Citrus Sinensis ID: 001149

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------114

MKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR

ccccccccccccccccccccccccHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHcccccccccccEEEEEccccccEEccccccHHHHHHHHccHHHHHHHHcccccccEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHccccccccccHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEccccccccHHHHHHHHHccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccHHcccccccccccccHHHcccccccccccccHHHHHHHHHHccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEccccHHHccccccccccccccccccccccccccccccccccccccEccccccEcHHcccccccEEEEEccccEEEEcccccccccccccccEEEcccccEEEcccccHccccccccccccHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHcHcccccccccccccccHHHccccccccHccccHEEEcccccccccccHHHHHHHHccccHHHHcccccHHHHHHcHcccccccccccHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHccccEEEEEHHHHHHcccccEcccHHHHHHHHHHHcccccEEEEcccHHEcccHHHHHHHHHHHccccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHcccHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccccccccEEEccEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHcccccccccHHccccccccccHHHHHHHHccccccHccccccHHHHHHHHHccHHHHHHHcHHHHHHcccHHHcccHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEHcccHEcc

mkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnnnEVALQNLETGVLESSVKErslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvkdecstkledhsvspenindaatdnslhsqsLSEKFYCTACnnvaievhphpilnviVCKDCKCllekkmhvkdadcsecycvwcgrssdlvsckscktlfCTTCVKRniseaclsdevqascwqccccspsllKRLTSELGRamgsenlivsssesdsensdadnnlkiggkrkQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFssksklmnsvtldgdlsagaSIEVLGDAITGYIVNVVREkgeeavripssISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAfrnlsfgkhvkdrNMAREICHAlqdgpdilvcdeahmikNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDfvregflgssHEFRNrfqnpiengqhtnstsedVKIMNQRSHILYEQLKGFVQRmdmnvvkkdlppktVFVITVKLSPLQRRLYKRFLDLhgftndrvsNEKIRKSFFAGYQALAQIwnhpgilqltkdkgypsredaedsssdenmdynvvigekprnmndflqgknddgffqKDWWNDLLhehtykeldysgKMVLLLDILTMCsnmgdkslvfsqsiptlDLIEFYlsklprpgkqgklwkkgkdwyrldgrtesSERQKLVERFNEPLNKRVKCTLIStragslginlhsanrviivdgswnptydLQAIYRAWrygqtkpvFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHlfefgddenpdpltavskengqgssqntncalkhklplshegcsdKLMESllgkhhprwisnyHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVdesiserkpasmsnltppapetssvtqprgilrSHVVIRKctnlshkltlrsqgtkpgcstvcgecaqeiswenckvar

mkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnNNEVALQNLETGVLESSVKERslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvKDECSTKledhsvspeninDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMhvkdadcsecYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIvsssesdsensdadnnlkiggkrkqkkkirrilddaelgeetkrkiAIEKERQERLKSlqvqfssksklMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGeeavripssisaklkaHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFmkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDFVREGFLGSSHEFRNRFQNpiengqhtnstseDVKIMNQRSHILYEQLKGFVQRMDMNVVkkdlppktvfvitvklsplqRRLYKRFLDLhgftndrvsnEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdenmDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLsklprpgkqgklwkkgkdwyrldgrtesserqklverfneplnkrvkCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFrksleweevqrvtvdesiserkpasmsnltppapetssvtqprgilRSHVVIRKCTnlshkltlrsqgtkpgcsTVCGecaqeiswenckvar

MKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGIssvsdsalpdssELRGIkrsneseepnsekkrsrTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGsenlivsssesdsensdadnnLkiggkrkqkkkirriLDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdeNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHehetllqeneeerlSKEEQDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR

***************************************************************************************************************************************************EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLT**************************************************************************************TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF***********************MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT***********************VVIG******NDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD*************RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEF**********************************************LLGKHHPRWISNYH*********************AWEVFRKSLEWEEVQ*********************************GILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENC****

****GS*********************************************************************************************************************************************EKFYCTACNNVAIEVHPHPILNVIVCKDCKC******************VWCGRSSDLVSCKSCKTLFCTTCV**************************************************************************************************************************************************EKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD*RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI******************RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL*****************FAGYQALAQIWNHPGILQLTKDKG********************VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA*****************MLHLFEFGDDENPD***********************************LMESLLGKHHPRWISNYHEHETLLQENEEE*****************************************************************************************VCGECAQEISWENCKV**

MKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL**************************LRGIKR**************RTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLI*************DNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK**************ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS*********NTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRV******************************RGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR

**EIGSVDWTIED******************************************************************************************************************************SLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGS****************************QKKKIRRILDD*****ETKRKIAIE**R**RLKS*******KSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT********IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSS**ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGD***************QGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQENEEERLSKEEQDMAWEVFRKSLE*********************************************VIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKV**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNxxxxxxxxxxxxxxxxxxxxxDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCKVAR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1138	2.2.26 [Sep-21-2011]
A4IHD2		1396	Helicase ARIP4 OS=Xenopus	yes	no	0.613	0.5	0.349	1e-127
Q9Y4B4		1467	Helicase ARIP4 OS=Homo sa	yes	no	0.556	0.431	0.378	1e-125
Q99NG0		1466	Helicase ARIP4 OS=Mus mus	yes	no	0.550	0.427	0.377	1e-124
Q9GQN5		1311	Transcriptional regulator	yes	no	0.636	0.552	0.334	1e-123
P46100		2492	Transcriptional regulator	no	no	0.324	0.148	0.441	5e-86
Q7YQM4		2492	Transcriptional regulator	no	no	0.313	0.143	0.442	5e-86
Q7YQM3		2492	Transcriptional regulator	N/A	no	0.324	0.148	0.441	6e-86
Q61687		2476	Transcriptional regulator	no	no	0.313	0.144	0.445	1e-85
B4MX21		784	DNA repair and recombinat	N/A	no	0.434	0.631	0.310	1e-69
Q9DG67		918	DNA repair and recombinat	no	no	0.454	0.563	0.326	2e-69

>sp\|A4IHD2\|ARIP4_XENTR Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1	Back alignment and function desciption

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 293/838 (34%), Positives = 442/838 (52%), Gaps = 140/838 (16%)

Query: 326  VQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITG------YIVNVVREKGEEAVRIPSSI 379
            +Q S  +   N V  DGD++   S   + DA+         +VN+     E+ + +   +
Sbjct: 208  LQISDNADSTNEV--DGDITTENSGSHVNDALNQADHLGRVLVNINHPPNEKDIFLAPQL 265

Query: 380  SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439
            +  +K+HQ+ GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QVI+FL    +  
Sbjct: 266  ARAVKSHQIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQVISFLDVLFQHT 324

Query: 440  NLGLRTALIVTPVNVLHNWKQEFMKWRPS----------ELKPLRVFMLEDVSRDR---- 485
            +   +T L + PVN L NW  EF  W P           EL   R F +  ++ +     
Sbjct: 325  SA--KTVLAIVPVNTLQNWLAEFNMWLPPPESLPKDHNQELVQPRAFKVHTMNDEHKTTA 382

Query: 486  -RAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----------------------KDRNM 521
             RA+++  W   GGV L+GY  +R LS  K                         + + M
Sbjct: 383  ARAKVVNDWATDGGVLLMGYEMYRLLSLKKSFTAGRKKKSKKAAGPVIIDLDEEDRQQEM 442

Query: 522  AREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 580
             + I  AL + GPD+++CDE H IKN  A T+QALK ++ +RR+ LTG PLQNNL+EY+C
Sbjct: 443  LKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWC 502

Query: 581  MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 640
            MVDFVR  FLG+  EF N F+ PI NGQ  +ST +D ++M  RSH+L+  L+GFVQR   
Sbjct: 503  MVDFVRPDFLGTRQEFSNMFERPILNGQCVDSTPQDKRLMRYRSHVLHSLLEGFVQRRGH 562

Query: 641  NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL--- 697
             V+K  LP K   VI V+LS +QR LY  F++            + R +  +G+  L   
Sbjct: 563  TVLKAQLPFKEEHVILVRLSKIQRDLYTEFMN------------RFRDAGNSGWLGLNPL 610

Query: 698  ------AQIWNHPGILQLTKDKGYPSRE---DAEDSSSD------------ENMDYNVVI 736
                   +IWNHP +L     K   + E   D ED  ++            E      ++
Sbjct: 611  KAFCVCCKIWNHPDVLYEALQKENLANEQDLDVEDLGTNNRCNAQSGKIKVEPNSLGALM 670

Query: 737  GEKPRNMNDFLQG-------KNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC 789
            GE        LQG       +  +     +W  ++L ++   +L  S KMVLL  ++   
Sbjct: 671  GETAHTKQ--LQGIVLNPSHEKANQVVTYEWAKEILSDYIPGQLQNSPKMVLLFHLIEES 728

Query: 790  SNMGDKSLVFSQSIPTLDLIEFYLS--KLPRP----GKQGKLWKKGKDWYRLDGRTESSE 843
              MGDK LVFSQS+ TL ++E +L+  K+P P    G++G  W +  ++YRLDG T +SE
Sbjct: 729  MRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASE 788

Query: 844  RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 903
            R++L+ +FN+P N++V   L+STRAG LG+NL  ANRV++ D SWNP +D QA+ R +RY
Sbjct: 789  RERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRY 848

Query: 904  GQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDE 963
            GQ KP + YRL++  T+E+KIY RQ+TK+G++ RVVD        ++ E+ +L  F ++E
Sbjct: 849  GQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEE 908

Query: 964  NPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK---HHPRWISN-YH 1019
             PD            S Q+ + +  H              E++L K    +P  I+    
Sbjct: 909  -PD-----------ASRQHLDSSSFH--------------EAVLQKACLQYPHLITKEPF 942

Query: 1020 EHETLLQENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVD---ESISERKPASMSNL 1074
            +HE+LL + +E++L+  E+  A         +EE +R +V     S ++  PA   NL
Sbjct: 943  QHESLLLDRKEQKLTLAEKKAA------KRGYEEEKRASVPYTRPSYTQYYPAPDHNL 994

DNA helicase that modulates androgen receptor (AR)-dependent transactivation in a promoter-dependent manner.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q9Y4B4\|ARIP4_HUMAN Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4	Back alignment and function description

>sp\|Q99NG0\|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1	Back alignment and function description

>sp\|Q9GQN5\|ATRX_DROME Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2	Back alignment and function description

>sp\|P46100\|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5	Back alignment and function description

>sp\|Q7YQM4\|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|Q7YQM3\|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|Q61687\|ATRX_MOUSE Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3	Back alignment and function description

>sp\|B4MX21\|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1	Back alignment and function description

>sp\|Q9DG67\|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1138
255561985		1447	conserved hypothetical protein [Ricinus	0.922	0.725	0.782	0.0
302143565		1477	unnamed protein product [Vitis vinifera]	0.976	0.752	0.758	0.0
359488066		1507	PREDICTED: uncharacterized protein LOC10	0.976	0.737	0.757	0.0
449470320		1628	PREDICTED: uncharacterized protein LOC10	0.970	0.678	0.726	0.0
224125738		1404	chromatin remodeling complex subunit [Po	0.932	0.755	0.730	0.0
356574892		1485	PREDICTED: transcriptional regulator ATR	0.927	0.710	0.734	0.0
297843648		1483	ATRX/CHR20 [Arabidopsis lyrata subsp. ly	0.871	0.668	0.695	0.0
334182391		1479	DEAD-like helicase domain-containing pro	0.862	0.663	0.692	0.0
9802554		1471	F22O13.8 [Arabidopsis thaliana]	0.855	0.662	0.686	0.0
334182389		1458	DEAD-like helicase domain-containing pro	0.844	0.659	0.674	0.0

>gi\|255561985\|ref\|XP_002522001.1\| conserved hypothetical protein [Ricinus communis] gi\|223538805\|gb\|EEF40405.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1705 bits (4415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 844/1079 (78%), Positives = 942/1079 (87%), Gaps = 29/1079 (2%)

Query: 81   ELRGIKRSNESEEPNSEKKRSRTIIIGSD-EADVVKDECST--KLEDHSVSPENINDAAT 137
            E R  KR NES EP ++ K+ RT+II SD EAD + +  S+  ++   S   ENI ++  
Sbjct: 363  ESRKSKRPNESGEPTNDAKKIRTVIIDSDDEADGINESVSSANRVVVESTLQENIGESGA 422

Query: 138  DNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCV 197
            D  L SQ ++E+F+CT C+ +  EVH HP+L VI+CKDCKC +EKKMHVKD +CSECYC 
Sbjct: 423  DGHL-SQCVNEEFHCTVCHKICFEVHSHPLLKVIICKDCKCSIEKKMHVKDPECSECYCA 481

Query: 198  WCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGR 257
            WCGRS+DLVSCKSCKTLFCTTCVKRNI E CLS E Q+S WQCCCCSP+ L+RLT EL +
Sbjct: 482  WCGRSNDLVSCKSCKTLFCTTCVKRNIGEECLS-EAQSSGWQCCCCSPNQLQRLTLELEK 540

Query: 258  AMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKER 317
            AMGSE+L+ +SS+S+SENSDAD ++ I  K K+KKKIRRILDDAELGEET+RKIAIEKER
Sbjct: 541  AMGSEDLMDTSSDSESENSDADIHVAIRKKNKKKKKIRRILDDAELGEETQRKIAIEKER 600

Query: 318  QERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPS 377
            QERLKSL+VQF+ KSK+MN+ + +G+L  GAS EVLGDA TGYIVNVVREKGEEAVRIP 
Sbjct: 601  QERLKSLKVQFTDKSKMMNTASCNGNLPEGASFEVLGDAATGYIVNVVREKGEEAVRIPP 660

Query: 378  SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 437
            SISAKLKAHQV GIRFMWENI+QSI KVKSGD+GLGCILAHTMGLGKTFQVIAFLYTAMR
Sbjct: 661  SISAKLKAHQVAGIRFMWENIVQSIGKVKSGDRGLGCILAHTMGLGKTFQVIAFLYTAMR 720

Query: 438  SVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKG 497
            S++LGLRTALIVTPVNVLHNW+QEFMKWRPSE KPLRVFMLEDVSRDRRAELLAKWRAKG
Sbjct: 721  SIDLGLRTALIVTPVNVLHNWRQEFMKWRPSETKPLRVFMLEDVSRDRRAELLAKWRAKG 780

Query: 498  GVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQ 557
            GVFLIGYTAFRNLS GK+VKDRNMAREIC+ALQDGPDILVCDEAH+IKNTRADTTQALKQ
Sbjct: 781  GVFLIGYTAFRNLSLGKNVKDRNMAREICYALQDGPDILVCDEAHIIKNTRADTTQALKQ 840

Query: 558  VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617
            VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST+ DV
Sbjct: 841  VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTANDV 900

Query: 618  KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT 677
            KIMNQRSHILYEQLKGFVQRMDM+VVKKDLPPKTVFVI VKLSPLQR+LYK+FLD+HGFT
Sbjct: 901  KIMNQRSHILYEQLKGFVQRMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKKFLDVHGFT 960

Query: 678  NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRED------AEDSSSDENMD 731
             D VS+EKIRKSFFAGYQALAQIWNHPGILQL KD+ Y +RE+      A++SSSDEN+D
Sbjct: 961  KDIVSSEKIRKSFFAGYQALAQIWNHPGILQLRKDRDYVTREETVDNFIADESSSDENLD 1020

Query: 732  YNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSN 791
             N +IGEKPRN NDF+Q K+D+GFFQK WWNDLL E+ YKELDYSGKMVLLLDILT  S+
Sbjct: 1021 CNTIIGEKPRNANDFVQRKSDNGFFQKGWWNDLLQENNYKELDYSGKMVLLLDILTASSH 1080

Query: 792  MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 851
            +GDK+LVFSQSIPTLDLIE YLS+L R GK+GKLW+KGKDWYRLDGRTESSERQ+LVE+F
Sbjct: 1081 VGDKALVFSQSIPTLDLIELYLSRLSRHGKKGKLWRKGKDWYRLDGRTESSERQRLVEKF 1140

Query: 852  NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911
            N+P NKRVKCTLISTRAGSLGINLH+ANRV+IVDGSWNPTYDLQAI+RAWRYGQTKPVFA
Sbjct: 1141 NDPENKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIFRAWRYGQTKPVFA 1200

Query: 912  YRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAV 971
            YRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTIS+EEMLHLF+FGD+EN DPL  V
Sbjct: 1201 YRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISREEMLHLFDFGDEENSDPLAEV 1260

Query: 972  SKENGQGSSQN----TNCALKHKLPLSHEGC-SDKLMESLLGKHHPRWISNYHEHETLLQ 1026
             +E+ Q   QN       +LKHK PLSH  C SDKLMESLLGKHHPRWI+NYHEHETLLQ
Sbjct: 1261 GEEDKQVDDQNMSYKVGSSLKHKAPLSHVSCSSDKLMESLLGKHHPRWIANYHEHETLLQ 1320

Query: 1027 ENEEERLSKEEQDMAWEVFRKSLEWEEVQRVTVDESISERKPASMSNLTPPAPETSSVTQ 1086
            ENEEE+L+KEEQDMAWEV+R+SLEWEEVQRV++DES  ERKP  +SN  P AP T+S   
Sbjct: 1321 ENEEEKLTKEEQDMAWEVYRRSLEWEEVQRVSLDESTFERKPP-ISNAVPSAPNTNSKGP 1379

Query: 1087 P------------RGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWEN 1133
            P            +GILR  +V RKCTNLSH LTLRSQGTK GC+TVCGECAQEISWE+
Sbjct: 1380 PVRETSSSNVAPSKGILRCRMVQRKCTNLSHLLTLRSQGTKVGCTTVCGECAQEISWED 1438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302143565\|emb\|CBI22318.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488066\|ref\|XP_002263799.2\| PREDICTED: uncharacterized protein LOC100244360 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449470320\|ref\|XP_004152865.1\| PREDICTED: uncharacterized protein LOC101218346 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224125738\|ref\|XP_002319663.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222858039\|gb\|EEE95586.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356574892\|ref\|XP_003555577.1\| PREDICTED: transcriptional regulator ATRX-like [Glycine max]	Back alignment and taxonomy information

>gi\|297843648\|ref\|XP_002889705.1\| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata] gi\|297335547\|gb\|EFH65964.1\| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|334182391|ref|NP_001184937.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182393|ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182395|ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9802554\|gb\|AAF99756.1\|AC003981_6 F22O13.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182389\|ref\|NP_172336.4\| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi\|332190192\|gb\|AEE28313.1\| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1138
UNIPROTKB\|K7GSF7		2372	LOC100514440 "Uncharacterized	0.358	0.172	0.413	2.4e-155
UNIPROTKB\|F1MQ85		2473	ATRX "Uncharacterized protein"	0.358	0.164	0.413	2.6e-154
UNIPROTKB\|F1PKC1		2489	ATRX "Uncharacterized protein"	0.358	0.163	0.413	1.5e-153
UNIPROTKB\|F1LM36		2467	F1LM36 "Uncharacterized protei	0.358	0.165	0.413	2.8e-153
MGI\|MGI:103067		2476	Atrx "alpha thalassemia/mental	0.358	0.164	0.413	1.3e-152
UNIPROTKB\|P46100		2492	ATRX "Transcriptional regulato	0.358	0.163	0.411	1.7e-152
UNIPROTKB\|E1C8H5		2434	ATRX "Uncharacterized protein"	0.358	0.167	0.415	1.7e-148
ZFIN\|ZDB-GENE-030912-11		2011	atrx "alpha thalassemia/mental	0.357	0.202	0.400	1.6e-145
UNIPROTKB\|F1RPI9		988	LOC100514440 "Uncharacterized	0.358	0.412	0.412	1.2e-138
ZFIN\|ZDB-GENE-030131-3097		1437	rad54l2 "RAD54-like 2 (S. cere	0.431	0.341	0.389	1.4e-114

UNIPROTKB\|K7GSF7 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 820 (293.7 bits), Expect = 2.4e-155, Sum P(6) = 2.4e-155
 Identities = 177/428 (41%), Positives = 257/428 (60%)

Query:   298 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 357
             L D +L  ET+  +   KE +ER K +  +   + KL   + ++        I       
Sbjct:  1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489

Query:   358 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 417
             T  +++   E  E  V++  ++  KLK HQV G++FMW+   +S++K K    G GCILA
Sbjct:  1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548

Query:   418 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 475
             H MGLGKT QV++FL+T +    L   TAL+V P+N   NW  EF KW+    + + L V
Sbjct:  1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608

Query:   476 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 533
               L  V R + R+ +L +W+  GGV +IGY  +RNL+ G++VK R +      AL D GP
Sbjct:  1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668

Query:   534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 593
             D +VCDE H++KN  +  ++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS 
Sbjct:  1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728

Query:   594 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 653
              EFRNRF NPI+NGQ  +ST  DV++M +R+HILYE L G VQR D   + K LPPK  +
Sbjct:  1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788

Query:   654 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 710
             V+ V+++P+Q +LY+ +LD L G  N       K     F  +Q L++IW HP  LQL  
Sbjct:  1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848

Query:   711 ---KDKGY 715
                ++KGY
Sbjct:  1849 ISKENKGY 1856

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB\|F1MQ85 ATRX "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKC1 ATRX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LM36 F1LM36 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:103067 Atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P46100 ATRX "Transcriptional regulator ATRX" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C8H5 ATRX "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030912-11 atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RPI9 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3097 rad54l2 "RAD54-like 2 (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1138
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-70
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	2e-67
cd11726		127	cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha	6e-45
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-29
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-24
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	2e-18
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	4e-17
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	8e-17
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-15
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-13
cd11672		120	cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD	3e-12
cd11725		126	cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-	4e-07
cd11729		137	cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine	4e-05

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  253 bits (647), Expect = 1e-70
 Identities = 190/712 (26%), Positives = 306/712 (42%), Gaps = 81/712 (11%)

Query: 246 SLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGG-KRKQKKKIRRILDDAELG 304
           S  KR  + L    G  +L+V     +  +S+    L        +  K       ++L 
Sbjct: 197 SDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLL 256

Query: 305 EETKRKI--AIEKERQERLKSLQVQFSSKSKLMNSVTLDGDL---SAGASIEVLGDAITG 359
           +     +    E+ ++E L + +++     +L +   +       +   S   L D +  
Sbjct: 257 DLKVLLLSATPEQLKEEDLFA-RLRLLDPLRLADLSQILEKFVRETLKLSARDLKDELKE 315

Query: 360 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 419
            +  +   +       P  +SA+L+ +Q+ G+ ++ E               LG ILA  
Sbjct: 316 LLAELRLSEDLLNAPEPVDLSAELRPYQLEGVNWLSE---------LLRSNLLGGILADD 366

Query: 420 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE 479
           MGLGKT Q IA L + + S+ + L  ALIV P ++L NWK+EF K+ P +L+ + V+  E
Sbjct: 367 MGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP-DLRLVLVYHGE 425

Query: 480 DVSRDRRAELLAKWRAKGG-----VFLIGY-TAFRNLSFGKHVKDRNMAREICHALQDGP 533
               D++ E L             V +  Y    R L     +K                
Sbjct: 426 KSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEW------------ 473

Query: 534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD-FVREGFLGS 592
           D +V DEAH IKN ++   +AL+ +K   R+ LTG+PL+N L E + ++  F+  G LG+
Sbjct: 474 DRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533

Query: 593 SH-EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMN--VVKKDLPP 649
           S   F   F+ PI+  +        ++       +L + L  F+ R       V K+LPP
Sbjct: 534 SFAIFTRLFEKPIQAEEDIGP----LEARELGIELLRKLLSPFILRRTKEDVEVLKELPP 589

Query: 650 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 708
           K   V+  +LS  QR LY+  L+        + + EK          +   I        
Sbjct: 590 KIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILAL----- 644

Query: 709 LTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 768
           LT+ +   +     D   +   D  V++  + ++ +   +        +    ++LL + 
Sbjct: 645 LTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDK 704

Query: 769 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 828
             +E  Y                   K L+FSQ  P LDL+E YL  L            
Sbjct: 705 LLEEGHY------------------HKVLIFSQFTPVLDLLEDYLKALGIKY-------- 738

Query: 829 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 888
                RLDG T +  RQ+L++RFN    +  K  L+S +AG LG+NL  A+ VI+ D  W
Sbjct: 739 ----VRLDGSTPAKRRQELIDRFNAD--EEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792

Query: 889 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 940
           NP  +LQAI RA R GQ +PV  YRL+  GT+EEKI + Q  K+ L   ++D
Sbjct: 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLID 844

Length = 866

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked)	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain	Back alignment and domain information

>gnl\|CDD\|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3)	Back alignment and domain information

>gnl\|CDD\|213037 cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 a (Dnmt3a)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1138
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.98
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.95
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.94
PHA02558		501	uvsW UvsW helicase; Provisional	99.94
KOG1123		776	consensus RNA polymerase II transcription initiati	99.92
KOG0354		746	consensus DEAD-box like helicase [General function	99.89
PTZ00110		545	helicase; Provisional	99.87
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.86
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.86
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.86
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.86
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.86
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.85
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.85
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.84
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.84
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.84
PTZ00424		401	helicase 45; Provisional	99.84
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.83
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.83
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.82
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.81
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.8
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.8
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.79
PRK13767		876	ATP-dependent helicase; Provisional	99.78
PRK10689		1147	transcription-repair coupling factor; Provisional	99.78
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.75
PRK02362		737	ski2-like helicase; Provisional	99.74
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.73
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.73
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.71
PRK01172		674	ski2-like helicase; Provisional	99.71
PRK00254		720	ski2-like helicase; Provisional	99.69
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.68
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.67
COG4096		875	HsdR Type I site-specific restriction-modification	99.67
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.65
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.64
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.63
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.63
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.6
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.59
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.59
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.58
COG1205		851	Distinct helicase family with a unique C-terminal	99.57
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.57
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.55
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.55
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.55
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.54
PRK05580		679	primosome assembly protein PriA; Validated	99.53
PHA02653		675	RNA helicase NPH-II; Provisional	99.53
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.52
COG4889		1518	Predicted helicase [General function prediction on	99.51
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.51
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.5
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.49
PRK09401		1176	reverse gyrase; Reviewed	99.49
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.47
COG1204		766	Superfamily II helicase [General function predicti	99.46
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.45
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.45
KOG4284		980	consensus DEAD box protein [Transcription]	99.42
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.41
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.41
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.4
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.39
PRK09694		878	helicase Cas3; Provisional	99.39
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.39
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.39
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.38
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.37
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.37
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.36
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.33
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.33
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.32
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.32
COG1202		830	Superfamily II helicase, archaea-specific [General	99.31
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.3
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.29
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.26
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.26
PRK14701		1638	reverse gyrase; Provisional	99.25
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.24
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.2
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.17
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.16
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.16
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.14
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.13
PRK05298		652	excinuclease ABC subunit B; Provisional	99.13
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.1
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.06
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.05
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.04
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.04
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.03
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.98
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.96
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	98.94
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.93
KOG0346		569	consensus RNA helicase [RNA processing and modific	98.93
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.92
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	98.88
KOG0327		397	consensus Translation initiation factor 4F, helica	98.83
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	98.81
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.75
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	98.72
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.57
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	98.54
COG0610		962	Type I site-specific restriction-modification syst	98.52
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.49
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.46
KOG0353		695	consensus ATP-dependent DNA helicase [General func	98.45
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.39
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.25
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.23
PRK15483		986	type III restriction-modification system StyLTI en	98.22
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.22
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.11
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.08
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.05
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.03
KOG4299		613	consensus PHD Zn-finger protein [General function	97.97
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	97.97
PF13871		278	Helicase_C_4: Helicase_C-like	97.92
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	97.91
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	97.9
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	97.88
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	97.85
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.84
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	97.82
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.79
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	97.76
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	97.67
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	97.66
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.65
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	97.59
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.51
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	97.47
KOG1244		336	consensus Predicted transcription factor Requiem/N	97.39
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.28
PRK10536		262	hypothetical protein; Provisional	97.26
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.24
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.24
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.21
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.21
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.18
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.17
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.07
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	96.88
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	96.82
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	96.82
KOG1803		649	consensus DNA helicase [Replication, recombination	96.35
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.34
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.15
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.07
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	95.99
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.96
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	95.95
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	95.71
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	95.68
PRK14873		665	primosome assembly protein PriA; Provisional	95.58
KOG0825		1134	consensus PHD Zn-finger protein [General function	95.44
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.32
KOG1512		381	consensus PHD Zn-finger protein [General function	95.18
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.11
KOG1131		755	consensus RNA polymerase II transcription initiati	94.86
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	94.84
KOG1973		274	consensus Chromatin remodeling protein, contains P	94.75
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	94.69
PRK04296		190	thymidine kinase; Provisional	94.63
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	94.46
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	94.44
PRK10875		615	recD exonuclease V subunit alpha; Provisional	94.44
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	93.84
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	93.67
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	93.2
smart00382		148	AAA ATPases associated with a variety of cellular	92.71
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	92.66
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	92.65
KOG0957		707	consensus PHD finger protein [General function pre	92.63
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	92.59
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	92.44
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	92.36
PRK08116		268	hypothetical protein; Validated	91.67
PRK06526		254	transposase; Provisional	91.63
KOG1805		1100	consensus DNA replication helicase [Replication, r	91.19
CHL00181		287	cbbX CbbX; Provisional	90.78
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	90.57
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	90.34
KOG4299		613	consensus PHD Zn-finger protein [General function	90.3
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	90.21
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	90.19
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	90.12
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	89.4
PF13245		76	AAA_19: Part of AAA domain	89.26
PRK07952		244	DNA replication protein DnaC; Validated	89.18
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	88.96
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	88.92
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	87.81
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	87.35
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	86.79
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	86.79
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	86.74
PHA02533		534	17 large terminase protein; Provisional	86.51
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	86.5
PRK14087		450	dnaA chromosomal replication initiation protein; P	86.3
PTZ00112		1164	origin recognition complex 1 protein; Provisional	86.25
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	86.17
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	86.15
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	86.14
PRK08769		319	DNA polymerase III subunit delta'; Validated	86.06
PRK05707		328	DNA polymerase III subunit delta'; Validated	85.99
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	85.67
PRK08727		233	hypothetical protein; Validated	85.61
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	85.6
PRK08084		235	DNA replication initiation factor; Provisional	85.45
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	85.41
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	85.14
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	84.94
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	84.89
PRK12402		337	replication factor C small subunit 2; Reviewed	84.86
KOG0954		893	consensus PHD finger protein [General function pre	84.8
PRK00149		450	dnaA chromosomal replication initiation protein; R	84.53
PRK09112		351	DNA polymerase III subunit delta'; Validated	84.47
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	84.23
PRK14974		336	cell division protein FtsY; Provisional	84.18
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	83.97
PRK08181		269	transposase; Validated	83.87
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	83.61
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	83.61
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	83.52
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	83.05
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	83.01
PRK06835		329	DNA replication protein DnaC; Validated	82.94
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	82.93
KOG1081		463	consensus Transcription factor NSD1 and related SE	82.78
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	82.37
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	82.29
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	82.19
PRK12377		248	putative replication protein; Provisional	82.17
PF05970		364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	82.13
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	82.05
KOG2807		378	consensus RNA polymerase II transcription initiati	81.93
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	81.74
PRK14088		440	dnaA chromosomal replication initiation protein; P	81.69
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	81.63
PLN03025		319	replication factor C subunit; Provisional	81.47
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	81.42
PRK06921		266	hypothetical protein; Provisional	81.28
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	80.36
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	80.3

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

Probab=100.00  E-value=6.8e-164  Score=1415.41  Aligned_cols=939  Identities=38%  Similarity=0.574  Sum_probs=792.0

Q ss_pred             CCceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccccccCCCc
Q 001149          147 SEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISE  226 (1138)
Q Consensus       147 ~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~  226 (1138)
                      -..+.|+.|.+.....+.||..++..|+.|.....+ ....+++..+..|.||+.--.+.-|..|++.||..|+.++.+.
T Consensus       447 k~~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~~-~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e~~~esd~  525 (1567)
T KOG1015|consen  447 KPRYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRRK-VSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKEAELESDQ  525 (1567)
T ss_pred             Ccchhhhhhcchhhcccccchhhhcchhhhccchhh-hcccccccchhhcccccCccccchhhhcccccchHHHhhccch
Confidence            455789999999999999999999999998877653 3455566667799999999999999999999999999999999


Q ss_pred             ccccccccCCCceeecCCcchHhHHHHHHHhhhccccccccCCCCCCCCccccCCcccccchhhhHhHHhhhccccccHH
Q 001149          227 ACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEE  306 (1138)
Q Consensus       227 ~~~~~~~~~~~W~C~~C~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~d~sd~~~~~~~~~~~~~~k~ir~~l~d~~l~e~  306 (1138)
                      ..++ ....-.|.|.+|++.+.+  .++.++.+........++++.++.+.+..|++..+|.|+||+||+|++|++|..+
T Consensus       526 Evmp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~ke  602 (1567)
T KOG1015|consen  526 EVMP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKE  602 (1567)
T ss_pred             hhhh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchh
Confidence            9888 445566999999999988  6777888777666555555555443334677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHhhhhhhhcccccccCCCCCCCchhhhhcccccccchhhccccCCccccCCchhhhhc
Q 001149          307 TKRKIAIEKERQERLKSL---QVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKL  383 (1138)
Q Consensus       307 t~~~~~~e~~r~~rl~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~vp~~l~~~L  383 (1138)
                      |+.|+++|++|++||+..   ++.++.+.     +.....+++        ....++++++..+..+++++||.+|...|
T Consensus       603 T~~a~k~EkeRrkRie~~~~rqK~~n~i~-----ied~s~~~e--------~it~~lVld~deet~e~~VqV~rslv~kL  669 (1567)
T KOG1015|consen  603 TQNALKEEKERRKRIEEERERQKLRNVIE-----IEDASPTKE--------PITTKLVLDEDEETKEPLVQVHRSLVIKL  669 (1567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhceee-----eccCCCCcc--------ccceeEEecchhhhccchhhccHhHHhhc
Confidence            999999999999999983   33333221     111122222        12237889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149          384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM  463 (1138)
Q Consensus       384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~  463 (1138)
                      +|||..||+|||+++++++.|. ..++|.||||||+||||||+|+|+|+++++.....+.+++|||||.+++.||.+||.
T Consensus       670 KpHQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFe  748 (1567)
T KOG1015|consen  670 KPHQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFE  748 (1567)
T ss_pred             CcccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHH
Confidence            9999999999999999999997 458999999999999999999999999999999899999999999999999999999


Q ss_pred             HHCCC--CCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhh-ccCCCEEEEc
Q 001149          464 KWRPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL-QDGPDILVCD  539 (1138)
Q Consensus       464 kw~p~--~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l-~~~~dlVIlD  539 (1138)
                      +|.++  ...++.|+.+...++ ..|...+..|+..+||+|++|++||+|+.++.+++++....+...+ .++||+||||
T Consensus       749 kWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCD  828 (1567)
T KOG1015|consen  749 KWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCD  828 (1567)
T ss_pred             HhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEec
Confidence            99985  234689999888776 7889999999999999999999999999999998888666555544 4599999999


Q ss_pred             CCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHH
Q 001149          540 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKI  619 (1138)
Q Consensus       540 EaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~  619 (1138)
                      |||.|||..|.+++|+.+++++|||+|||||+||||+|||||++|++|++||+..+|+++|.+||.+|++.+++..++.+
T Consensus       829 E~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~  908 (1567)
T KOG1015|consen  829 EGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRV  908 (1567)
T ss_pred             chhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc--cchHHHHhhHHHHHHHH
Q 001149          620 MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR--VSNEKIRKSFFAGYQAL  697 (1138)
Q Consensus       620 ~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~--~~~~~~~~~~l~~l~~L  697 (1138)
                      |++|+|+|+.+|++||+|+++.++..+||||++|||.|.||+.|+.||.+|++ +.+....  ....+.+.++|+.|+.|
T Consensus       909 Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arlf~dfqml  987 (1567)
T KOG1015|consen  909 MKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARLFQDFQML  987 (1567)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 3333222  12223667899999999


Q ss_pred             HHHhcCcccccccccc----CCCCCcc---c--cCCC----------------------CccccccccccC------CCC
Q 001149          698 AQIWNHPGILQLTKDK----GYPSRED---A--EDSS----------------------SDENMDYNVVIG------EKP  740 (1138)
Q Consensus       698 rki~~hP~ll~~~~~~----~~~~~e~---~--~d~~----------------------~d~~~d~~~~~~------~~~  740 (1138)
                      ++||+||+.+++....    .+.+..+   .  ++++                      .|+..+.....+      .+.
T Consensus       988 srIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~ 1067 (1567)
T KOG1015|consen  988 SRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKN 1067 (1567)
T ss_pred             HHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhh
Confidence            9999999999865431    1111111   1  1110                      022222222222      111


Q ss_pred             ccchhhhcC------------------C----CCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEE
Q 001149          741 RNMNDFLQG------------------K----NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV  798 (1138)
Q Consensus       741 ~~~~d~~~~------------------~----~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLV  798 (1138)
                      +...++..+                  .    ....-.+..||.+++....+..+..|+||.+|++||..+.+.|+|+||
T Consensus      1068 rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLV 1147 (1567)
T KOG1015|consen 1068 RKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLV 1147 (1567)
T ss_pred             hhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEE
Confidence            112111111                  0    011123457999999999999999999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHhhCCCCCC-----------CcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecc
Q 001149          799 FSQSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTR  867 (1138)
Q Consensus       799 FSq~~~~ld~Le~~L~~l~~~~~-----------~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTk  867 (1138)
                      |||++.+|++|+.||..+.+.++           .|. |..|.+|+||||+++..+|+++.++||++.|-++++|||||+
T Consensus      1148 FSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGk-W~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTR 1226 (1567)
T KOG1015|consen 1148 FSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGK-WLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTR 1226 (1567)
T ss_pred             eecccchhHHHHHHHHhhcccCccccccccccccccc-eecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeec
Confidence            99999999999999998876654           344 999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccccccc
Q 001149          868 AGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT  947 (1138)
Q Consensus       868 aGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~~r~  947 (1138)
                      ||++||||.+||||||||.+|||+++.|+|+||||+||+||||||||++.||||++||.||++|+.++.+|||++|+.||
T Consensus      1227 AGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rh 1306 (1567)
T KOG1015|consen 1227 AGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERH 1306 (1567)
T ss_pred             cCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHcccCCCCCCCChhhhhhcccCCCCCccccccccccCCCCCCCCchHHHHHHhhccCCCcccccccchhhccc
Q 001149          948 ISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQE 1027 (1138)
Q Consensus       948 ~s~~el~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~~h~sll~~ 1027 (1138)
                      |+++||.+||+|+++-. ++-                 +    ...++.+|+|++++++|..| .+.|++||||||||.+
T Consensus      1307 y~~neLteLy~fep~~d-dp~-----------------s----Er~~~~lpKdrllae~l~~~-q~~i~~y~ehdSll~~ 1363 (1567)
T KOG1015|consen 1307 YTMNELTELYTFEPDLD-DPN-----------------S----ERDTPMLPKDRLLAELLQIH-QEHIVGYHEHDSLLDH 1363 (1567)
T ss_pred             hhHhhhHHHhhcCCccC-Ccc-----------------c----ccccccCCchhHHHHHHHHH-HHHhhhhhhhhhhhcc
Confidence            99999999999997421 100                 0    01334557999999999998 7889999999999999


Q ss_pred             chhhcCCHHHHHHHHHHHHHHh------------------------------------------------hhhhcccccc
Q 001149         1028 NEEERLSKEEQDMAWEVFRKSL------------------------------------------------EWEEVQRVTV 1059 (1138)
Q Consensus      1028 ~~~~~l~~~e~~~a~~~~~~~~------------------------------------------------~~~~~~~~~~ 1059 (1138)
                      .++++||++|++.||.+|+.+.                                                +|+.++|+|.
T Consensus      1364 ~e~eelteee~k~aWaeye~Ek~~~~~r~~~pt~t~~p~~~~~q~~Q~~~~nR~~~~~~~nq~~~d~~~~e~ekv~r~~n 1443 (1567)
T KOG1015|consen 1364 KEEEELTEEERKAAWAEYEAEKKVLTMRFNIPTGTNLPPVSFNQQTQYIPFNRGALSAMSNQQLEDLINQEREKVVRATN 1443 (1567)
T ss_pred             hhHHHHHHHhhhhhhhhHHhhhccccccccCCCCCCCCccchhhhhhhhhhhhhhhhhhhHHHHHHHHhhhhhheeeccc
Confidence            9999999999999999999875                                                1444455555


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCccCccccccchhhhhhhcchhhHHHHhhcCCCCCcccccccccccccccccc
Q 001149         1060 DESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCK 1135 (1138)
Q Consensus      1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1138)
                      ...++-..|. ..-...+.+++...      .|++|+++.||...|.+|++++|-++|-.++|++|+..+.|++.-
T Consensus      1444 s~tavr~~pl-~~ll~~il~~~~~~------nr~qv~~~n~trqa~qetd~k~~~~~~~dll~~~~~~v~~v~~m~ 1512 (1567)
T KOG1015|consen 1444 SVTAVRIQPL-EDLLSAILKENMNL------NRAQVQALNLTRQASQETDVKRREAIYNDLLTKQQMLVSCVQRML 1512 (1567)
T ss_pred             Cccceeeccc-HHHHhhhccccchh------hHhhhHhhhhHHHHHHHHhhhccchhhHHHHHhhcceeeeHHHHH
Confidence            4444444444 32222333444443      899999999999999999999999999999999999999999753

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1138
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		3e-67
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		7e-45
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		2e-24
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		7e-17
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		2e-23
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		8e-16
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		3e-17
2jm1_A		141	Structures And Chemical Shift Assignments For The A		9e-05
2ld1_A		142	Structures And Chemical Shift Assignments For The A		1e-04
3ql9_A		129	Monoclinic Complex Structure Of Atrx Add Bound To H		4e-04

>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644