL------NAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccCchhHHHHHhh-----ccCch------hHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 2224466665531 11111 1235788888887643222 12467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
||--+.||..++..+.+-+.+++++ |.|.+++||+|+. +-.+ -|+++++.-|+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~ 586 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGK 586 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccc
Confidence 9999999999999999999999854 9999999999852 3333 48888887543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-18 Score=190.03 Aligned_cols=111 Identities=24% Similarity=0.357 Sum_probs=92.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.+ .++||+++.|.+ ..+.+.+|+|++|
T Consensus 140 ~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l 217 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLL 217 (288)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 44578999999999999999999999999999999999999999999988664 577888776644 4677899999999
Q ss_pred cCCeEEEecCcchHHH---HHHhCCCCCCCCCChhH
Q 001146 85 SDGQIVYQGPRELVLE---FFASMGFRCPKRKGVAD 117 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~---~F~~~G~~~p~~~n~ad 117 (1140)
++|+++++|+++++.. .+...|+.+|.....++
T Consensus 218 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 218 EKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred ECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 9999999999998753 34556777666544443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-18 Score=192.49 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+.+|+||++||||||||..+...+++.|+++.++.++|+++..|.. ..+.+.+|+|+||
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm 235 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVM 235 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEE
Confidence 356789999999999999999999999999999999999999999999987765577777655533 3555789999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++|.|+++++..
T Consensus 236 ~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 236 YAGRTMEYGNARDVFY 251 (330)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-18 Score=208.24 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.||||||||++|||||+++|+||+|||||||||+.++..+.+.+++... .++|+++.. |+.++.+.+|+|++|+
T Consensus 451 ~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~it--h~~~~~~~~d~i~~l~ 527 (544)
T TIGR01842 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVIT--HRPSLLGCVDKILVLQ 527 (544)
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEe--CCHHHHHhCCEEEEEE
Confidence 4577999999999999999999999999999999999999999999987543 445555544 4456889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 528 ~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 528 DGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEeeCCHHHHhh
Confidence 999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-18 Score=188.39 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=85.2
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++||+++.|.. ..+.+.+|+|++
T Consensus 139 ~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~ 217 (287)
T PRK13637 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIV 217 (287)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 4557889999999999999999999999999999999999999999999988765578888876654 367788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+.+++.+
T Consensus 218 l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 218 MNKGKCELQGTPREVFK 234 (287)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999988753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-18 Score=177.10 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=74.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.+..+|||||||||||||||+.+|+|++.||||.+||+.++..|++.+++++++.|+|+|+.. |...+-..+|+++.|
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT--Hd~~lA~~~dr~i~l 215 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT--HDPELAKYADRVIEL 215 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHhCCEEEEE
Confidence 346689999999999999999999999999999999999999999999998887776666543 666788899999999
Q ss_pred cCCeE
Q 001146 85 SDGQI 89 (1140)
Q Consensus 85 ~~G~v 89 (1140)
.+|++
T Consensus 216 ~dG~~ 220 (226)
T COG1136 216 KDGKI 220 (226)
T ss_pred eCCee
Confidence 99993
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-18 Score=190.39 Aligned_cols=105 Identities=22% Similarity=0.388 Sum_probs=85.8
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.. +++||+++.|.+ ..+.+.+|+|++|
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~adri~vl 249 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEVADEVIVM 249 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999988654 566776655533 2567899999999
Q ss_pred cCCeEEEecCcchHHH---HHHhCCCCCCC
Q 001146 85 SDGQIVYQGPRELVLE---FFASMGFRCPK 111 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~---~F~~~G~~~p~ 111 (1140)
++|++++.|+++++.. .++..|...|.
T Consensus 250 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred ECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999998753 23344444433
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-18 Score=191.52 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=83.3
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.+.|++++.| ....+.+.+|+|+||
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTH-dl~~~~~~adri~vm 227 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH-DLALVAEAAHKIIVM 227 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999987656777776555 333566889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
.+|++++.|+++++.+
T Consensus 228 ~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 228 YAGQVVETGKAHDIFR 243 (326)
T ss_pred ECCEEEEECCHHHHhh
Confidence 9999999999998864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-18 Score=193.77 Aligned_cols=96 Identities=24% Similarity=0.307 Sum_probs=86.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|+||+|||||||||..+...+.+.++++.+..++|+|++.|+ ..+..+++|+|++
T Consensus 129 ~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~l~D~i~v 207 (356)
T PRK11650 129 DRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD-QVEAMTLADRVVV 207 (356)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998776567888887664 4589999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 208 MNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EeCCEEEEECCHHHHHh
Confidence 99999999999998853
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-18 Score=213.62 Aligned_cols=94 Identities=30% Similarity=0.435 Sum_probs=83.2
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.||||||||++|||||+++|+||+|||||||||+.++..+.+.+++.. .+.|.+++| |+.++++.+|+|
T Consensus 587 i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~~~~~~~~d~i 661 (694)
T TIGR01846 587 VGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIA---HRLSTVRACDRI 661 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEe---CChHHHHhCCEE
Confidence 443 357799999999999999999999999999999999999999999998853 344555666 677899999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-18 Score=184.65 Aligned_cols=94 Identities=27% Similarity=0.296 Sum_probs=82.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++++++.++||+++.|.+. .+.+.+|+|++|
T Consensus 132 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 132 LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 4557899999999999999999999999999999999999999999999876545777777666443 677789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=171.74 Aligned_cols=96 Identities=26% Similarity=0.316 Sum_probs=88.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.++|||||+|||-|||||..+|+||++|||-||||+-+..++++.++++-++-++|||.-. |--.+.++++|+|+|
T Consensus 130 ~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~v 208 (309)
T COG1125 130 DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAV 208 (309)
T ss_pred hcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEE
Confidence 4467899999999999999999999999999999999999999999999988777788888754 488899999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++.+|++++++.
T Consensus 209 m~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 209 MDAGEIVQYDTPDEILA 225 (309)
T ss_pred ecCCeEEEeCCHHHHHh
Confidence 99999999999999985
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=187.91 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=84.3
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++...++|||++.|... .+.+.+|+|++|
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l 219 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM 219 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4568899999999999999999999999999999999999999999999877655788887766544 677899999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++++|+.+++.
T Consensus 220 ~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 220 HKGTVFLQGTPREIF 234 (290)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988874
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-18 Score=208.73 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=82.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.++..+.+.+++.. .++|.++|| |+.++.+.+|+|
T Consensus 465 i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiit---Hr~~~~~~~D~i 539 (588)
T PRK13657 465 VGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIA---HRLSTVRNADRI 539 (588)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEE---ecHHHHHhCCEE
Confidence 443 356699999999999999999999999999999999999999999998753 345566666 677899999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 540 i~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 540 LVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEEECCEEEEeCCHHHHHH
Confidence 9999999999999999984
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-18 Score=183.76 Aligned_cols=94 Identities=27% Similarity=0.405 Sum_probs=83.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.|+++++..++|||++.|++. .+.+.+|++++|
T Consensus 140 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 140 QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778888766544 677799999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=177.58 Aligned_cols=90 Identities=42% Similarity=0.760 Sum_probs=82.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++|+++++||+..++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 45667899999999999999999999999999999999999999999999876655778888888888899999999999
Q ss_pred ecCCeEEEec
Q 001146 84 LSDGQIVYQG 93 (1140)
Q Consensus 84 L~~G~vvy~G 93 (1140)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-18 Score=207.00 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=80.0
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....||||||||++|||||+++|+||+|||||||||..++..+.+.|++.. .++|.+++| |+.++++.+|+|++|+
T Consensus 468 ~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~is---H~~~~~~~~d~i~~l~ 543 (585)
T TIGR01192 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIA---HRLSTVRNADLVLFLD 543 (585)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEE---cChHHHHcCCEEEEEE
Confidence 456799999999999999999999999999999999999999999998753 344444455 5667889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 544 ~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 544 QGRLIEKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCHHHHHH
Confidence 999999999999985
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=175.58 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=98.9
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .++.|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45778887765 79999999999999999999988431 11233333221 25567778899999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCH
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 726 (1140)
++.++.. ....+. +++.++++.+++ .+|+++++|||++|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976431 112222 345666665542 68999999999999999
Q ss_pred HHHHHHH-HHHHHHhhCCCEEEEEecCCC
Q 001146 727 RAAAIVM-RTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 727 ~~~~~v~-~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
.....+. ..++++.+.|.|+|++||+++
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988765 467887777999999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=191.60 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++.++|+|+..|.+ .+..+++|+|++
T Consensus 129 ~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~v 207 (353)
T TIGR03265 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVV 207 (353)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEE
Confidence 4567789999999999999999999999999999999999999999999987766678888876755 488999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 208 MNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=205.99 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=80.1
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. .++|.+++| |+.++++.+|+|++|+
T Consensus 448 ~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~it---H~~~~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISA---HRLSALTEASEILVMQ 523 (569)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchhHHHcCCEEEEEe
Confidence 356799999999999999999999999999999999999999999998753 344444555 5567899999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 524 ~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 524 HGHIAQRGNHDQLAQ 538 (569)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999974
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-17 Score=207.47 Aligned_cols=94 Identities=27% Similarity=0.422 Sum_probs=82.9
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. .+.|||||||||+|||+++++|+||+||||||+||..++..+.+.|++.. .++|.|++| |+.+..+.+|+|
T Consensus 463 i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiit---H~~~~~~~~D~i 537 (571)
T TIGR02203 463 IGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA---HRLSTIEKADRI 537 (571)
T ss_pred ecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---hhhHHHHhCCEE
Confidence 4543 56799999999999999999999999999999999999999999998754 345556666 667889999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++++.|+|+++++
T Consensus 538 i~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999974
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=188.38 Aligned_cols=95 Identities=25% Similarity=0.402 Sum_probs=85.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..+++||||||||++||+||+.+|++|+|||||+|||+.+...+.+.++++. ..|+||+++.|+. .++-+.+|+|++
T Consensus 133 ~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~i 210 (306)
T PRK13537 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCV 210 (306)
T ss_pred cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEE
Confidence 34578899999999999999999999999999999999999999999999875 4588888887744 488899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+.+++..
T Consensus 211 l~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 211 IEEGRKIAEGAPHALIE 227 (306)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=190.89 Aligned_cols=95 Identities=22% Similarity=0.344 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+++|+||+|||||||||+.+..++.+.|+++.+..++|+++..|. ..++.+++|+|++
T Consensus 131 ~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~e~~~laD~i~v 209 (351)
T PRK11432 131 DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD-QSEAFAVSDTVIV 209 (351)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEE
Confidence 445688999999999999999999999999999999999999999999998776557788777664 4588999999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 210 m~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 210 MNKGKIMQIGSPQELY 225 (351)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=188.68 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.++|+++..| ....+-+.+|+|++
T Consensus 149 ~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH-dl~~~~~~adrv~v 227 (327)
T PRK11308 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH-DLSVVEHIADEVMV 227 (327)
T ss_pred cCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877655666665444 33345568999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++|.|+.+++..
T Consensus 228 m~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 228 MYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999998864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=165.46 Aligned_cols=94 Identities=24% Similarity=0.361 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+++|-|+||||+|||||+.+|+|++|||||||||-.+...+.+.+++ .+..|++||.+-| --.++-.++|+++++
T Consensus 129 rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q-~k~egr~viFSSH-~m~EvealCDrvivl 206 (245)
T COG4555 129 RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAVIFSSH-IMQEVEALCDRVIVL 206 (245)
T ss_pred HHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH-hhcCCcEEEEecc-cHHHHHHhhheEEEE
Confidence 34678999999999999999999999999999999999999999998887 4456888888855 566777799999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++|+.|+.+++.+
T Consensus 207 h~Gevv~~gs~~~l~~ 222 (245)
T COG4555 207 HKGEVVLEGSIEALDA 222 (245)
T ss_pred ecCcEEEcCCHHHHHH
Confidence 9999999999998864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=190.59 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++....++|||++.|. ..+..+.+|+|++|
T Consensus 125 ~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI~vl 203 (363)
T TIGR01186 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRIVIM 203 (363)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765557787776664 44688999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|++++++.
T Consensus 204 ~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 204 KAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCEEEeeCCHHHHHh
Confidence 9999999999998864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=190.87 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=84.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.|+++.+..++|||++.|++. .+.+.+|+|++|
T Consensus 136 ~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l 214 (343)
T PRK11153 136 RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVI 214 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999877655788888766544 677889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 215 ~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 215 DAGRLVEQGTVSEVFS 230 (343)
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999988853
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=190.88 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=85.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhc-CCEEEEEecCCChhHHhhccceE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~-~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++. ++|++++.| ...++.+++|+|+
T Consensus 132 ~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH-d~~ea~~l~dri~ 210 (362)
T TIGR03258 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH-DQDDALTLADKAG 210 (362)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CHHHHHHhCCEEE
Confidence 45678899999999999999999999999999999999999999999999877654 677777666 4457899999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|++|+++++|+++++..
T Consensus 211 vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 211 IMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=184.46 Aligned_cols=94 Identities=26% Similarity=0.270 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|+||+|||||+|||..+...+.+.++++++..++||+++.|++. .+.+.+|++++|
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l 234 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM 234 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 3457899999999999999999999999999999999999999999999877655778888766544 677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++++|+++++.
T Consensus 235 ~~G~i~~~g~~~~~~ 249 (269)
T cd03294 235 KDGRLVQVGTPEEIL 249 (269)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-17 Score=189.77 Aligned_cols=96 Identities=26% Similarity=0.316 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.+.|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++.++|+++..| ...++.+.+|+|++
T Consensus 131 ~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH-d~~ea~~~~Dri~v 209 (353)
T PRK10851 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH-DQEEAMEVADRVVV 209 (353)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877655777776655 55688999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 210 l~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 210 MSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998853
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=182.15 Aligned_cols=93 Identities=26% Similarity=0.354 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.++.++|++++.|++. .+.+.+|++++|
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l 219 (243)
T TIGR02315 141 QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGL 219 (243)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 4567899999999999999999999999999999999999999999999876655778877766544 567889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=181.64 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=83.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++|||++.|++ ..+.+.+|+|++|
T Consensus 132 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l 210 (239)
T cd03296 132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVM 210 (239)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 345789999999999999999999999999999999999999999999987765577888876754 4677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (239)
T cd03296 211 NKGRIEQVGTPDEVY 225 (239)
T ss_pred ECCeEEEecCHHHHh
Confidence 999999999988775
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-17 Score=180.06 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=83.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||+|+++|+||+|||||+|||..+...+.+.++++++..++||+++-|++. ++.+.+|++++
T Consensus 120 ~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 198 (230)
T TIGR02770 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV 198 (230)
T ss_pred hCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 34567799999999999999999999999999999999999999999999876545778887766544 67788999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 199 l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 199 MDDGRIVERGTVKEIF 214 (230)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998876
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=188.36 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=81.9
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
....+|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++.+.|+|++.| ....+.+.+|+|++|
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH-dl~~v~~~~dri~vm 232 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH-DLQMLSQWADKINVL 232 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999977655666666544 334555789999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
.+|++++.|+.+++..
T Consensus 233 ~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 233 YCGQTVETAPSKELVT 248 (330)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=190.33 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=85.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.+..++|+|+..| ...++..++|+|++
T Consensus 139 ~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTH-d~~ea~~laDri~v 217 (375)
T PRK09452 139 QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH-DQEEALTMSDRIVV 217 (375)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999887766778777656 45578999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 218 l~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 218 MRDGRIEQDGTPREIYE 234 (375)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999988753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=166.72 Aligned_cols=90 Identities=24% Similarity=0.338 Sum_probs=77.9
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
..+|||||+||++|||||.-+|+||+|||||||||+-|..+|=+.+.++. ..-||||-.| --...-+-.|....+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTH-nmqQAaRvSD~taFf~~ 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTH-NMQQAARVSDYTAFFYL 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeC-CHHHHHHHhHhhhhhcc
Confidence 45799999999999999999999999999999999999988888887754 3456666545 55578888999999999
Q ss_pred CeEEEecCcchHH
Q 001146 87 GQIVYQGPRELVL 99 (1140)
Q Consensus 87 G~vvy~G~~~el~ 99 (1140)
|++||+|+.+++-
T Consensus 224 G~LvE~g~T~~iF 236 (253)
T COG1117 224 GELVEFGPTDKIF 236 (253)
T ss_pred cEEEEEcCHHhhh
Confidence 9999999998874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=187.34 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.++|+++..| ....+.+.+|+|+|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH-dl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH-DLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45567899999999999999999999999999999999999999999999876655666666544 44466678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|.+|++++.|+.+++..
T Consensus 235 l~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 235 MYLGHAVELGTYDEVYH 251 (331)
T ss_pred EECCEEEEEcCHHHHHc
Confidence 99999999999988763
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-17 Score=185.96 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=85.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.++++.+ .|+||+++.|+ ..++.+.+|+|++
T Consensus 119 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~-~~~~~~~~d~v~~ 196 (302)
T TIGR01188 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHY-MEEADKLCDRIAI 196 (302)
T ss_pred CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 57888887664 4578889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 197 l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 197 IDHGRIIAEGTPEELKR 213 (302)
T ss_pred EECCEEEEECCHHHHHH
Confidence 99999999999999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=178.15 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 693 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.||||||||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999998864 789999999975 568999999998
Q ss_pred cCC
Q 001146 769 RGG 771 (1140)
Q Consensus 769 ~gg 771 (1140)
+++
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=177.84 Aligned_cols=89 Identities=36% Similarity=0.681 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.+++..+ .+.|++++.|++..++.+.+|++++
T Consensus 138 ~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~ 216 (226)
T cd03234 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216 (226)
T ss_pred cccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEE
Confidence 456788999999999999999999999999999999999999999999998654 5789999889888899999999999
Q ss_pred ecCCeEEEec
Q 001146 84 LSDGQIVYQG 93 (1140)
Q Consensus 84 L~~G~vvy~G 93 (1140)
|++|+++++|
T Consensus 217 l~~G~i~~~g 226 (226)
T cd03234 217 LSSGEIVYSG 226 (226)
T ss_pred EeCCEEEecC
Confidence 9999999987
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-17 Score=190.28 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=84.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.++.++|+|++.|++ .++.+.+|+|++|
T Consensus 129 ~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl 207 (369)
T PRK11000 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVL 207 (369)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 456789999999999999999999999999999999999999999999987765577877776644 4788999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 208 ~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 208 DAGRVAQVGKPLELYH 223 (369)
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999988753
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-17 Score=179.04 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=78.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
.++||||||||++|||+|+.+|++|+|||||+|||..+...+.+.|++.++ . +|||++.|++ ..+.+.+|+|++|++
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~~l~~ 215 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTAFLLN 215 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 478999999999999999999999999999999999999999999998764 4 6777766644 367788999999999
Q ss_pred CeEEEecCcchH
Q 001146 87 GQIVYQGPRELV 98 (1140)
Q Consensus 87 G~vvy~G~~~el 98 (1140)
|++++.|+++++
T Consensus 216 G~i~~~g~~~~~ 227 (227)
T cd03260 216 GRLVEFGPTEQI 227 (227)
T ss_pred CEEEEecCcccC
Confidence 999999998763
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-17 Score=187.15 Aligned_cols=96 Identities=26% Similarity=0.274 Sum_probs=85.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+++|+||+|||||||||..+...+.+.|+++.+..++|+|++.|.+ .++.+.+|+|++
T Consensus 95 ~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~v 173 (325)
T TIGR01187 95 DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAI 173 (325)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987766678888776644 478899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 174 l~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 174 MRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998863
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=180.35 Aligned_cols=95 Identities=27% Similarity=0.352 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+++|++|+|||||+|||..+...+.+.|+++++..++|||++.|++. .+.+.+|+|++
T Consensus 130 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~ 208 (242)
T cd03295 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAI 208 (242)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877655778888767554 67888999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 209 l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 209 MKNGEIVQVGTPDEIL 224 (242)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988775
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=179.80 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|++|+|||||+|||..+...+.+.+++.++ .++|+|++.|++. .+.+.+|+|++|
T Consensus 139 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l 216 (236)
T cd03219 139 RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVL 216 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765 5777777666443 666889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 217 ~~G~i~~~~~~~~~~ 231 (236)
T cd03219 217 DQGRVIAEGTPDEVR 231 (236)
T ss_pred eCCEEEeecCHHHhc
Confidence 999999999988775
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=176.74 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=77.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.+++++++.++||+++.|.+ ..+.+.+|+|++|
T Consensus 126 ~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l 204 (213)
T cd03259 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVM 204 (213)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEE
Confidence 345679999999999999999999999999999999999999999999987765577887776644 4677889999999
Q ss_pred cCCeEEEec
Q 001146 85 SDGQIVYQG 93 (1140)
Q Consensus 85 ~~G~vvy~G 93 (1140)
++|++++.|
T Consensus 205 ~~G~i~~~g 213 (213)
T cd03259 205 NEGRIVQVG 213 (213)
T ss_pred ECCEEEecC
Confidence 999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=189.43 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|+||+|||||||||..+...+.+.++++.++.+.|+|++.|. ..++..++|+|++
T Consensus 144 ~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~laDri~v 222 (377)
T PRK11607 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-QEEAMTMAGRIAI 222 (377)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEE
Confidence 456678999999999999999999999999999999999999999999988776667788777664 4478999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 223 l~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 223 MNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EeCCEEEEEcCHHHHHh
Confidence 99999999999998863
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-17 Score=182.87 Aligned_cols=96 Identities=25% Similarity=0.304 Sum_probs=83.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++||+++.|+.. .+-+.+|++++
T Consensus 136 ~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~ 214 (283)
T PRK13636 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFV 214 (283)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877654777777655333 45678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 215 l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 215 MKEGRVILQGNPKEVFA 231 (283)
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999998764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-17 Score=183.59 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.++++.+..++||+++.|+.. .+.+.+|+|++|
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l 219 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 4568899999999999999999999999999999999999999999999876656778777666443 677889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+++++.+
T Consensus 220 ~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 220 KEGSIVSQTSPKELFK 235 (286)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999888653
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-17 Score=175.33 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=112.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEE-EeccCCCCCCCCCHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG-YCEQNDIHSPFVTIY 645 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~v~q~~~~~~~lTv~ 645 (1140)
+.+.+|++++.++|++++|.||||+|||||++.++-. .+..++| |||.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4579999999999999999999999999999999621 0011122 4444321111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcEeEEeCC---
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 720 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP--- 720 (1140)
.++++++.+++.+.. .+++|.|+++++.+++++ +.+|++++||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 023445555554322 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 721 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+.+ |++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 999999887533 3344443 48999999996 478899999999985 78887765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=177.80 Aligned_cols=93 Identities=19% Similarity=0.334 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|++.++ .++|++++.|.+ ..+.+.+|+|++|
T Consensus 128 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 205 (222)
T cd03224 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVL 205 (222)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEe
Confidence 45678999999999999999999999999999999999999999999998765 577877776644 4677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 206 ~~G~i~~~~~~~~~~ 220 (222)
T cd03224 206 ERGRVVLEGTAAELL 220 (222)
T ss_pred eCCeEEEeCCHHHHh
Confidence 999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=178.63 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|++|+|||||+|||..+...+.+.++++++..++||+++.|++ ..+.+.+|++++|
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l 214 (233)
T cd03258 136 AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVM 214 (233)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 346789999999999999999999999999999999999999999999987665577888876754 3667889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (233)
T cd03258 215 EKGEVVEEGTVEEVF 229 (233)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-17 Score=180.34 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.+..++||+++.|++. .+. .+|+|++
T Consensus 137 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~ 214 (269)
T PRK13648 137 DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIV 214 (269)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEE
Confidence 44567899999999999999999999999999999999999999999999876545788888877665 444 5999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 215 l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 215 MNKGTVYKEGTPTEIF 230 (269)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999998875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-17 Score=172.84 Aligned_cols=94 Identities=29% Similarity=0.388 Sum_probs=83.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..+..|||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++ |+||++. ||-...+.+.||+|+.
T Consensus 134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~v-tHDL~~v~~~~D~vi~ 211 (254)
T COG1121 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMV-THDLGLVMAYFDRVIC 211 (254)
T ss_pred CCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCcHHhHhhCCEEEE
Confidence 3456779999999999999999999999999999999999999999999997765 8888875 5577789999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|+ ++++..|++++...
T Consensus 212 Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 212 LN-RHLIASGPPEEVLT 227 (254)
T ss_pred Ec-CeeEeccChhhccC
Confidence 96 68889999998763
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-17 Score=189.54 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++++ .++||+++.| ....+.+.+|+|++
T Consensus 134 ~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsH-dl~~~~~~adrii~ 211 (402)
T PRK09536 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIH-DLDLAARYCDELVL 211 (402)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEC-CHHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999999875 5778888766 44477799999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|++++++
T Consensus 212 l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 212 LADGRVRAAGPPADVL 227 (402)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999999865
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-17 Score=180.57 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=80.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|++|+|||||+|||+.+...+.+.+++++. .++||+++.|. ...+.+.+|+|++|
T Consensus 134 ~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~-~~~~~~~~d~i~~l 211 (274)
T PRK13647 134 KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHD-VDLAAEWADQVIVL 211 (274)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765 46777776554 33556889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
++|+++++|+++++
T Consensus 212 ~~G~i~~~g~~~~~ 225 (274)
T PRK13647 212 KEGRVLAEGDKSLL 225 (274)
T ss_pred ECCEEEEECCHHHh
Confidence 99999999998654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-17 Score=176.48 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=80.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|++|+|||||+|||..+...+.+.++++.+..++||+++.|++. ++.+.+|++++|
T Consensus 127 ~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (220)
T cd03293 127 AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVL 205 (220)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 3457899999999999999999999999999999999999999999999876555778887766544 677889999999
Q ss_pred c--CCeEEEecCcc
Q 001146 85 S--DGQIVYQGPRE 96 (1140)
Q Consensus 85 ~--~G~vvy~G~~~ 96 (1140)
+ +|+++++++.+
T Consensus 206 ~~~~G~i~~~~~~~ 219 (220)
T cd03293 206 SARPGRIVAEVEVD 219 (220)
T ss_pred ECCCCEEEEEEEec
Confidence 9 79999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-17 Score=180.63 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=81.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++.++..+.|||++-| ....+.+.+|+|++|
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH-~~~~~~~~~d~i~~l 225 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH-DLAVARLLAHRLLVM 225 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHhcCEEEEE
Confidence 3467899999999999999999999999999999999999999999999876544667766545 444566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 226 ~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 226 KQGRVVESGLTDQVL 240 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-17 Score=180.84 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=82.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+++.++++++..++||+++.|++. .+ ..+|+|++|
T Consensus 136 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l 213 (279)
T PRK13650 136 REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVM 213 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999877655788888777654 33 679999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 214 ~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 214 KNGQVESTSTPRELF 228 (279)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988765
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-17 Score=178.04 Aligned_cols=94 Identities=23% Similarity=0.205 Sum_probs=82.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||..+...+.+.+++.+++.++||+++.|++. .+.+.+|+|++|
T Consensus 110 ~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 188 (230)
T TIGR01184 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVML 188 (230)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778777766443 677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+..+++
T Consensus 189 ~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 189 TNGPAANIGQILEVP 203 (230)
T ss_pred eCCcEecccCceecc
Confidence 999999999766553
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-17 Score=185.05 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=78.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHH-hhccceEE
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIIL 83 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~-~~fD~I~v 83 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.+...+.+.++++.+ + +|++++. |+.+.+ +.+|+|++
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~-~Tii~iT--H~l~~i~~~~Driiv 296 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-K-YSIIIVT--HSMAQAQRISDETVF 296 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C-CEEEEEe--CCHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999988653 3 5544443 555555 45999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999986
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-17 Score=184.56 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=84.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++.||||||||++|||||+.+|++|+|||||+|||..+...+.+.++++++ .++||+++.|++ .++.+.+|+|++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~ 207 (303)
T TIGR01288 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCV 207 (303)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 577888876644 477788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 208 LESGRKIAEGRPHALID 224 (303)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-17 Score=179.77 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++++..++||+++.|++. .+.+.+|++++|
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l 214 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVM 214 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778777766444 566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-17 Score=181.38 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=82.9
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.+..++|||++.|++. .+.+.+|++++|
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l 224 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVM 224 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEE
Confidence 4567899999999999999999999999999999999999999999999877555777777666433 566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 225 ~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 225 DKGQIVEECDVAQLL 239 (265)
T ss_pred eCCEEEEECCHHHHc
Confidence 999999999999886
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-17 Score=175.59 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=81.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|++|+|||||+|||..+...+.+.++++++..++|++++.| ....+.+.+|+|++|
T Consensus 127 ~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH-~~~~~~~~~d~i~~l 205 (220)
T cd03265 127 RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH-YMEEAEQLCDRVAII 205 (220)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877644777777655 444777889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
.+|++++.|+++++
T Consensus 206 ~~G~i~~~~~~~~~ 219 (220)
T cd03265 206 DHGRIIAEGTPEEL 219 (220)
T ss_pred eCCEEEEeCChHHc
Confidence 99999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1140 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 7e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1140 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-26 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-04 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-08 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-05 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-09 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 8e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-PKKQETFA 626
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 627 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
R Y + + E L F A S + E ++ E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 746 VVCTIH 751
++ + H
Sbjct: 199 ILVSSH 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 2e-23
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 626
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
+I + + I +++ + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 745
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRG 770
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 4e-23
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 41/239 (17%)
Query: 553 MPEEMKVQGVL---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 607
M + + V+ + + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 608 YITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF------SAWLRLSPEV 660
I + G+ Q SPF ++ + +L + + +
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSH- 104
Query: 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720
D + + ++ + L L + + LS QR+ + IA + + +I +DEP
Sbjct: 105 DYQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEP 155
Query: 721 TSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
TS LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 10 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 64
+SGGQ++ + ++ A+A + +DE ++ LD + +++ L + T V
Sbjct: 129 LSGGQRQLI-----LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 65 ISL--LQPAPETYDLFDDIILLSDGQIVYQGPRELV 98
+ + + +LL+ + R ++
Sbjct: 184 FTTHQPNQVVA---IANKTLLLNKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 626
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 627 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
Y Q PF ++ L + +E +++V + L+
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 686 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 739 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-20
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 533 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 586
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 587 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644
G +G GKTTL+ +LAG + G + +S P+K + F
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPGTVRQLF--- 434
Query: 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 704
++ + F +V++ + ++ + V LS + +R+ I
Sbjct: 435 FKKI-----------RGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 705 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 747
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-14
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT---ISGYPKKQETFARISGYC 632
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 633 EQND---IHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
E + I +V I + L ++ E + +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 745 TVV 747
V+
Sbjct: 273 YVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 3e-20
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 510 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 566
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 624
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ-- 424
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
I T+YE L S + + E+++ + + L
Sbjct: 425 --YIK--------AEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDR 467
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 743
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 468 NV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 744 RTVV 747
+T +
Sbjct: 523 KTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-13
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK-- 621
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
Q F R+ + + +V + + L +VD + +EV++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 742 TGRTVV 747
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 28/130 (21%)
Query: 11 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQ 69
SGG+ +RV ++ A +DE S LD + +R + N TA V+
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--- 529
Query: 70 PAPETYDLF------DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE-- 121
+D+ D +I+ +G+ G L R+G+ FL
Sbjct: 530 -----HDVLMIDYVSDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVG 573
Query: 122 VTSRKDQRQY 131
+T R+D
Sbjct: 574 ITFRRDPDSG 583
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETF 625
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 626 ------ARISGYCEQNDIH---SPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVME 674
I G+ + + + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 735 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHI 58
+ I +S G+K+RV M+ AL L +DE + GLD +++ L
Sbjct: 156 QQYIGYLSTGEKQRV-----MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 59 NSGTAVISL----LQPAPETYDLFDDIILLSDGQIVYQGPRELVL 99
A+I ++ F I+LL DGQ + QG E +L
Sbjct: 211 YPTLAMI-YVTHFIEEITA---NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 636
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 637 IHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG----- 690
VT+ + + L + + D +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYLY--EEL--------KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 691 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 750 IHQPSIDIFEAF---DELFLMKRGGQEIYVGP 778
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 9e-19
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
I T+YE L S + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 746
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 747 V 747
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFARISGY 631
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 632 CEQNDIH----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
+I +V + + + L + D + ++EV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI- 156
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-18
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 625
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ T+ + +L + + T F +EV + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 746 VVCTI 750
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY------ 631
+ + ++G +G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 632 -----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
E +H Y S + + + DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 747 VCTIH 751
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 40/169 (23%)
Query: 11 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 65
SGG +R+ +V +L D+ S+ LD + +R+ + VI
Sbjct: 140 SGGGLQRL-----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVI 191
Query: 66 ------SLLQPAPETYDLFDDIILLSDGQIVYQG------PRELVLEFFAS------MGF 107
+L L D I ++ VY R + F M
Sbjct: 192 VVDHDLIVLD------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKI 245
Query: 108 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 156
R + K + + ++ KD + + + +F +
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKM---KWTKIIKKLGDFQLVVDNGEA 291
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 47/245 (19%)
Query: 541 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598
+ V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 599 VLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---FV--TIYESLLFS 651
++AG T +G++ G KK R G Q P F +++ + F+
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFDEVAFA 103
Query: 652 AWLRLSPE---VDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIA 705
+ D + + + + ME V L+ + P LS +++R+ IA
Sbjct: 104 ------VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIA 150
Query: 706 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765
+V P I+ +DEP GLD ++R V G+TV+ H + D +
Sbjct: 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVV 209
Query: 766 LMKRG 770
++++G
Sbjct: 210 VLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 11 SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
SGG+K+RV A+A L +DE GLD ++ + + G
Sbjct: 140 SGGEKRRV---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLG 188
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
VI + + D +++L G+ V+ G E
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 625
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 626 ARIS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPE---VDSETRKMFIDEVME 674
++ G Q+ P ++Y+ + F + + + +D ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 735 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 11 SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
S GQKKRV A+A L +DE + GLD +I+ L + + G
Sbjct: 145 SFGQKKRV---------AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELG 194
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADF 118
+I D++ ++ +G+++ QG + V E + R P+ + +
Sbjct: 195 ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEI 254
Query: 119 LQE 121
L+E
Sbjct: 255 LKE 257
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFA 626
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 627 RISGYCEQNDIHSPFVTIYESLL--FSAW------LRLSPEVDSETRKMFIDEVMELVEL 678
R N FV + L+ +A + + K + L+
Sbjct: 80 R-------NR-KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAK---ERGEYLLSE 127
Query: 679 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
+GL LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 -------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 734 RTVRNTVDTGRTVVCTIHQPSI 755
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 622
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 623 ------ETFARISGYCEQNDIH------------SPFVTIYESLLFSAWLRLSPEVDSET 664
TF Q + ES L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 665 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 725 DARAAAIVMRTVRNTVDTGRTVV 747
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 620
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 621 KQETFAR---ISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 675
+ T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 676 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 736 VRN-TVDTGRTVVCTIHQPSI 755
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 1e-12
Identities = 96/705 (13%), Positives = 181/705 (25%), Gaps = 236/705 (33%)
Query: 459 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTD 506
F D F P+++++ EEI+ D + G ++L S +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 507 DIRGQ-----------QSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 555
++ + S+ R + F Y+V +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQ 135
Query: 556 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI- 613
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 136 PYLK---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 614 --TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 671
+ C + T+ E L ++ P S + +
Sbjct: 186 WLNL--------------KNCNSPE------TVLEMLQ-KLLYQIDPNWTSRSDHSSNIK 224
Query: 672 VMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGLDARA 728
+ ++ ++ L L L ++ + L + L V N + +
Sbjct: 225 ----LRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAW------NAFNLSC 266
Query: 729 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDE-----LFL----MKRGG---QEIY 775
++ T R V + T H L L + + +
Sbjct: 267 KILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 776 VGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLY 835
P +S I+DG ATW D +H L
Sbjct: 325 TNPR------RLSIIAE-----SIRDG--LATW---------------DNWKHVNCDKLT 356
Query: 836 RRNKALIEDLSRPPPGSKDLY-----FPTQFSQSSWI-QFVACLWKQHWSYWRNPPYTAV 889
++ + L P + ++ FP S+ I + L W + + V
Sbjct: 357 TIIESSLNVLE--PAEYRKMFDRLSVFP----PSAHIPTILLSL------IWFDVIKSDV 404
Query: 890 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 949
SL ++ + + Y
Sbjct: 405 MVVVNKLHKY---SLV-------EKQPKES---------TISIPSIYLE----------- 434
Query: 950 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMY 1009
+ K Y AL + +++ Y + + F+ Y
Sbjct: 435 --LKVKLENEY-----ALHRSIVD-HYNIPK------------TFDSD--DLIPPYLDQY 472
Query: 1010 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFS------GFIIPRPRIPIWWRWY 1063
F++ G HH+ I +F F+ + R
Sbjct: 473 ----FYSHIG---------HHLKNI---EHPERMTLFRMVFLDFRFLEQKIR-------- 508
Query: 1064 YWANPIAWTLYGLVASQFGDMDDKK---MDTGETVKQFLKDYFDF 1105
+ AW G + + + K D ++ + DF
Sbjct: 509 --HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 100/669 (14%), Positives = 196/669 (29%), Gaps = 212/669 (31%)
Query: 87 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 130
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 131 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 187
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 188 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 238
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 239 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 294
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 295 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 354
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 355 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 402
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 403 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 437
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 438 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 478
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 479 QDDRIGGNVQLSTLGGSSNHNTRS--GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 536
+ + S + +T S +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 537 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 584
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 585 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 641
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 642 VTIYESLLF 650
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 44/256 (17%), Positives = 81/256 (31%), Gaps = 70/256 (27%)
Query: 25 VGP-ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83
P L++ + I GL + ++ VNC + I S +++L+PA E +FD + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSV 380
Query: 84 LSD-------------GQIVYQGPRELVLEFFA-SMGFRCPKRK--GVADFLQEVTSRKD 127
++ +V + S+ + PK + E+ + +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 128 QR----------------------------QYWA-----HKEKPYRFVTVQEFAEAFQSF 154
QY+ H + + F F F
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 155 H-VGQKISDELRTPFDKSKSHRAALTT-ETYGVGKRELLKANISRELL-------LMKRN 205
+ QKI + T ++ S S L + Y K + + E L L K
Sbjct: 501 RFLEQKIRHD-STAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIE 556
Query: 206 SFVYIFK---LIQIAF 218
+ K L++IA
Sbjct: 557 ENLICSKYTDLLRIAL 572
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 629 SGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
Y E + D ++ + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 72/222 (32%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 616
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 617 GYPKK---------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 659
G+ Q+ R +I +++ + +P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA-----NPG 109
Query: 660 VDSETRKMFIDEVMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELV 709
+ E +V+ +L + LR+ ++VG G LS QR+R+ IA LV
Sbjct: 110 MSVE-------KVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 600
++ F +V +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 601 AGRKTGGY-ITGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFS 651
R Y G+I I G + I G Q N+ TI ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 652 AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELV 709
EV T+ + + + L P + ++VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 770 GG 771
G
Sbjct: 229 GK 230
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 46/222 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L VS PG AL+G SGAGK+T++ D+ +G I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 623 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLS---PEVDSETRKMFIDE 671
T A G Q ND TI +++ + R++ EV++ + I +
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTAGNDEVEAAAQAAGIHD 171
Query: 672 -VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729
+M P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 172 AIMAF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 730 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
+ ++ V RT + H+ S + A D++ ++K G
Sbjct: 227 RAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 7e-10
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 623 ETFA----RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSP-EVDSETRKMFIDE-VM 673
+ +I G+ Q+ + TI E+L + + ++ F V
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 674 ELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 733 MRTVRNTVDTGRTVV 747
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-10
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 58/227 (25%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 621
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 622 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 665
QE FA TI E++ + E++ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGREDVTMDEIEKAVK 501
Query: 666 KMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
+ + +M+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 502 EANAYDFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 724 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
LD + A+V + GRT + H+ S + A D + G
Sbjct: 557 LDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 623 ETFARISGYCEQNDIHS--PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 677
+ Q I S P + +I E++ + R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 678 LNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 731 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 63/213 (29%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 621
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 622 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 665
QE F R + E++ + + E +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGLTRTPTMEEITAVA 130
Query: 666 KM-----FIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719
FI P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 131 MESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 720 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 751
TS LDA V R + + RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 584 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 640
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700
+++Y ++ + LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 701 RLTIAVELVANPSIIFMDEPTSGLDAR 727
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 47/209 (22%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 624 TFARISGYCEQNDIHS-------PFVTIY--ESLLFSAWLR--LSP---EVDSETRKMFI 669
S + + +FS R L P D E I
Sbjct: 83 ------------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-----I 125
Query: 670 DEVMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
+V + V L + + G + G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 724 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
LD I+ RT++ TV+ +
Sbjct: 186 LDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 627 RIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 681
R G Q N + S T++ ++ L L P+ + + R V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR------VTELLSL--- 150
Query: 682 RQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITIS 616
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 617 GYPKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
P+ ++ F Q P +T +E++ F + + R ++EV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 674 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 627 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
R GY Q P +T+Y ++ + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 685 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 628 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 682
IS +C Q + ++ TI E+++ ++ D V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 683 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R G QN +T+Y+++ F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 694 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 748 CTIHQPSIDIFEAFDELFLMKRGGQEIYV 776
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 616
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 617 GYPKK---------------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--- 658
G+ K Q+ S T+ E++L R +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 659 EVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716
EV + + +M L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 717 MDEPTSGLDAR 727
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 616
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 617 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKM 667
G+ + R Q ND TI ++ ++A + E ++ R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQA 457
Query: 668 FIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
E + + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 458 HAMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 726 AR 727
Sbjct: 513 TE 514
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 628 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
IS +C Q ++ TI E+++F + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 685 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 628 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 682
++ Y Q ++ ++ E++LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 683 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 736
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 737 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 622
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 623 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDE-V 672
T A Q ND T+ ++ ++ S E ++ R + + +
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYARTEEYSREQIEEAARMAYAMDFI 463
Query: 673 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
++ +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKM----DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 621
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 622 QETFARISGYCEQNDIHSP-----F--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 674
I+ P F +T+YE+L+ A+ R D E K ++ +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 675 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 734 RTVRNTVDTGRTV 746
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 52/199 (26%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 617
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 618 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660
YP E + G VTI L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREV 113
Query: 661 DSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717
+ + +EL++ + L + L G G G ++KR I LV P+ +
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVL 167
Query: 718 DEPTSGLDARAAAIVMRTV 736
DE SGLD A +V R V
Sbjct: 168 DETDSGLDIDALKVVARGV 186
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSL 685
+ QN P + + ++L F +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 686 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 618
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 619 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 674
PK + F QN P +T+Y+++ F LR +P + + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 732
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 733 MRT 735
+R
Sbjct: 172 VRA 174
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 68/205 (33%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 617
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 618 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--- 657
YP E I G V+ F L+ +
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF---F---LQTALNA 124
Query: 658 -------PEVDSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVE 707
+D + ++E + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 708 LVANPSIIFMDEPTSGLDARAAAIV 732
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 585 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFARISGYCEQ 634
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 635 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694
+ P +T+YE++ F ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 735
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 618
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 619 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 674
PK +E F QN P +T++E++ F R + + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 675 LVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 727
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 728 AAAIVMRT 735
MR
Sbjct: 170 MI---MRA 174
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 759
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 760 AFDELFLMKRGGQEIYVGPLG 780
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 585 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARISGYCE---------- 633
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 634 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693
Q+ P +T+Y+++ F LR P + + R + EV EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKPR--E 139
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 735
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1140 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.85 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.83 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.83 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.82 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.79 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.79 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.79 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.78 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.78 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.78 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.78 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.78 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.78 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.77 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.77 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.77 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.77 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.76 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.76 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.76 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.76 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.76 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.76 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.76 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.76 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.75 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.75 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.75 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.75 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.75 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.75 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.75 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.75 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.75 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.75 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.75 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.75 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.74 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.74 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.74 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.73 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.73 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.73 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.72 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.72 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.72 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.72 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.71 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.69 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.68 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.68 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.68 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.68 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.64 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.64 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.63 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.6 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.58 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.58 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.58 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.58 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.56 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.55 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.53 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.52 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.52 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.52 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.45 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.44 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.39 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.38 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.38 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.37 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.36 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.36 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.36 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.36 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.31 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.3 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.29 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.26 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.26 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.26 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.24 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.22 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.21 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.21 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.21 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.19 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.19 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.18 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.14 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.13 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.13 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.12 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.02 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.02 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.02 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.0 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.96 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.94 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.94 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.91 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.88 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.8 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.78 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.75 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.75 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.71 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.66 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.66 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.64 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.63 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.58 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.58 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.52 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.51 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.48 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.46 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.46 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.44 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.43 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.41 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.4 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.33 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.25 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.22 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.19 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.16 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.11 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.07 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.06 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.04 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.97 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.95 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.94 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.91 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.91 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.9 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.87 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.86 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.85 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.8 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.79 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.72 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.71 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.68 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.68 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.64 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 97.6 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.58 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.57 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.57 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.56 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.55 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.55 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.53 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.49 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.49 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.48 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.47 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.46 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.45 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.42 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.42 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.38 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.37 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.36 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.33 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.33 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.31 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.29 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.29 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.24 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.23 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.2 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.19 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.18 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.1 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.09 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.08 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.05 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.03 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.01 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.01 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.99 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.97 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.95 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.93 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.93 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.89 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.87 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.85 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.85 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.77 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.69 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.68 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.64 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.53 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.52 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.51 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.49 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.38 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.34 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.33 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.32 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.32 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.3 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.29 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.29 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.26 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.24 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.21 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.21 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.2 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.15 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.99 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.93 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.87 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.81 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.81 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.75 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.75 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.67 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.59 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.55 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.48 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.47 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.47 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.46 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.45 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.4 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.32 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.32 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.28 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.25 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.18 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.18 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.16 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.14 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.14 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.13 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.12 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.08 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.05 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.03 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.03 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.01 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.91 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.89 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 94.86 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 94.83 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.71 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.71 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.7 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.68 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.54 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.51 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.45 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.35 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.26 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.25 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.25 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.2 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.14 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.13 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 94.06 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.05 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.01 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.99 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 93.97 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 93.94 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.94 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 93.93 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.92 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 93.9 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.87 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.83 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.81 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.78 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 93.76 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.73 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 93.71 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.71 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.7 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.7 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 93.69 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.66 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.56 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.49 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.46 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 93.45 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 93.44 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.34 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 93.27 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 93.27 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 93.17 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 93.12 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 93.1 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 93.04 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 92.99 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 92.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 92.89 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 92.89 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 92.87 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 92.86 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 92.85 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 92.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 92.8 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 92.79 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 92.78 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.74 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 92.7 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 92.7 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 92.67 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.66 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 92.64 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 92.64 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.59 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 92.55 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 92.55 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 92.52 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 92.51 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 92.47 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 92.46 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 92.45 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 92.44 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 92.44 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 92.43 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 92.42 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 92.4 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 92.4 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 92.39 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 92.38 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 92.38 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 92.34 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 92.34 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 92.33 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 92.3 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 92.29 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 92.28 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 92.26 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 92.22 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 92.19 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 92.15 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 92.13 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 92.11 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 92.03 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 92.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 92.02 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 92.01 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 92.0 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 91.99 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 91.97 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 91.93 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 91.93 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 91.92 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 91.88 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 91.88 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 91.78 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 91.75 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 91.75 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 91.72 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.72 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 91.71 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 91.69 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 91.66 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 91.65 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 91.64 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 91.57 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 91.53 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 91.51 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 91.49 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 91.48 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 91.47 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 91.47 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.45 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 91.41 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 91.34 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 91.33 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 91.31 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.31 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 91.28 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 91.28 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 91.27 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 91.2 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 91.19 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 91.19 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 91.18 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 91.16 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 91.1 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 91.09 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 91.08 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 91.06 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 91.06 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 91.04 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 91.02 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 91.02 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=651.63 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=184.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.|+|+||+|+|+.+ .+.++|+|+||+|+|||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETT
T ss_pred CCCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECC
Confidence 34679999999999743 234589999999999999999999999999999999998774 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g 687 (1140)
.+++. ..+|+++++||||+.+|+ .|++|||.|+.. +.+.++++ +.++++..++. +-.||.+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEec
Confidence 98765 467889999999999987 699999987531 23344433 55666666553 45688888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..| ..||||||||++|||||++||+||+||||||+||+++++.|++.|+++. +|+|+|+++|+++. ...+|||++|
T Consensus 1213 e~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVV 1288 (1321)
T ss_dssp TTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEE
T ss_pred CCC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEE
Confidence 765 4699999999999999999999999999999999999999999998864 58999999999974 5679999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++.+|+++
T Consensus 1289 d~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1289 SN-GTIIEKGTHT 1300 (1321)
T ss_dssp SS-SSEEEEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=590.98 Aligned_cols=217 Identities=27% Similarity=0.377 Sum_probs=177.2
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++||+++|+.+ .+.++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSS
T ss_pred CCcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCE
Confidence 4579999999999632 123589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .||+||+.++... ...+.++ +.+.++..+ +.+..|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 346788999999998775 7999999875311 1223332 223333333 34456777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+|||||||||+.++..+.+.|++. .+|+|+|+++|+++. + ..||||++|+
T Consensus 1168 ~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999885 459999999999974 4 6699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 1244 ~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 N-GKVKEHGTHQ 1254 (1284)
T ss_dssp T-BEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=402.07 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=192.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|... .++.++|+||||+|++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 49999999999631 1245799999999999999999999999999999999998774 489999999987
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... ..|+.+|||+|++.+++.+||+||+.++...+ ....++.+++++++++.+||.+..+..+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 531 23567999999999999999999999987654 2345666778999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ .+.++|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57889999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|++.
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=381.77 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=186.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 6889999999621 1135699999999999999999999999999999999998874 4899999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCc
Q 001146 622 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 693 (1140)
Q Consensus 622 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~ 693 (1140)
... .++.+|||+|++.+++.+||+||+.++...+.......++.++++.++++.+++.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1346999999999999999999999987654322344556667788999999998643 554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.|||+++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4689999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99998874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=402.52 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=191.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 388999999983 35689999999999999999999999999999999998874 489999999987
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
... ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..+..+ .+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 542 23567999999999999999999999987654 2456666778999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++|||++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
+.
T Consensus 218 ~~ 219 (381)
T 3rlf_A 218 PL 219 (381)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=427.49 Aligned_cols=202 Identities=23% Similarity=0.276 Sum_probs=168.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. ..|+++|+++++||+++|+||||||||||+++|+|..++. +|+|.+
T Consensus 357 ~l~~~~l~~~~~~--------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECSS--------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC-----
T ss_pred EEEEeceEEEecc--------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE-----
Confidence 4788898877631 2589999999999999999999999999999999987643 677764
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.+.++|++|+....+.+||.|++....... ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 245899999987778899999887541100 011245688999999988777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +.|.|||+++||+. .+..++||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57789999999973 278888999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=388.90 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|+ +++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 489999999984 123589999999999999999999999999999999998774 489999999987
Q ss_pred C--c---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 K--Q---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~--~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. . ...++.+|||+|++ ..+..+||+||+.|+.... ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 23467899999986 3344799999999987643 2345566677899999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.++|||+++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57789999999985 899
Q ss_pred EEECCCCc
Q 001146 774 IYVGPLGR 781 (1140)
Q Consensus 774 ~~~g~~~~ 781 (1140)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=400.74 Aligned_cols=215 Identities=25% Similarity=0.399 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++++|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 388999999983 35689999999999999999999999999999999998874 489999999876
Q ss_pred ----Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ----~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.+|||+|++.++|.+||+||+.|+...+. ...++.+++++++++.++|.+..+..+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 2345679999999999999999999999764432 233455667899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|.|+|++|||++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887765 46999999999986 68899999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 219 ~~g~~~ 224 (359)
T 3fvq_A 219 QTASPH 224 (359)
T ss_dssp EEECHH
T ss_pred EEeCHH
Confidence 999875
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=376.26 Aligned_cols=213 Identities=22% Similarity=0.272 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 388999999883 24689999999999999999999999999999999998774 489999999886
Q ss_pred Ccc------ccc-ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~------~~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... ..+ +.++||+|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..+..+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 57999999999999999999999876543 1233444567889999999988877664 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ +.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 34 88999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
++.|++
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=382.65 Aligned_cols=214 Identities=25% Similarity=0.332 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 389999999983 24689999999999999999999999999999999998774 489999999876
Q ss_pred C--c---ccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. . ...++.++||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.++|.+..+..+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 332 2234444567889999999988877664 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 57788999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
..|++
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99986
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=421.60 Aligned_cols=216 Identities=20% Similarity=0.242 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++..+.. ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~~--------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEECC--------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 4778888877631 247888999999999999999999999999999998774 378888654
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
+.++|++|+....+.+||+||+.+...... . . ....++++++.+++.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 347899998776678999999987421110 0 1 1234678899999988777764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ ++..+||||++|++ .|.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 67889999999974 245666676
Q ss_pred CCcchhHHHHHHhhC
Q 001146 779 LGRHSCHLISYFEAI 793 (1140)
Q Consensus 779 ~~~~~~~~~~~f~~~ 793 (1140)
+......+..++...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333445555544
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=420.15 Aligned_cols=202 Identities=24% Similarity=0.288 Sum_probs=167.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. ..|+++|+++++||++||+||||||||||+++|+|..++. +|+|.+
T Consensus 287 ~l~~~~l~~~~~~--------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC-----
T ss_pred EEEEeeEEEEECC--------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE-----
Confidence 4788899887731 2589999999999999999999999999999999987643 677764
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++|++|+....+.+||.|++........ . .++.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999877788999998865311110 0 1234678899999987776654 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +.|.|||+++||++ ++..+|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999986 67889999999984 278888999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+++
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-43 Score=382.77 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 89999999983 24689999999999999999999999999999999998774 4899999998764
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 001146 622 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-RQ 683 (1140)
Q Consensus 622 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~ 683 (1140)
. ...++.++||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123567999999999999999999999864 332 22344455678999999999887 77
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 684 ~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 654 579999999999999999999999999999999999999999999999877999999999986 57789999
Q ss_pred EEEEecCCEEEEECCC
Q 001146 764 LFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~ 779 (1140)
+++|++ |+++..|++
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899999985
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=378.48 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 489999999983 24689999999999999999999999999999999998774 489999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.++|++|++.+++.+||+||+.+...... ...++.+++++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233444456889999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++..+||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999975 56678999999985 89999987
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=393.54 Aligned_cols=217 Identities=24% Similarity=0.367 Sum_probs=190.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+ +++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEE
Confidence 4689999999872 123489999999999999999999999999999999998874 48999999988
Q ss_pred cCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
+.. ...++.++||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ .+|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 743 234577999999999999999999999987654 2345555677899999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998754 999999999986 67889999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 229 ~~~ 231 (355)
T 1z47_A 229 TPE 231 (355)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=381.67 Aligned_cols=218 Identities=25% Similarity=0.287 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++++|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 489999999983 24689999999999999999999999999999999998774 489999999886
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 686 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 686 (1140)
... ..++.++||+|++.+++.+||+||+.++... +... ....++.+++++++++.+++.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999999999999999986532 1110 0122334456889999999988877764
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999997 57789999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|++ |++++.|+++
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 8999999874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=393.74 Aligned_cols=214 Identities=24% Similarity=0.346 Sum_probs=187.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 78999999883 24689999999999999999999999999999999998874 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+... ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2233444567899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 219 ~ 219 (359)
T 2yyz_A 219 D 219 (359)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=393.47 Aligned_cols=214 Identities=26% Similarity=0.388 Sum_probs=188.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78999998873 24589999999999999999999999999999999998774 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999987654 2345555677899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 219 ~ 219 (362)
T 2it1_A 219 D 219 (362)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=393.46 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++++|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEEC
Confidence 378999999883 24689999999999999999999999999999999998874 489999999876
Q ss_pred Cc-------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQ-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----cc
Confidence 32 123567999999999999999999999987654 2345555677899999999998887764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~ 217 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|++.
T Consensus 218 i~~~g~~~ 225 (372)
T 1g29_1 218 LQQVGSPD 225 (372)
T ss_dssp EEEEECHH
T ss_pred EEEeCCHH
Confidence 99999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=419.73 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=160.3
Q ss_pred eeeeCceEEEeCc-----eEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCC
Q 001146 568 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 568 ~iL~~vs~~i~~G-----~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 642 (1140)
.+++|+|+++++| |+++|+||||||||||+++|+|..++. +|+ ... +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Ccc----CCcEEEecccccccCCc
Confidence 3688999999988 789999999999999999999987643 453 111 24589999987666668
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
||+|++... .+. .... ...++++++.+++.+..+..+ ..|||||||||+|||||+.+|++|||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 221 1111 234678899999998877764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCCCcchhHHHHHHhhC
Q 001146 723 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~~~~~~~~~~~f~~~ 793 (1140)
|||+.++..+.+.|++++ +.|.|||++|||++ ++..++||+++|++ .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 67889999999984 278999999975433333344443
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=373.09 Aligned_cols=214 Identities=22% Similarity=0.328 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 489999999984 24689999999999999999999999999999999998774 489999999887
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCC
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LS 695 (1140)
... . .++.++|++|++.+++.+||+||+.+..... ...++.++.++++++.++ +.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999999864211 111233455788899994 87776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57789999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 98763
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=378.81 Aligned_cols=214 Identities=24% Similarity=0.315 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 589999999884 35689999999999999999999999999999999998774 379999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ...++.++|++|++.+++.+||+||+.++..... ..+.+++++++++.+++.+..+..+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 2345679999999988888999999998754321 1123455789999999998877764 579999
Q ss_pred HHHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 698 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 698 qrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++|||+++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 89999999754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=393.11 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 89999999983 24689999999999999999999999999999999998874 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875332 2345556677899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=392.81 Aligned_cols=214 Identities=27% Similarity=0.374 Sum_probs=187.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCcee--eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
++++|++++|. +++ +|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 78999999984 123 89999999999999999999999999999999998774 48999999987
Q ss_pred cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 620 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
+.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234677999999999999999999999976443 2345555677899999999998888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999986 68889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 219 i~~~g~~~ 226 (353)
T 1oxx_K 219 LVQVGKPE 226 (353)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=431.66 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=155.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+. .++++|+|+|+++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--
T ss_pred eEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEcCc--
Confidence 4889999998841 124589999999999999999999999999999999998774 3899999863
Q ss_pred CcccccceEEEeccCCCC----CCCCCHHHHHHHHHHcc------------CC---------------------------
Q 001146 621 KQETFARISGYCEQNDIH----SPFVTIYESLLFSAWLR------------LS--------------------------- 657 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~----~~~lTv~e~l~~~~~~~------------~~--------------------------- 657 (1140)
..++|++|++.+ ....|++|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788776421 12356777665421000 00
Q ss_pred -------------------------CCCC----------------------------------HHHHHHHHHHHHHHcCC
Q 001146 658 -------------------------PEVD----------------------------------SETRKMFIDEVMELVEL 678 (1140)
Q Consensus 658 -------------------------~~~~----------------------------------~~~~~~~~~~~l~~~~l 678 (1140)
...+ ....++.++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 0000 00012457889999999
Q ss_pred ccc--ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 679 NPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 679 ~~~--~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
.+. .+.. +++|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 742 3444 3579999999999999999999999999999999999999999888654 679999999975 5
Q ss_pred HHHhhceEEEEecCCEEEEECC
Q 001146 757 IFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 757 ~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+.++||++++|.+ |+++..|+
T Consensus 961 v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBT-TBCCC---
T ss_pred HHHhCCEEEEEEC-CEEEEeCC
Confidence 6678999999985 78887775
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=423.36 Aligned_cols=195 Identities=26% Similarity=0.297 Sum_probs=141.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhc---------------CCc--C--ceEEEEEEEcCcccCcccc----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---------------RKT--G--GYITGNITISGYPKKQETF---- 625 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g---------------~~~--~--~~~~G~i~~~g~~~~~~~~---- 625 (1140)
+|+|||++|++||++||+||||||||||+++|.+ ... . ....|.+.+++.+......
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 6999999999999999999999999999987641 000 0 0123567777766431100
Q ss_pred ----------------------------------------cceEEEeccCCCCC--------------------------
Q 001146 626 ----------------------------------------ARISGYCEQNDIHS-------------------------- 639 (1140)
Q Consensus 626 ----------------------------------------~~~~~~v~q~~~~~-------------------------- 639 (1140)
.+..|++.|+..++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 00112233322221
Q ss_pred ------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 640 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 640 ------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
..+||+||+.+... . .. .++..+.++.+++... .+.. +..|||||||||+|||||+.+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~------~-~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTT------C-HH--HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHhhCCHHHHHHHHHH------h-hh--HHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCC
Confidence 24799999987431 1 11 2234677888888642 3433 3579999999999999999887
Q ss_pred ---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 713 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 713 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ..+.|||+++|. ++|++++.|++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 599999999999999999999999999888999999999975 457799999993 35899999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=386.71 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=183.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++ +|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 67899998873 24 89999999999999999999999999999999998874 4899999998874
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..+..+ ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998754321 111 45789999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.+ .|.|+|++||+++ ++..++||+++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=368.98 Aligned_cols=219 Identities=26% Similarity=0.273 Sum_probs=176.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|. ++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999999983 24689999999999999999999999999999999997211256899999998864
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCc-CC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 695 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~g~~~~~~-LS 695 (1140)
.. . .++.++|++|++.+++.+||+||+.+.............+.+++++++++.+++ .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 134589999999999999999999886532111112233344568899999999 47777653 45 99
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998767999999999986 45556 599999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=376.75 Aligned_cols=213 Identities=24% Similarity=0.331 Sum_probs=176.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 45799999999985 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. ....+ .++++++.+++.+ -.++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCHH----HHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 345778999999998885 699999998632 12222 2445555555543 23455554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...|||||||||+|||||+++|+||||||||||||+.++..+++.|+++.+ ++|+|+++|+++ .+ ..+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TV-VNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HH-HTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HH-HcCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 799999999986 34 4599999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 263 ~-G~iv~~G~~~ 273 (306)
T 3nh6_A 263 D-GCIVERGRHE 273 (306)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=365.96 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. + +|+|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 57899999883 1 49999999999 99999999999999999999998774 4899999998864
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+||+||+.+....+ .....+++++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999998864321 11222556889999999988777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999985 899999985
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=371.86 Aligned_cols=217 Identities=22% Similarity=0.329 Sum_probs=181.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.... ...+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 78999999984100 0015689999999999999999999999999999999998774 4899999998875
Q ss_pred cccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCcCCHHH
Q 001146 622 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~~LSgGq 698 (1140)
....++.++||+|++ ..++.+||+||+.+...... ..++.+++++++++.++|. +..+..+ +.|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334566799999985 46677999999998643221 1111234578899999998 7777664 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++ |+++..|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999987 56778999999985 89999987
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=366.93 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999999983 2468999999999999999999999999999999999742225689999999876
Q ss_pred Ccc---cc-cceEEEeccCCCCCCCCCHHHHHHHHHH-c---cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW-L---RLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... .. ++.++|++|++.+++.+||.|++.+... . ......+.++.+++++++++.+++. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 3358999999999999999999987542 1 1111223444456788999999996 45565431
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 770 (1140)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999999874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.12 Aligned_cols=218 Identities=23% Similarity=0.379 Sum_probs=180.7
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 3589999999984 24689999999999999999999999999999999998774 48999999987
Q ss_pred cC--c---ccccceEEEeccCCCCC--CCCCHHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~--~---~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+. . ...++.++|++|++.+. +.+||+||+.++.... ...... ++.+++++++++.+++.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID-DEIRNEAHQLLKLVGMSAKAQQYI---- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CC-HHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCc-HHHHHHHHHHHHHcCChhHhcCCh----
Confidence 64 2 23456799999987543 3569999998753210 001112 233456789999999988877764
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEE--EEEecCCCHHHHHhhceEEEEe
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|| |++||+++ ++.+.||++++|+
T Consensus 160 -~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 160 -GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 5799999999999999999999999999999999999999999999997669999 99999986 5678899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |++++.|+++
T Consensus 238 ~-G~i~~~g~~~ 248 (279)
T 2ihy_A 238 D-GQSIQQGAVE 248 (279)
T ss_dssp T-TEEEEEEEHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=358.16 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|.. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE------
Confidence 3889999999830 23589999999999999999999999999999999998774 389997
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.++.++|++|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..+..+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 245699999999999899999999986432110 00111233456789999999998877653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 56789999999985 78 88887
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 212 ~~ 213 (253)
T 2nq2_C 212 TR 213 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=409.44 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=145.3
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHH---------HHHhcCCc-C---ceEEE------EEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-G---GYITG------NITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~----- 624 (1140)
.|+|||+++++|++++|+||||||||||+ +.+.+... . ....| .+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 49999999999999999999999999997 34444211 1 12233 3555554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001146 625 ---------------------------------------FARISGYCEQNDIHSP------------------------- 640 (1140)
Q Consensus 625 ---------------------------------------~~~~~~~v~q~~~~~~------------------------- 640 (1140)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012366666655544
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-
Q 001146 641 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 712 (1140)
Q Consensus 641 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p- 712 (1140)
.+||.|++.|... . ....++.++++.+||.... .+. ....|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq-~~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQ-PATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTC-CSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccC-CccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888877421 1 1223467889999996432 122 23579999999999999999875
Q ss_pred --cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 713 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 713 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|+++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999974 456799999993 479999999974
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=359.98 Aligned_cols=213 Identities=26% Similarity=0.418 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 5 ~~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~ 71 (247)
T 2ff7_A 5 HHDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGH 71 (247)
T ss_dssp CEEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred cCceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999998831 134689999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++. + .... +.++++++.+++.+..+.. .+.
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 72 DLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred EhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 8643 234567999999998886 69999998752 1 1222 2356777888887654432 222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|+
T Consensus 142 -~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~ 217 (247)
T 2ff7_A 142 -QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVME 217 (247)
T ss_dssp -TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEE
T ss_pred -CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 246799999999999999999999999999999999999999999999985 5999999999986 34 5699999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|++
T Consensus 218 ~-G~i~~~g~~ 227 (247)
T 2ff7_A 218 K-GKIVEQGKH 227 (247)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=359.09 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++ ++|+|+|+++++||+++|+||||||||||+|+|+|..+ +. |+|.++|.++.
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 788888864 26999999999999999999999999999999999877 45 99999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++.+||+||+.+... . ... +++++++++.+++.+..+..+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999999999999999987521 1 112 345789999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 699 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 699 rqRv~ia~al~~~p~-------illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|||++|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999767999999999976 56789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 210 ~i~~~g~~~ 218 (249)
T 2qi9_C 210 KMLASGRRE 218 (249)
T ss_dssp EEEEEEEHH
T ss_pred EEEEeCCHH
Confidence 999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=352.17 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=171.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++++|++++|. + ++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 9 ~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 3589999999873 2 589999999999999999999999999999999998774 48999999988
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+.. ... +++++++++.+++.+. +.. +..||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHH
Confidence 65 3567799999999999999999999987654321 111 2347889999999876 554 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++.
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 9999999999999999999999999999999999999998767899999999997 5777889888764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=365.42 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|... +++++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 59999999988410 124589999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC-HH----HHHHHHHHHHHHc--CCcccccccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SE----TRKMFIDEVMELV--ELNPLRQSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~----~~~~~~~~~l~~~--~l~~~~~~~~g~~~ 690 (1140)
.. ..+++.++||+|++.+++ .||+||+.++.... .. .+ ..+..++++++.+ ++.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11 11 1122345667777 566555544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ +|+|||++||+++ ....||++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999975 3456999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 8999999863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=398.48 Aligned_cols=195 Identities=29% Similarity=0.371 Sum_probs=147.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-c----C-----CcCc---eEEE------EEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~----- 624 (1140)
.|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999863 2 1 1222 2344 5888887753100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001146 625 -----------------FARISGYCEQNDIHS----------------------P------------------------- 640 (1140)
Q Consensus 625 -----------------~~~~~~~v~q~~~~~----------------------~------------------------- 640 (1140)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 012346666632211 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 641 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 641 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
.+||.|++.|... . .. ..++.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3688888876321 1 11 123467899999976 44444 3579999999999999999865
Q ss_pred ---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 713 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 713 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
++|||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999994 36899999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=354.80 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=174.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 67899998873 123589999999999999999999999999999999998774 3799999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------g~~~~ 691 (1140)
. ..+++.++|++|++.+++ .||+||+.++.. ..... +.++++++.+++.+..+... +. ..
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 235677999999998887 599999987421 11222 23678888889887665432 22 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999987 6999999999975 3456999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 999888764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=395.29 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 001146 667 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742 (1140)
Q Consensus 667 ~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~ 742 (1140)
+++.++++.++|... .+.. +..|||||||||+||++|+.+ |+||+|||||+|||+.+...+.+.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999763 3433 357999999999999999996 7999999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 743 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 743 g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
|.|||+++|+++ .+ +.+|++++|. ++|++++.|++
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999975 34 8899999994 46899999986
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=350.01 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=173.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|... ...+++|+|+|++++ ||+++|+||||||||||+++|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6789999998510 012468999999999 9999999999999999999999987 54 899999998764
Q ss_pred cccccceEE-EeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHH
Q 001146 622 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~~~~~~~~~-~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqr 699 (1140)
....++.++ |++|++.+ .+||+||+.+..... ... +++++++++.+++. +..+..+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 311256789 99999877 799999999876443 111 23478899999998 7777653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc-eEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.|| ++++|++ |+++..|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 5678899 9999985 89999998
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=351.76 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|... ..+++|+|+|+++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48999999988421 11358999999999999999999999999999999999875 3 79999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 690 (1140)
.. ...++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++.+. .++.++. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 43 234667999999998886 699999987421 1122 224566666666543 2333332 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 8999999999863 4 56999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999986
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=367.65 Aligned_cols=213 Identities=20% Similarity=0.271 Sum_probs=177.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSC
T ss_pred CCeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCE
Confidence 346999999999841 23468999999999999999999999999999999999864 4799999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------C
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------P 689 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~------~ 689 (1140)
++.. ...++.++||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..+..... .
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 8753 234678999999999988 69999996321 112 23467899999998776665321 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
....|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +++|+|+++|+++ ....+||+++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 123499999999999999999999999999999999999999999998864 5899999999974 4567999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 229 -G~i~~~g~~~ 238 (390)
T 3gd7_A 229 -NKVRQYDSIL 238 (390)
T ss_dssp -TEEEEESSHH
T ss_pred -CEEEEECCHH
Confidence 8999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=337.99 Aligned_cols=200 Identities=23% Similarity=0.380 Sum_probs=158.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999998841 12458999999999999999999999999999999999887 5689999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc------cc-ccccccCCCCCcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PL-RQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~-~~~~~g~~~~~~L 694 (1140)
.++||+|++.+ +.+||+||+.+.... ..+. .+++++.+++. +. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999875321 1111 12233333332 11 1122222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999873 3 57999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999999863
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=336.38 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 5899999998741 234589999999999999999999999999999999998774 489999998
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCc
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~~ 693 (1140)
.++|++|++.+++. ||+||+.++.. .... ..+++++.+++.+.. ++.++. ....
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988885 99999987421 1111 123344444443322 222332 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.+ +++. +|+|||++||+++ . .+.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~-~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-H-HHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-H-HHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 3 456999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999986
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=388.21 Aligned_cols=216 Identities=21% Similarity=0.323 Sum_probs=177.2
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECC
Confidence 3457999999999852 234589999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g 687 (1140)
.++.. ..+++.++||+|++.+++ .||+||+.++. +..++++ +.++++..++. +-.|+.+|
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGR-----EDATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTC-----SSCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccC-----CCCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 345778999999999886 59999998752 1223322 23344444433 34466666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ .+||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +|+|+|+++|+++ ....+||+++|
T Consensus 475 ~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 543 5699999999999999999999999999999999999999999999874 5899999999975 35689999999
Q ss_pred ecCCEEEEECCCCc
Q 001146 768 KRGGQEIYVGPLGR 781 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~ 781 (1140)
++ |+++..|++++
T Consensus 551 ~~-G~i~~~g~~~e 563 (587)
T 3qf4_A 551 HE-GKVAGFGTHKE 563 (587)
T ss_dssp ET-TEEEEEECHHH
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=387.75 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=177.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 457999999999852 234589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++. ||+||+.++. +..+++ .+.++++..++. +-.|+.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8754 3456789999999998875 9999998752 122222 244555555543 334566665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ .+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +++|+|+++|+++. .+.+||+++|+
T Consensus 474 ~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 43 5699999999999999999999999999999999999999999999875 47999999999873 45699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 550 ~-G~i~~~g~~~ 560 (578)
T 4a82_A 550 N-GHIVETGTHR 560 (578)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=381.34 Aligned_cols=215 Identities=23% Similarity=0.304 Sum_probs=178.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCE
Confidence 357999999999952 114589999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. +..++ +.++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 8643 346778999999999887 599999988531 12222 236677777777654 3455554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.+|++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 999999999986 345799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b5x_A 553 E-GEIIERGRHA 563 (582)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=380.99 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=179.2
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTE
T ss_pred CCcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCE
Confidence 356999999999851 114589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. ...++ +.++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccC
Confidence 8753 345678999999999887 599999988531 12222 236677887777643 3555665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||++++|+
T Consensus 477 ~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~ 552 (582)
T 3b60_A 477 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVE 552 (582)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999865 9999999999863 45799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b60_A 553 D-GIIVERGTHS 563 (582)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=388.79 Aligned_cols=213 Identities=25% Similarity=0.387 Sum_probs=174.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++||+|+|+. ++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCE
Confidence 457999999998841 23589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++. + ..+++ .++++++..++.+ -.++.+|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8754 346778999999998886 69999998752 1 11221 1345555555543 23444443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|++++|+
T Consensus 488 ~g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HH-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 32 4699999999999999999999999999999999999999999999985 59999999999973 4 5699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 564 ~-G~i~~~g~~~ 574 (598)
T 3qf4_B 564 D-GEIVEMGKHD 574 (598)
T ss_dssp S-SSEEECSCHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=397.92 Aligned_cols=217 Identities=28% Similarity=0.383 Sum_probs=184.6
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.++.++|+||+|+|+.+ .++++|+|+|+++++||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 412 ~~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG 479 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDG 479 (1321)
T ss_dssp CCCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETT
T ss_pred CCCcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCC
Confidence 34679999999999743 235689999999999999999999999999999999998874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g 687 (1140)
.+++. ..+|+.++||+|++.++. .|++||+.|+. +..++++ +.++++..++ .+-.||.+|
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITREE----MVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred ccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccchHHH----HHHHHHHccchhHHHcCCCCCccEec
Confidence 98764 457788999999999886 79999999862 2334332 4555555543 455788899
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|. .||||||||++||||+++||+||+||||||+||+++++.+.+.|+++. +|+|+|+++|+++ ..+.+|+|++|
T Consensus 550 e~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 550 DRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 8764 599999999999999999999999999999999999999999999876 4899999999987 46889999999
Q ss_pred ecCCEEEEECCCCc
Q 001146 768 KRGGQEIYVGPLGR 781 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~ 781 (1140)
++ |+++..|+.++
T Consensus 626 ~~-G~ive~Gth~e 638 (1321)
T 4f4c_A 626 KN-GQVVEVGDHRA 638 (1321)
T ss_dssp ET-TEEEEEECHHH
T ss_pred eC-CeeeccCCHHH
Confidence 85 89999999753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=393.45 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=177.5
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.++++||+|+|+.+ .+.++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 384 ~~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g 451 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDG 451 (1284)
T ss_dssp CCCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETT
T ss_pred CCCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC
Confidence 34679999999999632 124589999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------Cccccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g 687 (1140)
.++.. ..+|+.++||+|++.+++. ||+||+.++.. ..+.++ ++++++..+ +.+-.|+.+|
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 98754 3467789999999999875 99999998731 223332 233333333 2344577777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.++++. +|+|+|+++|+++ ....+|+|++|
T Consensus 522 ~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl 597 (1284)
T 3g5u_A 522 ERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGF 597 (1284)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEEC
T ss_pred CCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEE
Confidence 654 4699999999999999999999999999999999999999999998864 5999999999976 34569999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |++++.|+.+
T Consensus 598 ~~-G~i~~~g~~~ 609 (1284)
T 3g5u_A 598 DG-GVIVEQGNHD 609 (1284)
T ss_dssp SS-SCCCCEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.09 Aligned_cols=197 Identities=23% Similarity=0.356 Sum_probs=147.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|+++.+ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-- 99 (290)
T ss_dssp -----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--
T ss_pred ceEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--
Confidence 358889988742 247999999999999999999999999999999999877 5689999988
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 692 (1140)
.++|++|++.+++. ||+||+. +. . .... .+++.++.+++.+.. ++.++. ...
T Consensus 100 --------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (290)
T 2bbs_A 100 --------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGI 158 (290)
T ss_dssp --------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----C
T ss_pred --------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccC
Confidence 38999999988884 9999997 31 1 1111 123444555554322 222222 235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.+ +++. +|+|||++||+++ ....||++++|++ |
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G 234 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-G 234 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999874 4554 4899999999975 3456999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 235 ~i~~~g~~~ 243 (290)
T 2bbs_A 235 SSYFYGTFS 243 (290)
T ss_dssp EEEEEECHH
T ss_pred eEEEeCCHH
Confidence 999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=318.37 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=159.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+...|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+| |++ +|.+
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 4677788988873 3568999999999999999999999999999999995 111 3433
Q ss_pred cCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 001146 620 KKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgG 697 (1140)
... ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+|+. +..+..+ ..||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHH
Confidence 221 12368999874 67788999999975 111 11 34578899999994 5566654 469999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++ .|.|+|+++|++. .+.+.||++++|++ |+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCC
Confidence 99999999999999999999999999999999999999987 5899999999975 57789999999985 7886 78
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 628 G~~~ 631 (986)
T 2iw3_A 628 GNFT 631 (986)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9863
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=318.65 Aligned_cols=195 Identities=21% Similarity=0.266 Sum_probs=152.1
Q ss_pred EEE-EeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE-------
Q 001146 542 LTF-DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI------- 613 (1140)
Q Consensus 542 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i------- 613 (1140)
.++ +||+++|.. ...+|+|+| ++++||+++|+||||||||||+|+|+|...+. +|++
T Consensus 21 ~~~~~~ls~~yg~------------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~ 85 (538)
T 1yqt_A 21 EQLEEDCVHRYGV------------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGV 85 (538)
T ss_dssp ---CCCEEEECST------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHH
T ss_pred hhHhcCcEEEECC------------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhh
Confidence 344 478887731 123799999 99999999999999999999999999976542 4553
Q ss_pred --EEcCcccCc-----ccccceEEEeccCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 001146 614 --TISGYPKKQ-----ETFARISGYCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683 (1140)
Q Consensus 614 --~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 683 (1140)
.++|.+... ...+..+++++|+....+. .|+.|++.... .+++++++++.+|+.+..+
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~ 153 (538)
T 1yqt_A 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLE 153 (538)
T ss_dssp HHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTT
T ss_pred HHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhh
Confidence 345544321 0112357888887544332 38999875310 0123678999999988777
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 684 ~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..+ ..|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||+++|++. .+...||+
T Consensus 154 ~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dr 227 (538)
T 1yqt_A 154 REI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDI 227 (538)
T ss_dssp SBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 664 579999999999999999999999999999999999999999999999878999999999976 67788999
Q ss_pred EEEEec
Q 001146 764 LFLMKR 769 (1140)
Q Consensus 764 v~~l~~ 769 (1140)
+++|.+
T Consensus 228 i~vl~~ 233 (538)
T 1yqt_A 228 IHVVYG 233 (538)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=322.17 Aligned_cols=181 Identities=23% Similarity=0.249 Sum_probs=145.8
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE---------EEcCcccCcc-----cccceEEEec
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TISGYPKKQE-----TFARISGYCE 633 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 633 (1140)
.+|+|+| ++++||+++|+|||||||||||++|+|...+. +|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4799999 99999999999999999999999999976643 4654 3455543210 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 634 QNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 634 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
|.....+ ..||+|++... .. +++++++++.+||.+..+..+ .+|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~-----~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDREL-----HQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBG-----GGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 8643322 23999998631 10 123678999999998877764 5799999999999999999
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++ .+..++|++++|.+
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 99999999999999999999999999999877999999999976 56788999999973
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=319.38 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=134.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHH---------------------HHHhcCCcCc--eE---EEEEEEcCccc
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGNITISGYPK 620 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~~~g~~~ 620 (1140)
+.+|+||||+|++||+++|+||||||||||+ +++.|...++ .+ .+.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3479999999999999999999999999998 6676654432 11 35677777654
Q ss_pred CcccccceEEEeccCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCHHHHH------HHHHHHHHH
Q 001146 621 KQETFARISGYCEQNDI-------------------HSPFVTIYESLLFSAWLRLSPEVDSETRK------MFIDEVMEL 675 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 675 (1140)
.. ..++.+++++|... .++.+||+||+.+...+..... ..+..+ ....++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 32 12334455555432 2356899999987533221110 000000 011235788
Q ss_pred cCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 676 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 676 ~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
+||.+. .+..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++||+
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 45543 5699999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 753 PSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 753 ~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
++ ....||++++|. ++|++++.|++++
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999992 3589999998753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-29 Score=299.96 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=139.4
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCc---ccccce--EEE
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQ---ETFARI--SGY 631 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 631 (1140)
..|++++ .+++||+++|+||||||||||||+|+|...+. +|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577777 68999999999999999999999999987643 56652 22222110 000111 122
Q ss_pred eccCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH
Q 001146 632 CEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 705 (1140)
Q Consensus 632 v~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia 705 (1140)
.+|.... -+..++.+++.... ... +++++++++.+++.+..++.+ ..|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EKS----PEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CSC----HHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hhH----HHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 3332111 12235666554320 111 234788999999998888764 57999999999999
Q ss_pred HHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 706 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 706 ~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++..++|++++|. ||..+|
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999986 6888999999997 455444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=294.69 Aligned_cols=172 Identities=22% Similarity=0.215 Sum_probs=133.3
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE-----------EEcCcccCcc-----cccceEEEecc----C
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-----------TISGYPKKQE-----TFARISGYCEQ----N 635 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~q----~ 635 (1140)
..++||++||+||||||||||+|+|+|...+. +|++ .++|.++... .....+....| .
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 35699999999999999999999999987643 5776 4566544210 00112233333 3
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEe
Q 001146 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 715 (1140)
Q Consensus 636 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~il 715 (1140)
+.++ ..|++|++.... .+++++++++.+++.+..++.+ +.|||||||||+||+||+.+|++|
T Consensus 99 ~~~~-~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTC-CSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhc-cCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3222 248888664210 0123578899999998888764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 716 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 716 llDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+|||||++||+.++..+.+.|+++.+ |+|||+++|+++ ++...||++++|.+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG 212 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC
Confidence 99999999999999999999999976 999999999986 68889999999974
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-28 Score=283.92 Aligned_cols=197 Identities=14% Similarity=0.069 Sum_probs=149.2
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-E-EEEcCcccCcccccceEEEeccCCC---CCCCCCH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTI 644 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~lTv 644 (1140)
+.++|+++++|++++|+||||||||||+|+|+|...+ .+| + |.++|. .++.++|++|+.. +.+.+|+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3479999999999999999999999999999998763 478 8 999983 2466899999874 4456799
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH--HhhCCcE----eEEe
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMD 718 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a--l~~~p~i----lllD 718 (1140)
+||+ |+....... .. ++++.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 653321111 00 122456677788876654 24799999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC--H---HHHHhhce-----EEEEecCCEEEEECCCCcc----h
Q 001146 719 E-PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGRH----S 783 (1140)
Q Consensus 719 E-PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----v~~l~~gg~~~~~g~~~~~----~ 783 (1140)
| ||++||+. ...+.+.+++ .|+|+|+++|+.+ . .+.+++|+ +++|+++|+++ .|++++. .
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 5555555543 3789999999986 2 34578999 99998347788 8886532 1
Q ss_pred hHHHHHHhh
Q 001146 784 CHLISYFEA 792 (1140)
Q Consensus 784 ~~~~~~f~~ 792 (1140)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 235567754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=256.37 Aligned_cols=203 Identities=18% Similarity=0.148 Sum_probs=141.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC------------------------------------ceEEEE
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITGN 612 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~------------------------------------~~~~G~ 612 (1140)
+++++|+++++| +++|+|||||||||||++|++...+ ....|.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 589999999999 9999999999999999999653221 011578
Q ss_pred EEEcCcccCcc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHcc-----------------------CCCCC----C
Q 001146 613 ITISGYPKKQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR-----------------------LSPEV----D 661 (1140)
Q Consensus 613 i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-----------------------~~~~~----~ 661 (1140)
+.+||.+.... . .+..+++++|++.+.. .+..+...|.-... ..... .
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999987642 2 2234899999876654 24444433321110 00000 0
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC----
Q 001146 662 ------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGL---- 688 (1140)
Q Consensus 662 ------------------------------~~~~~~~~~~~l~~~~l~~~~----------------~~---~~g~---- 688 (1140)
.+.....+++.++.+++.+.. +. ....
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000112345556666654310 00 0110
Q ss_pred --CCCCc-CCHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 689 --PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 689 --~~~~~-LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.+|+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCe
Confidence 01122 6999999999999999999 9999999999999999999999999997 599999999996 46788999
Q ss_pred EEEE----ecCCEEEEEC
Q 001146 764 LFLM----KRGGQEIYVG 777 (1140)
Q Consensus 764 v~~l----~~gg~~~~~g 777 (1140)
+++| .+ |+++...
T Consensus 365 i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp EEEEEEEEET-TEEEEEE
T ss_pred EEEEEEeccC-CceEEEE
Confidence 9999 64 7776553
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-25 Score=235.94 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=98.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++.+|+|+ ++||+++|+||||||||||+++|+|. ++ .+|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445689996 89999999999999999999999998 53 2455421101111123456799999975
Q ss_pred HHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 645 YESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 645 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
+||+ .+.. .+.. ... ++.++++++. + + |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 3444 2210 1110 001 1124444443 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
||+| ++..+.+.|+++ ++|+||| +||+++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999888 6689999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=226.46 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.7
Q ss_pred CCcCCHHHHHHHHHHHHHh------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.++|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 47789999
Q ss_pred EEEecCCEEEE
Q 001146 765 FLMKRGGQEIY 775 (1140)
Q Consensus 765 ~~l~~gg~~~~ 775 (1140)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 78764
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=226.53 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=74.8
Q ss_pred CCcCCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE--
Q 001146 691 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v-- 764 (1140)
+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|+|+++|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 6889999999999999999999999999984 5899999999964 67889987
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888766666666553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=208.30 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC-CCCHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 650 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~ 650 (1140)
||||++++||+++|+||||||||||++++.+... . +++ .. ..++++|++.... ..++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1 111 11 1256666532110 0112222211
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH---
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 727 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~--- 727 (1140)
..... ...+.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 65 -----------------~~~~~-~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IVSKR-LQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHHH-HHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHHH-HhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11111 223443333322 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 728 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 728 -------------~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
....+.+.|++++++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889998888777999999999964
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-24 Score=246.60 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=135.5
Q ss_pred eeeeeCceEEEeCce--------------------EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCccccc
Q 001146 567 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 626 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~--------------------~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 626 (1140)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|...+. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e
Confidence 357999999999999 99999999999999999999987643 688888886543 1
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH--HHHHHHH
Q 001146 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 704 (1140)
Q Consensus 627 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG--qrqRv~i 704 (1140)
+ ++++|++ .++.+|+.|++.+.. . +..++++++.+++.+..... . |||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHH
Confidence 2 6888875 567889999875531 0 12357888888887653221 2 9999 9999999
Q ss_pred HHHHhh----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-----hC----CCEEEEEecCCCH-HHHHhhceE
Q 001146 705 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 764 (1140)
Q Consensus 705 a~al~~----------~p~illlDEPtsgLD~~~~~~v~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~d~v 764 (1140)
|++|+. +|++++|||||+|||+.++.++.+.++++. +. ..++++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 22 2678899998762 367778877
Q ss_pred E
Q 001146 765 F 765 (1140)
Q Consensus 765 ~ 765 (1140)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-21 Score=212.95 Aligned_cols=92 Identities=29% Similarity=0.381 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+...+|||||||||+|||||+++|+||+|||||||||+.++..|++.++++. .++|+|++| |+.+++..+|+|++|
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~it---H~l~~~~~aD~i~vl 261 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVA---HRLSTVVNADQILVI 261 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEEC---CSHHHHHTCSEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEE---cChHHHHcCCEEEEE
Confidence 3456799999999999999999999999999999999999999999998864 344455555 788889999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+++++
T Consensus 262 ~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 262 KDGCIVERGRHEALLS 277 (306)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-24 Score=228.80 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=117.4
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
...+++| .++++||+++|+||||||||||+|+|+|..+. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3557888 69999999999999999999999999997642 23333333332211 2245689999998777778887
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 646 ESLLFSAWLRL---SPEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 646 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
|++........ ......++.++++++. ++.+++.+..+.. .+.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 76532110000 0012233333444444 4444444444433 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 717 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 717 lDEPtsgL----D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||+|+ |+..+..+.+.++++.+ .|.|+|+++|+++ ++.+.+|++++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999874 5899999999986 68899999999965443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-21 Score=201.17 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 661 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 661 (1140)
.++|+||||||||||+++|+|...- ...|... .+......++.++|++|+. ++.+++ + +.+. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----FT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----CC
Confidence 5899999999999999999997531 2233211 1111012356789999975 222222 0 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH-----HhhCCcEeEEeC--CCCCCCHHHHHHHHH
Q 001146 662 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 734 (1140)
Q Consensus 662 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a-----l~~~p~illlDE--PtsgLD~~~~~~v~~ 734 (1140)
-.+..+.. ...||||||||++||++ |+.+|++++||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00112222 34699999999999996 999999999999 999999999998888
Q ss_pred HHHHHhhCCCEEEEEec--CCCHHHHHhhceEEEEecCCEEEEE
Q 001146 735 TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 735 ~l~~~~~~g~tvi~~~H--~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
.+++ .+.|+|+++| +....+..++|+ .+|+++..
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 8864 4778999997 223356677787 34666553
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-20 Score=206.77 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+....+|||||||||+|||||+.+|+||+|||||||||+.+...+++.|+++.++.|+||++..|. ...+.+.+|+|++
T Consensus 158 ~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 456788999999999999999999999999999999999999999999999876667787776553 3356678999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999986
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-20 Score=200.26 Aligned_cols=96 Identities=25% Similarity=0.307 Sum_probs=84.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.....|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.++.|+|||++.|... .+.+.+|+|++
T Consensus 138 ~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~ 216 (275)
T 3gfo_A 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFV 216 (275)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 44567899999999999999999999999999999999999999999999876345788887766544 56678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 217 l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 217 MKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EETTEEEEEECHHHHTH
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999999864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-20 Score=211.27 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=119.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCC-CC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 639 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~ 639 (1140)
++++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ +..++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997653 258999999876431 12 346899999988 88
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEE
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 717 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illl 717 (1140)
|.+|++|++.++.... .+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8999999998864211 10 13456677776655543 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
| ||+|||+... ++++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999854 23444 358999999994
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=195.75 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+....+|||||||||+|||||+.+|+||+|||||||||..++..+++.++++.+..++|||++.|.. +..+.+|+|++
T Consensus 140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--~~~~~~d~i~~ 217 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIY 217 (235)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--HHHTTSSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999998765588888776655 46789999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+.+++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 218 LKDGEVEREEKLRGFD 233 (235)
T ss_dssp EETTEEEEEEECC---
T ss_pred EECCEEEEEcChhhhc
Confidence 9999999999988753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-21 Score=212.17 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=96.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 661 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 661 (1140)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.||+.|+...... . .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H-H
Confidence 489999999999999999999766 34799999998875545567899999999999999999999887543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 662 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 662 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
.+ .+.+.++ .+..+... ..||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1223322 22333332 4699999999999999875 999999999999987 455566655
Q ss_pred CCCEEEEEecCC
Q 001146 742 TGRTVVCTIHQP 753 (1140)
Q Consensus 742 ~g~tvi~~~H~~ 753 (1140)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=193.78 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..++..+++.++++.++.++||+++.|. ...+.+.+|+|++
T Consensus 121 ~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~i~~ 199 (240)
T 2onk_A 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAV 199 (240)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998766557777776553 3457788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 200 l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 200 MLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998863
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=220.19 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=82.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. +++|++++| |+.++++.+|+|++|
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~l~~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIIT---QKIPTALLADKILVL 550 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEE---SCHHHHTTSSEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEe---cChHHHHhCCEEEEE
Confidence 4556799999999999999999999999999999999999999999998853 344555566 778889999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+|+++
T Consensus 551 ~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 551 HEGKVAGFGTHKELLE 566 (587)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-23 Score=227.12 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=123.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+|.|+ +.+|+|+|++|++|++++|+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 67778877663 23799999999999999999999999999999999976 3555
Q ss_pred cccccceEEEeccCCCCCCCCCHHH-HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++|++|++.+++ .|++| |+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 345677776665 47776 765521 1121 234455543 333333 2 469999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
| ||||+++|+||| ||+||+.++..+.. .+|+++ ..+.+|++ +|++ |++++.|+.+
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~~ 262 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITDA 262 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCHH
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCHH
Confidence 9 999999999999 99999999887752 188875 46789999 9985 8999999863
Q ss_pred cchhHHHHHHhhC
Q 001146 781 RHSCHLISYFEAI 793 (1140)
Q Consensus 781 ~~~~~~~~~f~~~ 793 (1140)
++..+|..+
T Consensus 263 ----el~~~y~~l 271 (305)
T 2v9p_A 263 ----DWKSFFVRL 271 (305)
T ss_dssp ----HHHHHHHHS
T ss_pred ----HHHHHHHHH
Confidence 345566554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=202.07 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.++++.++.++|+|+..| ...++.+++|+|+|
T Consensus 133 ~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~v 211 (359)
T 3fvq_A 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAV 211 (359)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEE
Confidence 45678999999999999999999999999999999999999999999888877667888877655 55578899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 212 l~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 212 MKQGRILQTASPHELYR 228 (359)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=196.44 Aligned_cols=95 Identities=27% Similarity=0.313 Sum_probs=82.7
Q ss_pred CCccccCccchhhhhHHHHHhhc------CceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 77 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~------~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~ 77 (1140)
+...+.|||||||||+|||||+. +|+||+|||||||||..++..+++.++++.+.+++||+++.| ....+.+.
T Consensus 136 ~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH-dl~~~~~~ 214 (266)
T 4g1u_C 136 QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH-DLNLAALY 214 (266)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS-CHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc-CHHHHHHh
Confidence 34567899999999999999999 999999999999999999999999999877655667666544 44456678
Q ss_pred ccceEEecCCeEEEecCcchHH
Q 001146 78 FDDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 78 fD~I~vL~~G~vvy~G~~~el~ 99 (1140)
+|+|++|++|+++++|+++++.
T Consensus 215 ~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 215 ADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CSEEEEEETTEEEEEECHHHHC
T ss_pred CCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=213.89 Aligned_cols=107 Identities=24% Similarity=0.385 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q 001146 667 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743 (1140)
Q Consensus 667 ~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g 743 (1140)
++++ .++.+||.+. .+.. ...|||||||||+||++|..+| ++|+|||||+|||+.....+.+.|+++.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~-----~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRS-----TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCB-----GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCC-----cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778898764 4554 3579999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 744 RTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 744 ~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
.|||+++|++. +.+.+|+|++|. +||++++.|++++
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 99999999974 667899999994 4799999999865
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-19 Score=194.84 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=82.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+.+|+|++
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MGFARHVSSHVIF 225 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 7777776553 3355678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 226 l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 226 LHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999988863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-23 Score=219.21 Aligned_cols=176 Identities=9% Similarity=-0.028 Sum_probs=108.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCCCCCCCCCH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~lTv 644 (1140)
-|+||||++++|++++|+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 499999999999999999999999999999999976 3 66777 6554221 234567899998665543321
Q ss_pred -HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHH-----HHHHhhCCcEeEE
Q 001146 645 -YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 717 (1140)
Q Consensus 645 -~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~i-----a~al~~~p~illl 717 (1140)
.+++.+. ..... ..... ..++++++...+. ..+ ..||||||||++| +++|+.+|++++|
T Consensus 86 ~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 86 NEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred ccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1111100 00000 01111 2356666654321 111 3599999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhh-------CCCEEEEEecCCCHHHHHhhceEE
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
||||+++|..+...+.+.|+++.+ .+.+.|+++|++. +.++..|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 999999999999999998877643 2345555555543 4444444443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=193.66 Aligned_cols=95 Identities=19% Similarity=0.304 Sum_probs=83.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.....||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+.+|+|++
T Consensus 154 ~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~ 231 (263)
T 2olj_A 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLF 231 (263)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 7788877554 3456678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 232 l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 232 MDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-19 Score=193.06 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=83.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+++.++++++ .++|||++.|... .+.+.+|+|++
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998765 4788888766544 66788999999
Q ss_pred ecCCeEEEecCcchH
Q 001146 84 LSDGQIVYQGPRELV 98 (1140)
Q Consensus 84 L~~G~vvy~G~~~el 98 (1140)
|++|++++.|+++++
T Consensus 226 l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 226 MFNGQIIAEGRGEEE 240 (257)
T ss_dssp EETTEEEEEEESHHH
T ss_pred EECCEEEEEeCHHHh
Confidence 999999999999983
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-19 Score=194.78 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=82.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.....|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++.++.++|||++.|. .+....+|+|++|
T Consensus 152 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd--~~~~~~~d~v~~l 229 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFL 229 (271)
T ss_dssp GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC--HHHHTTCSEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC--HHHHHhCCEEEEE
Confidence 44678999999999999999999999999999999999999999999998654457777776554 4556679999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 230 ~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 230 KEGSVCEQGTHLQLME 245 (271)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-19 Score=201.25 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=86.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||+.+..++.+.++++.++.|+|+|+..| ...++.+++|+|+|
T Consensus 128 ~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~v 206 (381)
T 3rlf_A 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVV 206 (381)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEE
T ss_pred cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999999987666788777655 45578899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 207 LDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-20 Score=207.93 Aligned_cols=130 Identities=18% Similarity=0.140 Sum_probs=103.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+++++|+.+++|++++|+||||||||||+++|+|..++. +|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe--------------
Confidence 689999999999999999999999999999999987653 7999999864211 01122222221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 728 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356677776543458999999986 57889999999874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-19 Score=192.15 Aligned_cols=90 Identities=28% Similarity=0.412 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||+.++..+++.++++ . .++|||++.|.+ +..+.+|+|++|+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~--~~~~~~d~v~~l~ 217 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRL--STVKNADRIIVME 217 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSG--GGGTTSSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCH--HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999986 3 477887776654 4456799999999
Q ss_pred CCeEEEecCcchHH
Q 001146 86 DGQIVYQGPRELVL 99 (1140)
Q Consensus 86 ~G~vvy~G~~~el~ 99 (1140)
+|++++.|+++++.
T Consensus 218 ~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 218 KGKIVEQGKHKELL 231 (247)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999999886
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-19 Score=191.36 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=82.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+ .++|||++.|.+ ..+.+.+|+|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~ 211 (240)
T 1ji0_A 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYV 211 (240)
T ss_dssp TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEE
Confidence 445678999999999999999999999999999999999999999999998765 566777665533 367789999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 212 l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999998875
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-20 Score=209.82 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=120.3
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCC-CCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 640 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~ 640 (1140)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ +..++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997653 258999999876421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEe
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 718 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlD 718 (1140)
.+|++|++.++.... .+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 999999998864211 10 13456677776655543 4699 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 719 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
||+|||+.... +++. +.|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988652 3343 348999999994
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=196.23 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHHh---------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 693 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.||||||||++||++|+ .+|+||||||||++||+..+..+.+.++++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 699999994 4 2 7899
Q ss_pred EEEEecCCEEEEECCCCc
Q 001146 764 LFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~~~ 781 (1140)
+++|++ |+++..|++++
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 89999998753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-19 Score=187.75 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=79.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.+. ++||+++.|.. +..+.+|+|++
T Consensus 135 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~--~~~~~~d~v~~ 211 (224)
T 2pcj_A 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER--ELAELTHRTLE 211 (224)
T ss_dssp TCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH--HHHTTSSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH--HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 78888877764 34489999999
Q ss_pred ecCCeEEEecCc
Q 001146 84 LSDGQIVYQGPR 95 (1140)
Q Consensus 84 L~~G~vvy~G~~ 95 (1140)
|++|+++++|+.
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-19 Score=217.40 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=80.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.++..+.+.++++. +++|++++| |+.++++.+|+|++|
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~l~~~~~~d~i~~l 548 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVA---HRLSTITHADKIVVI 548 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEEC---SSGGGTTTCSEEEEE
T ss_pred cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cCHHHHHcCCEEEEE
Confidence 3456799999999999999999999999999999999999999999998754 344444444 667788999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+|+++
T Consensus 549 ~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 549 ENGHIVETGTHRELIA 564 (578)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-19 Score=218.74 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=79.6
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||||||+|||||+++|+||+|||||||||+.++..+++.++++. + ++|+|+.. |+.++++.+|+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~it--H~l~~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIA--HRLNTIKNADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEES--CCTTHHHHCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEe--cCHHHHHcCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999998864 3 55555543 55667888999999999
Q ss_pred CeEEEecCcchHHH
Q 001146 87 GQIVYQGPRELVLE 100 (1140)
Q Consensus 87 G~vvy~G~~~el~~ 100 (1140)
|+++++|+|+|+++
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999985
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-19 Score=215.36 Aligned_cols=91 Identities=26% Similarity=0.399 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. ++.|++++| |+.++++.+|+|++|+
T Consensus 477 ~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~~~~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIA---HRLSTIEQADEILVVD 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cCHHHHHhCCEEEEEE
Confidence 456799999999999999999999999999999999999999999998864 333444455 6677888999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 553 EGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999974
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=197.49 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| -..++.+++|+|++
T Consensus 140 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 218 (355)
T 1z47_A 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQEEALEVADRVLV 218 (355)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877666788887655 44577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 219 l~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 219 LHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=197.78 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=85.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.++.++|+|++.| ...+..+++|+|++
T Consensus 128 ~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~~~~~adri~v 206 (359)
T 2yyz_A 128 DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH-DQAEAMTMASRIAV 206 (359)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC-CHHHHHHhCCEEEE
Confidence 45567899999999999999999999999999999999999999999999877666778777656 34567889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 207 FNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-19 Score=215.79 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. + ++|+|+.. |+.++++.+|+|++|+
T Consensus 477 ~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~it--H~~~~~~~~d~i~~l~ 552 (582)
T 3b60_A 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIA--HRLSTIEQADEIVVVE 552 (582)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEEC--SCGGGTTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEe--ccHHHHHhCCEEEEEE
Confidence 457799999999999999999999999999999999999999999999864 3 55555543 5566788999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 553 DGIIVERGTHSELLA 567 (582)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999975
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=197.12 Aligned_cols=95 Identities=24% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...++.+++|+|++
T Consensus 122 ~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~~~~~~adri~v 200 (348)
T 3d31_A 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAV 200 (348)
T ss_dssp TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45677899999999999999999999999999999999999999999999887666778777655 34578899999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 201 l~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 201 VMDGKLIQVGKPEEIF 216 (348)
T ss_dssp ESSSCEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999999885
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=193.26 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrq------Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67788888889999999999999999999999999999877789999999995 467899999
Q ss_pred EEEec
Q 001146 765 FLMKR 769 (1140)
Q Consensus 765 ~~l~~ 769 (1140)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=198.48 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=85.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.++.++|+|++.| ...++.+++|+|++
T Consensus 128 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 206 (362)
T 2it1_A 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH-DQAEALAMADRIAV 206 (362)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877665778777655 34577899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 207 IREGEILQVGTPDEVYY 223 (362)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=197.92 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...++.+++|+|++
T Consensus 135 ~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~~~~~adri~v 213 (353)
T 1oxx_K 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH-DPADIFAIADRVGV 213 (353)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45577899999999999999999999999999999999999999999999877666778877666 34577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 214 l~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 214 LVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=190.86 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=84.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|.+. .+.+.+|++++
T Consensus 133 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~ 210 (266)
T 2yz2_A 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVV 210 (266)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 788888766554 55677999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 211 l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 211 LEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EETTEEEEEEEHHHHHH
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999998875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-19 Score=191.45 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+.+|+||+|||||||||..++..+++.++++. . ++|||++.|.+. ..+.+|+|++|+
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~--~~~~~d~i~~l~ 227 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS--TISSAESIILLN 227 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG--GSTTCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH--HHHhCCEEEEEE
Confidence 457899999999999999999999999999999999999999999998864 3 678877766654 446799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 228 ~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 228 KGKIVEKGTHKDLLK 242 (260)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=197.54 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++.++|+|++.| ...+..+++|+|++
T Consensus 136 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 214 (372)
T 1v43_A 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAV 214 (372)
T ss_dssp TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 44567899999999999999999999999999999999999999999999877665778777655 44577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 215 l~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 215 MNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=197.88 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...+..+++|+|++
T Consensus 134 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 212 (372)
T 1g29_1 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAV 212 (372)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEE
Confidence 44677899999999999999999999999999999999999999999999877666778777666 34577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=189.14 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=81.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+..++|||++.|.+ ..+.+.+|++++
T Consensus 123 ~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~ 201 (253)
T 2nq2_C 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLL 201 (253)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654477877765543 356688999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+ +++|+++++.
T Consensus 202 l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 202 LNKQN-FKFGETRNIL 216 (253)
T ss_dssp EETTE-EEEEEHHHHC
T ss_pred EeCCe-EecCCHHHHh
Confidence 99999 9999988764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-20 Score=216.17 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=136.9
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc---ccCc--------ccccceEEEeccC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 635 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~ 635 (1140)
..+|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.++|+ +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 999999999999999999999999999987644 799999998 3322 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 636 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 636 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+..++.+|+.+|+.+.+...... . +++ ....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 55677889999998765321000 0 000 111122 24599999 999999 889988
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhh---C-CC-----EEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 467899999985 899998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=192.22 Aligned_cols=94 Identities=29% Similarity=0.351 Sum_probs=81.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEE--EEEecCCChhHHhhccce
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~ti--iitIhQp~~~t~~~fD~I 81 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+++.|+++.++ ++|| |++.|.. ..+.+.+|+|
T Consensus 156 ~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 3456789999999999999999999999999999999999999999999987655 6666 6555543 3556889999
Q ss_pred EEecCCeEEEecCcchHH
Q 001146 82 ILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~ 99 (1140)
++|++|++++.|+++++.
T Consensus 234 ~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEETTEEEEEEEHHHHC
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=187.09 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=82.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+++.|+++.+ .++|||++.|.+ ..+.+.+|++++|
T Consensus 142 ~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l 219 (256)
T 1vpl_A 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALI 219 (256)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998764 577777766543 3455679999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++.+
T Consensus 220 ~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 220 HNGTIVETGTVEELKE 235 (256)
T ss_dssp ETTEEEEEEEHHHHHH
T ss_pred ECCEEEEecCHHHHHH
Confidence 9999999999998865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-19 Score=190.29 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||..++..+++.++++. .++|||++.|. .+..+.+|+|++|+
T Consensus 136 ~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~--~~~~~~~d~v~~l~ 211 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHR--LSTIVDADKIYFIE 211 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCS--HHHHHHCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCC--hHHHHhCCEEEEEE
Confidence 356899999999999999999999999999999999999999999999865 47787777665 44557799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 212 ~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 212 KGQITGSGKHNELVA 226 (243)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-18 Score=187.27 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=80.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHH---HHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~---~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
.....|||||||||+|||||+.+|+||+|||||||||..++..+++.++ +. . .++|||++.|.+.. .+.+|+|
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~--~~~~d~v 198 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSY--LPQVDVI 198 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTT--GGGSSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHH--HHhCCEE
Confidence 4567899999999999999999999999999999999999999999884 32 2 47788888777653 4679999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++++.|+++++..
T Consensus 199 ~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 199 IVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEeCCEEEEeCCHHHHhh
Confidence 9999999999999998864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=186.15 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=81.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCce-------EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHh
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 76 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~-------ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~ 76 (1140)
+...+.||||||||++|||||+.+|+ ||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+
T Consensus 121 ~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~ 198 (249)
T 2qi9_C 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLR 198 (249)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHH
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHH
Confidence 34567899999999999999999999 99999999999999999999999987654 7777776553 335558
Q ss_pred hccceEEecCCeEEEecCcchHH
Q 001146 77 LFDDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 77 ~fD~I~vL~~G~vvy~G~~~el~ 99 (1140)
.+|++++|++|++++.|+++++.
T Consensus 199 ~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 199 HAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HCSEEEEEETTEEEEEEEHHHHS
T ss_pred hCCEEEEEECCEEEEeCCHHHHh
Confidence 89999999999999999988774
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-18 Score=186.61 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=82.6
Q ss_pred Cccc-cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceE
Q 001146 5 EMIR-GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 82 (1140)
Q Consensus 5 ~~~r-gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~ 82 (1140)
.... +|||||||||+|||||+.+|+||+|||||||||..+...+++.++++. +.++|||++.|.+. .+-.. +|+|+
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~~-~~~~~~~d~v~ 236 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQR-ILDYIKPDYVH 236 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSGG-GGGTSCCSEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCHH-HHHhhcCCEEE
Confidence 3444 499999999999999999999999999999999999999999998865 35788888766543 33344 89999
Q ss_pred EecCCeEEEecCcchHHHHHHhCCC
Q 001146 83 LLSDGQIVYQGPRELVLEFFASMGF 107 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~~F~~~G~ 107 (1140)
+|++|++++.|+++++.. ....||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999998753 344444
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-19 Score=196.62 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=116.3
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .+.+.+.+......++.+..+.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34699999999999999999999999999999999964321 24 45443333322222222222222211 2223
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH-HHHHHHHHHHhhCCcEeEEeCCCC--
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 722 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq-rqRv~ia~al~~~p~illlDEPts-- 722 (1140)
+++.... + +.++.++.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 3443221 1 1122223344444432321 1111 13488898 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHhhC-CCEEEEEecCCC-H--------------------HHHHhhceEEEEecC
Q 001146 723 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 723 -g---LD~-~~~~~v~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~v~~l~~g 770 (1140)
+ +|. .....+.+.|++++++ |+|||+++|+.. . .+.+.+|+|++|++|
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 455 6667899999998765 999999999962 2 467889999999874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-18 Score=183.94 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=77.0
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHH-HHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L-~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
.+.||||||||++|||||+++|+||+|||||||||..++..+++.+ ++.. .++|||++.|++ +..+.+|++++|+
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~--~~~~~~d~v~~l~ 203 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILH 203 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHCSEEEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999999999999999998874 4432 367887776654 4456799999999
Q ss_pred CCeEEEecCcchHH
Q 001146 86 DGQIVYQGPRELVL 99 (1140)
Q Consensus 86 ~G~vvy~G~~~el~ 99 (1140)
+|++++.|+++++.
T Consensus 204 ~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 204 EGSSYFYGTFSELQ 217 (229)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999999886
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-18 Score=186.10 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=74.4
Q ss_pred Ccccc-CccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceE
Q 001146 5 EMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 82 (1140)
Q Consensus 5 ~~~rg-LSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~ 82 (1140)
..... ||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.+ .++|||++.|.+. .+... +|+|+
T Consensus 138 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~~d~v~ 215 (250)
T 2d2e_A 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQR-ILNYIQPDKVH 215 (250)
T ss_dssp SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSG-GGGTSCCSEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCCEEE
Confidence 34556 999999999999999999999999999999999999999999998653 5778888777543 44445 59999
Q ss_pred EecCCeEEEecCcch
Q 001146 83 LLSDGQIVYQGPREL 97 (1140)
Q Consensus 83 vL~~G~vvy~G~~~e 97 (1140)
+|++|++++.|+++.
T Consensus 216 ~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 216 VMMDGRVVATGGPEL 230 (250)
T ss_dssp EEETTEEEEEESHHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999999873
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-18 Score=196.33 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=78.1
Q ss_pred ccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 8 rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
+.|||||||||+|||||+.+|+||+|||||||||+.+..++.+.+++.. .++|+|++.|+ .+....+|+|++|++|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd--~e~~~~aDri~vl~~G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEAR--IEAMLECDQFLVIEEN 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSS--SGGGTTCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcC--HHHHHhCCEEEEEECC
Confidence 4499999999999999999999999999999999999999999998742 45666665454 4677889999999999
Q ss_pred eEEEecCcchHHH
Q 001146 88 QIVYQGPRELVLE 100 (1140)
Q Consensus 88 ~vvy~G~~~el~~ 100 (1140)
++++.|+++++..
T Consensus 230 ~i~~~g~~~el~~ 242 (390)
T 3gd7_A 230 KVRQYDSILELYH 242 (390)
T ss_dssp EEEEESSHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-18 Score=184.04 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=79.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc-ceEE
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIIL 83 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD-~I~v 83 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.|+++. . |+|++.|.+ ..+.+.+| ++++
T Consensus 124 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~ 198 (263)
T 2pjz_A 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYF 198 (263)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEE
Confidence 4567899999999999999999999999999999999999999999998743 2 666665543 45668899 9999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++.+
T Consensus 199 l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 199 LVGNRLQGPISVSELLE 215 (263)
T ss_dssp EETTEEEEEEEHHHHHT
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999998863
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=208.36 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=119.6
Q ss_pred HHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC-C-HH---HHHHHH
Q 001146 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV-D-SE---TRKMFI 669 (1140)
Q Consensus 595 TLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~~---~~~~~~ 669 (1140)
|+..|..++..+ ..++|.++|+++.. +..+|+.|++.|...+...... . .. ...+..
T Consensus 383 ~C~~C~g~rl~~--~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNR--EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCT--TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCCh--HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 344444445543 25788898877532 2347888888876544332111 1 00 111223
Q ss_pred HHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEE
Q 001146 670 DEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746 (1140)
Q Consensus 670 ~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv 746 (1140)
.+.++.+||... .+.. ...|||||||||+||++|+++|+ +|+|||||+|||+.....+++.|+++.++|.||
T Consensus 445 ~~~L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 467778898754 3544 35799999999999999999887 999999999999999999999999998889999
Q ss_pred EEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 747 VCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 747 i~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
|+++|++. ....+|++++|. ++|++++.|++++
T Consensus 520 ivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 520 IVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999964 556799999992 4799999999753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=183.96 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=76.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHH-HHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L-~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
.+.||||||||++|||||+.+|+||+|||||||||..++..+.+.+ ++.. .++|||++.|.+ +..+.+|+|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~--~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILH 232 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHSSEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH--HHHHcCCEEEEEE
Confidence 4689999999999999999999999999999999999999998864 3332 367877776654 4557799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 233 ~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN 247 (290)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCeEEEeCCHHHHhh
Confidence 999999999998863
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-19 Score=199.10 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=107.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 656 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 656 (1140)
+++|+++||+||||||||||+++|+|...+. +|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999976531 121 357999999999887 99999854211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH
Q 001146 657 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736 (1140)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l 736 (1140)
+.......+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111112234667788777 44433332 4699999999999999999999999999999998621 011
Q ss_pred HHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 737 ~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 1111 2 345555654333334455555554
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-17 Score=159.04 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCcCCHHHHHHHHHH------HHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia------~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999876 899999999999999999999999999999999877799999999997 467889999
Q ss_pred EEEe
Q 001146 765 FLMK 768 (1140)
Q Consensus 765 ~~l~ 768 (1140)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=196.37 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 640 PFVTIYESLLFSAWLRLSPE---VDS---ETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
..+||.|++.|...+.++.. ... ++..+++ +.++.+||... .++.+ ..|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35899999999776654321 000 1223344 35788999764 45543 579999999999999999985
Q ss_pred --cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 713 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 713 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
++|+|||||+|||+.....+.+.|+++.+.|.|||+++|++. ..+.+|+|++|. +||++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 999999999999999999999999999888999999999974 457899999993 4799999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-17 Score=196.18 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=116.0
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 653 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 653 (1140)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 5599999999999999999999999999864321 11 23456666531 12223221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH-----H
Q 001146 654 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 728 (1140)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~-----~ 728 (1140)
+. ..+. ++ +...|+.+..+.. ...|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555544443 3569999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCC---------HHHHHhhceEEEEecCCE
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~~gg~ 772 (1140)
+..+.+.++.+++.|.|+|+++|+.. ..+..++|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999998888999999999971 246678999999986 44
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-17 Score=214.06 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=117.5
Q ss_pred EEEEEe-----EEEEEecCchhhhcccccCceeeeeCceEEEeC-------ceEEEEeCCCCCChHHHHHHHhcCCcCce
Q 001146 541 SLTFDE-----VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGY 608 (1140)
Q Consensus 541 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------G~~~al~G~sGaGKSTLl~~l~g~~~~~~ 608 (1140)
.++++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |....
T Consensus 750 ~l~i~~~rHP~l~~~~~------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CEEEEEECCCC------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred eEEEEeccccEEEEEec------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 488888 766552 224589999999987 999999999999999999999 86531
Q ss_pred EEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 609 ITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 609 ~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.++..+||||+.. .+||.|++.. .+|+.+..+.
T Consensus 815 ----------------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~---- 847 (1022)
T 2o8b_B 815 ----------------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS---- 847 (1022)
T ss_dssp ----------------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC-----------
T ss_pred ----------------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh----
Confidence 1222238998752 4555554410 1122111111
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA-AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~-~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
+...+|++++ ++++|++++++|+++||||||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.+
T Consensus 848 -~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v 924 (1022)
T 2o8b_B 848 -GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAV 924 (1022)
T ss_dssp ---CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSE
T ss_pred -chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCccee
Confidence 1234777766 49999999999999999999999999874 5578888888776 999999999975 35567899988
Q ss_pred EecCCEEE--EECCC
Q 001146 767 MKRGGQEI--YVGPL 779 (1140)
Q Consensus 767 l~~gg~~~--~~g~~ 779 (1140)
+. |++. +.|++
T Consensus 925 ~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 RL--GHMACMVENEC 937 (1022)
T ss_dssp EE--EEEEEC-----
T ss_pred ec--CeEEEEEecCc
Confidence 74 6777 45553
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=202.06 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=109.2
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHH--------hcCCcCceEEEEEEEcCcccCcccccceEEEeccCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGYPKKQETFARISGYCEQND 636 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 636 (1140)
+++.+++|+++.+++|++++|+||||||||||||++ .|...+. .+.. ++.+ +
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~~---------------~~~~---d 706 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESAE---------------VSIV---D 706 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEEE---------------EECC---S
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--cccc---------------chHH---H
Confidence 345789999999999999999999999999999999 3422211 1100 1100 0
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcE
Q 001146 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSI 714 (1140)
Q Consensus 637 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~i 714 (1140)
+++..+|+.+ .. .+++|+|++++..+|++| +.+|++
T Consensus 707 ----------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 707 ----------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp ----------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred ----------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0111122211 11 135888888888888888 999999
Q ss_pred eEEeCCCCCCCHHHHHHH-HHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 715 IFMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+||||||+|||+.....+ ...++.+.+ .|.|+|++||+. ++.+++|++..+.+ |++...++.+
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 999999999999988887 666777765 499999999995 56789999999986 7999887764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-18 Score=188.21 Aligned_cols=156 Identities=9% Similarity=-0.001 Sum_probs=98.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567899999999999999999999999999999999854 112222 2356789999985 6678999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
.|++.+......... ......+.+.+.++.+ .+..+.. ...+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999877543221110 0110112233444433 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 725 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2222 378999999963
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-19 Score=216.43 Aligned_cols=168 Identities=20% Similarity=0.144 Sum_probs=114.6
Q ss_pred ceeeeeCceE-EEeCceEEEEeCCCCCChHHHHHH--HhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCC
Q 001146 566 KLVLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 566 ~~~iL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 640 (1140)
+.++|+|+|+ .+++||+++|+||||||||||+++ ++|...++ +|.|.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3457999999 999999999999999999999999 67876533 6899999987422 123355788888643211
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+ +.+ ..... .. ...++++.+++.+..+... +.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1 100 00000 00 0011122222222222221 234444 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH--------HHHhhceEEEEec
Q 001146 721 TS-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 769 (1140)
Q Consensus 721 ts-----gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~--------~~~~~d~v~~l~~ 769 (1140)
|+ +||+..++.+.+.++++++.|+|||+++|+++.. ...++|+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999998732 3455999999986
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-17 Score=177.64 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=96.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
+|+|+| +++|++++|+||||||||||+++|+|..++. .+|+|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~~--------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKSI--------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSSE---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCccee---------
Confidence 689999 8999999999999999999999999976521 1689999887653 222221000
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
. .. +.+++.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0122211 123 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
...+ ++. ++.|.+|++++|+.+ ..+.+||++.|..
T Consensus 113 ~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 333 356999999999976 5788999988863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-17 Score=188.93 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=122.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc----------ccccceEEEeccCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----------ETFARISGYCEQND 636 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~q~~ 636 (1140)
..+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.+.+.|++..+ ..+++.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4579999 999999999999999999999999999987654 6899998865211 12345577777753
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 637 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
. ...+.+.-... ...+.+.....+ .+.... . ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~-l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM-M--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE-E--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH-H--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 22222211100 000111111111 010000 0 1134699999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhh--CCC-----EEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.....+.+.++++.+ .|. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 467899999985 899998764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-16 Score=198.21 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=98.9
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.|++|+|+++++|++++|+||||||||||||++++...... .|...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 4678999999999999999999999999999999976311000 01001000 0011111 1111111111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHhh-CCCEEEEEecCCCHHHHHhhceE
Q 001146 726 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 726 ~~~~~~v~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+.....+. ..++.+.+ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99998887 67777764 5999999999964 55667764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-17 Score=173.49 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=93.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcC--CcCc---eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~--~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+.+++||+++|+||||||||||+++|+|. .+++ ...+.+.+++.+... .+.++++.|...+.+. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHI- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcE-
Confidence 57999999999999999999999999993 3211 113466666543210 0112222332222111 222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH-HHHHHHHHHHHhh-------CCcEeEEeCCC
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 721 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG-qrqRv~ia~al~~-------~p~illlDEPt 721 (1140)
.+. ...+++ +++++..+++++. +|+++++||||
T Consensus 95 ---------------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 ---------------------------YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ---------------------------EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ---------------------------EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 110 113333 3344666666666 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHhh-CCCEEEEEecCCCH---HHHHhhceEEEEecC
Q 001146 722 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 770 (1140)
Q Consensus 722 sgLD~~-------~-----~~~v~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~v~~l~~g 770 (1140)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|+++.|+++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777764 49999999995431 266789999999863
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-17 Score=185.40 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=85.5
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC-CcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++.+++|++++| +|+||||||||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 456899999998 99999999999999999996 44 3467 77777665332223457899998888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC-C
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-G 723 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts-g 723 (1140)
.|+..++..... .+..+..++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998877543210 0100111122111 12222 2569999999999988875 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHhhC-CCEEEEEecCCC
Q 001146 724 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 754 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~ 754 (1140)
||+... +.++++.++ +.++|++.||+.
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556665543 789999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-16 Score=178.21 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=103.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+|++++|+||||||||||+++|+|...+. .|+|.++|.+.... .+ ++.+++++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999999976543 68999999876321 11 345899999998889999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
++.... .+ ..+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653210 00 01223333332221 12456669999999999999994333 3444444
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCC
Q 001146 730 AIVMRTVRNTVDT-GRTVVCTIHQPS 754 (1140)
Q Consensus 730 ~~v~~~l~~~~~~-g~tvi~~~H~~~ 754 (1140)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4555666666543 899999999743
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=149.95 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=69.2
Q ss_pred CccccCccchhhhhHHH------HHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 5 EMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIA------raLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
...+.||||||||++|| |+|+.+|++|+|||||+|||..+...+.+.++++.. .++||+++-|.+ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 45678999999999876 899999999999999999999999999999988654 467888777765 577899
Q ss_pred cceEEe--cCCe
Q 001146 79 DDIILL--SDGQ 88 (1140)
Q Consensus 79 D~I~vL--~~G~ 88 (1140)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-18 Score=181.22 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=110.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCC--CCCCHHHHHHHHHHc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 654 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~ 654 (1140)
.++|++++|+||||||||||+++|+|...+ .++|++|++.++ +.+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999988776 5679988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH----HHHHHHHHHHhhCCcEeEEeCCCCC-------
Q 001146 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 723 (1140)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq----rqRv~ia~al~~~p~illlDEPtsg------- 723 (1140)
..+.... .+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 23356677777776554432 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-hhCCCEEEEEecCC
Q 001146 724 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 753 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~ 753 (1140)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-16 Score=193.10 Aligned_cols=133 Identities=20% Similarity=0.140 Sum_probs=97.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+ ... .+..+++++| +++.+++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~--~G~~------vpa--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ--VGSF------VPA--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT--TTCC------BSS--SEEEECCCSE---EEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc--cCce------eeh--hccceeeHHH---hhccCCH
Confidence 45789999999 99999999999999999999999532 11 1221 111 1234667665 3444555
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcEeEEeCC--
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP-- 720 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP-- 720 (1140)
.|++. .++|+|+++++.+++++ +.+|+++|||||
T Consensus 629 ~d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 629 SDDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp ------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred HHHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 44431 24799999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 721 -TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 721 -tsgLD~~~~-~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+++
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999999875 578887765 589999999985 344444
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-15 Score=190.81 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=106.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++|+|++ ++|++++|+||||||||||||+|+|...... .|..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 9999999999999999999999998521100 12111111 123455544 44555555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
|++... .+.+|++++ +++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 544211 113566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 726 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 726 ~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+.....+ ...++.+.+ .|.++|++||+++ +.+++|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9877665 678888877 4999999999974 4578898877765 67666543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-15 Score=160.33 Aligned_cols=83 Identities=14% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+++.++++.+ .++||+++.|.+. .+.+.+|+|++
T Consensus 128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~v~~ 205 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREEL-SYCDVNENLHK 205 (214)
T ss_dssp TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSCC-TTSSEEEEGGG
T ss_pred CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 4678888777655 55566677665
Q ss_pred ecCCeE
Q 001146 84 LSDGQI 89 (1140)
Q Consensus 84 L~~G~v 89 (1140)
+ .|++
T Consensus 206 ~-~~~~ 210 (214)
T 1sgw_A 206 Y-STKI 210 (214)
T ss_dssp G-BC--
T ss_pred e-CCcc
Confidence 4 4443
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-15 Score=170.28 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=72.0
Q ss_pred ccccCccchhhhhHHHHHhh------cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 6 MIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv------~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
....||||||||++||+||+ .+|+||+|||||+|||+.+...+++.++++.. .|.||+++.|. .+..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~--~~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHD--REFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESC--HHHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecc--hHHHHhCC
Confidence 45689999999999999999 79999999999999999999999999998764 56777766554 45588999
Q ss_pred ceEEecCCeEEE
Q 001146 80 DIILLSDGQIVY 91 (1140)
Q Consensus 80 ~I~vL~~G~vvy 91 (1140)
++++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999975
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-16 Score=179.37 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=98.6
Q ss_pred eeCc-eEEEeCceEEEEeCCCCCChHHHHHHHhcCC--cCc--eEEEE-EEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 570 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 570 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~--~~~--~~~G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
|+++ ++.+++|++++|+||||||||||++.|++.. ++. ...|. +++++.+.. .++++++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5555 6899999999999999999999999999954 211 11256 788776431 12233444444322221 2
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh-------hCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-------~~p~ill 716 (1140)
+.||+.+ .. . .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~----------------------------~~---~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYV----------------------------AR---A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEE----------------------------EE---C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEE----------------------------Ee---c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 2222211 00 0 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 717 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 717 lDEPtsgLD~~~------------~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... +.-..++...... +|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566666777665 4899999999865 3333444455554 466554444
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-16 Score=164.03 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 658 (1140)
|++++|+||||||||||+++|+|... . +| +.++|.+... ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999754 2 46 7777766533 23567889999974 1111 111 01110
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHH-HHHH---HHhhCCcEeEEeC--CCCCCCHHHHHH
Q 001146 659 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 731 (1140)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv-~ia~---al~~~p~illlDE--PtsgLD~~~~~~ 731 (1140)
+..+ ..+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| |+..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011233332 235999999988 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHhhCCCEEEE----EecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 732 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+.+.+ +...++|+ ++|+.+ ..+.|++..+. +|+++...+.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~n 172 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKEN 172 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSSS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChHh
Confidence 54444 44455553 238764 24568887776 47877755433
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-15 Score=169.50 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ..+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965421 12444333333211 11112223333211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~ 735 (1140)
.++-.+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 9999999999999999999 666543 3
Q ss_pred HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 736 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+.++++.|+||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 34446679999999999873 488999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-16 Score=190.64 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=107.3
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC------cccccceEEEeccCCCCCCCCCHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
++.++. +||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.++|++|+..+++.+||+|+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 344543 999999999999999999998653 24899999998742 12466789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC------C
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------T 721 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP------t 721 (1140)
+.+........ + .++| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~------------------~--------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGE------------------G--------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCS------------------S--------------SCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCC------------------c--------------cccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 98753211000 0 0011 0112222223458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCH------HHHHhh-----ceEEEEecCCEEEEECCC
Q 001146 722 SGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSI------DIFEAF-----DELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~------~~~~~~-----d~v~~l~~gg~~~~~g~~ 779 (1140)
+|||+..+..+.+.++++.++ +.++++++|+.+. .+.+.. ..++++.+ +..+..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 999999999999999996533 6788899998762 222222 33566664 555555543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-14 Score=157.60 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=101.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
.+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999984432 333 23433211 2346777665432 11112221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC--CCCHHHH---H
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 730 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts--gLD~~~~---~ 730 (1140)
...... ..+++++.+++.+..+.. ...||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~~----~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSAE----ERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCHH----HHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcChh----hhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 112222 245667778777665443 356999998875 68899999999999999 9997443 7
Q ss_pred HHHHHHHHHh-hCCCEEEEEecCCC
Q 001146 731 IVMRTVRNTV-DTGRTVVCTIHQPS 754 (1140)
Q Consensus 731 ~v~~~l~~~~-~~g~tvi~~~H~~~ 754 (1140)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-15 Score=160.66 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred eeeeCceE-EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccc---eEEEeccCCCCCCCCC
Q 001146 568 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~q~~~~~~~lT 643 (1140)
+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.......+ ..++.+|+.... .++
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 45888886 8999999999999999999999999975331 1234444332221110000 001111100000 000
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 721 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPt 721 (1140)
.++...+.++ ... .....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ------------------------~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------------------IIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------------------EEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------------------EEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000000000 000 012359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHhh-CCCEEEEEecCCC-------HHHHHhhceEEEEec
Q 001146 722 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 769 (1140)
Q Consensus 722 sgL--D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~v~~l~~ 769 (1140)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|++++|++
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99888999999999864 5899999999973 247788999999985
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-15 Score=176.22 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=94.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+.++|++++|. ++.+++|+||+| +|+||||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367777776552 245899999998 999999999999999999975421112222222211
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
....+.+++++|++.+.+.+||.||+.+..... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112345789999988888899999988754321 0000 11121111 1 136677888
Q ss_pred HHHHHHHHhhCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 701 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 701 Rv~ia~al~~~p~---illlDEPt-sgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
|++|||+++.+|+ +|++|||| .|||+... +.++++.. +.++|+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9999999999999 99999999 69999873 34445543 788888888643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-15 Score=160.12 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=94.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc---CceEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 618 (1140)
++++|+++.|.. .++++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 678899988841 25777 8899999999999999999999999999651 0123454432111
Q ss_pred ccCcccccceEEEeccCCCC----CCCC---CHHHHHHHHHH-ccC----------CCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 619 PKKQETFARISGYCEQNDIH----SPFV---TIYESLLFSAW-LRL----------SPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~----~~~l---Tv~e~l~~~~~-~~~----------~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
-. .....-++ +.+-+ .+.- ..+..+..... .+. ....+.. +..+.+.++..++..
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL--DQQMIEWAVDSNIAV 140 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHHHTTCCE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh--HHHHHHHHHHcCCCe
Confidence 00 00000011 00000 0000 01111211111 000 0111221 122344555555543
Q ss_pred cccccccCCCCCcCCHHHHHH-HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCE
Q 001146 681 LRQSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqR-v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t 745 (1140)
.. +++. ...+|+||||| +..+++++.+|+++++|||||++|......+.+.|.++.++|.|
T Consensus 141 ~~---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LV---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EE---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EE---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 21 1111 23589999999 89999999999999999999999999999999999988765544
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=140.58 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=62.6
Q ss_pred ccccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
.+..||||||||++||++++ ++|++++|||||+|||..+...+.+.+++... ++++|+++ |+..+.+.+|+|
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivit---h~~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVIT---LRDVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEEC---SCHHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEE---ecHHHHHhCCEE
Confidence 35679999999999999996 56799999999999999999999999987643 33344444 456889999999
Q ss_pred EEec
Q 001146 82 ILLS 85 (1140)
Q Consensus 82 ~vL~ 85 (1140)
+.+.
T Consensus 137 ~~v~ 140 (173)
T 3kta_B 137 IGVS 140 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=137.88 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 691 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35699999999999999974 4699999999999999999999999998864 57899999985 56789999986
Q ss_pred Ee
Q 001146 767 MK 768 (1140)
Q Consensus 767 l~ 768 (1140)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-16 Score=166.58 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=110.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 659 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 659 (1140)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999998732 36788888654321 123566665544455688888876542110000
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC--CHHHHHHHHHHH------HHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 660 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L--SgGqrqRv~ia~------al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
...+++.+......+ ..+.+ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 74 ---------~~~ild~~~~~~~~~------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 ---------NDVVLDYIAFPDEAE------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ---------CEEEEESCCCHHHHH------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ---------CcEEEeeccCHHHHH------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 000111100000000 01234 888888888888 9999999988884 899988877
Q ss_pred HHHHHHHHhhCCCEEEEEecC-CCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
.+.++.+.+.+.++|.++|+ ++ ++.+.+|+|+ + .|+++..|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888776667899999998 76 6889999999 4 68999999874
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-13 Score=154.39 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCCccc-cCccchhhhhHHHHHhh---------cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCCh
Q 001146 3 GDEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 72 (1140)
Q Consensus 3 G~~~~r-gLSGGQKqRIsIAraLv---------~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~ 72 (1140)
++...+ .+|||||||++||++|+ ++|+||+||||||+||+.....+++.+++.. .|+|++.| ...
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~ 332 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP 332 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc
Confidence 445566 79999999999999999 8999999999999999999999999987632 45555544 432
Q ss_pred hHHhhccceEEecCCeEEEecCcchH
Q 001146 73 ETYDLFDDIILLSDGQIVYQGPRELV 98 (1140)
Q Consensus 73 ~t~~~fD~I~vL~~G~vvy~G~~~el 98 (1140)
.+|++++|++|++++.|+++++
T Consensus 333 ----~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ----GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ----TCSEEEEEETTEEEECCCTTTS
T ss_pred ----cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999999876
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=162.02 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCcC-CHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 691 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 691 ~~~L-SgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4557 999999999999999999 99999999999999999999999999987 899999999964 56779999999
Q ss_pred ec
Q 001146 768 KR 769 (1140)
Q Consensus 768 ~~ 769 (1140)
.+
T Consensus 471 ~~ 472 (517)
T 4ad8_A 471 EK 472 (517)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-14 Score=153.20 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=85.5
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 651 (1140)
+-.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+|+..
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~----- 81 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRD----- 81 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTT-----
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcC-----
Confidence 334467899999999999999999999999976532368999999876543 23455788988644333222200
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
+.++.+.. .|. ..+.| +++ ..+++..+++++|| ||+.++..
T Consensus 82 -------------------~f~E~~~~-------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 82 -------------------AFLEHAEV-------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp -------------------CEEEEEEE-------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred -------------------HHHHHHHH-------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00000000 000 01122 222 45566678999999 99999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCC
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
+.+.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998775 5899999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-14 Score=163.83 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=109.7
Q ss_pred eeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 570 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 570 L~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
|+++|+++++|++ ++|+||||||||||+|+|+|..-. |.. +... .....++.++|++|++.+++.+||.||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 999999999999999999997421 211 1110 111234578999999988888999999
Q ss_pred HHHHHHccCCCCCCHHH--------HHHHHHHHHHHc-CCcc----ccccc----cc--CCCCCcCCHHHHHHHHHHHHH
Q 001146 648 LLFSAWLRLSPEVDSET--------RKMFIDEVMELV-ELNP----LRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 708 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~-~l~~----~~~~~----~g--~~~~~~LSgGqrqRv~ia~al 708 (1140)
+.|+.. ..... .+...++.++.. ++.. ..|.. +. .+...+|+-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876421 11110 122334444443 4331 12221 11 11123577766 7899999
Q ss_pred hhCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecC
Q 001146 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 752 (1140)
Q Consensus 709 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~ 752 (1140)
..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899888886 77779999888764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-13 Score=156.61 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred CccchhhhhHHHHHhhcCc--eEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe---
Q 001146 10 ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL--- 84 (1140)
Q Consensus 10 LSGGQKqRIsIAraLv~~P--~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL--- 84 (1140)
+||||||||+||++|+.+| +||+|||||+|||..+...+.+.|++++ .++||+++.|. .++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~--~~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHL--AQIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSC--HHHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCc--HHHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999876 36676665554 5788999999999
Q ss_pred -cCCeEEEecC
Q 001146 85 -SDGQIVYQGP 94 (1140)
Q Consensus 85 -~~G~vvy~G~ 94 (1140)
.+|+++-...
T Consensus 372 ~~~G~~~~~~~ 382 (415)
T 4aby_A 372 VEDGRTVSHVR 382 (415)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCceEEEEE
Confidence 9999887643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-15 Score=156.09 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=89.2
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHHc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 654 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 654 (1140)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 467999999999999999999999999843 47899998764221 11234567777543 457899998765421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH
Q 001146 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734 (1140)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~ 734 (1140)
....... ..++.+++..++....+. + .....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000111111112111100 0 112359999999999999999999887 68877777766
Q ss_pred HHHHH
Q 001146 735 TVRNT 739 (1140)
Q Consensus 735 ~l~~~ 739 (1140)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=135.88 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=98.7
Q ss_pred eeeCce-EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++. ++.. +. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~-----------------~~~~----~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDT-----------------EGGF----SP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEES-----------------SCCC----CH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEEC-----------------CCCC----CH-HH
Confidence 467776 4899999999999999999999999998 221 12233322 2111 11 11
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH--HHHHHHHHHHHhhC-CcEeEEeCCCCCC
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 724 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG--qrqRv~ia~al~~~-p~illlDEPtsgL 724 (1140)
+.-... . ..... +++++.+.+ ...+++ ++++++.+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~--~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-T--RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-T--TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-h--cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110000 0 01111 122222211 124444 36788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHhhC-CCEEEEEecCCCH------------HHHHhhceEEEEecC
Q 001146 725 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 725 D~~~--------~~~v~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~v~~l~~g 770 (1140)
|+.. ...+++.|++++++ |.|+|+++|.... .+...+|++++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 24566667777654 8999999997641 467789999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-13 Score=155.24 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=95.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|...|.+.. ...++.+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 577766 7999999999999999999999999975421 1588877666553 22345567777731
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
+++.. ..+ +.+|+++|..+|+++++|||+ |.++
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 12210 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.. ..++. +..|.+++.++|..+ +.+.+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 356899999999965 678889988774
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=145.24 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=71.2
Q ss_pred ccccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
..+.||||||||++||++|+ .+|+||+|||||++||..+...+.+.++++. .+++++++-|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~--~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHN--KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCC--TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECC--HHHHhhCceE
Confidence 45789999999999999996 7899999999999999999999999998853 36677776565 4688999987
Q ss_pred --EEecCC-eEEEecCcchHH
Q 001146 82 --ILLSDG-QIVYQGPRELVL 99 (1140)
Q Consensus 82 --~vL~~G-~vvy~G~~~el~ 99 (1140)
++|.+| ..+.....++..
T Consensus 292 ~~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEEESSSCEEEEECCC----
T ss_pred EEEEEeCCEEEEEEEEcchhh
Confidence 778777 455556666554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-13 Score=152.90 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=100.1
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC-cccccceEEEec-cCCCCCCCCCHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCE-QNDIHSPFVTIYE 646 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~v~-q~~~~~~~lTv~e 646 (1140)
+++++|+.+++|++++|+||||||||||+++|+|..++. +|.|.++|.... ....++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 459999999999999999999999999999999987753 799999985321 122456788887 54221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCH
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 726 (1140)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233457777778888999999999986
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 727 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 727 ~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
....+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345566666443457899999965 57889999999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-15 Score=170.82 Aligned_cols=167 Identities=8% Similarity=0.020 Sum_probs=99.1
Q ss_pred eeeCceEEEeC--ceEEEEeCCCCCChHHHHHHHhcCCcCceEE----EEEEEcCcccCcccccceEEEeccCCCCCCCC
Q 001146 569 LLNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 569 iL~~vs~~i~~--G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 642 (1140)
+.+.|++.+++ |+.++|+||||||||||+++|+|...+ .. |++.+++... ..+...+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 35789999999 999999999999999999999998663 35 4444421100 000001111
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC--cccccccccCCCCCcCCHHHHHHHHHHHHHh-hCCcEeEEeC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 719 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-~~p~illlDE 719 (1140)
.. +++.+... + .......+.+.+.+ .+..++. ...+|+|++||..+++++. .+|++++|||
T Consensus 222 ~~-~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 12 22332210 0 00000001010100 0111111 1236777788888888775 5999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 720 ---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 720 ---Pt------sgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
|+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|++.+++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48899999975 3 4566777777665
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-15 Score=171.35 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=97.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCcC------ceEEEEEEEcCcccCcc------------------cccceEEEe---c
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 633 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 633 (1140)
++++|+|+||||||||+|.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999987521 02368888888765321 122334555 4
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hc-cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 634 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 634 q~~~~~~~lTv~e~l~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
|+..+.+..++.||..++. .+ +.-.......+...++.+++.+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 6555555666666654320 00 0000000000111112233334444443332 2589999999999899999
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
+|+++ ||| ..+.+.++++. .+.||++++|.+.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67788888774 5899999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-12 Score=144.62 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=85.2
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEc-CcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+++++.. .+|++++|+||||||||||+|+|+|... + ..|+|.++ |.+.. ...++.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 4445543 4799999999999999999999999765 3 36888887 65442 2345678999999988888999984
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al 708 (1140)
. + ...+.++..+.+.++++.+++.+..+... .++| ||+||++||+++
T Consensus 282 ~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455555667788899999988777653 4699 999999999875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=154.11 Aligned_cols=87 Identities=6% Similarity=-0.066 Sum_probs=71.5
Q ss_pred cccCccchhhhhHHHHH--hhcCceE----eeeeC-CCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC--h---hH
Q 001146 7 IRGISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--P---ET 74 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAra--Lv~~P~I----LlLDE-pTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~--~---~t 74 (1140)
.++||||||||++|||+ |+.+|+| |+||| ||+|||.. ...+.+.+ +..+.|+|+.+|+++ . ..
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~ 307 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVK 307 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHH
Confidence 46799999999999999 9999999 99999 99999997 33333333 334667888889888 3 44
Q ss_pred Hhhccc-----eEEec-CCeEEEecCcchHH
Q 001146 75 YDLFDD-----IILLS-DGQIVYQGPRELVL 99 (1140)
Q Consensus 75 ~~~fD~-----I~vL~-~G~vvy~G~~~el~ 99 (1140)
-+.+|+ |++|+ +|+++ .|+++++.
T Consensus 308 ~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 308 KTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 578999 99999 99999 99987764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=142.42 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCcCCHHHHHHH------HHHHHHhhC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 691 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 691 ~~~LSgGqrqRv------~ia~al~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
++.||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567889999 99999999999999999999999998874 3579999999974 5788999
Q ss_pred EEEEecCC
Q 001146 764 LFLMKRGG 771 (1140)
Q Consensus 764 v~~l~~gg 771 (1140)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-12 Score=151.70 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=67.7
Q ss_pred cccC-ccchhhhhHHHHHhhcCc--eEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 7 IRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 7 ~rgL-SGGQKqRIsIAraLv~~P--~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. ++|||++.|. .++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~--~~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHL--AQIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCC--HHHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999998764 5677766554 567788999999
Q ss_pred ecCCe
Q 001146 84 LSDGQ 88 (1140)
Q Consensus 84 L~~G~ 88 (1140)
|.+|.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 96653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-14 Score=156.00 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=96.2
Q ss_pred CceEEEEeCCCCCChHHHHHHHh---cCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHc-
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL- 654 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~- 654 (1140)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+.+++|+..+.+..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8765 346777777654321 1223344566777778888999999765321
Q ss_pred -------cCCCCCCHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCcCCHHHHHHHHHHHHH-hhCC
Q 001146 655 -------RLSPEVDSETRKMFIDEVME--LVE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANP 712 (1140)
Q Consensus 655 -------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al-~~~p 712 (1140)
... ....+ .++.+.+ .++ +....+.. ...||| |+ ++| +.+|
T Consensus 103 ~~~~~il~g~-~~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 103 RGQHWLLDGF-PRTLG----QAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp TTSCEEEESC-CCSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCC
T ss_pred CCCeEEEECC-CCCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCC
Confidence 100 01111 1222221 122 11112222 345898 66 777 9999
Q ss_pred cEeEEe----CCCCCCCHHHHHHHHHHHHHHhhC
Q 001146 713 SIIFMD----EPTSGLDARAAAIVMRTVRNTVDT 742 (1140)
Q Consensus 713 ~illlD----EPtsgLD~~~~~~v~~~l~~~~~~ 742 (1140)
++++|| |||+|||..+...+.+.++++.++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999 999999999999999999887654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-12 Score=127.77 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=62.4
Q ss_pred ccccCccchhhhhHHHHH-----hhcCceEeeeeC--CCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec--CCChhHHh
Q 001146 6 MIRGISGGQKKRVTTGEM-----MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYD 76 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAra-----Lv~~P~ILlLDE--pTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh--Qp~~~t~~ 76 (1140)
....||||||||++||++ |..+|++|+||| ||++||..+...+.+.+++ .++|++++.| |....+-+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHH
Confidence 455799999999999996 999999999999 9999999888777777653 5677889888 44444545
Q ss_pred hccceEEecCCeEEE
Q 001146 77 LFDDIILLSDGQIVY 91 (1140)
Q Consensus 77 ~fD~I~vL~~G~vvy 91 (1140)
.+|+ .+|++++
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 5565 5677776
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-14 Score=142.16 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=84.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCcccCc------cccc-ceEE----EeccCCCCCCCCCHHHHH
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~lTv~e~l 648 (1140)
++++|+||||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.++ +++|+..++- +|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 58999999999999999999997543 2236999999987321 2333 3455 7888765440 00
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEe-------EEeCC
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 720 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~il-------llDEP 720 (1140)
.+.+ ....++++++. +. -.|+.++. +||||||||++|||+++++|++. .-|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 11134566655 43 35777764 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHhhCC
Q 001146 721 TSG---LDARAAAIVMRTVRNTVDTG 743 (1140)
Q Consensus 721 tsg---LD~~~~~~v~~~l~~~~~~g 743 (1140)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33344556677765555544
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.8e-13 Score=153.06 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=102.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------c--ccceEEEeccCCCCCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 640 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~ 640 (1140)
-+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999997653 258999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh-hCC-cEeEEe
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMD 718 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-~~p-~illlD 718 (1140)
.+|+++++.++..-. .+ -.+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864311 00 00122222221111 12223357888888764 457 356566
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEec
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 751 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H 751 (1140)
+||+|.|.. +.++.+.+ .|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 688886654 22333332 4889999999
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=141.61 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=66.4
Q ss_pred ccccCccchhh------hhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 6 MIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 6 ~~rgLSGGQKq------RIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
..+.||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.++++.. .++||+++-|. .++.+.+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCC
Confidence 45789999999 67888999999999999999999999999999999988664 46677776665 56889999
Q ss_pred ceEEec
Q 001146 80 DIILLS 85 (1140)
Q Consensus 80 ~I~vL~ 85 (1140)
+|++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=133.57 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=84.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc--CCcC---ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++.+. . ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999998 3321 00135566655431 0 0000000
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH-HHHHHHHh--hCCcEeEEeCCCCCCCH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR-v~ia~al~--~~p~illlDEPtsgLD~ 726 (1140)
....+. ... +++++.+.+ ....+..+..+ +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 111111 111 112221111 01244444332 33344444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHhhC-CCEEEEEecCCCHH------------------HHHhhceEEEEecC
Q 001146 727 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 770 (1140)
Q Consensus 727 ~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~d~v~~l~~g 770 (1140)
. . ...+++.|++++++ |.|||+++|..... +...+|.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34556666666544 99999999965421 11278999999863
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-12 Score=124.01 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.0
Q ss_pred hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEecCCC
Q 001146 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 754 (1140)
Q Consensus 709 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t-vi~~~H~~~ 754 (1140)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999888777888 888999654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-13 Score=133.50 Aligned_cols=79 Identities=24% Similarity=0.104 Sum_probs=64.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 346899999999999999999999999999999999976 4 3699999998764221111 2788988777 89999
Q ss_pred HHHHH
Q 001146 646 ESLLF 650 (1140)
Q Consensus 646 e~l~~ 650 (1140)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-12 Score=151.31 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.1
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
-++++++++.|+.++|+|+|||||||||++|+|... .+.+.+... ....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 123333221 1223445544330 0111111110
Q ss_pred HHHHccCCCCCCHHHHH--HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 650 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+...............+ ++++.++..+++. +. ....||+||+||+.+|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 1122233333332 11 1346999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHH-hhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 728 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 728 ~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
.+ ...+.+++. .+.|.+++.++..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444443 34577766655433335666666654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-11 Score=139.66 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 693 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999998866688999999984 5678899999997
Q ss_pred c
Q 001146 769 R 769 (1140)
Q Consensus 769 ~ 769 (1140)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=127.86 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=42.4
Q ss_pred hhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 709 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 709 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
+.+|++|+||||++ ++|+.....+.+.+.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999988877899999999987643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.4e-12 Score=141.95 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=95.4
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cccc--eEEEeccCCCCCCCCCHHHH
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~--~~~~v~q~~~~~~~lTv~e~ 647 (1140)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 478999999999999999999999997553 258899998876321 1122 35599999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+.++..... + ..+++..|+.+..+.. .++.-.|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d----------~vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--D----------VVLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--S----------EEEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--h----------hhHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987532110 0 0012223332221111 1222238899988888888885554
Q ss_pred HHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 728 AAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 728 ~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
.++++.++.+. +.+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34455555555 348999999995
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-13 Score=153.52 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=104.2
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cccceEEEeccCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 639 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~ 639 (1140)
+.+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.+++++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3479999999999999999999999999999999996542 257888888765321 2345689999988776
Q ss_pred CCC------------CHHHHHHHH-HH----------------------cc-----CCCCCCHHHHH---HHHHHHHHHc
Q 001146 640 PFV------------TIYESLLFS-AW----------------------LR-----LSPEVDSETRK---MFIDEVMELV 676 (1140)
Q Consensus 640 ~~l------------Tv~e~l~~~-~~----------------------~~-----~~~~~~~~~~~---~~~~~~l~~~ 676 (1140)
+.. +++|.+... .. .. ..... .++.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~-~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA-GDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC-cccHHHHHHHHhccccEE
Confidence 532 233332110 00 00 00000 00000 0011111112
Q ss_pred CCcccccccccCCCCCcCCHHHHHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 677 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 677 ~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.+..
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 22 112211 113589999999999999987 688887 99999999999999998764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-12 Score=141.74 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=84.7
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH----
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW---- 653 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~---- 653 (1140)
+++.+++|.||||||||||.+.|++...+. | . . ++.+.+|+|++.+++ .+.++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~---g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK---Y------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH---H------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc---C------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 478899999999999999999999865421 1 0 1 344567799998886 488899887631
Q ss_pred c--c-CCCCCCHHHHHHHHHHHHHHcCCcc--c--ccccccCCCCCcCCHHHHHHHHHH--HHHhhCCcEeEEeCCCCCC
Q 001146 654 L--R-LSPEVDSETRKMFIDEVMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 654 ~--~-~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~~g~~~~~~LSgGqrqRv~ia--~al~~~p~illlDEPtsgL 724 (1140)
+ + .+...+.+ ...+.++.+.... . ....+. .....+||||+||+++| +++ +|+|||+|||++++
T Consensus 93 ~~~~g~p~a~d~~----~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDMK----LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCHH----HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHHH----HHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 1 1 12222222 2445555553320 0 011111 11256999999999997 555 99999999999999
Q ss_pred CHHH
Q 001146 725 DARA 728 (1140)
Q Consensus 725 D~~~ 728 (1140)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-11 Score=120.42 Aligned_cols=69 Identities=12% Similarity=-0.026 Sum_probs=54.1
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchH----------------HHHHHHHHHHHHhHhcCCEEEEEecCCCh
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 72 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~----------------sa~~vv~~L~~~a~~~~~tiiitIhQp~~ 72 (1140)
..|||||||++|||++..+|++|+|||||+|||.. +...+.+.++++.++ |.|+|++. |..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt--H~~ 159 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL--NSP 159 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE--CSH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe--CCH
Confidence 36999999999999999999999999999999998 447788888776655 66666554 455
Q ss_pred hHHhhccc
Q 001146 73 ETYDLFDD 80 (1140)
Q Consensus 73 ~t~~~fD~ 80 (1140)
+.+..++.
T Consensus 160 ~~~~~~~~ 167 (171)
T 4gp7_A 160 EEVEEVVF 167 (171)
T ss_dssp HHHHHEEE
T ss_pred HHhhhhhh
Confidence 55544443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=135.33 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=64.3
Q ss_pred cccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 7 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
...||||||||++||++|+ ++|++|+|||||++||..+...+.+.+++... .+++++++.|+ ..+...+|+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999987542 35566665554 67889999999
Q ss_pred Eec
Q 001146 83 LLS 85 (1140)
Q Consensus 83 vL~ 85 (1140)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-13 Score=157.58 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=104.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
..+++++++.+++|+.++|+|||||||||||++|+|..++. +|.|.++|.+.-.....+.++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 34789999999999999999999999999999999987644 6889998865211112344566665443222345554
Q ss_pred HHHHHHHccCC----CCCCHHHHHH------------------HHHHHHHHcCCcc---------cccccccCCCCCcCC
Q 001146 647 SLLFSAWLRLS----PEVDSETRKM------------------FIDEVMELVELNP---------LRQSLVGLPGVSGLS 695 (1140)
Q Consensus 647 ~l~~~~~~~~~----~~~~~~~~~~------------------~~~~~l~~~~l~~---------~~~~~~g~~~~~~LS 695 (1140)
.+.-..+.+.. .+....+... .++++++.+.... ..+..+. ....+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEEe
Confidence 44322221100 0111111000 0122333322211 0110000 113479
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE--EecCCCHHHHHhh
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 761 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 761 (1140)
+|||||.+++. + | |+|||+.....+.+.+.++.+.|+|+++ ++|+++ ++.+.+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999876641 1 7 9999998777777777666666888875 888764 444444
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=132.18 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=64.0
Q ss_pred ccccCccchhhhh------HHHHHhhcC-ceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 6 MIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 6 ~~rgLSGGQKqRI------sIAraLv~~-P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
..+.+|||||||+ ++|++|..+ |++|+|||||+|||..+...+.+.++++. .+.+|+++.|.| ++...+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhC
Confidence 3467999999988 567999999 99999999999999999999999998743 335677776765 467899
Q ss_pred cceEEec
Q 001146 79 DDIILLS 85 (1140)
Q Consensus 79 D~I~vL~ 85 (1140)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-10 Score=132.38 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=86.8
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHH--hcCCcC---ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l--~g~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+-+++|++++|+||||||||||++.| .+..++ +...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 67999999999999999999999955 454331 0112456666543100 0 1111
Q ss_pred -HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH-HHHHHHHHHHHHh--hCCcEeEEeCCCCCCC
Q 001146 650 -FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 650 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg-GqrqRv~ia~al~--~~p~illlDEPtsgLD 725 (1140)
...++. ... +.+++.+.+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 111111 111 1122211110 11222 2334444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHhhC-CCEEEEEecCCC------------------HHHHHhhceEEEEecC
Q 001146 726 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 770 (1140)
Q Consensus 726 ~~~~------------~~v~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~v~~l~~g 770 (1140)
+... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 7533 5678888888754 999999999721 1245668999999863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-12 Score=136.37 Aligned_cols=148 Identities=13% Similarity=0.067 Sum_probs=80.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
.++|++++|+||||||||||+++|+|...+ |...|.|.++|....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 579999999999999999999999997542 122456666554432211 11110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH-HHHhhCCcEeEEeCCCCCCCHHHHHHHHH
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 734 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia-~al~~~p~illlDEPtsgLD~~~~~~v~~ 734 (1140)
.+...+... ..+.++.+...+..+....+.+ ..+|+||+||+++| ++++.++.++++|||.-
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------ 141 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------ 141 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG------------
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh------------
Confidence 000111111 1222222211111122222222 35899999999998 88888888888899841
Q ss_pred HHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 735 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 735 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.++.+.--.+|++.+.....+.+...|
T Consensus 142 --~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 --RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred --HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111222236777777655445556666
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-10 Score=129.38 Aligned_cols=163 Identities=15% Similarity=0.023 Sum_probs=83.4
Q ss_pred EEEeCCCCCChHHHHHHHhc-CCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 001146 583 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 660 (1140)
+.|.||||+|||||+++|++ ...+. .|.+.++|.+... ...+..+++++|.+.+.-..+ + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 34332 5788888765432 112345677877654311110 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 661 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
.... +++.++.+......+... .+|| +..+|+++++|||++ ||..+...+.+.+++..
T Consensus 105 ~~~~----~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRIV----IQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHHH----HHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chHH----HHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1111 223333321111011110 2566 788999999999999 99999999999998764
Q ss_pred hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHh
Q 001146 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 791 (1140)
Q Consensus 741 ~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~ 791 (1140)
.+.++|+++|++..-.-.+-+| ...+.+.|++. .++.++..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 4789999999986322222233 24455566653 33444443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-11 Score=136.20 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=79.8
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCcc--ccc-ceEEEeccCCCCC-----CCCCH
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTI 644 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~~-----~~lTv 644 (1140)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34569999999999999999999999 7653 4799999 88766432 112 2579999998553 67899
Q ss_pred HHHH--HHH------HHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHH
Q 001146 645 YESL--LFS------AWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 707 (1140)
Q Consensus 645 ~e~l--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~a 707 (1140)
|++ .|. .+.+. .....+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 443 11221 0011112235789999999985 555543 4699999999999873
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-12 Score=150.85 Aligned_cols=133 Identities=14% Similarity=0.021 Sum_probs=89.0
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEec------
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------ 633 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~------ 633 (1140)
..+|+++ + .++|++++|+|||||||||||++|+|...+. +|.|.+.+.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467887 4 3899999999999999999999999975532 5888888877532 11223344433
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 634 ---QNDIH--SPF----VTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 634 ---q~~~~--~~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
|++.. ++. .|+.+++.++..-.. ....+.. ..+ +.+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i-~rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAV-TRLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHH-HHHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHH-HHHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77654 233 689999987642110 0111111 122 345667876543 2 2469999999
Q ss_pred HHHHHHHHhhCCcEeE
Q 001146 701 RLTIAVELVANPSIIF 716 (1140)
Q Consensus 701 Rv~ia~al~~~p~ill 716 (1140)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-12 Score=148.53 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=116.1
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc----------CceEEEEEEEcCcccCc----ccccce---EEEeccCCCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYPKKQ----ETFARI---SGYCEQNDIH 638 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~q~~~~ 638 (1140)
.+++|+.++|+|+||||||||+|+|+|... -.+..|.+.++|..... ...++. ...+.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999321 12457999998854311 011122 2466677777
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC--cE
Q 001146 639 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 714 (1140)
Q Consensus 639 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p--~i 714 (1140)
.+..+..|++ .|...++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7766666655 34333321 111222222211 11 122356553 89 99
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHH-hhCCCEEEEEecCCCHHHHHhhceEE-EEecCC-EEEEECCCCc
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLGR 781 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~-~l~~gg-~~~~~g~~~~ 781 (1140)
+++|||+.++|+......++.+++. .+.|.|++ +|... ++.++||++. +|.+ | ++++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999888 66677764 99875 6889999999 8875 7 8888877653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-11 Score=134.10 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=61.5
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||||| ||||+++|+||+ ||+||+.++..+.. + .|+.++++.+|+| +|++
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----------------l-tH~~~~~~~aD~i-vl~~ 252 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----------------L-HSRVQTFRFEQPC-TDES 252 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------------G-TTTEEEEECCCCC-CCC-
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------------H-hCCHHHHHhCCEE-EEeC
Confidence 45799999999 999999999999 99999999876641 1 3788889999999 9999
Q ss_pred CeEEEecCcchHHHHHHhC
Q 001146 87 GQIVYQGPRELVLEFFASM 105 (1140)
Q Consensus 87 G~vvy~G~~~el~~~F~~~ 105 (1140)
|+++++|+|+++..+|..+
T Consensus 253 G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 253 GEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp --CCCCCCHHHHHHHHHHS
T ss_pred CEEEEeCCHHHHHHHHHHH
Confidence 9999999999997666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-13 Score=143.17 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 704 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 704 ia~-al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+++ +++.+|++++|||+|+++|..+...+.+.|++..+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 688889999999999999999999999999876543 2335621 4679887765
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-11 Score=135.61 Aligned_cols=151 Identities=15% Similarity=0.054 Sum_probs=93.9
Q ss_pred eeeeeCceEEEeCc-------eEEEEeCCCCCChHHHHHHHhcCCcC--ceEEEEEEEcCcccCc---ccccceEEEecc
Q 001146 567 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 634 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G-------~~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~q 634 (1140)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788899888877 89999999999999999999996421 1345555554443321 112456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 001146 635 NDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713 (1140)
Q Consensus 635 ~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ 713 (1140)
.+.+.+ ++.|++.......... -.......+.++..++.+++.. +++.. ..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce--------
Confidence 877765 7888885443221100 0001111223444555555544 33332 46999999998654
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
.+||+.+..++.+.|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888899999988764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-12 Score=139.52 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=85.1
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCC-CCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 642 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~l 642 (1140)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45799999999999 999999999999999999997653 6889999765321 1223456666653 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
++.|++......+ .... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SDRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-----CCCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 6666654321110 0000 00 011222222 2469999999999999999999986 88753
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-09 Score=114.63 Aligned_cols=51 Identities=12% Similarity=-0.115 Sum_probs=43.6
Q ss_pred chhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCC
Q 001146 13 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 70 (1140)
Q Consensus 13 GQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp 70 (1140)
|||||++|||||+.+|+||+||||||| +...+.+.++++ ..++||| +.|.+
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l--~~g~tii-vtHd~ 158 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL--GFGSKMV-VTGDI 158 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB--CTTCEEE-EEEC-
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh--cCCCEEE-EECCH
Confidence 999999999999999999999999999 677888988875 3577888 55543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-10 Score=124.17 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=66.6
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCcc-cccce-EEEeccCCCCCC----CCCHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 645 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~lTv~ 645 (1140)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+..+.. ...+. .+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 34799988 77665321 11122 699999987665 6789
Q ss_pred HHHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 646 ESLL--FSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 646 e~l~--~~~------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 331 1221110011111234788999999976433221 2477777763
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-10 Score=129.00 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=65.0
Q ss_pred eeeCceEEE-------------------eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCccccc
Q 001146 569 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQETFA 626 (1140)
Q Consensus 569 iL~~vs~~i-------------------~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~ 626 (1140)
+++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ +|...... .+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HH
Confidence 578888877 89999999999999999999999996430012688888 88765322 23
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 627 RISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 627 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
+.++++ |...+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 446788 7777778899999998866554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-08 Score=103.43 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHHh--hCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHH-------HHHhhceEEEEec
Q 001146 702 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 769 (1140)
Q Consensus 702 v~ia~al~--~~p~illlDEPtsgL--D~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~v~~l~~ 769 (1140)
...++.++ .+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 589999999999988 5544455555665554 5689999999976531 4577899999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-09 Score=114.51 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=74.4
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 651 (1140)
.+++..++|++++|+|||||||||+++.|++...+. .|+|.+.+.+.... ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~-------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA-------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH-------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH-------------------HHHHH----
Confidence 345567899999999999999999999999965321 24555554432100 00111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH---HHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv---~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
.....+..++.. ....|+|+.+++ +|++++..+|+++++|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 122334445432 124789999999 99999999999999999974 233
Q ss_pred HHHHHHHHHHH
Q 001146 729 AAIVMRTVRNT 739 (1140)
Q Consensus 729 ~~~v~~~l~~~ 739 (1140)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555444
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-08 Score=113.74 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=105.6
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEEEcCcccCcccccce-EEEeccCCCCCCCCCHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI-SGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~-~~~v~q~~~~~~~lTv~e 646 (1140)
.|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .+.+.+.+.......++ .+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 488888889999999999999999999999998743210 11 22222222111111000 000000 000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh--hCCcEeEEeCCCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 724 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~--~~p~illlDEPtsgL 724 (1140)
. ++. .....++. .++.+.++.++..+..-. . ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~~-~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPEDW-GKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHHH-HHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHHH-HHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 12333332 234455555543332211 1 1358999987 5677776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHhhC-CCEEEEEec---------C--CCH-------HHHHhhceEEEEecC
Q 001146 725 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 725 D~--------~~~~~v~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~v~~l~~g 770 (1140)
++ .....+.+.|++++++ |.+||+++| + |.. .+.+.+|.|++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 42 3346777788888754 899999999 2 421 366789999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-09 Score=117.66 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCccc--c-cceEEEeccCCC-----------
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI----------- 637 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~q~~~----------- 637 (1140)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|.+..... . .+.+++++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34567999999999999999999999998764 4799999 887764311 1 134789999874
Q ss_pred -----CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 001146 638 -----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 685 (1140)
Q Consensus 638 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 685 (1140)
++|.+|+ ||+.|.. +... .+.+.+++++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 9888752 1111 11223578999999995 555544
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=6e-11 Score=127.65 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-cCCc
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 605 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-g~~~ 605 (1140)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999 9754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=8e-08 Score=109.22 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH----hhCCCEEEEEecCCCH-----
Q 001146 700 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 755 (1140)
Q Consensus 700 qRv~ia~al~~~--p~illlDEPtsgL----------D~---~~~~~v~~~l~~~----~~~g~tvi~~~H~~~~----- 755 (1140)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||++.|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhhceEEEEecCCEEEEECC
Q 001146 756 ----------DIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 756 ----------~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14567898888876 45555554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.2e-08 Score=107.13 Aligned_cols=118 Identities=20% Similarity=0.120 Sum_probs=79.3
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHH
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 650 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 650 (1140)
++++++ +|++++++|+||+||||++..|++..... .|++.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHh------------------HH-HHH--
Confidence 678887 99999999999999999999999965421 356666665432100 00 101
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC-CCCCCHHHH
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 729 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP-tsgLD~~~~ 729 (1140)
..+.+..++..... + .+-.-.+.+|.+|+++...+++++++||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 11234466789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 001146 730 AIVMRTVRNT 739 (1140)
Q Consensus 730 ~~v~~~l~~~ 739 (1140)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-09 Score=127.90 Aligned_cols=166 Identities=12% Similarity=0.065 Sum_probs=92.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhc--CCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCC--CHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV--TIYES 647 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l--Tv~e~ 647 (1140)
.+++.+.++..++|.|++||||||+++.|.. ..... .+++.+.+.+.+...+.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 3677888899999999999999999999865 12111 133444333332211110 0001111 11111
Q ss_pred HHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH----------HHHHHHhhCCc-Ee
Q 001146 648 LLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-II 715 (1140)
Q Consensus 648 l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv----------~ia~al~~~p~-il 715 (1140)
...+.. ++ ...++.+++ .+.++..|+.+..+..... ...+|+||+||. .+++++...|. ++
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111110 10 001222233 3677778876654321000 124788887752 35666777898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhh----CCCEEEEEecCCCH
Q 001146 716 FMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSI 755 (1140)
Q Consensus 716 llDEPtsgLD~~~~~~v~~~l~~~~~----~g~tvi~~~H~~~~ 755 (1140)
++||++.-+|.. ...+.+.+.++++ .|.++|++||+|+.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999999998843 3455566655543 27799999999983
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-08 Score=122.39 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred CCccccCccchhhhhHHHHHh--hcCceEeeeeCCCCCcchHHHHHH-HHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 4 DEMIRGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraL--v~~P~ILlLDEpTSgLDs~sa~~v-v~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+...+++|+|++++..+|++| +++|++++|||||+|||+.....+ ...++.+.+..++|++++.|.| +..+++|+
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~ 793 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQ 793 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGT
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcc
Confidence 445678999999999999988 999999999999999999888777 4445555544578888887864 56689999
Q ss_pred eEEecCCeEEEecCcchHH
Q 001146 81 IILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~ 99 (1140)
+..+.+|++...|+.+++.
T Consensus 794 ~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 794 IPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CTTEEEEEEEEEEETTEEE
T ss_pred cceeEeeEEEEEecCCcEE
Confidence 9999999999999887764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-10 Score=128.35 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=79.5
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC-CCCCCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lT 643 (1140)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ..++.+++++|... ..|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 99999999999999999999654 46788887654211 11233456666542 456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 644 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777775432211100 000111122222221 24899999999999999999876
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-08 Score=104.16 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 738 (1140)
.++..+|++|+.+|+++++| ||++|.....++.+.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=104.70 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=84.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 657 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 657 (1140)
++|++++++||||+||||+++.|++...+. .| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999865310 12 23556665542 244555554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH
Q 001146 658 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737 (1140)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~ 737 (1140)
+..++... ...+. +.-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01122 33355555 45999999999 99999876655544433
Q ss_pred HHh---hCCCEEEE-EecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 738 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 738 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
-+. ..+.++++ ++|... ++.+.+|++..+.. +.++...
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk 248 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTK 248 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEEC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeC
Confidence 322 12334444 378653 67777787766654 4566643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-10 Score=125.45 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCC-CCCCCCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~lT 643 (1140)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ..++.+++++|.. ...|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999 99999999999999999999654 46788887654211 1122345566653 2456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 644 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 777774332211100 001112222222222 24899999999999999999976 4543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.44 E-value=5.8e-08 Score=109.63 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=54.7
Q ss_pred cchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 001146 12 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 12 GGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~v 89 (1140)
||||||++||+||..+|++|+|||||+. .+++.++.+ ..+++|++++.|.++ +.+.+|+|++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~-~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHH-HTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHH-hcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 8999999999999999999999999982 345666553 345556777777654 8899999999988864
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-08 Score=107.43 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=39.9
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~ 640 (1140)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 56778999999999999999999999999753 24444443321 112345678888654433
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-08 Score=116.50 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=45.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+|+|+|+++++ |+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 69999999999 99999999999999999999997664 3689999998764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-09 Score=129.37 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=97.6
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+...+++++++.+++|+.++|+||||+|||||+++|++...+. ..|.+.+++.+... ....++++++... -.+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~----~~~ 117 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQG----RRI 117 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHH----HHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchH----HHH
Confidence 3455789999999999999999999999999999999976532 23788888876543 3445788876420 011
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHH-------------------------HHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMF-------------------------IDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.|...-.+....... +.+... ....-+.+|..+..... ..++|+|++
T Consensus 118 ~e~~~~~~~~~~~~r---~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~ 189 (604)
T 3k1j_A 118 VEKYREKAKSQESVK---SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHTCC--------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGG
T ss_pred HHHHHHhhccchhhh---hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCcccccc
Confidence 111111111000000 000000 00011111211111111 136999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 738 (1140)
|++..++....++.+|+|||... |++.....+.+.|++
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 898888888777764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=6e-08 Score=111.92 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=57.8
Q ss_pred Cccc--hhhhhHHHHHhhc----------CceEeeeeCCCCCcchHHHHHHHHHHHHHhH----hc----CCEEEEEecC
Q 001146 10 ISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH----IN----SGTAVISLLQ 69 (1140)
Q Consensus 10 LSGG--QKqRIsIAraLv~----------~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~----~~----~~tiiitIhQ 69 (1140)
+||| ||||++||++|.+ +|++++|||||+|||..+..++.+.+++... +. .++++++-|.
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999999999 9999999999999999999999999988642 22 2567777665
Q ss_pred CCh-hHHhhccce
Q 001146 70 PAP-ETYDLFDDI 81 (1140)
Q Consensus 70 p~~-~t~~~fD~I 81 (1140)
... .+-++.|+|
T Consensus 235 l~~~~~e~L~d~I 247 (413)
T 1tq4_A 235 VCHYDFPVLMDKL 247 (413)
T ss_dssp TTSTTHHHHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 442 255555555
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-06 Score=98.26 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=62.0
Q ss_pred ccCccch-hhhhHHHHHhhcCceEeeeeCCCC---C---cch-HHHHHHHHHHHHHhHhcCCEEEEEecCCC-h------
Q 001146 8 RGISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA-P------ 72 (1140)
Q Consensus 8 rgLSGGQ-KqRIsIAraLv~~P~ILlLDEpTS---g---LDs-~sa~~vv~~L~~~a~~~~~tiiitIhQp~-~------ 72 (1140)
..+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|++++++.+.|||++-|..+ .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3588898 77777 999999999999999999 5 455 55578999999988877889998877653 3
Q ss_pred --------------hHHhhccceEEecCCeE
Q 001146 73 --------------ETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 73 --------------~t~~~fD~I~vL~~G~v 89 (1140)
.+...+|+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998875
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=102.14 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHh----hCCCEEEEEecCCC
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 754 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEP----------tsgLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~ 754 (1140)
|++++|-.+++|....|.+|++||+ +.|.|......+.++|..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677776666666666553 34778999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=91.90 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
...|++|+.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988886643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.8e-07 Score=100.15 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|+.+- +-+++|+++.|.||||||||||+..+++.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 47899999999999999999999999874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-06 Score=106.15 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=60.5
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCCCHHHHHhhceEEEEec
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++. .+.+.+++..++.-
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v 267 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEEC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccc
Confidence 3489999999999999999999999999996 999887777776666554456778885 88764 56777775444433
Q ss_pred CC
Q 001146 770 GG 771 (1140)
Q Consensus 770 gg 771 (1140)
.|
T Consensus 268 ~g 269 (773)
T 2xau_A 268 PG 269 (773)
T ss_dssp CC
T ss_pred cC
Confidence 33
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-07 Score=97.28 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=37.6
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc--cccceEEEeccC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 635 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~ 635 (1140)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3566799999999999999999999999864 5677887765321 111234566664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.9e-06 Score=94.38 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=84.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcC---------ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH---HHH
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE---SLL 649 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e---~l~ 649 (1140)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.++. +....|++.+.+ ...|.. ++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4999999999999999999996431 134688888885432 112234444321 111211 111
Q ss_pred HHHH----cc-CC-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH----HHH-hhCCcEeE
Q 001146 650 FSAW----LR-LS-PEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 716 (1140)
Q Consensus 650 ~~~~----~~-~~-~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia----~al-~~~p~ill 716 (1140)
.... +. .. .... ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1000 00 00 1111 1222334567777777654331122221 233788888988887 554 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999998877653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.1e-08 Score=101.58 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=55.0
Q ss_pred ccCccchhhhhHH-----HHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 8 RGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 8 rgLSGGQKqRIsI-----AraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
..+|||||||++| +++++++|++++|||||+++|..++..+.+.+++... . .| ++ | .+.||.|+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~-~~--~~---h----~~~~d~ii 189 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-E-LH--EA---N----LLNFNLSI 189 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-H-HH--HH---T----TSCCSEEE
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H-HH--hh---c----ccCCCEEE
Confidence 3579999999999 8999999999999999999999999999999876432 2 22 22 2 36788888
Q ss_pred EecC
Q 001146 83 LLSD 86 (1140)
Q Consensus 83 vL~~ 86 (1140)
++++
T Consensus 190 v~~~ 193 (218)
T 1z6g_A 190 INDD 193 (218)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 7753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-07 Score=99.40 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-----------ccccceEEEeccC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 635 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~~v~q~ 635 (1140)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 89999999999999999999997653 35788888876521 1134567888873
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.9e-06 Score=104.31 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=61.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHH-HHHHHHhHhcCCEEEEEecCCChhHHhhccceEE-e
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-L 84 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv-~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v-L 84 (1140)
.+.+|+|++|+..|+++ +.+|++++|||||+|||+.....+. ..++.+++..|+|++++.|.| +..+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 45688999999999998 7899999999999999999888887 455555555688898888875 45566776531 3
Q ss_pred cCCeEEE
Q 001146 85 SDGQIVY 91 (1140)
Q Consensus 85 ~~G~vvy 91 (1140)
.++++-+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.6e-07 Score=96.51 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.2
Q ss_pred EEEEEeE-EEEEecCchhhhcccccCceeeeeCceEEEeC---ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 541 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 541 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|+ +++|. +..++|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4889999 88872 123579999999999 9999999999999999999999854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.6e-06 Score=91.01 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=81.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHHH
Confidence 37777778999999999999999999999888753210 11 12334322 13332221
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
.++......+++.+..+ ..||.+|.+|++.|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111122222222221 1499999999999999999999999999865432
Q ss_pred HHHHHHHHHHHhhC--CCEEEEEec
Q 001146 729 AAIVMRTVRNTVDT--GRTVVCTIH 751 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~--g~tvi~~~H 751 (1140)
.+...++++.++ |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 555666666543 677777755
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-06 Score=104.53 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=61.7
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHH-HHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa-~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
.+|+|.+ ++++|++++++|++++|||||+|+|+... ..+++.++.+++..+.+++++.|.|. .+-..+|++.|+ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence 4566655 59999999999999999999999999874 44667777766544788888877654 455668998887 48
Q ss_pred eEE--EecCcch
Q 001146 88 QIV--YQGPREL 97 (1140)
Q Consensus 88 ~vv--y~G~~~e 97 (1140)
++. +.|+.++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 888 6676544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.6e-06 Score=86.48 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=64.8
Q ss_pred cCccchhhhhHHHHHhhcCce--EeeeeCCCCCc--chHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHHhh
Q 001146 9 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDL 77 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgL--Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~~~ 77 (1140)
..|++|.++...+.....+|+ ++++||||+++ |......+++.|++++++.+.||+++.|..+ ..+-+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358899888888777778999 99999999888 9988889999999988777888888877663 347788
Q ss_pred ccceEEecCCe
Q 001146 78 FDDIILLSDGQ 88 (1140)
Q Consensus 78 fD~I~vL~~G~ 88 (1140)
+|+|++|.+.+
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999997653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=89.16 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe--cCCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 754 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlD-EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~--H~~~ 754 (1140)
..+|+||+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677789999 99999999988888887776543 77888888 7654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.7e-06 Score=92.98 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=59.6
Q ss_pred ccchhhhhHHHHHhh-------cCceEeeeeCCCCCcchHH------------HHHHHHHHHHHhHhcCCEEEEEecCCC
Q 001146 11 SGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPA 71 (1140)
Q Consensus 11 SGGQKqRIsIAraLv-------~~P~ILlLDEpTSgLDs~s------------a~~vv~~L~~~a~~~~~tiiitIhQp~ 71 (1140)
|++|+|++.++++++ .+|+++++||||++||+.. -.+++..|+++++..++||+++-|. +
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~-~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV-Q 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-C
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc-c
Confidence 678999999999999 6899999999999999852 2466777777777778888887664 4
Q ss_pred hhHHhhccceEEecCCeEEEecCcchH
Q 001146 72 PETYDLFDDIILLSDGQIVYQGPRELV 98 (1140)
Q Consensus 72 ~~t~~~fD~I~vL~~G~vvy~G~~~el 98 (1140)
...-..|+++.+...|++++++++..+
T Consensus 287 ~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 287 ARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ---------------CCCCCTTCSEEE
T ss_pred cccccccCCccccCCcceEeecCcEEE
Confidence 344445677788889999999987766
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-05 Score=82.29 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=60.8
Q ss_pred cCccch--hhhhHHHHHhhcC-ceEeeeeCCCCCcchHHH--------HHHHHHHHHHhHhcCCEEEEEecCCCh-----
Q 001146 9 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSSTT--------FQIVNCLRQNIHINSGTAVISLLQPAP----- 72 (1140)
Q Consensus 9 gLSGGQ--KqRIsIAraLv~~-P~ILlLDEpTSgLDs~sa--------~~vv~~L~~~a~~~~~tiiitIhQp~~----- 72 (1140)
..|+++ +++++.+++++.+ |+++++||||++||.... ..+++.|++++++.+.|++++-|.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 356665 5688888999986 999999999999997432 456777888887778888877665442
Q ss_pred -------hHHhhccceEEecCC
Q 001146 73 -------ETYDLFDDIILLSDG 87 (1140)
Q Consensus 73 -------~t~~~fD~I~vL~~G 87 (1140)
.+-..+|.+++|++.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467789999999754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.8e-06 Score=89.06 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=57.0
Q ss_pred cccCccchhhhh-HHHH---HhhcCceEeeeeC--CCCCcchHHHHHHHHHHHHHhHhcCCEEE--EEecCCChhHHhhc
Q 001146 7 IRGISGGQKKRV-TTGE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAV--ISLLQPAPETYDLF 78 (1140)
Q Consensus 7 ~rgLSGGQKqRI-sIAr---aLv~~P~ILlLDE--pTSgLDs~sa~~vv~~L~~~a~~~~~tii--itIhQp~~~t~~~f 78 (1140)
...+|||||+++ ++++ |+..+|+||+||| ||..+|... ++.++++.....++++ +++.|.+ + ....
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~ilgti~vsh~~-~-~~~v 154 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTIILGTIPVPKGK-P-LALV 154 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCEEEECCCCCSS-C-CTTH
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEEEEEeecCCCC-c-hHHH
Confidence 345999999999 4455 6899999999999 788888854 4555554443334443 3332333 3 4677
Q ss_pred cceEEecCCeEEEec
Q 001146 79 DDIILLSDGQIVYQG 93 (1140)
Q Consensus 79 D~I~vL~~G~vvy~G 93 (1140)
|+|..+.+|++++--
T Consensus 155 d~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 155 EEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHTTCCSEEEECC
T ss_pred HHHeecCCcEEEEeC
Confidence 999999999999854
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.9e-06 Score=91.00 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=41.2
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
...||||||||++|||+++. +++|||||+|||+.. ..+++.|+ . . .++|+.||
T Consensus 96 ~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~---~-~-~~vI~Vi~ 148 (270)
T 3sop_A 96 KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS---K-V-VNIIPVIA 148 (270)
T ss_dssp HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---T-T-SEEEEEET
T ss_pred HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---h-c-CcEEEEEe
Confidence 35699999999999999875 999999999999965 34444443 2 3 67777655
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.4e-07 Score=111.68 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC-CCCCCCH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 644 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lTv 644 (1140)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+..++|... ..|...+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 588999999999 99999999999999999999654 35678888664321 01122334455432 3344444
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 645 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 645 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
.|++......+.. .....++.++.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 4544321111100 00112223333333332 3788888888888888889987 788764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=6.6e-06 Score=86.23 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH-HHHhhceEEEEe
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 768 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~v~~l~ 768 (1140)
.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888754433 3345666555555544332 356888888875421 246688888885
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=85.99 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=50.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCC--CcchHHH---HHHHHHHHHHhHhcCCEEEEEecCCC
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPA 71 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTS--gLDs~sa---~~vv~~L~~~a~~~~~tiiitIhQp~ 71 (1140)
....+|+||+||+ ++++.+|+++++||||+ ++|..+. .++++.|+++++..++|||++-|...
T Consensus 115 ~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 115 LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4567999998876 68889999999999999 9997544 78889999888777888888766443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.4e-05 Score=83.27 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.68 E-value=8.6e-06 Score=91.20 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=54.0
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc-----cceEEEe-ccCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQND 636 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~ 636 (1140)
++++++.+++|++++++||||+||||++..|++.... ..|+|.+.+.+.... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999996432 136777776654321 12 4457888 6654
Q ss_pred CCCCCCCHHHHHH
Q 001146 637 IHSPFVTIYESLL 649 (1140)
Q Consensus 637 ~~~~~lTv~e~l~ 649 (1140)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444444445443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=8.4e-05 Score=85.08 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEec
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 751 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H 751 (1140)
.++.++++..+++..+.+|+++++.-..+..|... ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445443 34556666665555 57777766
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.5e-05 Score=95.84 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCccccCccchhhhhHHHHHh--hcCceEeeeeCC---CCCcchHHH-HHHHHHHHHHhHhcCCEEEEEecCCChhHHhh
Q 001146 4 DEMIRGISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDL 77 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraL--v~~P~ILlLDEp---TSgLDs~sa-~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~ 77 (1140)
+....++|+|+++|+.+|+++ +++|++++|||| ||+||..+. ..+++.+++ .+.|++++.|.+ +..++
T Consensus 630 d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~ 703 (765)
T 1ewq_A 630 DDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTAL 703 (765)
T ss_dssp -----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTC
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHh
Confidence 445578999999999999999 999999999999 999998764 567777764 467888877764 34444
Q ss_pred ccceEEecCCeEEEecC
Q 001146 78 FDDIILLSDGQIVYQGP 94 (1140)
Q Consensus 78 fD~I~vL~~G~vvy~G~ 94 (1140)
+ .--+.++++.....
T Consensus 704 ~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 704 G--LPRLKNLHVAAREE 718 (765)
T ss_dssp C--CTTEEEEEEEEECC
T ss_pred h--hhcceEEEEEEEEc
Confidence 3 21233455544433
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.58 E-value=2.6e-05 Score=79.80 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999 99999999999999999998743
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=3e-05 Score=86.11 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=48.8
Q ss_pred cccCccchhhhhHHHHHhhcCce--EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHH-h
Q 001146 7 IRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETY-D 76 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~-~ 76 (1140)
.+.|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++..+..+.|+++..|-.. .++. +
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEE 271 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence 35688 999999999999999 99999 99999996542 2333334556655545221 1222 2
Q ss_pred hccceEEecCCeE
Q 001146 77 LFDDIILLSDGQI 89 (1140)
Q Consensus 77 ~fD~I~vL~~G~v 89 (1140)
.-+.|..+..|+.
T Consensus 272 ~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 272 LGIPVKFIGVGEA 284 (302)
T ss_dssp HCCCEEEEECSSS
T ss_pred HCCCEEEEeCCCC
Confidence 3346677776654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.6e-06 Score=89.78 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=43.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHh---cCCcCceEEEEEE--------EcCcccCc----ccccceEEEeccCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCEQND 636 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~q~~ 636 (1140)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7654 3467777 77776532 23445667777643
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=83.76 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=34.5
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh---CCCEEEEEecCCC
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 754 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~---~g~tvi~~~H~~~ 754 (1140)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88877777777765544 5788999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=1.9e-05 Score=97.69 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=70.9
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 650 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 650 (1140)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..... ...++.+.+..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643211123555 34433221 1112223333332111100 0
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHH
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 730 (1140)
. .....|+. |...++ .......-..+..++++| |+.|+|+.+..
T Consensus 74 -------------------------~-~~nliDTp----G~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 -------------------------H-RVFLLDAP----GYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -------------------------E-EEEEEECC----CSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -------------------------E-EEEEEeCC----CccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0 00122221 111121 112222335678899999 99999988773
Q ss_pred HHHHHHHHHhhCCCEEEEEecCCC
Q 001146 731 IVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 731 ~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
. ++.+.+.+.++|++.|..+
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHccCCEEEEecCCc
Confidence 3 3333345888889999765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.2e-06 Score=97.05 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=63.1
Q ss_pred ccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH---hcCC-----EEEEEecCCChhHHhhcc
Q 001146 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSG-----TAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 8 rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~---~~~~-----tiiitIhQp~~~t~~~fD 79 (1140)
..+|||| |||+|| +++|++ |+|||+.+...+.+.+++..+ ..|+ ||++.-|.. + ...+|
T Consensus 257 ~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl--~-~~iad 323 (438)
T 2dpy_A 257 TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ--Q-DPIAD 323 (438)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS--C-CHHHH
T ss_pred HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc--c-chhhc
Confidence 4589999 999999 788887 999999999999999987544 1243 455444433 3 67899
Q ss_pred ceEEecCCeEEEecCcchHH
Q 001146 80 DIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 80 ~I~vL~~G~vvy~G~~~el~ 99 (1140)
++++|.+|+++..|+++++.
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHSSEEEEECHHHHHTT
T ss_pred eEEEEeCcEEEEeCCHHHcc
Confidence 99999999999999987764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.5e-05 Score=80.55 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.9e-05 Score=78.46 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.8
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+|++++|+||||||||||+++|++..++ ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999986542 1345554433
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=81.53 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=80.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHHHH
Confidence 37777778999999999999999999998888642110 01 123444322 2332222
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
. ++......+++.+..+ | ...||.+|++|+..|...+.++++++.|+|...
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred H------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 1 1111111122222211 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHhhC-CCE--EEEEec
Q 001146 729 AAIVMRTVRNTVDT-GRT--VVCTIH 751 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~-g~t--vi~~~H 751 (1140)
...+.+.++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33455566666543 666 777766
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=80.27 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHhhC-CC--EEEEEecCCCHHHHHhhceEE
Q 001146 694 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~--~~p~illlDEPtsgLD~~~-~~~v~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 5566666 68999998 7888876 56677777777653 43 5666677654 4556666554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00051 Score=76.15 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH----------HHHHHHHHHHHHhh----CCCEEEEEecCCC---HHH
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 757 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~----------~~~~v~~~l~~~~~----~g~tvi~~~H~~~---~~~ 757 (1140)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777788888899999999998776532 22234444433321 2356778888753 333
Q ss_pred HHhhceE
Q 001146 758 FEAFDEL 764 (1140)
Q Consensus 758 ~~~~d~v 764 (1140)
.+.|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4444443
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=9.2e-05 Score=78.66 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=55.2
Q ss_pred Cccch-hhhhHHHHHhhc-------CceEeeeeCCCCCcchH-------H-----HHHHHHHHHHHhHhcCCEEEEEecC
Q 001146 10 ISGGQ-KKRVTTGEMMVG-------PALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQ 69 (1140)
Q Consensus 10 LSGGQ-KqRIsIAraLv~-------~P~ILlLDEpTSgLDs~-------s-----a~~vv~~L~~~a~~~~~tiiitIhQ 69 (1140)
.++++ ++++..+++++. +|++++|||||++||.. + ..++++.|++++++.+.|||++-|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34444 444667777776 99999999999999984 2 2368888888887778898887664
Q ss_pred CCh---hHHhhccceEEecCCe
Q 001146 70 PAP---ETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 70 p~~---~t~~~fD~I~vL~~G~ 88 (1140)
.+. .+-..+|.+++|++|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 332 3667789999998754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=9.4e-06 Score=90.62 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=34.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcch
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 42 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs 42 (1140)
....+|||||||++||++++.+|+||+|||||+.+|.
T Consensus 173 ~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 173 CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3567999999999999999999999999999999986
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.1e-05 Score=82.65 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.7
Q ss_pred ceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 573 vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-+...++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445589999999999999999999999987 25677877764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=2.6e-05 Score=81.28 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE--EEcCccc
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 620 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 620 (1140)
..++.++..++|++++|+|||||||||++++|++.... .|.+ .++|.++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCchh
Confidence 45667777899999999999999999999999986531 2444 7777654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=8.1e-05 Score=93.17 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=62.2
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHH-HHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~v-v~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
..|+|++ |++.+...+++|++++|||||+|+|+.....+ .+.++.+.+..+.+++++.|.+. ..+.+|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence 3555554 55555556899999999999999998766665 55566655435788888888764 45689998888888
Q ss_pred eEEEecCcchH
Q 001146 88 QIVYQGPRELV 98 (1140)
Q Consensus 88 ~vvy~G~~~el 98 (1140)
++.+....+++
T Consensus 746 ~~~~~~~~~~l 756 (800)
T 1wb9_A 746 HLDALEHGDTI 756 (800)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEcCCcE
Confidence 88776544333
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.001 Score=75.31 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999998886
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=83.14 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=39.1
Q ss_pred cccCccchhhhhHHHHHhhcCce--EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
...|| |||++|||+|..+|+ +|+|| ||+|||+.+.. ++.....+.|+++..|
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK 312 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec
Confidence 35688 999999999999999 99999 99999997542 2223334555555445
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.33 E-value=3.4e-05 Score=88.04 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999853
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00016 Score=78.45 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred hhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 15 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 15 KqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
.-|++||++|..+|+++++|||| |..+...++ +. + ..|.+|+++.|... ..+.+|++++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETAL---RA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-H-HTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-H-ccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 887765443 32 3 35789988888754 6788999998864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=77.33 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.24 E-value=1.3e-05 Score=83.99 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=56.4
Q ss_pred CccchhhhhHHHH---HhhcCceEeeeeCCCCCc----chHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 10 ISGGQKKRVTTGE---MMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 10 LSGGQKqRIsIAr---aLv~~P~ILlLDEpTSgL----Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
+.|.+.+|-..+. +|+.+|++++|||||+|| |.....++.+.++++....+.|++++.| ...++.+.+|+|+
T Consensus 121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH-dl~~~~~~~d~i~ 199 (207)
T 1znw_A 121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR-RLESACAELVSLL 199 (207)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC-CHHHHHHHHHHHH
Confidence 4455554444443 788999999999999998 7778889999988876555777777644 5668889999999
Q ss_pred Eec
Q 001146 83 LLS 85 (1140)
Q Consensus 83 vL~ 85 (1140)
+|.
T Consensus 200 ~l~ 202 (207)
T 1znw_A 200 VGT 202 (207)
T ss_dssp C--
T ss_pred Hhc
Confidence 985
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00074 Score=75.87 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=75.3
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCC-cCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 653 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 653 (1140)
+-+++|+++.|.||+|+|||||...++... .+.. .| | ....+.|+.-+..+. ..+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~g-----g-------~~~~vlyi~~e~~~~----~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KG-----G-------LSGKAVYIDTEGTFR----WERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GT-----C-------CSCEEEEEESSSCCC----HHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cC-----C-------CCCeEEEEECCCCCC----HHHHHHHHHH
Confidence 578999999999999999999999887631 1100 00 0 012234444332211 1111111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH-HHHHHHHHHHHh---hCCcEeEEeCCCCCCCH---
Q 001146 654 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--- 726 (1140)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG-qrqRv~ia~al~---~~p~illlDEPtsgLD~--- 726 (1140)
+. .+. +++++.+-.. +..+.. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~~~------------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIYYI------------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEEEE------------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 1222211110 112333 345677788888 57999999999976532
Q ss_pred -----HH----HHHHHHHHHHHhh-CCCEEEEEecC
Q 001146 727 -----RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 752 (1140)
Q Consensus 727 -----~~----~~~v~~~l~~~~~-~g~tvi~~~H~ 752 (1140)
.. ..+++..|+++++ .+.+||++.|-
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 2345555666654 48899988774
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=2.5e-05 Score=88.42 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH-hcCC-----EEEEEecCCChhHHhhccc
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSG-----TAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~-~~~~-----tiiitIhQp~~~t~~~fD~ 80 (1140)
+..+|+|| |||++| +.+|++ |+|||+.....+.+.+++..+ .+|+ ||++.-|... -..+|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45689999 999999 578776 999999999999998877543 3454 5555444333 567899
Q ss_pred eEEecCCeEEEecCcchHH
Q 001146 81 IILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~ 99 (1140)
+.+|.+|+++..|+.+++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999887764
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=75.29 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++++|+|+|||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999865
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=5.5e-05 Score=88.91 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=49.3
Q ss_pred hCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE-EecCCEEEEECCCCc
Q 001146 710 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLGR 781 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~-~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~-l~~gg~~~~~g~~~~ 781 (1140)
.+|++|++||+..-.+. .+...+...+..+.+.|+.+|+++|.+..++..+.+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887764 6677888888888778899999999864332112222221 23 367777777763
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=76.80 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=92.0
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+.+.+-+++|+++.|.|++|+|||||..-++...... .| ..+.|+.=+ ++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHHHH
Confidence 367777779999999999999999999998887532100 00 012222211 2222111
Q ss_pred H-H-HHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh--hCCcEeEEe
Q 001146 649 L-F-SAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMD 718 (1140)
Q Consensus 649 ~-~-~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~--~~p~illlD 718 (1140)
. + +.....+ ...+.++. .++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 1 0 1111100 11233332 2233333333211111 111 124676665 34566665 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHhhC-CCEEEEEecCC-----------CH-------HHHHhhceEEEEec
Q 001146 719 EPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQP-----------SI-------DIFEAFDELFLMKR 769 (1140)
Q Consensus 719 EPtsgLD~----------~~~~~v~~~l~~~~~~-g~tvi~~~H~~-----------~~-------~~~~~~d~v~~l~~ 769 (1140)
..+.-.+. .....+.+.|+.++++ +.+||+++|-. .. .+.+.+|.|++|.+
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764332 1224667778887754 89999998832 10 23456788888864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00019 Score=73.89 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=69.65 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=25.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
+++.++.+.+| +++|+|||||||||++++|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455666665 99999999999999999986
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00019 Score=75.02 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=46.0
Q ss_pred cccCccchhhh-hHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH
Q 001146 7 IRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 57 (1140)
Q Consensus 7 ~rgLSGGQKqR-IsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~ 57 (1140)
...+||||||| +.++++++.+|+++++||||||||......+.+.+.+...
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 44689999999 8999999999999999999999999999999999987654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.03 E-value=6.5e-05 Score=84.16 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=43.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeee--------------CceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+.|+|+++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 132 ~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 45678888887753 233566 89999999999999999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.01 E-value=3.4e-05 Score=85.95 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred eeeeeCceEEEeCce------EEEEeCCCCCChHHHHHHHhcCCc
Q 001146 567 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~------~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
+..|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445777777777666 999999999999999999998643
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=71.69 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.+|++++|+|||||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 345566544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=75.29 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+...+-+++++++--+.....+.+++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445555542 33578999999999976 68777665444444443333456666655554444445543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=80.33 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00012 Score=76.30 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.++|++++|+||||||||||++.|++...+. .|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 5789999999999999999999999864311 2445554433
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=1.3e-05 Score=84.28 Aligned_cols=63 Identities=6% Similarity=0.107 Sum_probs=52.1
Q ss_pred cccCccch----hhhhHHHHHhhcCceEeeeeCCCCC-------cchHHHHHHHHHHHHHhHhcCCEEEEEecC
Q 001146 7 IRGISGGQ----KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69 (1140)
Q Consensus 7 ~rgLSGGQ----KqRIsIAraLv~~P~ILlLDEpTSg-------LDs~sa~~vv~~L~~~a~~~~~tiiitIhQ 69 (1140)
...+|+|| +||+++|++++.+|+++++||||++ ||+.++.++.+.+++....+|.|++.+.|+
T Consensus 87 ~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 87 VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34588886 5799999999999999999999999 999999899998876544567777766664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0011 Score=76.58 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCcEeEEeCCC-CC--CCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 702 LTIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPt-sg--LD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
-+++.+...+++++++|+|- .+ .|+....++.+.++.+......+++.+|.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 34555555689999999997 34 78877777766655543334455555553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00032 Score=70.80 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00065 Score=75.51 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00016 Score=80.26 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=39.5
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCC-cchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSg-LDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
..+++|||||||+.+||+++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 45789999999999999985 9999999985 999763 4444433323445555433
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=76.55 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=45.8
Q ss_pred HHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCe
Q 001146 19 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 19 sIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~ 88 (1140)
+||++|..+|+||++|||| |..+. +.+.+.+ ..|.|+++++|..+ ....+|+|++|..|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~--~~~~~dRli~l~~~~ 247 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTS--AAKTIDRVVDVFPAE 247 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSS--HHHHHHHHHHTSCHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccCh--HHHHHHHHhhhcCcc
Confidence 8999999999999999999 66554 3333333 45788888888665 348899999996653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00023 Score=85.23 Aligned_cols=42 Identities=38% Similarity=0.472 Sum_probs=33.4
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEE-EcCcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGYP 619 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 619 (1140)
.+++|++++|+|+||||||||+++|+|...+. .| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 47899999999999999999999999976432 33 464 66654
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0024 Score=67.14 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777777999999999 56678888999999875
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.019 Score=64.89 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55543 4689999999999999999999988765
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=64.53 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=68.54 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=24.9
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999985
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=63.02 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.7
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh--CCCEEEEEec
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 751 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~tvi~~~H 751 (1140)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555444443322 1358888888
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=70.29 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=26.2
Q ss_pred eeCceEEEe---CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 570 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 570 L~~vs~~i~---~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
|.++|+.+. +|.+++|.||+||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777776 899999999999999999999988543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00066 Score=81.81 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=38.7
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+++++++++ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3577788877 899999999999999999999998654 33677776664
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=75.04 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCc------C----ceEEEEEEEcCccc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGNITISGYPK 620 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~ 620 (1140)
-.++|+|+||+|||||+|.|+|... + ++..|.+.++|.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3689999999999999999999632 1 12357888888753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00056 Score=77.46 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999854
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=65.94 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0064 Score=71.14 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.6
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 666666789999999999999999999877764
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0049 Score=67.59 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.00031 Score=77.37 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=31.8
Q ss_pred cccCccchhhhhHHH--HHhhcCceEeeeeCCCCCcchHH
Q 001146 7 IRGISGGQKKRVTTG--EMMVGPALALFMDEISTGLDSST 44 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIA--raLv~~P~ILlLDEpTSgLDs~s 44 (1140)
.+.+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 457999999999998 666 899999999999999854
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0031 Score=64.64 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 689999998887 6799999999999999999874
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.26 E-value=0.00035 Score=85.29 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=62.4
Q ss_pred cchhhhhHHHHHhhcCceEeeeeCC------CCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHHhhc
Q 001146 12 GGQKKRVTTGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDLF 78 (1140)
Q Consensus 12 GGQKqRIsIAraLv~~P~ILlLDEp------TSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~~~f 78 (1140)
|..++++.++.+...+|+++++||| |+|||.....++.+.+++.....++.+++.++|-. ..+.+..
T Consensus 131 ~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 131 GISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp CCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 3445666666667778999999999 99999999999999998865544444444333222 2233333
Q ss_pred c-----ceEEecCCeEEEecCcchHHH
Q 001146 79 D-----DIILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 79 D-----~I~vL~~G~vvy~G~~~el~~ 100 (1140)
| .|+|++++..+..|+.+++.+
T Consensus 211 ~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 211 DPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hhcCCceEEEecchhhcCcccHHHHHH
Confidence 2 378999999999999776654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0018 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.263 Sum_probs=26.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEE
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITI 615 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~ 615 (1140)
+.+++|+|||||||||+.++|++.... -...|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 568999999999999999999975321 123455554
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0019 Score=66.00 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.009 Score=66.91 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=33.9
Q ss_pred hhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 709 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 709 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
..+|++|++||+.. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999866 2344677788888887777777788877754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0067 Score=64.61 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=49.0
Q ss_pred Cccchhhh-hHHHHHhh--cCceEeeeeCCCCCcchH-------H-----HHHHHHHHHHHhHhcCCEEEEEecCCChh-
Q 001146 10 ISGGQKKR-VTTGEMMV--GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 73 (1140)
Q Consensus 10 LSGGQKqR-IsIAraLv--~~P~ILlLDEpTSgLDs~-------s-----a~~vv~~L~~~a~~~~~tiiitIhQp~~~- 73 (1140)
.++.+..+ +.-.++++ .+|+++++||||+.+|.. + ...+++.|++++++.+.||+++-|..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 44444332 33344444 489999999999999975 3 24567777777777788888876533321
Q ss_pred -----------------HHhhccceEEecCCe
Q 001146 74 -----------------TYDLFDDIILLSDGQ 88 (1140)
Q Consensus 74 -----------------t~~~fD~I~vL~~G~ 88 (1140)
+-..+|.+++|++|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 112789999998653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.002 Score=67.07 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999998754
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.023 Score=64.49 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.1
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++..-+.|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455679999999999999999998753
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.025 Score=63.21 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred eeCce-EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5789999999999999999999988774
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0011 Score=75.44 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34678888877 999999999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=67.05 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0038 Score=70.74 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++.+++|+|++|||||||+|.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999854
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0012 Score=73.67 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.8
Q ss_pred eeeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCC
Q 001146 569 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 569 iL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++++++.+++|+. ++|+||+||||||+.++|++..
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 68888899999998 9999999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0036 Score=64.90 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0015 Score=67.59 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.9
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46889999988885 689999999999999999874
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.011 Score=59.86 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.03 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+..-+.|.||+|+|||||.+.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445889999999999999999874
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0063 Score=62.10 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999998754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0067 Score=61.76 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0068 Score=60.39 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0056 Score=63.97 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=26.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.+++|.+++|+|++||||||+.+.|++...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999999988653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0067 Score=61.21 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISG 617 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g 617 (1140)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987532 122235555544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=59.81 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=39.2
Q ss_pred HhhcCceEeeeeCCCC-CcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChh
Q 001146 23 MMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 73 (1140)
Q Consensus 23 aLv~~P~ILlLDEpTS-gLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~ 73 (1140)
..+.+|++|+||||++ ++|......+.+.+.... ..++++|++-|++..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChhH
Confidence 4456899999999996 899988877777776643 4678888888877654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.13 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0057 Score=63.35 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++|+|+|||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0012 Score=66.57 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=21.3
Q ss_pred cCccchhhhhHHHHHhhcCceEe
Q 001146 9 GISGGQKKRVTTGEMMVGPALAL 31 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~IL 31 (1140)
++||||||||+|||+++++|+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGC
T ss_pred CcCCCCCcEEEEEecccCCCccC
Confidence 59999999999999999999873
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0028 Score=68.01 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=47.6
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceEEe
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIILL 84 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~vL 84 (1140)
....+|||||||+++ ++++.+|++++||||...+|.. +.+. .+.+|+++.|. .....+. .+++
T Consensus 113 ~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~~~r~~~r~~--- 176 (245)
T 2jeo_A 113 EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVRLSRRVLRDV--- 176 (245)
T ss_dssp EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHHHHHHHHHHT---
T ss_pred ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHHHHHHHHHHH---
Confidence 346799999999988 6888999999999988877752 2222 25677777553 2233333 2333
Q ss_pred cCCeEEEecCcchHHHH
Q 001146 85 SDGQIVYQGPRELVLEF 101 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~~ 101 (1140)
.+|+ +.+++.+.
T Consensus 177 ~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 177 RRGR-----DLEQILTQ 188 (245)
T ss_dssp C--------CHHHHHHH
T ss_pred HcCC-----CHHHHHHH
Confidence 5564 45566543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.057 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVL 600 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l 600 (1140)
+-+++| ++.|.||+|+|||||.--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999994433
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.11 Score=58.68 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0023 Score=73.23 Aligned_cols=87 Identities=8% Similarity=-0.089 Sum_probs=60.5
Q ss_pred cCccchhhhhHHHHHhh-cCceEeeeeC---CC------CCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 9 GISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv-~~P~ILlLDE---pT------SgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
.+|+|++||..+++++. .+|++++||| |+ ++||......+.+.++++.+..+.++++.- +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 46778899998888775 5999999999 54 689999999999999876655466666543 34 4667777
Q ss_pred cceEEecCCeEEEecCcchHH
Q 001146 79 DDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 79 D~I~vL~~G~vvy~G~~~el~ 99 (1140)
|.+.++++ ++..|+.+||.
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHH--HhcccchhHhh
Confidence 88877764 55566666654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.005 Score=71.12 Aligned_cols=46 Identities=24% Similarity=0.095 Sum_probs=35.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
+++++. +|++++++|+||+||||++..|++..... .+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 567777 89999999999999999999999854321 34566655543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0022 Score=72.55 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.4
Q ss_pred eeeeeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467888888899998 9999999999999999999854
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.1 Score=62.06 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+..-+++|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 555555689999999999999999999877654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|.++.|.|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0094 Score=63.02 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0096 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.025 Score=57.83 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+.+++++||.-- +|+. .++.++++++.|..||++.+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999654 6643 35667777777999999999 55577888999998775
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.00081 Score=69.03 Aligned_cols=82 Identities=6% Similarity=-0.027 Sum_probs=56.9
Q ss_pred ccchhhhhHHHH------HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 11 SGGQKKRVTTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 11 SGGQKqRIsIAr------aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
|+|++||+.++. +++.+|+...+|| +||...... .+.++... ..+.++|.+-|.--.++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999998887 9999999988994 899877766 77776643 3456788775541347788899999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++.+|+.+-+.
T Consensus 169 ~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HCGGGSCC-------
T ss_pred hCCcEEEeecCCchh
Confidence 999999999987765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0099 Score=63.27 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999874
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=67.53 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.0
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-..++.|..++|+|+||+|||||+|.|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345678889999999999999999999986
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0085 Score=64.63 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.7
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44555555555 8899999999999999999854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0063 Score=65.57 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=33.7
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
++++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 344444 5678899999999999999999999875432 234556543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0072 Score=69.82 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.6
Q ss_pred cCccchhhhhHHHHHhhcCce---EeeeeCCC-CCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 9 GISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~---ILlLDEpT-SgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
+++++.+||++|||+++++|+ +|++|||| +|||+... .+++.| . .+.++|+.++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~--~~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL---H--EKVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHH---T--TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHH---h--ccCcEEEEEE
Confidence 467888999999999999999 99999999 69998653 444444 2 2566666555
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0049 Score=66.15 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=37.1
Q ss_pred cccCccchhhhhHHHHHh-hcCceEeeee----CCCCCcchHHHHHHHHHHHHHhH
Q 001146 7 IRGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 57 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraL-v~~P~ILlLD----EpTSgLDs~sa~~vv~~L~~~a~ 57 (1140)
...+|| |+ ++| +.+|++++|| |||+|||..+...+.+.+++...
T Consensus 150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 345788 66 677 9999999999 99999999999888888877543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=59.54 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.015 Score=59.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=59.72 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0096 Score=65.64 Aligned_cols=33 Identities=33% Similarity=0.228 Sum_probs=28.7
Q ss_pred eC-ceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~-vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++ +++..+ |++++++|++|+||||++..|++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 777766 9999999999999999999999854
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.049 Score=56.30 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+.+++++||.-- +|.. . ++.++++++.|..||++-+ .++.++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999976 6643 2 3667777777999999999 77788899999999886
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.019 Score=58.36 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.019 Score=57.32 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChHHHHHHH
Q 001146 582 LTALMGVSGAGKTTLMDVL 600 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l 600 (1140)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.019 Score=58.12 Aligned_cols=25 Identities=40% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
..+..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.023 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.022 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=62.62 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.6
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.025 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+|.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.023 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.19 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++-.=+.|-||+|+|||+|.+++++..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 333458899999999999999999854
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.23 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++-.=+.|.||+|+|||+|.+++++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 333448999999999999999999854
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.025 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.027 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCChHHHHHHHhc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.042 Score=60.44 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=32.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888777 8899999999999999999999765
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.031 Score=63.77 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=44.1
Q ss_pred hhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 17 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 17 RIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+.+|+++|..+|+++++|||| |..+. ..+++. + ..|.++++++|.. +....+|+++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 679999999999999999999 66443 334443 3 3577887777763 4778889987774
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.24 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+-.=+.|.||+|+|||+|.++|++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 33348999999999999999999854
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.055 Score=62.10 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=50.6
Q ss_pred hhhhHHHHHhh--cCceEeeeeCCCCCcchHHH------------HHHHHHHHHHhHhcCCEEEEEecCCC---------
Q 001146 15 KKRVTTGEMMV--GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA--------- 71 (1140)
Q Consensus 15 KqRIsIAraLv--~~P~ILlLDEpTSgLDs~sa------------~~vv~~L~~~a~~~~~tiiitIhQp~--------- 71 (1140)
++++..+++++ .+|+++++||||+.+|+... .++++.|++++++.+.|||++-|-.+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999996433 57888899988888999999877621
Q ss_pred ---------hhHHhhccceEEecCCe
Q 001146 72 ---------PETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 72 ---------~~t~~~fD~I~vL~~G~ 88 (1140)
..+-..+|.++.|.+|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 12345578888887664
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.025 Score=56.89 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+.|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.019 Score=63.41 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=36.3
Q ss_pred CccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 10 LSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
++..+|||++|||+++.+|+.++| +||+.+...+++.+++..+..+.|+++..|
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh 256 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTK 256 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 566779999999999999994444 455555555566666555444555555545
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.025 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999753
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|+|++|||||||++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999874
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.11 Score=50.37 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 5777777778777766433456677777654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.024 Score=61.62 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.019 Score=66.21 Aligned_cols=71 Identities=7% Similarity=0.015 Sum_probs=51.6
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
....+|+|||||+++|++|...|.|+++ +.+|..++ ..++.+++..+..+.+++.+-......+-+++|.|
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3456999999999999999999999999 99998777 56666665555555565554333444555555554
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.029 Score=58.38 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.031 Score=57.54 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.22 Score=66.65 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 6999999999999999999999998763
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.25 Score=56.12 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.....-+.| +.|-||+|+|||+|.+++++..
T Consensus 175 ~~~gi~~prG--vLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 175 ESLGIAQPKG--VILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp HHHTCCCCCC--EEEESCSSSSHHHHHHHHHHHH
T ss_pred HhCCCCCCCc--eEEeCCCCCCHHHHHHHHHHhh
Confidence 3333333445 8899999999999999999854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.015 Score=60.66 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|.|++||||||+++.|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.2 Score=57.45 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356689999999999999999998653
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.2 Score=52.23 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.9
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC---------CCHHHHHhhceEEEEe
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ---------PSIDIFEAFDELFLMK 768 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~---------~~~~~~~~~d~v~~l~ 768 (1140)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 555555556679999999999 8888899999999885
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.037 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.3 Score=56.32 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=42.3
Q ss_pred HHHHhhCCcEeEEeCCCC----------CCCHHHHHHHHHHHHHHh----hCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 705 AVELVANPSIIFMDEPTS----------GLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 705 a~al~~~p~illlDEPts----------gLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..|-...|.|+|+||--+ +-|......+.++|..+- ..+..||.+|++|.. .|.-+ +..
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpAl-lRp- 340 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPAL-LRP- 340 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTTT-TST-
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHHH-hCC-
Confidence 334446799999999753 224444555566666553 125689999998862 24433 232
Q ss_pred C---EEEEECCCCc
Q 001146 771 G---QEIYVGPLGR 781 (1140)
Q Consensus 771 g---~~~~~g~~~~ 781 (1140)
| +.++.+.|+.
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 3 3577787764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.014 Score=59.86 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.0036 Score=64.81 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHH-HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 20 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 20 IAr-aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+++ +++.+|++++|||+||++|+.++..|.+.|.+.... +.++ | ++ +.||.|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a---~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESS---K--EP-GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGG---G--ST-TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHh---h--cc-CCceEEEECC
Confidence 565 789999999999999999999999999998764432 1111 3 33 7899999876
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.033 Score=56.68 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.04 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|..+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.032 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=17.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.12 Score=50.52 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=33.5
Q ss_pred HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCE-EEEEecCCCh
Q 001146 23 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPAP 72 (1140)
Q Consensus 23 aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~t-iiitIhQp~~ 72 (1140)
+++.+|++|+||||++ +|...+..+.+.++.... ++++ +|++-|.+..
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4567899999999998 554447677787776554 4555 7777665543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.042 Score=59.72 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.038 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.039 Score=56.14 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.046 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998853
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.043 Score=54.11 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.045 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.084 Score=53.76 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=27.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+++.-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45655444 467899999999999999999998653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.046 Score=57.59 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++.++.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.049 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.043 Score=55.36 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.047 Score=56.37 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.054 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.052 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.73 Score=62.51 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 371 LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999887765
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.15 Score=59.72 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=59.1
Q ss_pred cCccchhhhhHHHHHhh--cCceEeeeeCCCCCcchH--------HHHHHHHHHHHHhHhcCCEEEEEecC---------
Q 001146 9 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDSS--------TTFQIVNCLRQNIHINSGTAVISLLQ--------- 69 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv--~~P~ILlLDEpTSgLDs~--------sa~~vv~~L~~~a~~~~~tiiitIhQ--------- 69 (1140)
++|++|.+ +.+|.++ .+|+++++|+++.-.++. .-..+.+.|+.+|++.+.+|++.-|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 57888876 5677776 689999999999987431 22567888999898888888776551
Q ss_pred --CCh-------hHHhhccceEEecCCeE
Q 001146 70 --PAP-------ETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 70 --p~~-------~t~~~fD~I~vL~~G~v 89 (1140)
|.. ++-..+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 432 56778999999987653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.055 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.048 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.049 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.055 Score=56.34 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.052 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.051 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.1 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=92.55 E-value=0.047 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.064 Score=57.86 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.062 Score=55.34 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.11 Score=58.70 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=43.2
Q ss_pred hcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCeEEEecCcc
Q 001146 25 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE 96 (1140)
Q Consensus 25 v~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~vvy~G~~~ 96 (1140)
.++|+|+++|||++ ||..+...+.+.+.+.. .++++|++-|++..-.-. +.+...++...+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~~ 194 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAPS 194 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCCC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCcC
Confidence 56899999999999 99998888888887632 456777777776531111 23455667766654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.053 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.061 Score=54.74 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1 Score=60.34 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||.--++.
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999877754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.053 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.053 Score=55.17 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.053 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.055 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.05 Score=57.05 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.055 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.055 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=92.38 E-value=0.051 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.064 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.071 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.068 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999974
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.067 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.067 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|+|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.054 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.058 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.068 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=92.19 E-value=0.059 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998854
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.061 Score=54.35 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.13 E-value=0.049 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.++|+|++|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.07 Score=58.90 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=22.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 59999999999999999999853
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.058 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.065 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.29 Score=51.66 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=49.5
Q ss_pred hHHHHHhh--cCceEeeeeCCCCCc--chHHHHHHHHHHHHHhHhcCCEEEEEecCCChh-------HHhhccceEEecC
Q 001146 18 VTTGEMMV--GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE-------TYDLFDDIILLSD 86 (1140)
Q Consensus 18 IsIAraLv--~~P~ILlLDEpTSgL--Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~-------t~~~fD~I~vL~~ 86 (1140)
....+.++ .+|+++++||+|+.+ |.....+.+..+.+.+++.+.||+++.|..+.. +.+.+|.|+.|..
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33334444 479999999999988 554556777888887877888999887765532 4577899999964
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.068 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.071 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.062 Score=58.46 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.066 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.067 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.066 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.061 Score=60.93 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.7
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=91.88 E-value=0.069 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.066 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.071 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.75 E-value=1.4 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.+++++|++|+||||++.-|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.07 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.72 E-value=0.05 Score=59.72 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.068 Score=61.47 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCcEeEEeCCCCCCC---HHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 711 NPSIIFMDEPTSGLD---ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 711 ~p~illlDEPtsgLD---~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
.|.++++||.-.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988774 66777788888888778999999999886
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.071 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+|.++.+.|++||||||+.+.|+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999764
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.082 Score=56.64 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.097 Score=54.51 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=23.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+|.++++.|++||||||+.+.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.17 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.075 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.085 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999854
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.072 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.084 Score=56.84 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.089 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.08 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.08 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.08 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.095 Score=55.20 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=30.1
Q ss_pred hCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHhhCCCE-EEEEecCC
Q 001146 710 ANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRT-VVCTIHQP 753 (1140)
Q Consensus 710 ~~p~illlDEPtsgL-D~~~~~~v~~~l~~~~~~g~t-vi~~~H~~ 753 (1140)
.+|+++++||...-- +......+.+.++...+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999975532 233366777888777666655 77777743
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.084 Score=59.48 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.083 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.095 Score=55.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.31 E-value=0.083 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.084 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.0
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999853
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.087 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHh
Q 001146 580 GVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.085 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.086 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.14 Score=56.90 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=23.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++.++.|+||+|||||||...|+.+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.088 Score=53.69 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.096 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.087 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.082 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.091 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.085 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.089 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.16 Score=50.37 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=26.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++..-.. ..|.-++|.|+||+|||||...|..+
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 45554444 56889999999999999999888653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.091 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.085 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.1 Score=57.68 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|...+.|.||+|+||||+.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999853
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.094 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1140 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-07 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-08 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-08 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-11 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-07 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-09 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-08 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-08 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-09 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-05 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-08 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-07 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-08 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-06 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-07 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (284), Expect = 9e-29
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 614
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 615 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 672
+ + T R G+ Q P +T E++ + + E R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 673 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 732
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 733 MRTVRNTVD-TGRTVVCTIHQPSIDIFEA--FDELFLMKRG 770
M+ ++ + G+TVV H DI A + + +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH----DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
+ +SGGQ++RV + + D+ + LDS T +I+ L++ ++ G
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDG 196
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 94
V+ ++ + II L DG++ +
Sbjct: 197 KTVV-VVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 7e-28
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
Q +T+ E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 688 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 53.8 bits (129), Expect = 3e-08
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D +SGGQ K V G ++ + MDE G+ I N + + G
Sbjct: 145 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGIT 202
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
+ + + D + ++ +GQI+ +G E ++
Sbjct: 203 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (274), Expect = 2e-27
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLV 686
+ P +T+YE+L+ A+ R D E K ++ + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 747 VCTIHQPSIDIFEAF---DELFLMKRG 770
+ + A ++++ G
Sbjct: 193 LLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 52.6 bits (126), Expect = 7e-08
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
++ +SGG+++ + G ++ L MDE S GL ++ +++ GT
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK--INQEGTT 191
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
++ + Q A + +L GQIV +G +L+
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 108 bits (271), Expect = 7e-27
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 623 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
R Q+ P +T+YE++ F ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 740
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 741 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
T + H D EA D + +M RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 61.3 bits (149), Expect = 8e-11
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
+ +SGGQ++RV +V L MDE + LD+ + +++ +
Sbjct: 131 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVT 189
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 119
I + E + D I +++ GQ++ G P E+ + P VA F+
Sbjct: 190 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 2e-25
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 627 RIS-----------GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 675
Q+ +T+ E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 676 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 736 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 51.4 bits (123), Expect = 2e-07
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
+ +SGGQ++RV+ + L DE ++ LD +++ ++Q G
Sbjct: 144 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEEGKT 201
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
++ + + +I L G+I +G E + F + P+ + FL+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 3e-25
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 558 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 614
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 615 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
++ + + T AR G Q+ T++ ++ L +P+ + + R + E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 674 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 733
LV L S S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 734 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+++ G T++ H+ + + D + ++ G
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 55.3 bits (133), Expect = 8e-09
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D +SGGQK+RV + L DE ++ LD +TT + + L ++I+ G
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT-RSILELLKDINRRLGLT 193
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 118
++ + + D + ++S+G+++ Q E F+ PK F
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (252), Expect = 7e-25
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 624
DK VL ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-- 67
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684
+ + I +++ + L A L K I + +E VE+ L++
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 743
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 744 RTVVCTIHQPSI 755
++ + + S
Sbjct: 177 IVIISSREELSY 188
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (254), Expect = 9e-25
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 622
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
++ Y + + E L F A S + E ++ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 54.2 bits (130), Expect = 2e-08
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
+ + S G +++ ++ +DE ++GLD ++ L+Q G
Sbjct: 128 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLT 185
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 122
++ E L D I L+ +G IV G EL K + + + +EV
Sbjct: 186 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL---------KERYKAQNIEEVFEEV 236
Query: 123 T 123
Sbjct: 237 V 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (254), Expect = 2e-24
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
+C Q P TI E+++F E ++ ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 749
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 750 IHQPSIDIFEAFDELFLMKRG 770
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.7 bits (134), Expect = 1e-08
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
E +SGGQ+ R++ + A +D LD T Q+ + N
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL-------VLEFFASMGFRCPKRKGV 115
+++ E D I++L G + G EL + F +
Sbjct: 213 LVTS---KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERR 269
Query: 116 ADFLQEVTSR 125
+ L E R
Sbjct: 270 SSILTETLRR 279
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 3e-23
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 626
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSL 685
QN +++ R + M+ + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRG 770
+ H+ S E DE+ +++ G
Sbjct: 204 SLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
E +SGGQ++R+ ++ + L +DE ++ LD+ + I L + +
Sbjct: 147 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRT 203
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 105
+ ++ T + D+I+++ DG IV +G +L +A +
Sbjct: 204 SL-VIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 7e-23
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 626
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
Y Q ++ L + TR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 687 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 740 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (108), Expect = 1e-05
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALA-------LFMDEISTGLDSSTTFQIVNCLRQNI 56
+SGG+ +RV +++ L +DE LD + + L
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 57 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
G A++ T LL G+++ G RE VL
Sbjct: 180 Q--QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 620
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680
R G Q D +I +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
GRTV+ H+ S + D + +M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (123), Expect = 1e-07
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++R+ +V L DE ++ LD + I+ + + I G VI +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH 196
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
T D II++ G+IV QG + +L
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 624
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 625 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
A G Q+ P +++ E++ F L + + R +++V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 742
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 743 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 52.6 bits (126), Expect = 5e-08
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + +SGGQ++RV G +V +DE + LD++ + +H G
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRT 183
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 119
+I + E L D I++L G++ G P EL + P + VA F+
Sbjct: 184 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.5 bits (230), Expect = 2e-21
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 535 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 594
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 652
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 653 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712
EV + + + L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 713 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 52.1 bits (125), Expect = 1e-07
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
E +SGGQK+R++ + + L +DE ++ LD + I L ++
Sbjct: 149 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRT 205
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 105
+ ++ T D I+++ +G IV G ++ + +
Sbjct: 206 TL-IVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 49/244 (20%), Positives = 98/244 (40%), Gaps = 22/244 (9%)
Query: 532 GMVLPFEPH-SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 590
G++ P + F +V ++ ++ V L G++ RPG +TAL+G +G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNG 50
Query: 591 AGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647
+GK+T+ +L + TGG + + Y + R Q ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQEN 107
Query: 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 707
+ + + + E + + P S LS QR+ + +A
Sbjct: 108 IAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 708 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 766
L+ P ++ +D+ TS LDA + V + + + + R+V+ S + E D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILF 223
Query: 767 MKRG 770
++ G
Sbjct: 224 LEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (124), Expect = 1e-07
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
DE +SGGQ++ V ++ L +D+ ++ LD+++ Q+ L ++ S +
Sbjct: 146 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 205
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 105
++ + D I+ L G I G + ++E + +M
Sbjct: 206 LLITQH--LSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 621
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 622 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679
+ Q+ P +T+Y+++ F LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 740 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 770
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 53.0 bits (127), Expect = 5e-08
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
+ R +SGGQ++RV G +V MDE + LD + + + + G
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVT 192
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 119
I + E + D I +++ G + G + V + P VA F+
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 1e-19
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
G+ Q+ TI E+L + + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 747 VCTIHQPSIDIFEAFDELFLMKRG 770
+ H+ S D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 47.9 bits (114), Expect = 2e-06
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
E ISGGQ++R+ + L +DE + LDS + + L + G
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---LMKGRT 190
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 105
+ + T D I + GQI G ++ +A
Sbjct: 191 TLVIAH-RLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.5 bits (211), Expect = 5e-19
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 623
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 624 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
R G Q P +T +E++ F ++ E + ++EV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 740
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 49.7 bits (118), Expect = 6e-07
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
+ R +SG Q++RV +V L +DE + LD+ L + + G
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVT 193
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 119
++ + + + + D + +L G++V G P +L + P VA +
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.9 bits (181), Expect = 4e-15
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 628
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
+ QN P + + ++L F ++ + + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 747
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 748 CTIHQPSIDIFEAFDELFLMKRG 770
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 51.2 bits (122), Expect = 2e-07
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D +SGG+++RV +V L +DE + LD T + + +H +
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-RTQENAREMLSVLHKKNKLT 180
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 119
V+ + E + D I ++ DG+++ G P E+ F P VA F+
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.0 bits (171), Expect = 9e-14
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 579 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 635
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695
P +++Y ++ + V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 754
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 755 IDIFEAFDELFLMKRG 770
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.8 bits (103), Expect = 5e-05
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D +SGG+++RV +V L +DE + +D T ++ LR +
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF-VQREFDVP 179
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 119
++ + E L D++ ++ +G+IV +G + E F+ K VA+FL
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---ELFS------AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.4 bits (114), Expect = 7e-07
Identities = 23/201 (11%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 584 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 640
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 760
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 761 FDELFLMKRGGQEIYVGPLGR 781
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 19/143 (13%)
Query: 634 QNDIHSPFVTIYESLL-----------FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682
+ + IY L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 743 GRTVVCTIHQPSIDIFEAFDELF 765
+ + +FE D L
Sbjct: 386 DLQFIVISLKN--TMFEKSDALV 406
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (86), Expect = 0.004
Identities = 10/102 (9%), Positives = 28/102 (27%), Gaps = 1/102 (0%)
Query: 584 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643
+ G +GKT+L+ +L + + + + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
++ + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1140 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.88 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.88 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.87 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.87 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.86 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.86 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.86 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.85 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.85 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.85 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.85 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.84 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.84 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.83 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.82 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.81 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.8 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.54 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.18 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.85 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.76 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.45 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.16 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.59 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.43 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.96 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.51 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.25 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.17 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.16 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.13 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.03 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.89 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.73 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.69 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.51 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.42 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.41 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.25 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.21 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.2 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.08 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.08 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.88 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.83 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.82 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.81 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.76 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.75 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.66 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.64 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.55 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.47 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.33 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.31 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.29 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.23 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.18 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.15 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.13 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.09 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.08 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.07 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.05 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.93 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.91 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.87 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.86 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.81 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.66 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.66 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.63 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.54 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.45 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.44 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.15 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.09 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.97 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.89 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.81 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.68 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.58 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.51 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.46 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.43 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.35 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.28 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.28 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.15 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.13 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.06 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.06 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.02 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.71 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.7 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.48 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.38 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.35 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.34 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.26 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.21 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.18 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.16 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.14 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.11 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.11 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.07 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.95 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.88 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.86 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.83 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.76 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.72 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.6 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.59 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.58 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.45 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.39 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.32 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.31 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.21 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.2 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.18 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.07 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.94 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.8 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.79 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.76 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.65 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.55 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.53 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.42 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.29 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.04 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.87 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.85 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.73 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.65 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.62 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.55 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.24 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.17 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.04 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.86 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.75 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.74 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.72 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.68 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.65 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.14 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.95 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.87 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.83 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.55 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.52 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.31 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.16 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.99 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.71 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.59 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.45 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.76 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.65 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.55 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.42 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.24 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.19 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.74 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.5 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.07 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.52 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.78 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.5 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.23 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 80.2 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.03 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.5e-49 Score=418.60 Aligned_cols=215 Identities=22% Similarity=0.352 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceec
Confidence 489999999983 46799999999999999999999999999999999998875 489999999987
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.+|||+|++.++|.+||+||+.|...++ ..++++.+++++++++.++|.+..|.. +++||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 54 234567999999999999999999999876554 456777888899999999999988876 367999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++|||+. ++.++|||+++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999986 68899999999995 89999999
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-50 Score=418.92 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=155.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|. ++++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEECC
Confidence 57899999983 46799999999999999999999999999999999998874 4899999999875
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|++.++|.+||+||+.|+...+. .++++.+++++++++.++|.+..|..+ ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 42 345779999999999999999999999876553 344556678999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|+|++||++. ++.++|||+++|++ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 78899999999985 899999997
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.8e-49 Score=414.12 Aligned_cols=214 Identities=26% Similarity=0.346 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||+++|. ++++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEe
Confidence 488999999983 45799999999999999999999999999999999998874 489999999876
Q ss_pred Ccc-------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~-------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... ..++.+|||+|++.++|.+||+||+.+...++ ..+.++++++++++++.++|.+..|..+ ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 421 12567999999999999999999999998776 3567778888999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.++|||+++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 68899999999995 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.4e-49 Score=417.20 Aligned_cols=216 Identities=27% Similarity=0.391 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||+++|+ .++..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEe
Confidence 488999999995 1346799999999999999999999999999999999998875 489999999986
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..|... ++|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 42 223567999999999999999999999987543 4567778888999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++||+++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999654 999999999986 68899999999995 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999997
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-48 Score=412.78 Aligned_cols=219 Identities=22% Similarity=0.290 Sum_probs=192.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|... ....++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEee
Confidence 6899999999632 1234689999999999999999999999999999999998874 4899999999874
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ..+|+.+|||+|++.++|.+||+||+.++..++. .++++.+++++++++.+||.+..|..+ ++||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 3 1245679999999999999999999999887653 344566778999999999998887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 67889999999995 8999
Q ss_pred EECCCCc
Q 001146 775 YVGPLGR 781 (1140)
Q Consensus 775 ~~g~~~~ 781 (1140)
+.|++++
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
Confidence 9999853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-48 Score=407.00 Aligned_cols=219 Identities=23% Similarity=0.363 Sum_probs=190.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|+.. .....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcC
Confidence 6899999999632 1234589999999999999999999999999999999998774 4899999999875
Q ss_pred cc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCc
Q 001146 622 QE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 693 (1140)
Q Consensus 622 ~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~ 693 (1140)
.. . .++.+|||+|++.++|.+||+||+.++...+.....+.+++++++.+.++.++|.+ ..+.. +.+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 31 1 23569999999999999999999999988766556677788888999999999975 45554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|+|++||+++ +.++|||+++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999974 4589999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++.+|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-48 Score=406.30 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|.. .+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~--------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWKN--------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECSS--------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCC--------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEecc
Confidence 688999999841 279999999999999999999999999999999998875 4899999999986
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.+|||+|++.++|.+||+||+.|+..++... . +++++++++.+++.+..|..+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 5 234567999999999999999999999998766422 1 235789999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||++. ++.++|||+++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 5999999999986 78899999999985 899999997
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 213 ~ 213 (229)
T d3d31a2 213 E 213 (229)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-46 Score=397.30 Aligned_cols=215 Identities=23% Similarity=0.320 Sum_probs=193.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||+++| +++++|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|+++
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEec
Confidence 47899999988 356799999999999999999999999999999999998875 489999999986
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.++||||++.+++++|+.||+.|...++. ....+.++.++++++.+++.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 3456789999999999999999999999887653 345666778899999999998888775 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++|||||+++|++|+|||||+|||+.++.++.+.+++++++|+|||++||+++ ++..+||||++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999988999999999987 78889999999995 89999999
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 217 ~~ 218 (238)
T d1vpla_ 217 VE 218 (238)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.6e-46 Score=397.97 Aligned_cols=216 Identities=20% Similarity=0.252 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||+++|. +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEe
Confidence 388999999883 35699999999999999999999999999999999998874 489999999987
Q ss_pred Ccc----------------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 001146 621 KQE----------------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQ 683 (1140)
Q Consensus 621 ~~~----------------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~ 683 (1140)
... ..++.+|||+|++.++|.+||.||+.++..... ..+.++.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhc
Confidence 421 245679999999999999999999998743221 34566777889999999999764 34
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 684 ~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.. +.+|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|++++++|+|||++|||+. ++..+|||
T Consensus 145 ~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred cC-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCE
Confidence 43 3579999999999999999999999999999999999999999999999988999999999986 68899999
Q ss_pred EEEEecCCEEEEECCCC
Q 001146 764 LFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~~ 780 (1140)
|++|++ |+++..|+++
T Consensus 219 i~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEEcCHH
Confidence 999985 8999999974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.1e-46 Score=395.85 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=185.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++++||+++|. ++++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|++
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred eEEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEecccc
Confidence 3589999999983 46799999999999999999999999999999999998874 48999999998
Q ss_pred cCccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcC
Q 001146 620 KKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 620 ~~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~L 694 (1140)
+.... .+..++|++|+..++|.+||+||+.+.+..+.. .+..++.++++++.+ ++.+..+..+ .+|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCch-----hhC
Confidence 75421 234589999999999999999999887644322 223334456677666 6777777664 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||+++|+++ ++.++|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999988999999999986 78899999999995 8999
Q ss_pred EECCCCc
Q 001146 775 YVGPLGR 781 (1140)
Q Consensus 775 ~~g~~~~ 781 (1140)
+.|++++
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EEcCHHH
Confidence 9999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-45 Score=396.82 Aligned_cols=219 Identities=24% Similarity=0.264 Sum_probs=189.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+.+|. ++++|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEec
Confidence 378999999883 46799999999999999999999999999999999998875 489999999987
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHccC----------CCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 001146 621 KQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL----------SPEVDSETRKMFIDEVMELVELNPLRQSLV 686 (1140)
Q Consensus 621 ~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 686 (1140)
.... .++.++|++|++.+++.+||+||+.++...+. .....+++..++++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 5422 23459999999999999999999988653321 111223445567889999999999888765
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||+++|+++ ++.++||||++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999888999999999998 68999999999
Q ss_pred EecCCEEEEECCCCc
Q 001146 767 MKRGGQEIYVGPLGR 781 (1140)
Q Consensus 767 l~~gg~~~~~g~~~~ 781 (1140)
|++ |+++..|++++
T Consensus 223 m~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGEE 236 (254)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EeC-CEEEEEecHHH
Confidence 995 89999999853
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-46 Score=394.10 Aligned_cols=212 Identities=27% Similarity=0.438 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+|+||+|+|+. +++.+|+||||+|++||.+||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEe
Confidence 4899999999952 345699999999999999999999999999999999998874 489999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~~ 690 (1140)
.. ..+|+.++||+|++.+++ .||+||+.++. +..+.++. .++++..+ +....++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEKV----IYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHHH----HHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred cccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHHHH----HHHHHHHhhHHHHHhhhcchhhhcCCCC
Confidence 54 456788999999998875 79999998742 22333322 22233222 2344566666543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|+|++||+++ ..+.||||++|++
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999864 899999999986 3578999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 213 G~Iv~~G~~~ 222 (241)
T d2pmka1 213 GKIVEQGKHK 222 (241)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999974
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.9e-45 Score=384.87 Aligned_cols=193 Identities=23% Similarity=0.372 Sum_probs=174.0
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLF 650 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 650 (1140)
||||+++ ||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 689999999999999999999998874 48999999998764 2346789999999999999999999998
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHH
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 730 (1140)
+. + ..++.+++++++++++.+||.+..+..+ ++|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 3456777788999999999999888764 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 731 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 731 ~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
.+++.++++.++ |.|||++||+++ ++.++|||+++|++ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999986 78999999999985 899999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-44 Score=386.97 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=177.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
+.|+++||+|+|+.. .++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEe
Confidence 469999999999632 234689999999999999999999999999999999999874 48999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
+.. ..+++.++||+|++.+++ .||+||+.++... ....++.. ....+.++ ++.+..++.++.. .
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred cchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-C
Confidence 754 446788999999998886 6999999876321 12222211 11223333 3444556666643 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.++ |+|+|++||+++ ..+.||||++|++
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~- 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG- 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998654 899999999974 5678999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 227 G~iv~~Gt~~ 236 (251)
T d1jj7a_ 227 GAIREGGTHQ 236 (251)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999974
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.1e-45 Score=388.08 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=174.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+|+|+. .+.+|+||||++++||++||+||||||||||+++|+|..++ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 789999999952 23589999999999999999999999999999999998874 4899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~~~ 691 (1140)
. ..+|+.++||+|++.+++. ||+||+.+... ...+.++. .+.++..+ +.+..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDL----WQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHHH----HHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchhhH----HHHHHHHHhhhhhccCcccccccccCCC-
Confidence 4 4567889999999998875 99999976422 12233322 23333322 3344566666543
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ....||||++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 5699999999999999999999999999999999999999999999986 4999999999975 4567999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
+++..|++++
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
Confidence 9999999753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.4e-44 Score=382.12 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=179.5
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.|+++||+|+|+. +.+.+|+||||+|++||.+||+||||||||||+++|+|...+ .+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETT
T ss_pred CCCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCC
Confidence 3467999999999962 234689999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g 687 (1140)
.++.. ..+|+.++||+|++.+++ .||+||+.++. +..++++ +.++++..++. +-.|+.+|
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDEE----VVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCHHH----HHHHHHHhCCHHHHHhccccccchhc
Confidence 98754 457788999999998875 79999998752 1233332 34555555543 34566666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ ..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ....||||++|
T Consensus 150 ~~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEE
Confidence 543 56999999999999999999999999999999999999999999998864 899999999986 35789999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++..|+++
T Consensus 226 ~~-G~iv~~G~~~ 237 (255)
T d2hyda1 226 EN-GHIVETGTHR 237 (255)
T ss_dssp ET-TEEEEEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-43 Score=381.41 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=177.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.|+++||+|+|+. .+..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 11 ~g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 77 (253)
T d3b60a1 11 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGH 77 (253)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTE
T ss_pred ceEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCc
Confidence 457999999999962 234689999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .|+++|+.++. +...+.++ ++++++..++.+ -.++.++.
T Consensus 78 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 78 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred ccchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC
Confidence 8754 456778999999998775 79999998752 12233332 344444444432 34566665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||||++|+
T Consensus 149 ~-~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~ 224 (253)
T d3b60a1 149 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE 224 (253)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999999864 899999999986 357899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 225 ~-G~Iv~~G~~~ 235 (253)
T d3b60a1 225 D-GIIVERGTHS 235 (253)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-40 Score=353.95 Aligned_cols=195 Identities=22% Similarity=0.357 Sum_probs=168.0
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5999999999999999999999999999999999753 36999999998644 23345679999988776778999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCcEeEEe
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 718 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~-------~p~illlD 718 (1140)
+++.+...- . .+++.++++++.+++.+..+..+ +.|||||||||+|||+|+. +|+||+||
T Consensus 91 ~~~~~~~~~----~----~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD----K----TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC----T----TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccch----h----hHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 999875321 1 22345788999999998877654 5699999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|||+|||+.++..+.+.+++++++|+|||+++|+++ ++.++|||+++|++ |++++.|++++
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~e 218 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREE 218 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999989999999999987 68999999999985 89999998753
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-39 Score=350.60 Aligned_cols=193 Identities=20% Similarity=0.348 Sum_probs=154.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
+++||+||||+|++||++||+||||||||||+++|+|..++ .+|.|.++| +++|++|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECC----------EEEEEeccccccC-ceee
Confidence 35799999999999999999999999999999999998874 489999987 3799999998887 5999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHH---HHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDE---VMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
||+.|+. .......+...+. ......+.+..++.++.. ...|||||||||+|||||+++|+||+|||||+
T Consensus 115 eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred ccccccc------cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 9998753 1222221111111 112233444556666543 34699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
+||+.++..+++.+.+...+++|+|++||++ +..+.||||++|++ |+++++|++++
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999876544445689999999997 45688999999985 89999999854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.5e-38 Score=326.75 Aligned_cols=195 Identities=19% Similarity=0.285 Sum_probs=161.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|+++||++.|+ +++|+||||++++||+++|+||||||||||+++|+|..+| .+|+|.+||.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEeh
Confidence 489999999884 2489999999999999999999999999999999998874 489999999987
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. .+..++|++|+..+++.+|++|++.+...++.. ...++ .+.+.++.+++.+..+ . +.+|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~-~-----~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKN----EIMDALESVEVLDLKK-K-----LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHH----HHHHHHHHTTCCCTTS-B-----GGGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCHH----HHHHHHHHcCCccccc-c-----cCcCCCcHHH
Confidence 53 466799999999999999999999988776533 22222 2556777787765433 2 3469999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|++|||+|+.+|++++|||||+|||+.++..+++.|+++.++ |.++|.++|+. ++||++.+|++
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998765 44444444443 47999998865
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.2e-23 Score=220.42 Aligned_cols=91 Identities=27% Similarity=0.394 Sum_probs=80.6
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+||||||+||+.++..|++.++++. + ++|+|+.. |+.++++.+|+|+||+
T Consensus 136 ~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~-~~Tvi~it--H~l~~~~~~D~i~vl~ 211 (241)
T d2pmka1 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIA--HRLSTVKNADRIIVME 211 (241)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEEC--SSGGGGTTSSEEEEEE
T ss_pred CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-C-CCEEEEEE--CCHHHHHhCCEEEEEE
Confidence 346799999999999999999999999999999999999999999999865 3 44544432 6667889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 212 ~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 212 KGKIVEQGKHKELLS 226 (241)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.9e-23 Score=222.90 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=83.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+||||||+||+.++..+++.++++.++.++|+|+.. |+.++++.||+|+||+
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~it--H~l~~~~~aDrI~vl~ 225 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT--QHLSLVEQADHILFLE 225 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEEC--SCHHHHHTCSEEEEEE
T ss_pred cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEe--CCHHHHHhCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999987665566666543 5568899999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|||+|+++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=2.7e-23 Score=221.89 Aligned_cols=91 Identities=26% Similarity=0.374 Sum_probs=80.8
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. ++.|+++|| |+.++++.||+|+||+
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~it---H~l~~~~~~D~v~vl~ 224 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA---HRLSTIEQADEIVVVE 224 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEEC---SCGGGTTTCSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEE---CCHHHHHhCCEEEEEE
Confidence 456799999999999999999999999999999999999999999999864 344444444 6778889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 225 ~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 225 DGIIVERGTHSELLA 239 (253)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.87 E-value=1.6e-23 Score=222.29 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=80.9
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+|||||||||+.++..|++.++++. + ++|+|+.. |+.++++.||+|+||+
T Consensus 136 ~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~-~~Tvi~it--H~l~~~~~~D~i~vl~ 211 (242)
T d1mv5a_ 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIA--HRLSTIVDADKIYFIE 211 (242)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEEC--CSHHHHHHCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-C-CCEEEEEE--CCHHHHHhCCEEEEEE
Confidence 345699999999999999999999999999999999999999999999865 3 45555432 6778889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 212 ~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 212 KGQITGSGKHNELVA 226 (242)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.86 E-value=1e-22 Score=216.97 Aligned_cols=91 Identities=23% Similarity=0.343 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+||||||+||+.++..+++.++++. .++|+|++| |+.++++.||+|++|+
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~it---H~~~~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVA---HRLSTITHADKIVVIE 226 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEEC---SSGGGTTTCSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEe---CCHHHHHhCCEEEEEE
Confidence 346799999999999999999999999999999999999999999998855 344444444 6778899999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 227 ~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 227 NGHIVETGTHRELIA 241 (255)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.7e-22 Score=210.95 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||+.+...+++.++++.++.++|+|++.| ...++.+.+|+|++
T Consensus 121 ~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtH-d~~~~~~~adri~v 199 (240)
T d2onka1 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH-DLIEAAMLADEVAV 199 (240)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-CHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999999988777888777656 44588999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++|+..
T Consensus 200 m~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 200 MLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEecHHHHhc
Confidence 99999999999999974
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.86 E-value=3.3e-22 Score=207.97 Aligned_cols=96 Identities=25% Similarity=0.277 Sum_probs=87.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.....|||||||||+|||||+.+|+||+|||||||||+.+...+.+.++++.++.+.||+++.| -..++.+.+|+|++
T Consensus 122 ~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~v 200 (229)
T d3d31a2 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAV 200 (229)
T ss_dssp TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC-CHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999987777888887655 44578889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++|+.+
T Consensus 201 m~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 201 VMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp ESSSCEEEEECHHHHHS
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=3.5e-22 Score=209.16 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 3 G~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
.+...++|||||||||+|||||+.+|+||+|||||||||+.+..++++.++++.++.|+|++++.| -..++.+.+|+|+
T Consensus 130 ~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d~~~a~~~~dri~ 208 (239)
T d1v43a3 130 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIA 208 (239)
T ss_dssp TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEE
T ss_pred hcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-CHHHHHHhCCEEE
Confidence 356788999999999999999999999999999999999999999999999988777888888766 5558889999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|++|+++++|+++|+.+
T Consensus 209 vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 209 VMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999999964
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.85 E-value=2.6e-22 Score=210.23 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=87.7
Q ss_pred CCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 3 G~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
.+.+.++|||||||||+|||||+.+|+||+|||||||||+.+..++++.++++.++.|.|+|++.|. ..++.+.+|+|+
T Consensus 134 ~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~ 212 (242)
T d1oxxk2 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVG 212 (242)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEE
T ss_pred hhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC-HHHHHHhCCEEE
Confidence 3567889999999999999999999999999999999999999999999999877778888776553 447889999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|++|+++++|+++|+..
T Consensus 213 vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 213 VLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.85 E-value=5e-22 Score=208.40 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=87.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.+.|||||||||+|||||+.+|+||+|||||||||+.+...+++.++++.++.|+|||++.| --.++.+.+|+|++
T Consensus 134 ~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~v 212 (240)
T d1g2912 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAV 212 (240)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEE
Confidence 56778999999999999999999999999999999999999999999999987776888887755 44578888999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++|+..
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999974
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.2e-22 Score=207.92 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||+.+..++++.++++.++.|+|+|++.| --.++.+++|+|++
T Consensus 125 ~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~v 203 (232)
T d2awna2 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVV 203 (232)
T ss_dssp ---------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 44677899999999999999999999999999999999999999999999987777888887655 45578888999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++|+..
T Consensus 204 m~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 204 LDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999974
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=5.4e-22 Score=207.10 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=81.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+|||||||||+|||||+.+|+||+|||||||||+.++..|++.++++.++.|+|+|++.|. .+..+.+|+|++
T Consensus 140 ~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd--~~~a~~~drv~~ 217 (230)
T d1l2ta_ 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIY 217 (230)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC--HHHHTTSSEEEE
T ss_pred cCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC--HHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999999887778888877664 456799999999
Q ss_pred ecCCeEEEecCc
Q 001146 84 LSDGQIVYQGPR 95 (1140)
Q Consensus 84 L~~G~vvy~G~~ 95 (1140)
|++|+++++|+.
T Consensus 218 m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 218 LKDGEVEREEKL 229 (230)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEeccC
Confidence 999999999974
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.8e-22 Score=207.92 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=86.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||+.++.+|++.++++.++.|.|++++.| .-..+.+.+|+|++
T Consensus 135 ~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~v 213 (240)
T d3dhwc1 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAV 213 (240)
T ss_dssp SSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999999988777888888655 55577888999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++|+.
T Consensus 214 l~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 214 ISNGELIEQDTVSEVF 229 (240)
T ss_dssp EETTEEEEEEETTTTT
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999999985
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=5.6e-22 Score=215.05 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=78.4
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+|||||||||+.++..+++.+.+... .++|+|+.. |+.+.++.||+|++|+
T Consensus 155 ~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~it--H~~~~l~~aDrI~vl~ 231 (281)
T d1r0wa_ 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVT--SKMEHLRKADKILILH 231 (281)
T ss_dssp TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEEC--SCHHHHHTCSEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEe--chHHHHHhCCEEEEEE
Confidence 3456999999999999999999999999999999999999999887544343 345555443 5568899999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|||+|++.
T Consensus 232 ~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 232 QGSSYFYGTFSELQS 246 (281)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999999974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.83 E-value=3.4e-21 Score=203.82 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||+|||+.+..++.+.++++.+ .|+||+++.| .-.++.+.+|+|+|
T Consensus 134 ~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH-~l~~~~~~~drv~v 211 (240)
T d1ji0a_ 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ-NALGALKVAHYGYV 211 (240)
T ss_dssp TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEES-CHHHHHHHCSEEEE
T ss_pred hCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999999765 5777777644 66788999999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++|+.
T Consensus 212 l~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=9.9e-21 Score=199.77 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=86.8
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
..++.||||||||++|||||+++|+||+|||||+|||+.+..++.+.+++++. .|+||+++.| .-.++...+|+|++|
T Consensus 129 ~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl 206 (238)
T d1vpla_ 129 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH-NMLEVEFLCDRIALI 206 (238)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEE
T ss_pred hhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999999998764 5888888766 555888899999999
Q ss_pred cCCeEEEecCcchHHHHH
Q 001146 85 SDGQIVYQGPRELVLEFF 102 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~~F 102 (1140)
++|+++++|+++|+.+.|
T Consensus 207 ~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 207 HNGTIVETGTVEELKERY 224 (238)
T ss_dssp ETTEEEEEEEHHHHHHHT
T ss_pred ECCEEEEEcCHHHHHhcc
Confidence 999999999999998644
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.1e-20 Score=201.58 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=83.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
....+|||||||||+|||||+.+|+||+|||||||||+.+..+|++.++++.+ .|+||++. .|--.++.+++|+|+||
T Consensus 145 ~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~v-tHdl~~~~~~adri~vm 222 (258)
T d1b0ua_ 145 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVV-THEMGFARHVSSHVIFL 222 (258)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEE-CSCHHHHHHHCSEEEEE
T ss_pred cCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEE-eCCHHHHHHhCCEEEEE
Confidence 34678999999999999999999999999999999999999999999999765 56776664 33555778899999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+++|+..
T Consensus 223 ~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 223 HQGKIEEEGDPEQVFG 238 (258)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999999974
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=3.1e-20 Score=198.54 Aligned_cols=95 Identities=23% Similarity=0.289 Sum_probs=85.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++.|||||||||+|||||+.+|+||+|||||+|||+.+..++.+.++++. ..|+||+++-| .-.++.+.+|+|+|
T Consensus 145 ~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsH-dl~~~~~~~Drv~v 222 (254)
T d1g6ha_ 145 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEH-RLDIVLNYIDHLYV 222 (254)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECS-CCSTTGGGCSEEEE
T ss_pred cCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeC-cHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999875 46888887644 66688999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++|+.+
T Consensus 223 m~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 223 MFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp EETTEEEEEEESHHHHH
T ss_pred EeCCEEEEEecHHHHhh
Confidence 99999999999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=6.7e-20 Score=193.28 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=83.1
Q ss_pred CccccCccchhhhhHHHHHhhc-------CceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh
Q 001146 5 EMIRGISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 77 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~-------~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~ 77 (1140)
...+.|||||||||+|||+|+. +|+||+|||||||||..+...+.+.++++.+ .|+||+++.|. -.++.+.
T Consensus 121 ~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~ 198 (231)
T d1l7vc_ 121 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRH 198 (231)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHH
T ss_pred cChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHH
Confidence 4567899999999999999997 6799999999999999999999999998764 68888887664 3479999
Q ss_pred ccceEEecCCeEEEecCcchHH
Q 001146 78 FDDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 78 fD~I~vL~~G~vvy~G~~~el~ 99 (1140)
+|+|++|++|+++++|+++|++
T Consensus 199 ~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 199 AHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CSBCCBEETTEECCCSBHHHHS
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999985
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.54 E-value=1.8e-15 Score=155.52 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=65.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
..++.||||||||++|||+|+.+|+||+|||||+|||..++..+++.+++.++.+ +++|++.||. . ..+|.+.+|
T Consensus 121 ~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~-l---~~~D~~~~l 195 (200)
T d1sgwa_ 121 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREE-L---SYCDVNENL 195 (200)
T ss_dssp SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSC-C---TTSSEEEEG
T ss_pred cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCC-CEEEEEEech-h---hhcchhhhe
Confidence 4567899999999999999999999999999999999999999999999987654 5666665543 2 478999998
Q ss_pred cC
Q 001146 85 SD 86 (1140)
Q Consensus 85 ~~ 86 (1140)
++
T Consensus 196 ~~ 197 (200)
T d1sgwa_ 196 HK 197 (200)
T ss_dssp GG
T ss_pred ee
Confidence 64
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=2.1e-14 Score=145.47 Aligned_cols=158 Identities=15% Similarity=0.003 Sum_probs=96.5
Q ss_pred EEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccce--EEEeccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI--SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~--~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 660 (1140)
++|+||||||||||+++|+|...+. .|.+...+.+......+.. +.............+. ......
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF----------TSKKLV 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------CCEEEEEETTCCEEEEEETTC----------CCSSEE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC--cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhh----------hhhhhh
Confidence 7999999999999999999976643 6788877765432221111 1111000000000000 000000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 661 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
...+. +. ....+|+|+++|.++++++..+|+++++|||+...+ ....+.+.+.++.
T Consensus 71 -------------~~~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l 126 (178)
T d1ye8a1 71 -------------GSYGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIM 126 (178)
T ss_dssp -------------TTEEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHH
T ss_pred -------------hhhhc----Cc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHh
Confidence 00000 00 012489999999999999999999999999854433 3345556666654
Q ss_pred h-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 741 D-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 741 ~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
+ .+.++|+++|+.. ....+|++..+. +|+++.-++.
T Consensus 127 ~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 127 HDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp TCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred ccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 4 4899999999865 467889998887 5788776654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=4.2e-08 Score=107.42 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 691 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
...+|+|||+...++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-+|++||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 356999999998887754 346789999999999999999999999998864 678999999985 5788999866
Q ss_pred E
Q 001146 767 M 767 (1140)
Q Consensus 767 l 767 (1140)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=1.2e-07 Score=108.55 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=63.8
Q ss_pred CcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 692 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..||||||.++++|..+ ..++++++||||+++||+.....+.+.|++++..+.-+|+|||+| .+.+.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998887544 357789999999999999999999999998866567799999997 578999998766
Q ss_pred e
Q 001146 768 K 768 (1140)
Q Consensus 768 ~ 768 (1140)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=6.9e-07 Score=102.02 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=59.4
Q ss_pred cccCccchhhhhHHHHH----hhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 7 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAra----Lv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
++.+|||||.++++|-. ...+++|++||||+++||......+.+.|+++++...-.|++| |.+.+...+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iT---H~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS---LKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEEC---SCHHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEe---CCHHHHHhcccEE
Confidence 36689999999988732 2467779999999999999999999999987654322245555 7778999999987
Q ss_pred Ee
Q 001146 83 LL 84 (1140)
Q Consensus 83 vL 84 (1140)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.63 E-value=0.00025 Score=72.15 Aligned_cols=62 Identities=8% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHh
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEA 760 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~ 760 (1140)
.|-+|++-....+.+..++|+||+.+|=|+.....+.. .++.+.+.+..++++||.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 34444444444456678999999999999987766554 4455666788999999974 45443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.59 E-value=1.2e-05 Score=79.34 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=65.0
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCe
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~ 88 (1140)
.+|||+++|.++++++..+|++|++|||+...+. ....++.+.+..+..+++++++.|+. +.....|+|..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCE
Confidence 4799999999999999999999999999765543 33566777766655677877775543 5667889999999999
Q ss_pred EEEecC
Q 001146 89 IVYQGP 94 (1140)
Q Consensus 89 vvy~G~ 94 (1140)
+++-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 998664
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00035 Score=71.67 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhC-CCEEEEEecCCC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT-GRTVVCTIHQPS 754 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~-g~tvi~~~H~~~ 754 (1140)
|-+|++=...-+.+..++++||+.+|=|+.....+... ++.+..+ +..++++||...
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 34444433334556679999999999999888777654 5666544 568899999754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00054 Score=73.61 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=61.4
Q ss_pred cccCccchhhhhHHHHH----hhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 7 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAra----Lv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
...+|+|||+...++.. ...+|+++++|||-++||+.....+.+.|++.++ ++=+|+|. |++.++..+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEE--CCHHHHHhcccEE
Confidence 46799999999887643 4567889999999999999999999999988653 45555553 6678899999996
Q ss_pred E--ecCC
Q 001146 83 L--LSDG 87 (1140)
Q Consensus 83 v--L~~G 87 (1140)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4566
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.96 E-value=0.00068 Score=71.62 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=27.9
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+++..-+.+|+++.|.|++|+||||++.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 566655689999999999999999999877763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.00053 Score=69.15 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 47899999999999999999998853
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.00069 Score=66.73 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|.++.|+||||||||||.+.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999997643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.25 E-value=0.001 Score=64.58 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.|++++|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.00011 Score=73.83 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.7
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
+++.++.+.+| +++|+|||||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56777888777 99999999999999999996
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0071 Score=63.23 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHhhCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHhhC-CCEEEEEecC
Q 001146 707 ELVANPSIIFMDEPTS---G--LDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 752 (1140)
Q Consensus 707 al~~~p~illlDEPts---g--LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~ 752 (1140)
.-..+|+++++|--+. + -|......+++.|+++++. |.++|++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995542 1 2556667788888887654 8888888774
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0011 Score=64.04 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|+|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.13 E-value=0.048 Score=54.85 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=25.5
Q ss_pred eeCc-eEEEeCceEEEEeCCCCCChHHHHHHH
Q 001146 570 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVL 600 (1140)
Q Consensus 570 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~l 600 (1140)
|+++ ++-+++|+++.|.|++|+|||||.--+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 5553 456999999999999999999997543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0014 Score=63.31 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.1
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.00062 Score=68.86 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.3
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|+.++++|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 47788999999999999999998853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.89 E-value=0.0017 Score=63.00 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|-++.|+|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998643
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.73 E-value=0.05 Score=55.15 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred hCCcEeEEeCCCC---CCCHHHHHHHHHHHHHHh-hCCCEEEEEecCC---------CHHHHHhhceEEEEe
Q 001146 710 ANPSIIFMDEPTS---GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMK 768 (1140)
Q Consensus 710 ~~p~illlDEPts---gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~---------~~~~~~~~d~v~~l~ 768 (1140)
.+|++++.|--+. +.+.......+..|.+++ +.+.+++++.|.. +..+...+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999996443 446666555565555554 4588999888742 112445788888885
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0023 Score=64.01 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.|.++.|+||||+|||||.+.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999998754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.51 E-value=0.003 Score=60.92 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|-.++|.||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.46 E-value=0.0033 Score=59.23 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.42 E-value=0.0028 Score=61.75 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..++|.||+|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.41 E-value=0.0033 Score=60.49 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|+|++|||||||++-|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999988764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.25 E-value=0.0042 Score=59.93 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.+++.|.||+||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.21 E-value=0.0039 Score=61.67 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.20 E-value=0.0044 Score=59.46 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0039 Score=60.57 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.08 E-value=0.0045 Score=59.50 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.|+||+||||||+.+.|+-+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.94 E-value=0.004 Score=60.96 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.88 E-value=0.0052 Score=60.48 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
++||-||+|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0057 Score=58.01 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.82 E-value=0.0057 Score=59.62 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.81 E-value=0.0062 Score=59.22 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.004 Score=61.26 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.|-++.|+|++||||||+.+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.0061 Score=59.85 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997643
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0072 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.66 E-value=0.0072 Score=59.59 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0074 Score=58.73 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+.|+||||+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.55 E-value=0.0066 Score=62.06 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
+++|+||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0076 Score=60.01 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.009 Score=57.80 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.0087 Score=58.91 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+||||||||||.+.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.31 E-value=0.01 Score=57.56 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|+|++|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.29 E-value=0.0067 Score=59.00 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+||+|++|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.23 E-value=0.0095 Score=56.86 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.|+|++||||||+.+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.011 Score=58.36 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.15 E-value=0.01 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-+||+|++|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.13 E-value=0.0083 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|||||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.012 Score=55.74 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
=-++|+|++|+|||||++.|+|..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.08 E-value=0.0099 Score=56.06 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999873
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.07 E-value=0.0083 Score=59.17 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.1
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.+.++.|+||+||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.01 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.04 E-value=0.054 Score=59.61 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=38.2
Q ss_pred HHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 703 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 703 ~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
++..+|=.+|++++.+|.. |.+++...+ +.+..|+.|+.+.|-.+ .....+|+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 3555667799999999997 666665544 44667999999999765 34444554
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.012 Score=58.80 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++||-||+||||||+.+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.014 Score=58.07 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.4
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999887764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.87 E-value=0.011 Score=56.87 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+.|+|++||||||+-+.|+-..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.86 E-value=0.011 Score=56.06 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.81 E-value=0.014 Score=57.17 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|--+.|+||+||||||+-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667889999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.66 E-value=0.016 Score=55.96 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998853
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.66 E-value=0.013 Score=57.46 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.65 E-value=0.014 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.015 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.54 E-value=0.015 Score=56.31 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.50 E-value=0.016 Score=55.15 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999884
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.0095 Score=57.86 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.44 E-value=0.016 Score=56.28 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999998653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.15 E-value=0.018 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
...+.|.||+|||||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.09 E-value=0.021 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.05 E-value=0.019 Score=55.71 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.97 E-value=0.022 Score=56.49 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChHHHHHHHhc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+++++|.+|||||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.96 E-value=0.022 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|-||+||||||+-+.|+-..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.89 E-value=0.02 Score=59.07 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.81 E-value=0.0077 Score=57.15 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.68 E-value=0.022 Score=56.54 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.024 Score=54.87 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.51 E-value=0.025 Score=55.32 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChHHHHHHHh
Q 001146 582 LTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~ 601 (1140)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999995
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.51 E-value=0.026 Score=54.62 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|+||+||||||+-+.|+-.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.46 E-value=0.026 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.43 E-value=0.032 Score=55.48 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=23.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++|.++-|.|.|||||||+.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.029 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|.||+||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.28 E-value=0.033 Score=55.12 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999877765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.28 E-value=0.029 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.031 Score=54.09 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.029 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
..-.+||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.06 E-value=0.03 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988763
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.06 E-value=0.03 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.033 Score=55.41 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|-+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.042 Score=55.67 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999999877653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.70 E-value=0.026 Score=60.11 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.3
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcC
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 606 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~ 606 (1140)
.-++.|.-+.|.||.||||||||+.|.+..++
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 34456677999999999999999999986543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.082 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+|++|+|||||++-+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.48 E-value=0.037 Score=53.04 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999997753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.38 E-value=0.23 Score=50.95 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.6
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-++.|.++-|-||+|||||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 6889999999999999999999877765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.35 E-value=0.042 Score=54.49 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=21.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++..+++++||+|+||||.+-=|+-+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999988777653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.34 E-value=0.044 Score=55.82 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.6
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
+-+++|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999976543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.26 E-value=0.041 Score=52.49 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.041 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.046 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+|.+++|-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.16 E-value=0.046 Score=58.14 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
..-.++|.||+|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.15 E-value=0.04 Score=60.70 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.14 E-value=0.048 Score=53.97 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChHHHHHHHh
Q 001146 582 LTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~ 601 (1140)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.11 E-value=0.056 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998888753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.038 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++.+++|-|+-||||||+++.|+....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999987543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.04 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.053 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCc
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.+.|.||+|+||||+.++|+....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.047 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++||-|++||||||+.+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 8999999999999999998753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.86 E-value=0.033 Score=57.77 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999999865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.86 E-value=0.049 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|.||+|+||||+.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.86 E-value=0.048 Score=51.69 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.83 E-value=0.046 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|+.-+.++||+|+|||+|.++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.049 Score=52.26 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998766
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.72 E-value=0.052 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEeCCCCCChHHHHHHHhcCCc
Q 001146 583 TALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
+.+.||+|+||||+.++|+....
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999987543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.60 E-value=0.11 Score=49.58 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=25.6
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++.....+ .|.=+.|.||||+|||||.-.|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55555555 788999999999999999877754
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.59 E-value=0.054 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999873
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.58 E-value=1.3 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.45 E-value=0.056 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-.+++++||+|+||||.+-=|+-+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999988877753
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.39 E-value=0.071 Score=53.89 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.4
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+-+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999999999877754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.32 E-value=0.063 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|.+++|=|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999998644
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.052 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.21 E-value=0.061 Score=55.39 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.065 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.20 E-value=0.055 Score=54.80 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.18 E-value=0.065 Score=52.98 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=16.4
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
...+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999877774
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.067 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.5
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998853
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.061 Score=51.43 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.07 E-value=0.056 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.073 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.-+.|.||+|+|||+|.+.|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 457899999999999999999643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.072 Score=50.92 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.079 Score=53.82 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+||||+.--++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999877753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.073 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.76 E-value=0.053 Score=52.35 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++-+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.063 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.063 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999876
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.59 E-value=0.096 Score=48.98 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.4
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
..+||.+++|-|+=||||||+.|.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999975
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.07 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.55 E-value=0.076 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-+.|.||+|+|||++.+.|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 35789999999999999999874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.53 E-value=0.07 Score=51.55 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.4
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.076 Score=53.46 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|.||+|+||||++++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.29 E-value=0.14 Score=48.84 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=24.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|+..- -.-.|.=++|.|+||+|||||.-.|..+
T Consensus 5 lH~~~-v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 5 MHGVL-VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEE-EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEE-EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 44333 3456788999999999999998877643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.078 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|.+|+|||||++-+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.098 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.787 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|.+|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999999874
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.04 E-value=0.081 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.078 Score=50.04 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|.+|+|||||++-+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.085 Score=50.58 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.7
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.73 E-value=0.073 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998643
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.19 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977663
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.65 E-value=0.09 Score=49.84 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.62 E-value=0.087 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+.||+|+|||+|.+.|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999743
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.60 E-value=0.087 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+..-+.|.||+|+|||+|.+.+++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 44458899999999999999999854
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.083 Score=51.56 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.095 Score=49.64 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.09 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+.|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998763
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.17 E-value=0.11 Score=52.05 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.7
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.|-||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678999999999999999863
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.04 E-value=0.12 Score=50.84 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|-|+-||||||+++.|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.097 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.90 E-value=0.076 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=8.6
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997775
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.86 E-value=0.12 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
...+.|.||+|+||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999998654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.80 E-value=0.081 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988663
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.75 E-value=0.12 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999988753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.11 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.72 E-value=0.2 Score=47.42 Aligned_cols=32 Identities=31% Similarity=0.216 Sum_probs=25.1
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+. ++-.-.|.=+.|.|+||+|||||.-.|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 555 44456788999999999999998866654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.1 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.68 E-value=0.11 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.11 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.12 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.13 Score=48.88 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|++|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.95 E-value=0.13 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.87 E-value=0.13 Score=48.75 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.2
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
+.++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998876
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.83 E-value=0.14 Score=52.88 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.7
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+.+-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4778999999999999999999999975
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.82 E-value=0.13 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.|.||+|+|||+|.+.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.55 E-value=0.15 Score=50.97 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=26.8
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 712 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
.+++++||.- .+.......+.+.|.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 4699999974 6777777777777765432 344555665544
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.52 E-value=0.14 Score=54.38 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+||+|.+.+|||||+|.|+|.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=0.15 Score=52.67 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=26.1
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|+.++-.| -+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554322 589999999999999999999854
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.16 E-value=0.14 Score=52.03 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
+.+++++||.-. |.......+.+.+.+- .....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence 567999999965 7777777666666543 22456788888876
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.99 E-value=0.17 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.71 E-value=0.16 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.59 E-value=0.17 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.45 E-value=0.18 Score=48.90 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=17.9
Q ss_pred EEEEeCCCCCChHHHHHHHh
Q 001146 582 LTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~ 601 (1140)
-+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999984
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.43 E-value=0.14 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.|.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4667799999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.88 E-value=0.16 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+||+|.+.+|||||+++|++.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999973
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.76 E-value=0.26 Score=50.41 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.1
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|.++-|.||+|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6899999999999999999999766654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.18 Score=48.83 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++-+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.55 E-value=0.21 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-+.|+|++|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998753
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=0.24 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|...+.++||+|+|||.|.+.|+-.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4456889999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.24 E-value=0.15 Score=52.32 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=30.4
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc-CCcCceEEEEEEEcCcc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYP 619 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~ 619 (1140)
+-++.|.++-|.||+|+|||||.-.++. ....+. --+++|.+.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCC--EEEEEECCc
Confidence 5789999999999999999999654443 112121 246777664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.19 E-value=0.21 Score=47.76 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=17.7
Q ss_pred EEEeCCCCCChHHHHHHHhc
Q 001146 583 TALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g 602 (1140)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.74 E-value=0.23 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|.-+||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.50 E-value=0.23 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|.-.||||||+|.|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.07 E-value=0.3 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCChHHHHHHHhc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.52 E-value=0.25 Score=54.60 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=27.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 635 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~ 635 (1140)
-+.++||+|+|||-|.+.|++...- | -+..+....+ ..|||-.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-C---EEEeecceee------ecceeecc
Confidence 5889999999999999999985431 1 2334443332 26787765
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.78 E-value=0.29 Score=50.09 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChHHHHHHHh
Q 001146 582 LTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~ 601 (1140)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.50 E-value=0.3 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+||||-+.+|||||++.|++.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999974
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.23 E-value=0.35 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
-++|+|..++|||||++.|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999964
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=80.20 E-value=0.4 Score=50.23 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.2
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+-+-...++| .+.+.||+|+|||.|.+.|++..
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 33333455555 66678999999999999999853
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.03 E-value=0.35 Score=51.88 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=24.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
+++..+.+.||+|+||||+.+.|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999998654
|