Citrus Sinensis ID: 001148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------114
MDPPCPLPSTSPSLHLRPPSSSVLLKDISNFKTPKRPSQPPNFQSPCPQKYFTASKNTPKNLSSLYRRGLSSARSKSTKTKTAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGKGKREGGEVMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSAVRENLERRLREAAEILKLIKHA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
ccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccEEEccccccccccEEEccccHHHcccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHccccEEEEEccHHHHHEEEHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHccHHcccHHcccHHHHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHcccccccHHHcccccHHHHHcEccccccEEEEEccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHHHHHHHHccc
mdppcplpstspslhlrppsssvllkdisnfktpkrpsqppnfqspcpqkyftaskntpknLSSLYRRGlssarskstkTKTAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNFLlenpkscgcdkfdsgnvgavavgkgkreggevmtwrdpkrqrdacwrgdsdeiesegavsesKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTkniddgrlqmkshcpivtdfgmkEKATNILLCYNSVWLRIGLYILFggdsllsnedvnTCQEMEFLKMMIEKQFFTHAGLAKAFAYNknveglyrpgyyEALGSVILKRVLLLVLILDRaksqsllplkygidgvdggsplLFSVQSNVKSSRQVIVDFLSsevmhgegnLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQdssiltkivvpsdthrknsvnCSIALQYLRQAGVklydedgtaimeddvangDKELILSLLWNMFVHLQLPLMINKKHLTEEICKirgtnmdnlnIFDSALLDLLLNWIQVICEKYdfrinnfssltdgKAIWCLLDfyfrkepcgsctskvlQMSDilehngacsdkSVVILLVFLSSQLIVKKNMDQlnlhkllgcncqsperrhsnpncrivdsealpdqeenghsTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLqnfstdksninMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCistpdllsgatdeQKYLHSYAEIDKAsimcqeksdsdvGIKAALKIQSSWRNFIASRSLQKNYFAATMIQshfrssshhraaipsgsnfntlrgcfqSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTldmatensQNCCEKLVAAGAVDTLLKLIGsvsrsmpdQEVLKHALSTLrnlaryphLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSAVRENLERRLREAAEILKLIKHA
mdppcplpstspslhlrppsSSVLLKDISNFktpkrpsqppnfqSPCPQKYFtaskntpknLSSLyrrglssarskstktktaaarrlksleveqsksayksqlkkeqslKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVavgkgkreggevmtwrdpkrqrdacwrgdsdeiesegavseskystLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKniddgrlqmKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLllqdssiltkivvpsdthrknsvnCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSealpdqeenghSTEDAVRKFKSLQAWWQKMAEqnnrsasqrlSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLlklktksaiiiqshirgwtARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQIsatnmdeemRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDeltrkqslekrnarnsavrenlerRLREAAEILKLIKHA
MDppcplpstspslhlrppsssvllKDISNFKTPKRPSQPPNFQSPCPQKYFTASKNTPKNLSSLYRRGLssarskstktktaaarrLKSLEVEQSKSAYksqlkkeqslkslskslTVWLNFLLENPKSCGCDKFDSgnvgavavgkgkreggevMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSvilkrvlllvlilDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQshfrssshhrAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSavrenlerrlreaaeilklIKHA
*******************************************************************************************************************SLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGK**********************************************LNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNC***************************************LQAWW******************************MERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHF*********IPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSL*****************************************
******************************************************************************************************************KSLTVWLNFLLENPKSCGCDKF*********************TWRDPKR**********************KYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGD***************FLKMMIEKQFFTHAGLAK**********LYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSS*********DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEIC*******************LLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNAR*********RRLREAAEILKLIK**
****************RPPSSSVLLKDISNFK************SPCPQKYFTASKNTPKNLSSLY*********************LKSLEV*****************KSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGKGKREGGEVMTWRDPK***************************LRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALP***********AVRKFKSLQAWWQKM****************QNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQS**********AIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSAVRENLERRLREAAEILKLIKHA
********************************************SPCPQ*********************************************QSKSAY*S**KKEQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGKGKREGGEVMTWRDPKR**********************KYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKR************RRLREAAEILKLIKH*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPPCPLPSTSPSLHLRPPSSSVLLKDISNFKTPKRPSQPPNFQSPCPQKYFTASKNTPKNLSSLYRRGLSSARSKSTKTKTAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGKGKREGGEVMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1139 2.2.26 [Sep-21-2011]
Q8CJ27 3122 Abnormal spindle-like mic yes no 0.604 0.220 0.267 5e-45
P62286 3469 Abnormal spindle-like mic yes no 0.451 0.148 0.288 1e-42
P62285 3371 Abnormal spindle-like mic yes no 0.345 0.116 0.303 2e-42
P62288 3461 Abnormal spindle-like mic N/A no 0.424 0.139 0.287 7e-42
P62290 3477 Abnormal spindle-like mic N/A no 0.345 0.113 0.307 3e-41
P62297 3374 Abnormal spindle-like mic N/A no 0.344 0.116 0.304 4e-41
P62287 3477 Abnormal spindle-like mic N/A no 0.330 0.108 0.304 2e-40
P62294 3471 Abnormal spindle-like mic N/A no 0.345 0.113 0.303 2e-40
Q8IZT6 3477 Abnormal spindle-like mic no no 0.345 0.113 0.303 2e-40
P62283 3473 Abnormal spindle-like mic N/A no 0.562 0.184 0.263 3e-40
>sp|Q8CJ27|ASPM_MOUSE Abnormal spindle-like microcephaly-associated protein homolog OS=Mus musculus GN=Aspm PE=2 SV=2 Back     alignment and function desciption
 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 214/800 (26%), Positives = 363/800 (45%), Gaps = 112/800 (14%)

Query: 178  ESEGAVSESKYSTLRK-SLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRL 236
            ES+  +S  K  T  + SL +  +   LN+  R   SL   +++   + +V   I+ GRL
Sbjct: 703  ESQHKISVPKAPTKEEVSLRAYTASCRLNRLRRTACSLFTSEKMVKAIKKVEIEIEVGRL 762

Query: 237  QMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGG-DSLLSNEDVNTCQEMEFLK 295
             ++    +  D G ++K  N LL YN +WLRIGL  +FG    L  N DV        L 
Sbjct: 763  LVRKDRHLWKDIGQRQKVLNWLLSYNPLWLRIGLETVFGELIPLADNSDVTG------LA 816

Query: 296  MMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLP 355
            M I  +   +  +A  + +   V  L+R G+  AL    LK++LLL+  LD AK      
Sbjct: 817  MFILNRLLWNPDIAAEYRH-PTVPLLFRDGHEAALSKFTLKKLLLLICFLDHAK------ 869

Query: 356  LKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQC 415
                I  +    P LF   +  K+S+++++ F S + + GEG+L  HL  +G  VS+ Q 
Sbjct: 870  ----ISRLIDHDPCLFCKDAEFKASKELLLAF-SRDFLSGEGDLSRHLSFLGLPVSHVQT 924

Query: 416  LLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYL 475
             L E+DF VTNL VDLQ GVRL R V+LL Q+ ++  K+ +P+ +  +   N  + LQ L
Sbjct: 925  PLDEFDFAVTNLAVDLQCGVRLVRTVELLTQNWNLSDKLRIPAISRVQKMHNVDLVLQVL 984

Query: 476  RQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGT 535
            +  GV L DE G+AI   DV +  +E  L LLW + +  Q+ + +N   L EEI  ++ T
Sbjct: 985  KSRGVPLTDEHGSAISSKDVVDRHREKTLGLLWKIALAFQVDISLNLDQLKEEIDFLKHT 1044

Query: 536  N-----MDNLNIFDSAL-------------------LDLLLNWIQVICEKYDFRINNFS- 570
            +     M  L     A+                   + LL++W+  +C  Y+ ++ NF+ 
Sbjct: 1045 HSIKRAMSALTCPSQAITNKQRDKRISGNFERYGDSVQLLMDWVNAVCAFYNKKVENFTV 1104

Query: 571  SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVK 630
            S +DG+ +  L+  Y    PC      + Q +     + AC+    V+    L+S    +
Sbjct: 1105 SFSDGRILCYLIHHY---HPCYVPFDAICQRTS---QSVACAQTGSVV----LNSSSESE 1154

Query: 631  KNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEENGHSTEDAVRKFKSLQAWW 690
                 L+L  L   +  +PE          +  E L ++++N H    A R    + A  
Sbjct: 1155 GGCLDLSLEAL--DHESTPE----------MYKELLENEKKNFHLVRSAARDLGGIPAMI 1202

Query: 691  QKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRN 750
               ++ +N    +++  T  +F   +  +++ + I        AA++I+  +R +  +R+
Sbjct: 1203 HH-SDMSNTIPDEKVVITYLSFLCARL-LDLRKEI-------RAARLIQTTWRKYKLKRD 1253

Query: 751  FLKMR---NAAR---SILLHCISTPDL---LSGATDEQKYLHSYAEIDKASIMCQEKSDS 801
                +    AAR   S++L+ +S   L   +S A   QK     +   K  ++  EK  +
Sbjct: 1254 LKHHQERDKAARVIQSVVLNFLSRRRLQKNVSAALVIQKCWRRVSAQRKLRMLKNEKL-A 1312

Query: 802  DVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRS-----------------SSHH 844
             +  K+A+ IQ+ WR +   +   +    + ++QS  R                    H 
Sbjct: 1313 KLQNKSAVLIQAYWRRYSTRKRFLRLKHYSVILQSRIRMKIALTSYKRYLWATVTIQRHW 1372

Query: 845  RAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWT 904
            RA +    +    R    S  +  F+F      R WK    L+L+TK+A+ +Q   R W 
Sbjct: 1373 RAYLSRKRDQQIFRKLKSSSLVIQFMF------RRWKR-RKLQLQTKAAVTLQRAFREWH 1425

Query: 905  ARRRAYKEKHHIVLIQSYWR 924
             R++    +   V+IQS++R
Sbjct: 1426 LRKQI--RERSAVVIQSWYR 1443
Probable role in mitotic spindle regulation and coordination of mitotic processes. May have a preferential role in regulating neurogenesis.
Mus musculus (taxid: 10090)
>sp|P62286|ASPM_CANFA Abnormal spindle-like microcephaly-associated protein homolog OS=Canis familiaris GN=ASPM PE=2 SV=2 Back     alignment and function description
>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2 SV=1 Back     alignment and function description
>sp|P62288|ASPM_FELCA Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Felis catus GN=ASPM PE=2 SV=1 Back     alignment and function description
>sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associated protein homolog OS=Hylobates lar GN=ASPM PE=3 SV=1 Back     alignment and function description
>sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Ovis aries GN=ASPM PE=2 SV=1 Back     alignment and function description
>sp|P62287|ASPM_COLGU Abnormal spindle-like microcephaly-associated protein homolog OS=Colobus guereza GN=ASPM PE=3 SV=1 Back     alignment and function description
>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated protein homolog OS=Pongo pygmaeus GN=ASPM PE=2 SV=1 Back     alignment and function description
>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated protein OS=Homo sapiens GN=ASPM PE=1 SV=2 Back     alignment and function description
>sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associated protein homolog OS=Aotus vociferans GN=ASPM PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1139
147775497 1251 hypothetical protein VITISV_038718 [Viti 0.797 0.725 0.513 0.0
296083522943 unnamed protein product [Vitis vinifera] 0.749 0.905 0.527 0.0
28945601088 putative protein [Arabidopsis thaliana] 0.899 0.941 0.447 0.0
3594972401022 PREDICTED: LOW QUALITY PROTEIN: abnormal 0.783 0.872 0.5 0.0
255554929 1282 hypothetical protein RCOM_0905210 [Ricin 0.758 0.673 0.533 0.0
449454871 1368 PREDICTED: abnormal spindle-like microce 0.627 0.522 0.553 0.0
449488448 1291 PREDICTED: LOW QUALITY PROTEIN: abnormal 0.769 0.678 0.481 0.0
240256033 1255 binding / calmodulin binding protein [Ar 0.765 0.694 0.468 0.0
357480257 1503 Abnormal spindle-like microcephaly-assoc 0.765 0.580 0.438 0.0
2978039541198 hypothetical protein ARALYDRAFT_492692 [ 0.779 0.741 0.446 0.0
>gi|147775497|emb|CAN71702.1| hypothetical protein VITISV_038718 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1052 (51%), Positives = 687/1052 (65%), Gaps = 144/1052 (13%)

Query: 4    PCPLPSTSPSLHLRPPSSSVLLKDISNFKTPKRPSQPPNFQSPCPQKYFTASKNTPKNLS 63
            PCP    SPS ++   SSS  LKDISNFKTPK+ S+ P+F SP PQ +FTASK TP++ +
Sbjct: 8    PCP----SPSPNVCCSSSSSFLKDISNFKTPKQSSKNPSFHSPFPQ-FFTASKQTPRSSA 62

Query: 64   SLYRRGLSSARSKSTKTKTAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNF 123
            S +R   S A S S   K+ AARRLK+ E+EQS+S+ K+Q+KKE+SLKSL+KSLTVWLNF
Sbjct: 63   SAFRHRPSLAPSSS---KSKAARRLKAFEMEQSQSSRKAQIKKEKSLKSLAKSLTVWLNF 119

Query: 124  LLENPKSCGCD--KFDSGNVGAVAVGKGKRE---GGEVM---TWRDPKRQRDACWRGDSD 175
            L ENP+SCGCD  +    +     +  GKR+   GG V     WR PKRQRD+ W+GD  
Sbjct: 120  LFENPESCGCDVSRLVGVDQSRSVLANGKRDSWPGGGVGINGAWRSPKRQRDSMWQGDGG 179

Query: 176  EIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGR 235
                 G      +S+L+ SL  +CS +DL QRMR+Y+SLG CKEIF +M++V KNID+GR
Sbjct: 180  GDSDAGMFPSLMFSSLQLSLKEVCSFDDLKQRMRVYLSLGTCKEIFKVMTQVAKNIDEGR 239

Query: 236  LQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLK 295
            L+MK+HCPIVTD GMKEKA  IL+CYN +WLRIGLYI+FGGDSLL NEDVN+ +E+  LK
Sbjct: 240  LKMKAHCPIVTDVGMKEKAIKILMCYNPIWLRIGLYIIFGGDSLLPNEDVNSDEEITLLK 299

Query: 296  MMIEKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLP 355
            M+IEKQFF+H GLAKA+AYNK VEGLYRPGY+E +G+VILKR LLLVLILDRAKSQS LP
Sbjct: 300  MIIEKQFFSHVGLAKAYAYNKLVEGLYRPGYFETMGNVILKRFLLLVLILDRAKSQSCLP 359

Query: 356  LKYGIDGVDGGSPLLFSVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQC 415
            +KYGIDGVDGGSPLLFS +SN+KSSRQ+I DFLSS++MHGEGNL AHL+IVGYKVSY+QC
Sbjct: 360  IKYGIDGVDGGSPLLFSQRSNIKSSRQIIHDFLSSDIMHGEGNLLAHLVIVGYKVSYEQC 419

Query: 416  LLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYL 475
             L EYDFRVT+LF DLQDGVRL R +QLLL DSSIL K+VVPSDTH+KN  NC IALQYL
Sbjct: 420  CLTEYDFRVTDLFDDLQDGVRLCRTIQLLLHDSSILVKMVVPSDTHKKNLANCGIALQYL 479

Query: 476  RQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGT 535
            +QAGV LYD+DG  I+ +DVANGDKEL LSLLWN+FVHLQLPL+INK  L EEI KIRG 
Sbjct: 480  KQAGVSLYDDDGMVIVGEDVANGDKELTLSLLWNIFVHLQLPLLINKTLLFEEISKIRGA 539

Query: 536  NMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKE------ 589
            ++D      S+ L++LL WIQ +CE YDF+I NF+SL DGKA+WCLLD+YFRKE      
Sbjct: 540  DVDISKNDISSPLEMLLKWIQAVCESYDFKIENFASLVDGKAMWCLLDYYFRKELHCSRS 599

Query: 590  --------------PCGSCTS-------------------KVLQMSDILEHNGACSDKSV 616
                              CT                    +VLQ SDILEHNGAC+D+SV
Sbjct: 600  YNDPNERNGXKSIISATDCTDAAHNFILSQKLTTLLGNFPEVLQTSDILEHNGACNDRSV 659

Query: 617  VILLVFLSSQLIVKKNMDQLNLHKLLGCNCQSPERRHSNPNCRIVDSEALPDQEE-NGHS 675
            VILLVFLSSQL+VK+N DQLN HKLLGC CQ PE + S+     +  +A+ +QEE  G +
Sbjct: 660  VILLVFLSSQLVVKRNTDQLNFHKLLGCTCQIPEGKRSSMGRLFMSYKAVENQEETGGQN 719

Query: 676  TEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERA----------I 725
             ED V+KFK++QAWWQ M EQN++   + ++ST + FS DK   +++R            
Sbjct: 720  AEDTVQKFKAIQAWWQNMVEQNHKCYVKPVASTSECFSADKCCTDIQRGRLKQLETFGRY 779

Query: 726  DVLMLP-------GNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGA--- 775
             + M+         ++  +I+   R WI R      ++  R++L    S+PD +  A   
Sbjct: 780  IIFMVDRHGFVKLKSSTLLIQKAVRRWISR------KHQGRNMLAQDPSSPDPVKAASFD 833

Query: 776  -------TDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNY 828
                   T   KY  + ++++K+S + QEK  +D+ IKAA+KIQ +WRNF    S +  Y
Sbjct: 834  RRCTYEWTSRPKYTCTLSQMEKSSFIFQEKEMNDLRIKAAVKIQLAWRNFSVCNSHRNEY 893

Query: 829  FAATM-----------------------IQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFE 865
             AAT                        IQSHFR     ++ +        ++G F+ + 
Sbjct: 894  TAATQIQCCFRGWLLRRSFVQKKQAVINIQSHFRGWLLRKSFVKKKQTVRKIQGAFRGWL 953

Query: 866  LSIFLF---SVVKLQ---RWW--------------------------KNVLLLKLKTKSA 893
            L   +    + +KLQ   R W                          +N  + K+ TKSA
Sbjct: 954  LRNLVKKQQAAIKLQSAFRGWSLRRSFVKKQQAAIKIQSDFRGLKCQRNFQIYKIATKSA 1013

Query: 894  IIIQSHIRGWTARRRAYKEKHHIVLIQSYWRG 925
            II+QSH+RGW AR+   + +H IV+IQS+ RG
Sbjct: 1014 IIMQSHLRGWIARKAVCRLRHQIVVIQSHCRG 1045

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083522|emb|CBI23512.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|2894560|emb|CAA17149.1| putative protein [Arabidopsis thaliana] gi|7269027|emb|CAB79137.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359497240|ref|XP_003635461.1| PREDICTED: LOW QUALITY PROTEIN: abnormal spindle-like microcephaly-associated protein homolog, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554929|ref|XP_002518502.1| hypothetical protein RCOM_0905210 [Ricinus communis] gi|223542347|gb|EEF43889.1| hypothetical protein RCOM_0905210 [Ricinus communis] Back     alignment and taxonomy information
>gi|449454871|ref|XP_004145177.1| PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488448|ref|XP_004158043.1| PREDICTED: LOW QUALITY PROTEIN: abnormal spindle-like microcephaly-associated protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|240256033|ref|NP_193913.4| binding / calmodulin binding protein [Arabidopsis thaliana] gi|332659107|gb|AEE84507.1| binding / calmodulin binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357480257|ref|XP_003610414.1| Abnormal spindle-like microcephaly-associated protein-like protein [Medicago truncatula] gi|355511469|gb|AES92611.1| Abnormal spindle-like microcephaly-associated protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297803954|ref|XP_002869861.1| hypothetical protein ARALYDRAFT_492692 [Arabidopsis lyrata subsp. lyrata] gi|297315697|gb|EFH46120.1| hypothetical protein ARALYDRAFT_492692 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1139
TAIR|locus:2141657 1255 AT4G21820 "AT4G21820" [Arabido 0.764 0.694 0.433 1.7e-264
MGI|MGI:1334448 3122 Aspm "asp (abnormal spindle)-l 0.202 0.073 0.337 5.2e-50
UNIPROTKB|P62286 3469 ASPM "Abnormal spindle-like mi 0.227 0.074 0.329 9.3e-49
ZFIN|ZDB-GENE-050208-620 3411 aspm "asp (abnormal spindle)-l 0.201 0.067 0.326 3.3e-46
UNIPROTKB|F1S640 2620 ASPM "Uncharacterized protein" 0.201 0.087 0.305 1.1e-44
RGD|1307111 2304 Aspm "asp (abnormal spindle) h 0.209 0.103 0.324 4.5e-44
UNIPROTKB|P62285 3371 ASPM "Abnormal spindle-like mi 0.201 0.068 0.322 3.7e-43
UNIPROTKB|F1MM80 3461 ASPM "Abnormal spindle-like mi 0.201 0.066 0.322 5.3e-43
UNIPROTKB|Q8IZT6 3477 ASPM "Abnormal spindle-like mi 0.212 0.069 0.326 5.6e-42
UNIPROTKB|F1P153 2006 ASPM "Uncharacterized protein" 0.196 0.111 0.326 5.9e-28
TAIR|locus:2141657 AT4G21820 "AT4G21820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1742 (618.3 bits), Expect = 1.7e-264, Sum P(2) = 1.7e-264
 Identities = 401/924 (43%), Positives = 548/924 (59%)

Query:    27 DISNFKTPKRPSQP-PNF-QSPCPQKYFTASKNTPKNLSSLYRRGLXXXXXXXXXXXXXX 84
             DISNFKTP+R S    N  +SP P  +FTASK TPK+ SS +RR                
Sbjct:    24 DISNFKTPRRTSVVNSNISKSPYPH-FFTASKQTPKSSSSNFRRPSMVHSYASRSKVSTS 82

Query:    85 XXXLKSLEVEQSKSAYXXXXXXXXXXXXXXXXXTVWLNFLLENPKSCGCDKFDSXXXX-- 142
                LK+ E++QS+S+                  TVWLNFL ENP++CGCD F++      
Sbjct:    83 SRRLKAFELQQSQSSRKAELTKEKNLRSLAKSLTVWLNFLFENPENCGCDPFENESGVGN 142

Query:   143 -------XXXXXXXXXXXXXXMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSL 195
                                    WR PKR R+  W G+    E + +++ SKYSTLR+SL
Sbjct:   143 LGKGKRDSGEALGNSKSVGVDTMWRSPKRLRNLGWCGEKKRSEIDSSLTGSKYSTLRESL 202

Query:   196 NSICSLEDLNQRMRIYMSLGCCKEIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKAT 255
               +CSL+DL QRM+ ++SLG CKEIFD+M+RV+KNID+GR++MK  CP+VTDFGMKEKA 
Sbjct:   203 RDVCSLDDLKQRMQFHLSLGSCKEIFDVMTRVSKNIDEGRIKMKPQCPLVTDFGMKEKAI 262

Query:   256 NILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMIEKQFFTHAGLAKAFAYN 315
               L+ YN VWLR+GLYI+FGGDS LS+ +VN+ QEM FLKM+I KQFF+H GLA+++ YN
Sbjct:   263 KALMSYNQVWLRLGLYIIFGGDSFLSDSEVNSDQEMAFLKMVISKQFFSHDGLARSYVYN 322

Query:   316 KNVEGLYRPGYYEALGSXXXXXXXXXXXXXDRAKSQSLLPLKYGIDGVDGGSPLLFSVQS 375
             K VEGLYRPGYYEALG+             DRAKSQS L LKYGIDG+DGGSPL+FS +S
Sbjct:   323 KMVEGLYRPGYYEALGNVILKRILLLVLVIDRAKSQSCLSLKYGIDGIDGGSPLMFSEKS 382

Query:   376 NVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGV 435
             ++KSS Q+I + LSS+VMHGEGNL AHL+I+GYK+ YQQ  L+EY+FRV  LF DLQDGV
Sbjct:   383 SIKSSHQLICELLSSDVMHGEGNLLAHLVIIGYKIPYQQSPLVEYNFRVRELFADLQDGV 442

Query:   436 RLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDV 495
             RL R +QLLL D SILTK+VVPSD  +KN  NC IALQYL+ AGV L D++G  I  +DV
Sbjct:   443 RLCRAIQLLLHDPSILTKMVVPSDNRKKNLANCRIALQYLKDAGVSLKDDEGMMITGEDV 502

Query:   496 ANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWI 555
             A+GD+EL +SLLWN+FVHLQLPL+IN + LTEEI K++G   +N  I  S  L++LLNWI
Sbjct:   503 ADGDRELTISLLWNIFVHLQLPLLINGRLLTEEIYKVQGVEQNN-QITMSTPLEMLLNWI 561

Query:   556 QVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKS 615
             Q    +   +  +  S TD       +  +   +   +      ++ D+LEHN   S++S
Sbjct:   562 QDPGGQEGPQ--SVMSNTDYHDA---VQNFILSQKLTALLGSFPEIGDLLEHNAVVSNQS 616

Query:   616 VVILLVFLSSQLIVKKNM----------------DQLNLHKLLGCNCQSPERRHSNPNCR 659
             V+ILL FLSS+LIVK+N+                +QLN HKLL  +CQ  E+R+S     
Sbjct:   617 VIILLAFLSSKLIVKENLLDFTLAGYLTNSVFSQEQLNFHKLLCSSCQVQEKRYSRIRIS 676

Query:   660 IVDSEALPDQEENGHSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNI 719
                SEA+  +E +  + EDA ++F++++AWWQ MA QN  S  +  S TLQ   + K   
Sbjct:   677 CSSSEAVTIEEPDRENGEDATKRFQAIKAWWQDMANQNQISVGKANSHTLQGSLSRKCTT 736

Query:   720 NMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQ 779
             + +RA   L+L   AA +I+ + RG   RR F   RN  R+I     +    LS      
Sbjct:   737 DSQRAY--LLLAEIAAVIIQSNIRGLHARRKF---RNKMRAICFLQAAVRTWLS--VKNI 789

Query:   780 KYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRS-LQKNYFAATMIQXXX 838
             + +  +  +++ ++   E+S       A LK  + +  FI  RS   K   + ++IQ   
Sbjct:   790 QVVEKF-NVEEVTLHLSERS-------ANLKPVARYVKFIVDRSRFIKLRKSVSVIQKAV 841

Query:   839 XXXXXXXAAIPSGSNFNTLRGCFQSF-ELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQ 897
                          +    ++  ++S+ E  I   ++    R W    + +    S+I+IQ
Sbjct:   842 RRHQSNLHHELKAAL--RIQLAWRSYKEKVISSITIQSYVRGWITRRMNRTYKFSSILIQ 899

Query:   898 SHIRGWTARRRAYKEKHHIVLIQS 921
              + RGW ARR+   ++   + IQS
Sbjct:   900 RYCRGWLARRKFCLQREATISIQS 923
GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
MGI|MGI:1334448 Aspm "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P62286 ASPM "Abnormal spindle-like microcephaly-associated protein homolog" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-620 aspm "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S640 ASPM "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307111 Aspm "asp (abnormal spindle) homolog, microcephaly associated (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P62285 ASPM "Abnormal spindle-like microcephaly-associated protein homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM80 ASPM "Abnormal spindle-like microcephaly-associated protein homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IZT6 ASPM "Abnormal spindle-like microcephaly-associated protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P153 ASPM "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1139
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 2e-06
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-05
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 2e-04
pfam0061221 pfam00612, IQ, IQ calmodulin-binding motif 0.001
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.001
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information 
 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 413 QQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIAL 472
            + L       + N   DL+DG+ L +++  L  D     KI   S   R    N ++AL
Sbjct: 11  NKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLE--NINLAL 68

Query: 473 QYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQ 515
            +  + GV + + D   ++ED    GD++L+L LLW++     
Sbjct: 69  NFAEKLGVPVVNFDAEDLVED----GDEKLVLGLLWSLIRKFL 107

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1139
KOG01651023 consensus Microtubule-associated protein Asp [Cyto 100.0
KOG0517 2473 consensus Beta-spectrin [Cytoskeleton] 100.0
COG5069612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.9
KOG0035 890 consensus Ca2+-binding actin-bundling protein (act 99.87
KOG0165 1023 consensus Microtubule-associated protein Asp [Cyto 99.76
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 99.71
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 99.62
smart00033103 CH Calponin homology domain. Actin binding domains 99.24
cd00014107 CH Calponin homology domain; actin-binding domain 99.19
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 98.96
KOG3631365 consensus Alpha-parvin and related focal adhesion 98.7
KOG0520975 consensus Uncharacterized conserved protein, conta 98.55
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.54
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.4
KOG0520975 consensus Uncharacterized conserved protein, conta 98.35
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 98.09
COG5022 1463 Myosin heavy chain [Cytoskeleton] 98.08
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 97.99
cd00014107 CH Calponin homology domain; actin-binding domain 97.89
COG5069612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 97.86
smart00033103 CH Calponin homology domain. Actin binding domains 97.63
COG5022 1463 Myosin heavy chain [Cytoskeleton] 97.41
KOG0518 1113 consensus Actin-binding cytoskeleton protein, fila 97.3
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 97.14
KOG3631365 consensus Alpha-parvin and related focal adhesion 97.01
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.96
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.9
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.06
smart0001526 IQ Short calmodulin-binding motif containing conse 95.89
KOG2128 1401 consensus Ras GTPase-activating protein family - I 95.89
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 95.85
PTZ00014821 myosin-A; Provisional 94.91
KOG2128 1401 consensus Ras GTPase-activating protein family - I 94.81
smart0001526 IQ Short calmodulin-binding motif containing conse 94.76
PTZ00014821 myosin-A; Provisional 94.71
KOG0516 1047 consensus Dystonin, GAS (Growth-arrest-specific pr 94.56
KOG2046193 consensus Calponin [Cytoskeleton] 94.55
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 93.19
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.68
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 90.48
KOG4427 1096 consensus E3 ubiquitin protein ligase [Posttransla 88.64
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 87.38
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 86.03
KOG4427 1096 consensus E3 ubiquitin protein ligase [Posttransla 84.83
KOG2996 865 consensus Rho guanine nucleotide exchange factor V 82.72
KOG4199461 consensus Uncharacterized conserved protein [Funct 80.45
KOG0942 1001 consensus E3 ubiquitin protein ligase [Posttransla 80.32
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-85  Score=755.97  Aligned_cols=955  Identities=11%  Similarity=-0.023  Sum_probs=750.2

Q ss_pred             CCCCCCCCccch-hHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCccCCCCCccccCC
Q 001148           70 LSSARSKSTKTK-TAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGK  148 (1139)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (1139)
                      |+++-++-..|+ ..+.|++|+|+++|++++||+++..|.- +++|+|.|+|+|+++.||+.|||+++..+ .|-...|+
T Consensus         2 dnnVedkkeamlkrlanRheKrlldQvksntkKidLrater-afLesSpTsmnmrtplNPsisssvsdspi-lsydekan   79 (1023)
T KOG0165|consen    2 DNNVEDKKEAMLKRLANRHEKRLLDQVKSNTKKIDLRATER-AFLESSPTSMNMRTPLNPSISSSVSDSPI-LSYDEKAN   79 (1023)
T ss_pred             CchhhhHHHHHHHHHhhHHHHHHHHHHhcccchhhhhHHHH-HHHhcCchHHhccCCCCccccCCCCCCcc-cccccccc
Confidence            455555555554 7889999999999999999999987776 99999999999999999999999987643 34567778


Q ss_pred             ccccC----------CcccccCChhhhhhhcccCCCcccccccccchhhHHHHHHHHHhhcchHhHHHHHHHhhcccccH
Q 001148          149 GKREG----------GEVMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCK  218 (1139)
Q Consensus       149 ~~~~~----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~r~~~y~~~~~~~  218 (1139)
                      |++|+          |++++|++|++.|..+|+++.|-.+-.+..+..++.|++.+|+.+|+++|++|+|....++..|.
T Consensus        80 kqiia~~~~~N~k~v~~~~m~~~~~~s~~~~~r~~~K~~~~~S~~~~~~~~T~~~~lR~~q~~~~~~q~~~~~~~~k~~~  159 (1023)
T KOG0165|consen   80 KQIIAMKVRQNLKNVSEEKMAAIVNQSALCCYRSKTKYEAVQSEGVMIQEWTKASGLRCSQEAEYHSQSRAAVTIQKAFC  159 (1023)
T ss_pred             cceeHHHHHhhhhhhhHHHHHhcccHHHHHHhhhhHHHHhhhccchhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            99888          88999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccCCceeeecCCCcccchhhhHHHHHHHhcCCHHHHHHHHHHhhcCCcCCCCCCcchhhHHHHHHHHH
Q 001148          219 EIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMI  298 (1139)
Q Consensus       219 ~v~~~~~~~~~~i~~~~l~~r~~~~~~~Dvgl~~~~l~~l~~y~p~wLr~gle~v~G~~~~~~~~~~~~~~~~~~l~~~i  298 (1139)
                      |+++++.++.+.|++|++.|++.|++++|+|+|++++..|+||||.|||.|||.|||+++.+++     +..+.+|++||
T Consensus       160 ~~~~~~~~v~k~~~~~~~~~~~~~~~~~DfG~q~~a~~tl~Sy~~~WL~~~L~~IF~~~~~~~~-----khlM~kL~~f~  234 (1023)
T KOG0165|consen  160 RMVTRKLETQKCAALRIQFFLQMAVYRRDFGQQKRAAITLQSYFRTWLTRKLFLIFRKAAVVLQ-----KHLMHKLRAFL  234 (1023)
T ss_pred             HHhhhhhHHHHHHHhhhHHHhhhchhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccchhcCc-----HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887765     47899999999


Q ss_pred             HHhhcCChhHHhhhhccCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCCCCCcccccCCccc
Q 001148          299 EKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVK  378 (1139)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~r~l~lv~~LD~Ak~~~~~~~~~~id~~~~~~p~LF~~~s~~K  378 (1139)
                      ...+|+||++++.|-+++++.|+|+++|.|||++++|++++.||+++|+|+.++.+|..|||||.+  +|..|.-++..|
T Consensus       235 s~~~FS~ptmlk~y~~~~s~~~ii~~~~kEAL~k~~L~~i~~L~~~I~~A~~~~~~~~~~~I~~~~--S~~~~~~d~~~~  312 (1023)
T KOG0165|consen  235 SAKHFSQPTMLKVYLQIRSSVIIIQARSKEALQKRKLQEIKNLTIKIQAAWRRYRAKKYLCIVKAA--SCKIQAWDYRCW  312 (1023)
T ss_pred             HHHHhcCchHHHHHHHhccCceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc--hHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999976  788888888888


Q ss_pred             cHHHHHHHHhccccccCCCChhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC
Q 001148          379 SSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS  458 (1139)
Q Consensus       379 sS~~~l~~~~~~~~l~g~gd~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~  458 (1139)
                      ++.+++..         .--..+.....||.+.|.|+.+..|++.-.-+--|.+||+.|-.+.|..........+.+.|+
T Consensus       313 ~sh~L~~G---------S~~~~k~~~~~~~~~~~rq~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a  383 (1023)
T KOG0165|consen  313 RAHKLYLG---------SLKAVKIIQGCFYTKLERQTRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQA  383 (1023)
T ss_pred             HHHHHHhh---------hHHHHHHHHhccceecchHhHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHh
Confidence            87777643         333566777899999999999999999877777799999999999987654444555678999


Q ss_pred             CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHHHHHHHHhhhhhh-hcccc-hhhHHHhhccCC
Q 001148          459 DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLM-INKKH-LTEEICKIRGTN  536 (1139)
Q Consensus       459 ~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLLW~li~~fqi~~l-~d~~~-l~~Ei~~l~~~~  536 (1139)
                      .+|+-+|.||.+.|..+.. |+...+     |..+-+|.||...|++..|.++.-++-..- ...+. +.++        
T Consensus       384 ~~r~~kI~~V~l~L~~~~s-gl~T~~-----~~~~~~Vg~~~~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~--------  449 (1023)
T KOG0165|consen  384 HYRGYKIRQVSLRLKSAAS-GLITQK-----YIRAREVGKHERIKYSEFKKSTVILQALVRGWLVRKRVEQR--------  449 (1023)
T ss_pred             HHHHhccceeEEEehhhhc-cccHHH-----HHHHHhhcccccchhHHHHHHHHHHHhcccceeechhhhhc--------
Confidence            9999999999999999984 777666     889999999999999999999877643310 00000 0000        


Q ss_pred             CCccccccccHHHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchh
Q 001148          537 MDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSV  616 (1139)
Q Consensus       537 ~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~  616 (1139)
                              .....+    .+                       +.+..+..+.+.|+ +|...   +|.-.+...+..|+
T Consensus       450 --------~~~~~~----~~-----------------------~~~~~~~l~aL~~~-~~y~~---~l~~~na~~~~~Sv  490 (1023)
T KOG0165|consen  450 --------AKIRLL----HF-----------------------TAAAYYHLNALRIQ-RAYKL---YLAVKNANKQVNSV  490 (1023)
T ss_pred             --------CCHHHH----HH-----------------------HHHHHHHHHHHhhh-hhhhH---HHHHHHhccccchh
Confidence                    000000    00                       01111111111222 33332   22222222344455


Q ss_pred             HHHHHhhhhHHHHhhhh----------------------hhcCccccccccCCCCCCccCCCceeccc-ccCCCCcccCC
Q 001148          617 VILLVFLSSQLIVKKNM----------------------DQLNLHKLLGCNCQSPERRHSNPNCRIVD-SEALPDQEENG  673 (1139)
Q Consensus       617 ~~~laF~~s~l~~k~~l----------------------~~lgi~~lL~v~~~~pd~r~~~mtyv~~~-~~~~~~~~~~~  673 (1139)
                      +.++||+.+.|..++++                      -++||++++..-|+...+|.. |...+-. .........+.
T Consensus       491 icLLA~L~s~l~~k~~~~~~~~~~~L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~~~~R~~-~I~i~~~~a~~~~~~w~~~  569 (1023)
T KOG0165|consen  491 ICLLAWLRARLQEKRFIQKYHSIKKLEHEVQSCLSQRNRAQSVIQKAVRHFLLRKKQRKF-TIGIIKIQALWRGYSWRKK  569 (1023)
T ss_pred             HHHHHHHHHHHhcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhhhhh
Confidence            55556665555554444                      256777766533332323332 1110000 00000001111


Q ss_pred             cchhHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 001148          674 HSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLK  753 (1139)
Q Consensus       674 ~~~e~~aRaA~~IQawwR~~~aRk~~~~~~~Aa~~IQ~~~r~k~~~~iqR~~r~l~~~~~AAi~IQs~~Rg~laRr~y~~  753 (1139)
                      ...++..+-...||+||+.+...++......-+.+.|......|.+.-++.+  +..-..++..||...+|-.+++.+..
T Consensus       570 ~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~--l~~~~~~~~~~~~n~~~~~a~sie~~  647 (1023)
T KOG0165|consen  570 NDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKH--LEVVTRLSPLCCENMAQSGAISIEKI  647 (1023)
T ss_pred             hcccccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHH--hhHHHHhhHHHhhhhhhhchhhHHHH
Confidence            1233455667789999999877665333333455566666667888888887  46678899999999999999997665


Q ss_pred             HHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh------hHHHHHHHHHHHHHHHHHhhhhhh
Q 001148          754 MRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDV------GIKAALKIQSSWRNFIASRSLQKN  827 (1139)
Q Consensus       754 ~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~------~~~AAi~IQ~~~Rg~laRr~y~r~  827 (1139)
                      -..+                 -..+|+.++.|..+...+..-.-. .++.      ...-.+.|-....-...+..+.+.
T Consensus       648 ~~~~-----------------~~~Lr~~~~~~~i~~~Iqv~~~~~-~~E~t~~~~~~~~n~~~v~~~~~~i~~~~~~~k~  709 (1023)
T KOG0165|consen  648 FVLI-----------------RSCLRSIPCMEVIRYAIQVLLNVS-KYEKTTSAVYDVENCIDILLELLQIYREKPGNKV  709 (1023)
T ss_pred             HHHH-----------------HhhhccchHHHHHHHHHHHHHhcc-cceeechhhhhhhhHHHHHHHHHHHHhcCccchh
Confidence            5543                 477899999998887655432100 0111      111223333333334445556666


Q ss_pred             HHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHH
Q 001148          828 YFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARR  907 (1139)
Q Consensus       828 r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~laRr  907 (1139)
                      +....+||++.+....-                     +-....+|..||++||....-+.....-+.+|.+.++|..+.
T Consensus       710 ~dk~~Vi~~A~~~~~~~---------------------l~~~L~~as~I~sAs~S~~~~~~~~~~~~~~~~~~~d~~~~~  768 (1023)
T KOG0165|consen  710 ADKGGVIFTATCCLLAI---------------------LLKTLNRASDIRSASKSVDRIYSLYKLTAHKHKMNTDERILY  768 (1023)
T ss_pred             hccCccccchhhhcCcc---------------------chhhHHHhhcchhhhhHHHHHHHHHhhhhhcccccccceEEE
Confidence            66777777766544331                     223456788899999986655556677889999999998776


Q ss_pred             HHhhccc-----------hhHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001148          908 RAYKEKH-----------HIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGI  976 (1139)
Q Consensus       908 ~~~~~~~-----------Aai~IQa~wRg~~aRK~~~~kl~~lR~Rlq~~~~~v~ee~kl~~Rl~~AL~~Ll~~k~ls~I  976 (1139)
                      ..+....           .--++|++|+||..|+...+++-..+.+++-....+..-+ +.+....++-.+|.++...++
T Consensus       769 ~~~~~s~~si~~~~e~S~~~~i~~~l~~~~~~r~~~~e~v~~~~~~~qT~~~~~~~~~-frmteeqerlEmLfqslsedq  847 (1023)
T KOG0165|consen  769 KQKKNSSISIPFIPETSVRTRIVSRLKPDWVLRRDNMEEITNPLQAIQTVMDTLGIPY-FRMTEEQERLEMLFQSLSEDQ  847 (1023)
T ss_pred             eeccCCcceeeccccCccchhhhhhcCcchhhccCcHhhcCCchhhcccccccCCcHH-HHHHHHHHHHHHHHHhhhHHH
Confidence            5433222           2346899999999999999999999999999988887655 888888899999999999999


Q ss_pred             HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148          977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus       977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
                      ++-|++++..|.++..||+-.+..|++...++.|++--+++|+..|-.++...+-.+++|+...++.+..-.+++++|+|
T Consensus       848 knfvkTnnlsvsieDdantpelrrielkrkqqeIarklgnIernalavrdggedssdsRsdaghDvaIlhgddsQlqldq  927 (1023)
T KOG0165|consen  848 KNFVKTNNLSVSIEDDANTPELRRIELKRKQQEIARKLGNIERNALAVRDGGEDSSDSRSDAGHDVAILHGDDSQLQLDQ  927 (1023)
T ss_pred             HHHHhhcccceeeccccCCHHHHHHHHHHHHHHHHHHhCCCchhhhhhhcCCcccccccCcccccchhhcCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh-------------hccCccchHHHHHHHhhCCCchhhHHhhChHHHHHHHHHHHHHhhhhHHHHhhccchhhhhhHH
Q 001148         1057 LVR-------------NKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSAVRENLE 1123 (1139)
Q Consensus      1057 ll~-------------~k~~~~f~a~~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~rk~~~~kr~~~~~~~~~~~~ 1123 (1139)
                      ++|             +++..||++...|+..|+.+.+++.|++.|-..++|+-..+++.++.+||+||..+.-.++..+
T Consensus       928 ksqlqndetqilenkKkaavviqkmirgfiarrkfqmeisniRnrmiqynhilaqedEqigieemEdksVeaklkKcalh 1007 (1023)
T KOG0165|consen  928 KSQLQNDETQILENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQYNHILAQEDEQIGIEEMEDKSVEAKLKKCALH 1007 (1023)
T ss_pred             HHhcccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHhhhcchHHHhhHHHhh
Confidence            987             1345689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 001148         1124 RRLREAAEILKLIKH 1138 (1139)
Q Consensus      1124 ~rl~~~~~~~~~~~~ 1138 (1139)
                      ++++|+.++.|++|+
T Consensus      1008 gltndnlhvVhvaat 1022 (1023)
T KOG0165|consen 1008 GLTNDNLHVVHVAAT 1022 (1023)
T ss_pred             hhhhcceeEEEeeec
Confidence            999999999998774

>KOG0517 consensus Beta-spectrin [Cytoskeleton] Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton] Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton] Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0516 consensus Dystonin, GAS (Growth-arrest-specific protein), and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG2046 consensus Calponin [Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1139
3f7p_A296 Crystal Structure Of A Complex Between Integrin Bet 3e-06
1mb8_A243 Crystal Structure Of The Actin Binding Domain Of Pl 4e-06
1sh5_A245 Crystal Structure Of Actin-Binding Domain Of Mouse 6e-06
4b7l_A347 Crystal Structure Of Human Filamin B Actin Binding 4e-05
3fer_A262 Crystal Structure Of N-Terminal Actin-Binding Domai 7e-05
2wa5_A245 Crystal Structure Of Human Filamin B Actin Binding 9e-05
1qag_A226 Actin Binding Region Of The Dystrophin Homologue Ut 9e-05
2wa7_A245 Structure Of The M202v Mutant Of Human Filamin B Ac 9e-05
2wfn_A278 Filamin A Actin Binding Domain Length = 278 1e-04
3hoc_A272 Structure Of The Actin-Binding Domain Of Human Fila 1e-04
3hop_A272 Structure Of The Actin-Binding Domain Of Human Fila 1e-04
2wa6_A245 Structure Of The W148r Mutant Of Human Filamin B Ac 3e-04
1dxx_A246 N-Terminal Actin-Binding Domain Of Human Dystrophin 6e-04
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 37/201 (18%)
Query: 417 LLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHR---KNSVNCSIALQ 473
           L++    +++L+ DL+DG  L  ++++L  DS       +P +  R       N  IAL 
Sbjct: 86  LIKAQRHISDLYEDLRDGHNLISLLEVLSGDS-------LPREKGRMRFHKLQNVQIALD 138
Query: 474 YLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIR 533
           YLR   VKL +     I  DD+A+G+ +L L L+W + +H Q+              ++ 
Sbjct: 139 YLRHRQVKLVN-----IRNDDIADGNPKLTLGLIWTIILHFQI-----------SDIQVS 182
Query: 534 GTNMDNLNIFDSALLDLLLNWIQVICEKYD-FRINNF-SSLTDGKAIWCLLDFYFRKEPC 591
           G + D      +A   LLL W Q + E Y   R +NF SS  DG+    ++    R +P 
Sbjct: 183 GQSEDM-----TAKEKLLL-WSQRMVEGYQGLRCDNFTSSWRDGRLFNAII---HRHKPL 233
Query: 592 GSCTSKVLQMSDILEHNGACS 612
               +KV + +++   + A S
Sbjct: 234 LIDMNKVYRQTNLENLDQAFS 254
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243 Back     alignment and structure
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245 Back     alignment and structure
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain With 1st Filamin Repeat Length = 347 Back     alignment and structure
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From Human Filamin B (Tandem Ch-Domains). Northeast Structural Genomics Consortium Target Hr5571a. Length = 262 Back     alignment and structure
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain At 1.9 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226 Back     alignment and structure
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin Binding Domain At 1.85 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain Length = 278 Back     alignment and structure
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Mutant E254k Length = 272 Back     alignment and structure
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Length = 272 Back     alignment and structure
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin Binding Domain At 1.95 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1139
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 9e-17
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 3e-16
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-14
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-05
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 1e-13
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 2e-13
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 8e-10
3hoc_A272 Filamin-A; calponin homology domain, actin binding 8e-13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-12
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 3e-05
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 3e-04
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 3e-04
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 2e-12
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 2e-12
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 3e-12
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 7e-12
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 3e-11
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 4e-11
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 8e-10
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 3e-08
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-07
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 2e-07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-05
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 5e-05
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-05
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 7e-05
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 8e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 7e-05
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 4e-04
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-05
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-04
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 8e-04
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-04
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 5e-04
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 7e-04
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-04
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 4e-04
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 7e-04
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
 Score = 80.8 bits (199), Expect = 9e-17
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 417 LLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR 476
           ++  +    +LF  + DG+ L +++ L + D+     I     T      N ++AL    
Sbjct: 46  VIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSAS 105

Query: 477 QAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTN 536
             G  +       I  +D+  G   L+L LLW +        +   ++         G  
Sbjct: 106 AIGCHV-----VNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGET 160

Query: 537 MDNLNIFDSALLDLLLNWIQVICEKYD-FRINNFS-SLTDGKAIWCLLD 583
           ++ L     +  +LLL W     E     +INNFS  + D KA + LL+
Sbjct: 161 LEEL--MKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLN 207
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1139
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 100.0
3hoc_A272 Filamin-A; calponin homology domain, actin binding 100.0
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 100.0
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 100.0
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 100.0
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 100.0
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 100.0
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 99.97
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.97
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 99.96
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 99.96
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 99.95
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 99.94
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.86
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.85
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.77
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.75
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.73
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.72
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.71
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.69
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.68
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.67
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.67
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.88
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.85
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.8
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.63
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.62
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.61
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 98.1
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 97.88
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 97.64
1wyl_A116 NEDD9 interacting protein with calponin homology a 97.52
2d88_A121 Protein mical-3; all alpha, calponin homology doma 97.52
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 97.51
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 97.4
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 97.31
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 97.21
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 97.17
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 97.17
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 97.09
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 97.06
1ujo_A144 Transgelin; CH domain, actin binding, structural g 96.97
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 96.97
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 96.92
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 96.88
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.88
1bhd_A118 Utrophin; calponin homology, actin binding, struct 96.79
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 96.73
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 96.72
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.7
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 96.69
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 96.69
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 96.68
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.64
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 96.62
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 96.56
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 96.53
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 96.5
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.33
2qjz_A123 Microtubule-associated protein RP/EB family member 95.91
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.79
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 95.56
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 95.45
3hoc_A272 Filamin-A; calponin homology domain, actin binding 95.3
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.09
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.87
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.76
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.56
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 94.43
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 94.43
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 94.34
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.3
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.21
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 94.13
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 93.89
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 93.6
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 93.43
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 93.27
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 93.09
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 93.04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.0
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 92.62
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 92.23
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 91.35
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 91.2
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 90.45
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 89.49
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 89.4
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 88.96
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 88.87
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 88.8
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 88.67
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 87.5
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 87.08
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 86.82
3nmz_A458 APC variant protein; protein-protein complex, arma 86.24
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 86.23
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 86.08
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 85.99
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 85.34
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 85.24
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 84.8
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 84.24
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 83.02
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 83.01
3nmz_A458 APC variant protein; protein-protein complex, arma 82.77
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 81.79
2qjz_A123 Microtubule-associated protein RP/EB family member 81.61
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 81.57
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
Probab=100.00  E-value=8e-38  Score=357.46  Aligned_cols=217  Identities=21%  Similarity=0.269  Sum_probs=179.7

Q ss_pred             cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148          412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM  491 (1139)
Q Consensus       412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~  491 (1139)
                      |.+++|.+.+..|+||++||+||++|++|+|+|++++ +..++...+.+|+||++||+.||+|+++.|++++|     |+
T Consensus        25 WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~-l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~lv~-----i~   98 (347)
T 4b7l_A           25 WCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKR-MYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVS-----ID   98 (347)
T ss_dssp             HHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCC-CSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSS-----CC
T ss_pred             HHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCc-cChhhcCCcccHHHHHHHHHHHHHHHHHhccccCC-----CC
Confidence            4455667777899999999999999999999999984 44555667789999999999999999999999999     99


Q ss_pred             cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC-
Q 001148          492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS-  570 (1139)
Q Consensus       492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt-  570 (1139)
                      ++||||||+++||||||+||+||||..++.......             .....++++.||.|||..+  ++++|+||+ 
T Consensus        99 ~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~-------------~~~~~~~k~~LL~W~~~~~--~~~~v~nF~~  163 (347)
T 4b7l_A           99 SKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDD-------------DAKKQTPKQRLLGWIQNKI--PYLPITNFNQ  163 (347)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC--------------------CCCCHHHHHHHHHHHHC--TTSCCCCSSG
T ss_pred             cchhhcCCHhhHHHHHHHHHHHHhhhhhhcccccch-------------hhhhhhHHHHHHHHHHhhC--CCcccCCCCC
Confidence            999999999999999999999999987643321111             1235678999999999764  578999999 


Q ss_pred             CCCchhhHHHHHHhhccCCCCCCCccccc-cchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccC
Q 001148          571 SLTDGKAIWCLLDFYFRKEPCGSCTSKVL-QMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNC  646 (1139)
Q Consensus       571 S~~DGraf~aLI~~~~p~~~lg~~~P~ll-~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~  646 (1139)
                      ||+||+|||+|||+|         .|+++ +++.+.     +.+..-+..+||..|+       +++|++++|+   +..
T Consensus       164 sw~DG~af~aLi~~~---------~P~~~~d~~~l~-----~~~~~~n~~~Af~~Ae-------~~lGip~ll~peDi~~  222 (347)
T 4b7l_A          164 NWQDGKALGALVDSC---------APGLCPDWESWD-----PQKPVDNAREAMQQAD-------DWLGVPQVITPEEIIH  222 (347)
T ss_dssp             GGTTSHHHHHHHHHH---------STTSSTTGGGSC-----TTCHHHHHHHHHHHHH-------HHHCCCCSSCHHHHTC
T ss_pred             CccchHHHHHHHHHh---------CCccccchhhcC-----cCCHHHHHHHHHHHHH-------HhcCCCcccCHHHcCC
Confidence            999999999999999         77776 565442     2344458889999986       6799999998   555


Q ss_pred             CCCCCccCCCceecccccCCCCccc
Q 001148          647 QSPERRHSNPNCRIVDSEALPDQEE  671 (1139)
Q Consensus       647 ~~pd~r~~~mtyv~~~~~~~~~~~~  671 (1139)
                      ..||++++ |||++++|+++.+|..
T Consensus       223 ~~pDeksi-mtYvs~~~~~~~~~~~  246 (347)
T 4b7l_A          223 PDVDEHSV-MTYLSQFPKAKLKPGA  246 (347)
T ss_dssp             TTCCHHHH-HHHHTTGGGCCCCTTC
T ss_pred             CCCChhHH-HHHHHHHhhhccCccc
Confidence            78999998 8999999999987654
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1139
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-17
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-14
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-16
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 7e-13
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 3e-12
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 3e-12
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 2e-09
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-06
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 0.002
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 2e-06
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 7e-05
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 8e-05
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-04
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.001
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 0.003
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.3 bits (208), Expect = 2e-17
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 11/173 (6%)

Query: 417 LLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYL 475
            L  D     L+  ++DGV L +++ + +  +     I      +      N ++ L   
Sbjct: 23  FLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSA 82

Query: 476 RQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGT 535
           +  G  + +     I   D+A G   L+L L+  +     L  +  KK    ++ ++   
Sbjct: 83  KAVGCSVVN-----IGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKT--PQLVELLED 135

Query: 536 NMDNLNIFDSALLDLLLNWIQVICEK--YDFRINNFS-SLTDGKAIWCLLDFY 585
           + D   +       +LL W+    +K  Y   ++NFS  L D +A   LL+  
Sbjct: 136 SDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVL 188
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1139
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 99.97
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 99.96
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 99.96
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 99.95
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.79
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.75
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.73
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.5
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.41
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.35
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.7
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.36
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 97.6
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.2
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.18
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 97.08
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 97.07
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.04
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 96.97
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 96.95
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 96.76
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 96.63
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.41
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 90.63
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 90.41
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 90.34
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 90.31
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 90.09
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 89.95
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 88.6
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 86.79
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 86.5
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 86.01
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 85.94
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 84.18
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 81.81
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 80.11
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1e-31  Score=318.08  Aligned_cols=222  Identities=17%  Similarity=0.197  Sum_probs=169.1

Q ss_pred             ccccccchhHHHhhhHHHHHHHHHHhcCCCcccccc-ccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccC
Q 001148          419 EYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKI-VVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVAN  497 (1139)
Q Consensus       419 e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl-~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVd  497 (1139)
                      +.+..|+|||+||+||++||+|+|+|++++.....+ +.|+.+|+|+++||+.||+|+++.||+++|     |+++||||
T Consensus        25 pi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~~k~~gi~lvn-----I~~~dIvd   99 (500)
T d1pxya_          25 PLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVN-----IGTQDLAE   99 (500)
T ss_dssp             SCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTT-----CCHHHHHH
T ss_pred             CCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHHHHHcCCEEec-----cChhhhhc
Confidence            457789999999999999999999999985333333 346678999999999999999999999999     99999999


Q ss_pred             CCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHc--cCCceecCCC-CCCc
Q 001148          498 GDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICE--KYDFRINNFS-SLTD  574 (1139)
Q Consensus       498 G~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~--~ygv~V~NFt-S~~D  574 (1139)
                      ||+++||||+|+||++|++..+.- . ...++.++....+........+++++||.|||..+.  +++++|+||+ ||+|
T Consensus       100 Gn~~liLgLlW~ii~~~~i~~i~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~~LL~W~n~~l~~~~~~~~v~nf~~d~~d  177 (500)
T d1pxya_         100 GRPHLVLGLISQLIKIQLLADLNL-K-KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKD  177 (500)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSSSS-C-C-----------------CCSCHHHHHHHHHHHHHHHTTCCSCCCCSSTTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcc-c-cCcchhccccCCccchhhccCCHHHHHHHHHHHhccccCCCceeecCcCCchh
Confidence            999999999999999999987621 1 112333332222222234466789999999999884  4588999998 9999


Q ss_pred             hhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc-ccCCCCCCcc
Q 001148          575 GKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG-CNCQSPERRH  653 (1139)
Q Consensus       575 Graf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~-v~~~~pd~r~  653 (1139)
                      |++||+|||+|         .|+.++++.+..     .+...+...+|..+        +++|++++++ -|+..++.++
T Consensus       178 G~~~~~Ll~~~---------~P~~~~~~~~~~-----~~~~~~~~~a~~~a--------~~lgip~~l~peDI~~~~~k~  235 (500)
T d1pxya_         178 AQAYAFLLNVL---------APEHCDPATLDA-----KDPLERAELVLSHA--------ERMNCKRYLTAEEIVEGSSTL  235 (500)
T ss_dssp             SHHHHHHHHHH---------CGGGCCGGGGGC-----CSHHHHHHHHHHHH--------HHTTCCCCCCHHHHHTTCHHH
T ss_pred             HHHHHHHHHHH---------CCCccChhhcCc-----CCHHHHHHHHHHHH--------HHhCCCccCCHHHhcCCcHHH
Confidence            99999999999         788887765532     23334566677654        5799999998 3555666777


Q ss_pred             CCCceecccccCCCCcc
Q 001148          654 SNPNCRIVDSEALPDQE  670 (1139)
Q Consensus       654 ~~mtyv~~~~~~~~~~~  670 (1139)
                      . |+||+..++.++...
T Consensus       236 ~-l~~va~lf~~~p~~~  251 (500)
T d1pxya_         236 N-LAFVAQIFHERNGLN  251 (500)
T ss_dssp             H-HHHHHHHHHHCCCCC
T ss_pred             H-HHHHHHHHHhccccc
Confidence            6 899999999988633
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure